AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181090 MtrunA17_Chr1g0203671 98.864 792 9 0 1 792 1 792 0.0 1619
Msa0181090 MtrunA17_Chr8g0350321 65.146 789 243 13 14 790 39 807 0.0 1001
Msa0181090 MtrunA17_Chr7g0246631 65.844 729 220 9 69 790 69 775 0.0 978
Msa0181090 MtrunA17_Chr6g0472471 58.344 773 295 12 34 792 9 768 0.0 882
Msa0181090 MtrunA17_Chr2g0322731 53.678 734 301 10 60 789 67 765 0.0 740
Msa0181090 MtrunA17_Chr4g0024351 51.907 734 317 11 60 789 28 729 0.0 730
Msa0181090 MtrunA17_Chr6g0481041 46.133 724 349 15 86 789 21 723 0.0 629
Msa0181090 MtrunA17_Chr5g0410711 41.486 740 402 16 63 789 57 778 0.0 586
Msa0181090 MtrunA17_Chr2g0331581 41.954 696 350 11 99 789 143 789 0.0 564
Msa0181090 MtrunA17_Chr5g0394111 37.158 732 356 12 68 789 9 646 4.08e-155 467
Msa0181090 MtrunA17_Chr7g0224451 40.755 503 216 14 94 587 15 444 9.42e-114 352
Msa0181090 MtrunA17_Chr2g0292731 32.302 517 322 12 286 789 47 548 8.00e-87 285
Msa0181090 MtrunA17_Chr2g0292741 31.384 513 327 11 286 789 39 535 5.56e-82 272
Msa0181090 MtrunA17_Chr7g0224481 38.817 389 167 10 94 475 15 339 1.28e-77 254
Msa0181090 MtrunA17_Chr7g0224491 46.082 319 139 10 478 789 1 293 9.05e-75 245
Msa0181090 MtrunA17_Chr2g0292761 29.839 620 347 18 176 789 3 540 1.52e-70 241
Msa0181090 MtrunA17_Chr5g0419821 55.118 127 56 1 90 215 28 154 4.45e-42 151
Msa0181090 MtrunA17_Chr2g0319671 31.801 261 133 5 301 526 18 268 1.11e-35 137
Msa0181090 MtrunA17_Chr2g0319681 36.017 236 135 6 559 789 1 225 2.25e-32 125
Msa0181090 MtrunA17_Chr2g0319701 35.146 239 131 8 559 789 1 223 3.06e-30 120
Msa0181090 MtrunA17_Chr1g0205981 32.110 218 110 5 150 359 1 188 2.72e-24 101
Msa0181090 MtrunA17_Chr2g0319691 39.062 128 70 3 414 539 1 122 8.91e-23 95.5
Msa0181090 MtrunA17_Chr7g0224461 45.312 128 46 4 674 790 1 115 1.70e-21 90.5
Msa0181090 MtrunA17_Chr2g0304191 28.244 131 93 1 309 438 1 131 9.32e-16 74.7
Msa0181090 MtrunA17_Chr1g0179581 39.326 89 44 3 91 172 24 109 7.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181090 AT4G00730.1 63.108 740 239 9 51 790 94 799 0.0 917
Msa0181090 AT3G61150.1 58.313 818 272 15 1 789 26 803 0.0 905
Msa0181090 AT4G04890.2 53.117 738 318 12 54 789 24 735 0.0 770
Msa0181090 AT4G04890.1 53.117 738 318 12 54 789 24 735 0.0 770
Msa0181090 AT5G52170.3 51.905 761 276 14 40 791 1 680 0.0 748
Msa0181090 AT5G52170.1 51.905 761 276 14 40 791 1 680 0.0 748
Msa0181090 AT1G05230.8 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.4 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.9 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.10 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.7 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.11 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.2 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.6 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.5 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT1G05230.1 51.701 735 303 12 59 789 30 716 0.0 743
Msa0181090 AT5G52170.2 51.305 766 278 14 40 791 1 685 0.0 741
Msa0181090 AT1G05230.3 51.565 735 302 13 59 789 30 714 0.0 735
Msa0181090 AT4G21750.2 50.986 761 321 14 54 789 24 757 0.0 734
Msa0181090 AT4G21750.1 50.986 761 321 14 54 789 24 757 0.0 734
Msa0181090 AT4G21750.3 50.986 761 321 14 54 789 24 757 0.0 734
Msa0181090 AT4G21750.4 50.986 761 321 14 54 789 24 757 0.0 734
Msa0181090 AT1G73360.1 46.273 711 339 14 94 789 31 713 0.0 607
Msa0181090 AT1G05230.12 50.487 616 264 11 54 665 25 603 0.0 607
Msa0181090 AT4G00730.2 60.852 493 166 7 51 543 94 559 0.0 592
Msa0181090 AT1G17920.2 44.587 702 335 14 98 789 24 681 0.0 587
Msa0181090 AT1G17920.1 44.587 702 335 14 98 789 24 681 0.0 587
Msa0181090 AT2G32370.1 40.028 727 377 12 70 786 40 717 0.0 546
Msa0181090 AT1G79840.3 39.860 715 358 15 87 791 34 686 1.09e-177 526
Msa0181090 AT1G79840.6 39.860 715 358 15 87 791 34 686 1.09e-177 526
Msa0181090 AT1G79840.1 39.860 715 358 15 87 791 92 744 6.12e-177 526
Msa0181090 AT1G79840.2 39.691 713 362 14 87 791 121 773 7.66e-176 525
Msa0181090 AT5G46880.3 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0181090 AT5G46880.1 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0181090 AT5G46880.2 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0181090 AT4G25530.1 39.028 720 367 15 76 789 29 682 9.81e-165 493
Msa0181090 AT1G79840.4 40.000 585 285 13 87 661 92 620 4.02e-143 436
Msa0181090 AT3G03260.1 34.060 734 415 17 79 789 7 694 1.12e-136 421
Msa0181090 AT4G17710.1 34.907 699 368 16 95 789 88 703 2.38e-129 402
Msa0181090 AT5G17320.1 34.008 741 439 22 74 790 2 716 2.99e-122 384
Msa0181090 AT1G34650.1 32.642 723 440 16 85 789 12 705 1.79e-113 361
Msa0181090 AT3G03260.2 33.692 558 329 13 79 627 7 532 1.07e-101 325
Msa0181090 AT1G79840.5 38.013 463 223 11 87 540 92 499 6.30e-99 317
Msa0181090 AT5G07260.1 25.841 565 335 16 160 722 9 491 8.31e-49 181
Msa0181090 AT5G07260.2 26.018 565 329 16 160 722 9 486 1.24e-48 181
Msa0181090 AT1G30490.1 37.255 102 55 3 81 178 6 102 4.63e-11 67.0

Find 240 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGTCCGTTGCTTATTTC+TGG 0.113009 1_4:+69197463 Msa0181090:CDS
CCGTTGCTTATTTCTGGTTT+TGG 0.171502 1_4:+69197469 Msa0181090:CDS
GGTGCTCTTCGAACAATATT+TGG 0.196521 1_4:-69195517 None:intergenic
AGATAGTCCTGTTTGGATTA+AGG 0.217419 1_4:+69195886 Msa0181090:CDS
GAAGACTATTCACCAGAATT+TGG 0.222863 1_4:-69198537 None:intergenic
GTGCTTCATCTGCTAGAAAA+TGG 0.232062 1_4:+69197760 Msa0181090:CDS
TCAGCATTGCATTAACAAAA+TGG 0.246356 1_4:-69198660 None:intergenic
AAAATAAACAAGTCAAATTC+TGG 0.263814 1_4:+69195096 Msa0181090:CDS
CCACCACAGTTGTTGCATAT+TGG 0.272733 1_4:-69195479 None:intergenic
GATAGTCCTGTTTGGATTAA+GGG 0.278755 1_4:+69195887 Msa0181090:CDS
TTTGATCTTGAAGGAATATC+TGG 0.281916 1_4:+69194819 Msa0181090:CDS
ATGACCAACAACTTCTGTTC+TGG 0.284388 1_4:+69197732 Msa0181090:CDS
ATTTAATACTCACCTTCATT+TGG 0.297931 1_4:-69195136 None:intergenic
CAGAACAGACACATATGTTT+TGG 0.300815 1_4:-69198946 None:intergenic
GGATTAGCCAATGATGATAT+TGG 0.305207 1_4:-69195617 None:intergenic
TCCTGTTTGGATTAAGGGCT+TGG 0.312251 1_4:+69195892 Msa0181090:CDS
GACAAGTCTTGCAACCTTAC+AGG 0.315039 1_4:-69194487 None:intergenic
CACAGTCGGATTCCAAATTC+TGG 0.317732 1_4:+69198525 Msa0181090:CDS
TATGTTGCACTCTTGCCTTC+AGG 0.326578 1_4:+69198403 Msa0181090:CDS
TCAAGCTCTTGAATTTGATT+AGG 0.330233 1_4:-69194906 None:intergenic
TTGGATTTGGCGCTCATAGA+TGG 0.334166 1_4:+69197488 Msa0181090:CDS
CGGTTGATTTCTTCTTGTAT+TGG 0.335981 1_4:+69195953 Msa0181090:CDS
GCGACAAAACCAGCGGGTTT+AGG 0.336378 1_4:-69195977 None:intergenic
TCTCAATACTGACAAGAAAT+TGG 0.342826 1_4:+69193954 Msa0181090:five_prime_UTR
GTCACTGTTCTTGCTGTTGT+GGG 0.345979 1_4:+69194031 Msa0181090:five_prime_UTR
AACAGTCTTTGTCGTGAAAC+TGG 0.348067 1_4:-69197900 None:intergenic
CCAAGCCTTCACACTGCCTT+TGG 0.351820 1_4:-69197522 None:intergenic
GCTCTACCATCCTCAAATTC+TGG 0.354909 1_4:+69195644 Msa0181090:CDS
TTTAATACTCACCTTCATTT+GGG 0.357417 1_4:-69195135 None:intergenic
GTTTCCTTGCCCTTGACCTT+TGG 0.362517 1_4:-69198006 None:intergenic
GGTTATACATTTGGTTGTAT+AGG 0.370890 1_4:+69198744 Msa0181090:three_prime_UTR
TGAGAAAGGGGTTATACATT+TGG 0.376965 1_4:+69198735 Msa0181090:three_prime_UTR
ATGAATGGTTGTGCATTAGA+AGG 0.380812 1_4:-69196558 None:intergenic
ACGATACCGGGAGGCTCGCC+AGG 0.388787 1_4:-69197849 None:intergenic
TAGTTCACCAATGGGATTGA+TGG 0.393674 1_4:+69195775 Msa0181090:CDS
AATATTTGGCCAGGAATTGC+TGG 0.396823 1_4:-69195503 None:intergenic
AGCAGCATGCAGAAGGTGTA+TGG 0.397562 1_4:+69196499 Msa0181090:CDS
AAGATAAAAGTCTTGTTTGT+GGG 0.399676 1_4:+69194173 Msa0181090:five_prime_UTR
TTCAATGATTGCCCGTCAAC+TGG 0.404111 1_4:-69198352 None:intergenic
TGTTTGTTAAGGCACATATA+CGG 0.406272 1_4:-69195580 None:intergenic
GCCAAGGAACTTGTTTGTTA+AGG 0.406883 1_4:-69195591 None:intergenic
AACTGACTCCATTGTGAGCT+TGG 0.411048 1_4:-69198566 None:intergenic
GGTATCGGAAGGAACGGTTT+TGG 0.412783 1_4:+69195677 Msa0181090:CDS
TGACCAACAACTTCTGTTCT+GGG 0.413733 1_4:+69197733 Msa0181090:CDS
AGATCTTGCATTGGCTGCTA+TGG 0.415072 1_4:+69195838 Msa0181090:CDS
TGTGGTGGACCAGCAATTCC+TGG 0.416505 1_4:+69195494 Msa0181090:CDS
CTCGGCAATCCTTTGCCAAT+GGG 0.418291 1_4:+69195716 Msa0181090:CDS
CTCAGACAGATAGTCCTGTT+TGG 0.418832 1_4:+69195879 Msa0181090:CDS
AAGAAATGGTGCTATACATT+TGG 0.420804 1_4:+69196325 Msa0181090:CDS
TTTGTTGAATCAGACTCAAC+TGG 0.422317 1_4:+69195373 Msa0181090:intron
AGGATTCTCACTTGACGAAC+CGG 0.422609 1_4:-69196465 None:intergenic
CTTACCTTGGAGTAACCATT+TGG 0.423156 1_4:-69196624 None:intergenic
GTTGATGTTTCTGTTGAGAT+TGG 0.423253 1_4:+69196528 Msa0181090:CDS
AGCCTTCACACTGCCTTTGG+AGG 0.424623 1_4:-69197519 None:intergenic
CATCACTCAGAGTCCCCATT+TGG 0.425038 1_4:-69197791 None:intergenic
ATACATTTGGTTGTATAGGA+AGG 0.432041 1_4:+69198748 Msa0181090:three_prime_UTR
AATTGAAAACGCTCGTCTAA+AGG 0.433147 1_4:+69195547 Msa0181090:CDS
GCTGAAGCTACGAGAGAAAC+CGG 0.433814 1_4:+69195998 Msa0181090:CDS
TGTATAGGAAGGGTTGCTTA+AGG 0.433860 1_4:+69198759 Msa0181090:three_prime_UTR
TGCTTCATCTGCTAGAAAAT+GGG 0.434105 1_4:+69197761 Msa0181090:CDS
AAAGTGATAGTGACGATTGC+TGG 0.435596 1_4:+69194333 Msa0181090:five_prime_UTR
TCCTTCTGGCTGTATTGTGC+AGG 0.438832 1_4:+69196596 Msa0181090:CDS
TTAGCGCTGCAACATCTGTT+TGG 0.439034 1_4:+69197874 Msa0181090:CDS
TCAAATTCTGGTCTGGAACT+TGG 0.441450 1_4:+69195656 Msa0181090:CDS
AGCTTAGATACTGGTCTGCT+TGG 0.441475 1_4:+69194750 Msa0181090:CDS
AGCGATAACTTTGATCTTGA+AGG 0.443275 1_4:+69194810 Msa0181090:CDS
ATGGAGGGGCAGAGTGAGAT+TGG 0.448707 1_4:+69194714 Msa0181090:CDS
TGTCACTGTTCTTGCTGTTG+TGG 0.451766 1_4:+69194030 Msa0181090:five_prime_UTR
AAGATCAAAGTTATCGCTTC+CGG 0.452078 1_4:-69194805 None:intergenic
AGCACTTGTGGAAACTTTGA+TGG 0.452399 1_4:+69196042 Msa0181090:CDS
ACCATCCTCAAATTCTGGTC+TGG 0.453392 1_4:+69195649 Msa0181090:CDS
AAAATGGGACAGCCTCCAAA+TGG 0.457660 1_4:+69197776 Msa0181090:CDS
TCCAAGCCCTTAATCCAAAC+AGG 0.457877 1_4:-69195893 None:intergenic
GAAGCATGTGTGAACCTTGT+TGG 0.458837 1_4:+69194065 Msa0181090:five_prime_UTR
GGTGGTGCTGGCGATGGTGG+TGG 0.459096 1_4:+69198493 Msa0181090:CDS
ACATGCTTCTTCTACCAGCT+TGG 0.460496 1_4:-69197692 None:intergenic
CAAAGTTATCGCTTCCGGAC+CGG 0.465356 1_4:-69194800 None:intergenic
TGGCAAACCAATATCATCAT+TGG 0.472028 1_4:+69195610 Msa0181090:CDS
GTTTGGATTAAGGGCTTGGA+TGG 0.472664 1_4:+69195896 Msa0181090:CDS
TGTTGATTCTGCAAGAAACT+TGG 0.473065 1_4:+69198296 Msa0181090:CDS
AGGAATATCTGGTGATGATC+AGG 0.473094 1_4:+69194830 Msa0181090:CDS
AATCAACAGTTTAGCACTTG+TGG 0.473233 1_4:+69196030 Msa0181090:CDS
CCTCGGCAATCCTTTGCCAA+TGG 0.475104 1_4:+69195715 Msa0181090:CDS
GGCTTTGCAATTGTTCCTGA+TGG 0.475420 1_4:+69198424 Msa0181090:CDS
TTGCCAATGGGACTTGATCT+CGG 0.479358 1_4:+69195728 Msa0181090:CDS
GCCTTAACAAACAAGTTCCT+TGG 0.480879 1_4:+69195590 Msa0181090:CDS
TGCAGCGCTAAGCACGATAC+CGG 0.481258 1_4:-69197862 None:intergenic
AGCAAGAACAGTGACACATA+AGG 0.481995 1_4:-69194023 None:intergenic
GCCTTCACACTGCCTTTGGA+GGG 0.482232 1_4:-69197518 None:intergenic
AAGTTCCAGACCAGAATTTG+AGG 0.483874 1_4:-69195654 None:intergenic
GGTGGTGGTTCAAGCTCCCT+CGG 0.484315 1_4:+69195698 Msa0181090:CDS
GCAAGAACAGTGACACATAA+GGG 0.484327 1_4:-69194022 None:intergenic
TCTGGCTACGGCATGTCAAA+TGG 0.484409 1_4:+69198457 Msa0181090:CDS
GATGACCCTGGCGAGCCTCC+CGG 0.485077 1_4:+69197843 Msa0181090:CDS
AGGAAAATGACAAGCTAAGA+GGG 0.487415 1_4:+69195423 Msa0181090:CDS
GTGGTGTATGCACCAGTTGA+CGG 0.489013 1_4:+69198340 Msa0181090:CDS
AAATGGGACAGCCTCCAAAT+GGG 0.490793 1_4:+69197777 Msa0181090:CDS
AGGTCACTTGGATTGAGCAC+TGG 0.495140 1_4:+69197410 Msa0181090:intron
GCTTAGATACTGGTCTGCTT+GGG 0.495575 1_4:+69194751 Msa0181090:CDS
AGCTGTAGAAGACTTCCTTC+TGG 0.496424 1_4:+69196582 Msa0181090:CDS
TTGCATTGTTGTAGGTCACT+TGG 0.496497 1_4:+69197398 Msa0181090:intron
ACAGTTGATAAGAAAGAAGA+TGG 0.497161 1_4:-69194549 None:intergenic
ACTGTTGATTATTACTATCC+CGG 0.497411 1_4:-69196017 None:intergenic
CCTGGTATTAGTTCACCAAT+GGG 0.499291 1_4:+69195767 Msa0181090:CDS
CCAAAGGCAGTGTGAAGGCT+TGG 0.499979 1_4:+69197522 Msa0181090:CDS
GGATTCTCACTTGACGAACC+GGG 0.501488 1_4:-69196464 None:intergenic
TGATGTTCAGCTTGAGAGAT+CGG 0.502609 1_4:+69195808 Msa0181090:CDS
GATGAGTATGAAAGCCGGTC+CGG 0.502821 1_4:+69194786 Msa0181090:CDS
TAGGAAGGGTTGCTTAAGGA+AGG 0.502861 1_4:+69198763 Msa0181090:three_prime_UTR
CCCATTGGTGAACTAATACC+AGG 0.505164 1_4:-69195767 None:intergenic
CACTCAGAGTCCCCATTTGG+AGG 0.506413 1_4:-69197788 None:intergenic
AAAGATAAAAGTCTTGTTTG+TGG 0.507627 1_4:+69194172 Msa0181090:five_prime_UTR
ACTGGTGATAGCTTAGATAC+TGG 0.508547 1_4:+69194741 Msa0181090:CDS
TTCACACTGCCTTTGGAGGG+TGG 0.511667 1_4:-69197515 None:intergenic
CAGAGTGAGATTGGTCTCAC+TGG 0.512660 1_4:+69194723 Msa0181090:CDS
AGTCTTCTACAGCTTATGAA+TGG 0.512664 1_4:-69196573 None:intergenic
GGTAATGATCCCTCTGGCTA+CGG 0.514599 1_4:+69198445 Msa0181090:CDS
TTCGTCAAGTGAGAATCCTT+CGG 0.514988 1_4:+69196469 Msa0181090:CDS
TATGGATGAATTATTAAAGA+TGG 0.515193 1_4:+69195856 Msa0181090:CDS
TACATTTGGTTGTATAGGAA+GGG 0.515297 1_4:+69198749 Msa0181090:three_prime_UTR
TGAGAACATAATGCTTAGGC+AGG 0.515881 1_4:+69195403 Msa0181090:CDS
ATTGCTTTCACCACTAGTCC+CGG 0.516885 1_4:+69196446 Msa0181090:CDS
AGTTCACCAATGGGATTGAT+GGG 0.519574 1_4:+69195776 Msa0181090:CDS
TCTTAGCAAGAGACTTGGCT+TGG 0.520649 1_4:+69195073 Msa0181090:CDS
TAGAAGAAGCATGTTGAAGC+TGG 0.521232 1_4:+69197701 Msa0181090:CDS
TCTTCGAACAATATTTGGCC+AGG 0.521570 1_4:-69195512 None:intergenic
GGAGATGGTCGCTCAATGCC+TGG 0.523620 1_4:+69195749 Msa0181090:CDS
GCCTGGTATTAGTTCACCAA+TGG 0.525635 1_4:+69195766 Msa0181090:CDS
AAAGGTGGTGCTGGCGATGG+TGG 0.526742 1_4:+69198490 Msa0181090:CDS
GGTCACTTGGATTGAGCACT+GGG 0.528082 1_4:+69197411 Msa0181090:intron
TGCAGCTTTGATCTTCTGAA+TGG 0.531714 1_4:-69198617 None:intergenic
CTTGCAAGTTGCAACTGTAA+AGG 0.532912 1_4:-69198982 None:intergenic
GTTCACATTGCCAAAGGTCA+AGG 0.536772 1_4:+69197996 Msa0181090:CDS
GGATACATCTTGCTCGGTGG+TGG 0.536827 1_4:+69198321 Msa0181090:CDS
TTTGCAGCATTGAGCCAAGC+TGG 0.536871 1_4:+69197678 Msa0181090:intron
TGAGTACATAAGAGTCAGAA+TGG 0.536981 1_4:+69194373 Msa0181090:five_prime_UTR
GAGTGTGAACAGTTCCTGTA+AGG 0.537925 1_4:+69194473 Msa0181090:CDS
GGAATCGGTGGAACAAGAAA+TGG 0.540658 1_4:+69196311 Msa0181090:CDS
CAGGAAAATGACAAGCTAAG+AGG 0.541163 1_4:+69195422 Msa0181090:CDS
TACATAAGAGTCAGAATGGA+AGG 0.542507 1_4:+69194377 Msa0181090:five_prime_UTR
TGTATTGGTCCTAAACCCGC+TGG 0.543160 1_4:+69195968 Msa0181090:CDS
ATGAAAGGCTTAGAAGCGAG+TGG 0.543168 1_4:+69197937 Msa0181090:CDS
TTGGATCTTAGCAAGAGACT+TGG 0.543973 1_4:+69195068 Msa0181090:CDS
CCAGAGGGATCATTACCATC+AGG 0.544598 1_4:-69198439 None:intergenic
AACCCCAGAACAGAAGTTGT+TGG 0.545437 1_4:-69197736 None:intergenic
GAATCGTCGAACCCAAATGA+AGG 0.545567 1_4:+69195124 Msa0181090:CDS
GGTGGAAGTTTGCTCACAGT+CGG 0.546541 1_4:+69198511 Msa0181090:CDS
TTCTGTAAGCAGCATGCAGA+AGG 0.546904 1_4:+69196492 Msa0181090:CDS
GGCTCTAATAGATCTTGCAT+TGG 0.550601 1_4:+69195829 Msa0181090:CDS
TTTGAGGATGGTAGAGCCAT+GGG 0.555597 1_4:-69195638 None:intergenic
GTGATGATGGTCAGCGCAAG+AGG 0.555699 1_4:+69194859 Msa0181090:CDS
ATCATCATTGGCTAATCCCA+TGG 0.556384 1_4:+69195622 Msa0181090:CDS
GATCAGGATGGTGGTGATGA+TGG 0.558173 1_4:+69194846 Msa0181090:CDS
AATGTGAACCATCTCTTGCA+TGG 0.559591 1_4:-69197982 None:intergenic
TCAAATGGTACTTTACAGAA+AGG 0.561442 1_4:+69198472 Msa0181090:CDS
CCTGATGGTAATGATCCCTC+TGG 0.562249 1_4:+69198439 Msa0181090:CDS
TGGTGTATGCACCAGTTGAC+GGG 0.562286 1_4:+69198341 Msa0181090:CDS
CTACTTCCCATCAATCCCAT+TGG 0.562854 1_4:-69195782 None:intergenic
ATGGGACTTGATCTCGGAGA+TGG 0.563438 1_4:+69195734 Msa0181090:CDS
GGCATGAGAACATAATGCTT+AGG 0.566863 1_4:+69195399 Msa0181090:CDS
GTCTGGAACTTGGTATCGGA+AGG 0.567325 1_4:+69195666 Msa0181090:CDS
CAGAAAGGTGGTGCTGGCGA+TGG 0.567714 1_4:+69198487 Msa0181090:CDS
ATGTGAACCATCTCTTGCAT+GGG 0.567812 1_4:-69197981 None:intergenic
TCCATTGTGAGCTTGGCAGT+TGG 0.569368 1_4:-69198559 None:intergenic
AGATAAAAGTCTTGTTTGTG+GGG 0.569816 1_4:+69194174 Msa0181090:five_prime_UTR
ACCAGATAAAACATCAAGGT+TGG 0.570465 1_4:-69196288 None:intergenic
ATTTGAGGATGGTAGAGCCA+TGG 0.573157 1_4:-69195639 None:intergenic
ACTTTACAGAAAGGTGGTGC+TGG 0.574608 1_4:+69198481 Msa0181090:CDS
TCTGGTCTGGAACTTGGTAT+CGG 0.578760 1_4:+69195662 Msa0181090:CDS
ACCCTCCAAAGGCAGTGTGA+AGG 0.587970 1_4:+69197517 Msa0181090:CDS
TTGGATGGATACATCTTGCT+CGG 0.589147 1_4:+69198315 Msa0181090:CDS
TGGTGGACCCATGCAAGAGA+TGG 0.592249 1_4:+69197974 Msa0181090:CDS
GATTCTGCAAGAAACTTGGA+TGG 0.592935 1_4:+69198300 Msa0181090:CDS
GACCAACAACTTCTGTTCTG+GGG 0.596269 1_4:+69197734 Msa0181090:CDS
GCAGCATGCAGAAGGTGTAT+GGG 0.596526 1_4:+69196500 Msa0181090:CDS
GGAACTCGTGGCGTTGCTGA+TGG 0.596588 1_4:+69198815 Msa0181090:three_prime_UTR
TACAGTTGCAACTTGCAAGT+GGG 0.596978 1_4:+69198986 Msa0181090:three_prime_UTR
GATGGATCGCCACCCTCCAA+AGG 0.597522 1_4:+69197506 Msa0181090:CDS
GGAACAATTGCAAAGCCTGA+AGG 0.597670 1_4:-69198418 None:intergenic
TCCAGACCAGAATTTGAGGA+TGG 0.597964 1_4:-69195650 None:intergenic
GCAGCGCTAAGCACGATACC+GGG 0.598314 1_4:-69197861 None:intergenic
ACTTGACGAACCGGGACTAG+TGG 0.600610 1_4:-69196456 None:intergenic
AGATCAAGTCCCATTGGCAA+AGG 0.604435 1_4:-69195725 None:intergenic
TCTCCGAGATCAAGTCCCAT+TGG 0.604534 1_4:-69195731 None:intergenic
CCAATATGCAACAACTGTGG+TGG 0.604713 1_4:+69195479 Msa0181090:CDS
TAGCATGATGAAAGAAGCAA+TGG 0.604769 1_4:+69195451 Msa0181090:CDS
TGCAGAAGGTGTATGGGCCG+TGG 0.605614 1_4:+69196506 Msa0181090:CDS
GAATGCAAAGACTAACTCGC+AGG 0.606002 1_4:-69198911 None:intergenic
GGTGTGATCATCGTTTGAGA+TGG 0.606434 1_4:-69197563 None:intergenic
TTACAGTTGCAACTTGCAAG+TGG 0.607087 1_4:+69198985 Msa0181090:three_prime_UTR
GAACTTGGTATCGGAAGGAA+CGG 0.607404 1_4:+69195671 Msa0181090:CDS
TTGTTTGTGGGGTGTTGACA+AGG 0.608143 1_4:+69194185 Msa0181090:five_prime_UTR
TTGAATGTGGTGATGAGTGG+TGG 0.609782 1_4:+69198370 Msa0181090:CDS
ATGATGATATTGGTTTGCCA+AGG 0.610133 1_4:-69195607 None:intergenic
CATGCTGCTTACAGAACCGA+AGG 0.611995 1_4:-69196485 None:intergenic
CTGAAGCTACGAGAGAAACC+GGG 0.613811 1_4:+69195999 Msa0181090:CDS
ATCATCGTTTGAGATGGAAG+AGG 0.615317 1_4:-69197557 None:intergenic
TAAGCAACGGACGATAGAGT+TGG 0.616243 1_4:-69197456 None:intergenic
TCTTCCTTTCTGATCCAACA+AGG 0.616341 1_4:-69194079 None:intergenic
TGTGGAAACTTTGATGGATG+CGG 0.616357 1_4:+69196048 Msa0181090:CDS
TCCAACTGCCAAGCTCACAA+TGG 0.619453 1_4:+69198558 Msa0181090:CDS
TGAATCAGACTCAACTGGAA+AGG 0.621264 1_4:+69195378 Msa0181090:intron
GAGAGGATGAGTATGAAAGC+CGG 0.622277 1_4:+69194781 Msa0181090:CDS
TTCACATTGCCAAAGGTCAA+GGG 0.624942 1_4:+69197997 Msa0181090:CDS
ATGACATGAGAGTTATGACT+AGG 0.627138 1_4:+69197811 Msa0181090:CDS
TATGCCAAATGGTTACTCCA+AGG 0.627451 1_4:+69196620 Msa0181090:CDS
ATTTGACATGCCGTAGCCAG+AGG 0.627533 1_4:-69198455 None:intergenic
TTCCACCAGATAAAACATCA+AGG 0.627792 1_4:-69196292 None:intergenic
GCTTCAGCGACAAAACCAGC+GGG 0.631586 1_4:-69195983 None:intergenic
ATTGCCAAAGGTCAAGGGCA+AGG 0.631892 1_4:+69198002 Msa0181090:CDS
TGAATCAAGAAGAGTATGCA+CGG 0.632793 1_4:+69195933 Msa0181090:CDS
CAAGTTGCAACTGTAAAGGA+CGG 0.635093 1_4:-69198978 None:intergenic
GCAATTTCAGATGCATACTG+AGG 0.637345 1_4:+69196419 Msa0181090:intron
TTTGATTAGGAGTGTGTCTG+TGG 0.637619 1_4:-69194893 None:intergenic
TTTGACATGCCGTAGCCAGA+GGG 0.639169 1_4:-69198454 None:intergenic
TGAAAGGCTTAGAAGCGAGT+GGG 0.641966 1_4:+69197938 Msa0181090:CDS
ATTGTGCAGGATATGCCAAA+TGG 0.645079 1_4:+69196609 Msa0181090:CDS
AATGGGACAGCCTCCAAATG+GGG 0.646605 1_4:+69197778 Msa0181090:CDS
AATGGTACTTTACAGAAAGG+TGG 0.653820 1_4:+69198475 Msa0181090:CDS
TTGAGATGGAAGAGGACATG+AGG 0.654253 1_4:-69197549 None:intergenic
GAGATGGTTCACATTGCCAA+AGG 0.654763 1_4:+69197990 Msa0181090:CDS
TCCTGCACAATACAGCCAGA+AGG 0.655286 1_4:-69196597 None:intergenic
CGATACCGGGAGGCTCGCCA+GGG 0.655976 1_4:-69197848 None:intergenic
CTCAACAGAAACATCAACCA+CGG 0.657444 1_4:-69196523 None:intergenic
TGAACCTTGTTGGATCAGAA+AGG 0.657649 1_4:+69194075 Msa0181090:five_prime_UTR
AGCTTCAGCGACAAAACCAG+CGG 0.660319 1_4:-69195984 None:intergenic
TCATTGAATGTGGTGATGAG+TGG 0.663206 1_4:+69198367 Msa0181090:CDS
GCGCTAAGCACGATACCGGG+AGG 0.668252 1_4:-69197858 None:intergenic
CCAAAACCAGAAATAAGCAA+CGG 0.679772 1_4:-69197469 None:intergenic
GATGGATACATCTTGCTCGG+TGG 0.691053 1_4:+69198318 Msa0181090:CDS
CATTGGCAAAGGATTGCCGA+GGG 0.693173 1_4:-69195714 None:intergenic
TCTGCTTGGGAGAATGAGAG+AGG 0.693480 1_4:+69194764 Msa0181090:CDS
GGAAAATGACAAGCTAAGAG+GGG 0.705532 1_4:+69195424 Msa0181090:CDS
ATCTCAAACGATGATCACAC+CGG 0.708202 1_4:+69197565 Msa0181090:CDS
TAAAACTTACATTAGCACGA+AGG 0.708878 1_4:-69198040 None:intergenic
TGACGGGCAATCATTGAATG+TGG 0.709763 1_4:+69198357 Msa0181090:CDS
CCATTGGCAAAGGATTGCCG+AGG 0.716261 1_4:-69195715 None:intergenic
TCTGGTGATGATCAGGATGG+TGG 0.723311 1_4:+69194837 Msa0181090:CDS
ATATCTGGTGATGATCAGGA+TGG 0.775557 1_4:+69194834 Msa0181090:CDS
AATCCAATATGCAACAACTG+TGG 0.796420 1_4:+69195476 Msa0181090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATCTTATTTTTCTTA+TGG + chr1_4:69194443-69194462 Msa0181090:exon 10.0%
!!! AAAAATCTTATTTTTCTTAT+GGG + chr1_4:69194444-69194463 Msa0181090:exon 10.0%
!!! TTATTAATCTTTATTGTTTT+TGG + chr1_4:69194601-69194620 Msa0181090:intron 10.0%
!!! AAACAAATATTTTATACTAA+AGG - chr1_4:69197021-69197040 None:intergenic 10.0%
!! TAATGCTATATAAAATATAA+TGG + chr1_4:69197088-69197107 Msa0181090:intron 10.0%
!!! AAAATCTTATTTTTCTTATG+GGG + chr1_4:69194445-69194464 Msa0181090:exon 15.0%
!!! TAATCTTATATCTTGTTTTA+TGG + chr1_4:69194577-69194596 Msa0181090:intron 15.0%
!! AAAAAACAATAAGAGAAAAA+TGG - chr1_4:69194999-69195018 None:intergenic 15.0%
!!! TTTTTTTTTTAGTTTCTTCA+AGG + chr1_4:69195016-69195035 Msa0181090:intron 15.0%
!! TATTAATACAAATGCAATAA+CGG - chr1_4:69195320-69195339 None:intergenic 15.0%
!! ATCTGTCTAATTATATTAAA+AGG - chr1_4:69197138-69197157 None:intergenic 15.0%
!!! TTATAATTTATAATTAGCCT+AGG + chr1_4:69197295-69197314 Msa0181090:intron 15.0%
!!! TATAATTTATAATTAGCCTA+GGG + chr1_4:69197296-69197315 Msa0181090:intron 15.0%
!!! TAGTTAATATTTCTGTATAA+TGG + chr1_4:69197342-69197361 Msa0181090:intron 15.0%
!!! GTTTTATTAATTTTTTGAAC+TGG + chr1_4:69198712-69198731 Msa0181090:three_prime_UTR 15.0%
!! TAGTTAAGAACTAAAAACAA+TGG - chr1_4:69194957-69194976 None:intergenic 20.0%
!!! TTTTTAGTTCTTAACTAATG+TGG + chr1_4:69194960-69194979 Msa0181090:intron 20.0%
!! AAAATAAACAAGTCAAATTC+TGG + chr1_4:69195096-69195115 Msa0181090:CDS 20.0%
!!! TGCAGATTTTTAAAAGAAAA+TGG - chr1_4:69195169-69195188 None:intergenic 20.0%
!! GTTTGTAATCTTTGATATTA+TGG - chr1_4:69195271-69195290 None:intergenic 20.0%
!! TATGGATGAATTATTAAAGA+TGG + chr1_4:69195856-69195875 Msa0181090:CDS 20.0%
!! ACAAAATTTCCTATCAAAAT+CGG - chr1_4:69196119-69196138 None:intergenic 20.0%
!! TGCTATATCTAAATAGAATA+AGG + chr1_4:69196727-69196746 Msa0181090:intron 20.0%
!! AATAGAATAAGGTTGAAATA+AGG + chr1_4:69196738-69196757 Msa0181090:intron 20.0%
!!! AGTTTTTTTACTTGTTTACT+TGG + chr1_4:69196793-69196812 Msa0181090:intron 20.0%
!!! GTTTTTTTACTTGTTTACTT+GGG + chr1_4:69196794-69196813 Msa0181090:intron 20.0%
!!! TGCATGAAAATTTTAAATCT+TGG + chr1_4:69196942-69196961 Msa0181090:intron 20.0%
!! CTTGTTAACTACTAATTAAA+TGG + chr1_4:69197635-69197654 Msa0181090:intron 20.0%
!! CTAATTAAATGGTGTAAATT+TGG + chr1_4:69197646-69197665 Msa0181090:intron 20.0%
!! TTTTTGGATTTTCTCTTTCA+GGG + chr1_4:69193918-69193937 Msa0181090:five_prime_UTR 25.0%
!!! AAAGATAAAAGTCTTGTTTG+TGG + chr1_4:69194172-69194191 Msa0181090:five_prime_UTR 25.0%
!!! AAGATAAAAGTCTTGTTTGT+GGG + chr1_4:69194173-69194192 Msa0181090:five_prime_UTR 25.0%
!! ATTCAATCTTTGTCAGTTTT+TGG + chr1_4:69194248-69194267 Msa0181090:five_prime_UTR 25.0%
! TCAAAAACTGAAAAGTTCAT+TGG + chr1_4:69194308-69194327 Msa0181090:five_prime_UTR 25.0%
!! TTTTGCATTGAACTAGAAAA+GGG - chr1_4:69194528-69194547 None:intergenic 25.0%
!! ATTTTGCATTGAACTAGAAA+AGG - chr1_4:69194529-69194548 None:intergenic 25.0%
!! TTTTCTACAGCAAAGAAAAA+TGG + chr1_4:69194695-69194714 Msa0181090:intron 25.0%
! TTTAATACTCACCTTCATTT+GGG - chr1_4:69195138-69195157 None:intergenic 25.0%
! ATTTAATACTCACCTTCATT+TGG - chr1_4:69195139-69195158 None:intergenic 25.0%
! AAATTACAAAGAAGACTAAG+AGG - chr1_4:69196094-69196113 None:intergenic 25.0%
!!! GTAATTTAACCGATTTTGAT+AGG + chr1_4:69196107-69196126 Msa0181090:intron 25.0%
!!! TACCAAAAAACTGATTTTTC+AGG - chr1_4:69196774-69196793 None:intergenic 25.0%
! TGAAACTTCATATATCTGTT+TGG + chr1_4:69196899-69196918 Msa0181090:intron 25.0%
! CGTATGTAAGATGTTTATAT+AGG - chr1_4:69197267-69197286 None:intergenic 25.0%
! AAAATAAGTTGCATTGTTGT+AGG + chr1_4:69197390-69197409 Msa0181090:intron 25.0%
!! ACGTATGATTTGGATTTAAA+CGG - chr1_4:69198071-69198090 None:intergenic 25.0%
! GCTATAGAGAAATCATAAAT+AGG + chr1_4:69198093-69198112 Msa0181090:intron 25.0%
! AAAAACAAGTTCACAAAACA+AGG - chr1_4:69198690-69198709 None:intergenic 25.0%
!!! TGTTTTGTGAACTTGTTTTT+TGG + chr1_4:69198690-69198709 Msa0181090:three_prime_UTR 25.0%
GAAAATCCAAAAACATTGCA+TGG - chr1_4:69193911-69193930 None:intergenic 30.0%
!! GTTTTTGGATTTTCTCTTTC+AGG + chr1_4:69193917-69193936 Msa0181090:five_prime_UTR 30.0%
TCTCAATACTGACAAGAAAT+TGG + chr1_4:69193954-69193973 Msa0181090:five_prime_UTR 30.0%
CCAGAAAAAACAGATGAAAA+AGG - chr1_4:69194129-69194148 None:intergenic 30.0%
!!! CCTTTTTCATCTGTTTTTTC+TGG + chr1_4:69194126-69194145 Msa0181090:five_prime_UTR 30.0%
!!! TCATCTGTTTTTTCTGGATT+AGG + chr1_4:69194132-69194151 Msa0181090:five_prime_UTR 30.0%
!! AGATAAAAGTCTTGTTTGTG+GGG + chr1_4:69194174-69194193 Msa0181090:five_prime_UTR 30.0%
AATCTGAGTCAAAAAGTCAA+AGG + chr1_4:69194274-69194293 Msa0181090:five_prime_UTR 30.0%
ATCTGAGTCAAAAAGTCAAA+GGG + chr1_4:69194275-69194294 Msa0181090:five_prime_UTR 30.0%
! ATTCTTCTCAGACAAGTTTT+AGG + chr1_4:69194413-69194432 Msa0181090:five_prime_UTR 30.0%
!! ACAGTTGATAAGAAAGAAGA+TGG - chr1_4:69194552-69194571 None:intergenic 30.0%
!! TTGGATTTGATTTTGCATGT+TGG + chr1_4:69194620-69194639 Msa0181090:intron 30.0%
TTTGATCTTGAAGGAATATC+TGG + chr1_4:69194819-69194838 Msa0181090:CDS 30.0%
TCAAGCTCTTGAATTTGATT+AGG - chr1_4:69194909-69194928 None:intergenic 30.0%
! TTTTTAATGTCTCCACAACA+AGG + chr1_4:69195216-69195235 Msa0181090:intron 30.0%
! TGTTTGTTAAGGCACATATA+CGG - chr1_4:69195583-69195602 None:intergenic 30.0%
! ACTGTTGATTATTACTATCC+CGG - chr1_4:69196020-69196039 None:intergenic 30.0%
CTATATCACTCACAAAATGT+TGG - chr1_4:69196144-69196163 None:intergenic 30.0%
!! AAGAAATGGTGCTATACATT+TGG + chr1_4:69196325-69196344 Msa0181090:CDS 30.0%
!!! TGCCTGAAAAATCAGTTTTT+TGG + chr1_4:69196769-69196788 Msa0181090:intron 30.0%
AAATTGATACAGATGTCAGA+AGG - chr1_4:69197228-69197247 None:intergenic 30.0%
!!! CTTATTTCTGGTTTTGGATT+TGG + chr1_4:69197475-69197494 Msa0181090:CDS 30.0%
!!! ATGCATGTGATTTGTTTTAC+CGG - chr1_4:69197587-69197606 None:intergenic 30.0%
TAAAACTTACATTAGCACGA+AGG - chr1_4:69198043-69198062 None:intergenic 30.0%
TCTATAGCTAACGTATGATT+TGG - chr1_4:69198081-69198100 None:intergenic 30.0%
TCTCATAAAACCAACTTACA+AGG - chr1_4:69198142-69198161 None:intergenic 30.0%
!!! TGGTTTTATGAGATTGAGTT+AGG + chr1_4:69198149-69198168 Msa0181090:intron 30.0%
TTATGAGATTGAGTTAGGAT+CGG + chr1_4:69198154-69198173 Msa0181090:intron 30.0%
TCAAATGGTACTTTACAGAA+AGG + chr1_4:69198472-69198491 Msa0181090:CDS 30.0%
TCAGCATTGCATTAACAAAA+TGG - chr1_4:69198663-69198682 None:intergenic 30.0%
!!! ATTTTTTGAACTGGTGAGAA+AGG + chr1_4:69198721-69198740 Msa0181090:three_prime_UTR 30.0%
!!! TTTTTTGAACTGGTGAGAAA+GGG + chr1_4:69198722-69198741 Msa0181090:three_prime_UTR 30.0%
GGTTATACATTTGGTTGTAT+AGG + chr1_4:69198744-69198763 Msa0181090:three_prime_UTR 30.0%
ATACATTTGGTTGTATAGGA+AGG + chr1_4:69198748-69198767 Msa0181090:three_prime_UTR 30.0%
TACATTTGGTTGTATAGGAA+GGG + chr1_4:69198749-69198768 Msa0181090:three_prime_UTR 30.0%
!! GCAAACAAGTTTTCTAGTAA+TGG + chr1_4:69198865-69198884 Msa0181090:three_prime_UTR 30.0%
!! AACAAGTTTTCTAGTAATGG+TGG + chr1_4:69198868-69198887 Msa0181090:three_prime_UTR 30.0%
! TCTCTTCCATGCAATGTTTT+TGG + chr1_4:69193902-69193921 Msa0181090:five_prime_UTR 35.0%
CAGATGAAAAAGGTTACAAC+AGG - chr1_4:69194119-69194138 None:intergenic 35.0%
TGAGTACATAAGAGTCAGAA+TGG + chr1_4:69194373-69194392 Msa0181090:five_prime_UTR 35.0%
TACATAAGAGTCAGAATGGA+AGG + chr1_4:69194377-69194396 Msa0181090:five_prime_UTR 35.0%
TCTACAGCAAAGAAAAATGG+AGG + chr1_4:69194698-69194717 Msa0181090:intron 35.0%
CTACAGCAAAGAAAAATGGA+GGG + chr1_4:69194699-69194718 Msa0181090:intron 35.0%
TACAGCAAAGAAAAATGGAG+GGG + chr1_4:69194700-69194719 Msa0181090:intron 35.0%
AAGATCAAAGTTATCGCTTC+CGG - chr1_4:69194808-69194827 None:intergenic 35.0%
AGCGATAACTTTGATCTTGA+AGG + chr1_4:69194810-69194829 Msa0181090:CDS 35.0%
!!! CTTTGTTTTTCATCAGGATG+AGG - chr1_4:69195047-69195066 None:intergenic 35.0%
CTCATCCTGATGAAAAACAA+AGG + chr1_4:69195045-69195064 Msa0181090:CDS 35.0%
TCCTGATGAAAAACAAAGGT+TGG + chr1_4:69195049-69195068 Msa0181090:CDS 35.0%
!!! TCCAACCTTTGTTTTTCATC+AGG - chr1_4:69195053-69195072 None:intergenic 35.0%
TGGAGAATCACATACAAAAG+CGG - chr1_4:69195251-69195270 None:intergenic 35.0%
TTTGTTGAATCAGACTCAAC+TGG + chr1_4:69195373-69195392 Msa0181090:intron 35.0%
AGGAAAATGACAAGCTAAGA+GGG + chr1_4:69195423-69195442 Msa0181090:CDS 35.0%
TAGCATGATGAAAGAAGCAA+TGG + chr1_4:69195451-69195470 Msa0181090:CDS 35.0%
AATCCAATATGCAACAACTG+TGG + chr1_4:69195476-69195495 Msa0181090:CDS 35.0%
! GAGCGTTTTCAATTCTAATC+TGG - chr1_4:69195541-69195560 None:intergenic 35.0%
AATTGAAAACGCTCGTCTAA+AGG + chr1_4:69195547-69195566 Msa0181090:CDS 35.0%
!! ATGATGATATTGGTTTGCCA+AGG - chr1_4:69195610-69195629 None:intergenic 35.0%
TGGCAAACCAATATCATCAT+TGG + chr1_4:69195610-69195629 Msa0181090:CDS 35.0%
!! GGATTAGCCAATGATGATAT+TGG - chr1_4:69195620-69195639 None:intergenic 35.0%
AGATAGTCCTGTTTGGATTA+AGG + chr1_4:69195886-69195905 Msa0181090:CDS 35.0%
GATAGTCCTGTTTGGATTAA+GGG + chr1_4:69195887-69195906 Msa0181090:CDS 35.0%
! TGAATCAAGAAGAGTATGCA+CGG + chr1_4:69195933-69195952 Msa0181090:CDS 35.0%
! CGGTTGATTTCTTCTTGTAT+TGG + chr1_4:69195953-69195972 Msa0181090:CDS 35.0%
AATCAACAGTTTAGCACTTG+TGG + chr1_4:69196030-69196049 Msa0181090:CDS 35.0%
ATTACCATCAAAGTTTCTGC+AGG + chr1_4:69196177-69196196 Msa0181090:intron 35.0%
ACCAGATAAAACATCAAGGT+TGG - chr1_4:69196291-69196310 None:intergenic 35.0%
! AACCTTGATGTTTTATCTGG+TGG + chr1_4:69196290-69196309 Msa0181090:CDS 35.0%
TTCCACCAGATAAAACATCA+AGG - chr1_4:69196295-69196314 None:intergenic 35.0%
! GATGTTTTATCTGGTGGAAT+CGG + chr1_4:69196296-69196315 Msa0181090:CDS 35.0%
TAGTAAGATCTTGCAAACCA+AGG - chr1_4:69196392-69196411 None:intergenic 35.0%
!! TTGGTTTGCAAGATCTTACT+AGG + chr1_4:69196391-69196410 Msa0181090:intron 35.0%
! GTTGATGTTTCTGTTGAGAT+TGG + chr1_4:69196528-69196547 Msa0181090:CDS 35.0%
ATGAATGGTTGTGCATTAGA+AGG - chr1_4:69196561-69196580 None:intergenic 35.0%
AGTCTTCTACAGCTTATGAA+TGG - chr1_4:69196576-69196595 None:intergenic 35.0%
ACTTGTATTAGCACTTACCT+TGG - chr1_4:69196640-69196659 None:intergenic 35.0%
TCCTAGAGATTAGTGAATCA+AGG + chr1_4:69196859-69196878 Msa0181090:intron 35.0%
AAATGTTGACATAATGCCCT+AGG - chr1_4:69197315-69197334 None:intergenic 35.0%
TATAATGGCAACGAGTATGT+TGG + chr1_4:69197357-69197376 Msa0181090:intron 35.0%
CCAAAACCAGAAATAAGCAA+CGG - chr1_4:69197472-69197491 None:intergenic 35.0%
TGCTTCATCTGCTAGAAAAT+GGG + chr1_4:69197761-69197780 Msa0181090:CDS 35.0%
ATGACATGAGAGTTATGACT+AGG + chr1_4:69197811-69197830 Msa0181090:CDS 35.0%
! TTGATTTTCTGCGTGATGAA+AGG + chr1_4:69197922-69197941 Msa0181090:CDS 35.0%
AAACAATCCTCCTTGTAAGT+TGG + chr1_4:69198129-69198148 Msa0181090:intron 35.0%
CATAAAACCAACTTACAAGG+AGG - chr1_4:69198139-69198158 None:intergenic 35.0%
!! ATTGAGTTAGGATCGGTTTT+GGG + chr1_4:69198161-69198180 Msa0181090:intron 35.0%
CCTGCAAAAACAAAGATTCT+TGG - chr1_4:69198252-69198271 None:intergenic 35.0%
!!! CCAAGAATCTTTGTTTTTGC+AGG + chr1_4:69198249-69198268 Msa0181090:intron 35.0%
!! TGTTGATTCTGCAAGAAACT+TGG + chr1_4:69198296-69198315 Msa0181090:CDS 35.0%
AATGGTACTTTACAGAAAGG+TGG + chr1_4:69198475-69198494 Msa0181090:CDS 35.0%
GAAGACTATTCACCAGAATT+TGG - chr1_4:69198540-69198559 None:intergenic 35.0%
! TTTTTGAACTGGTGAGAAAG+GGG + chr1_4:69198723-69198742 Msa0181090:three_prime_UTR 35.0%
TGAGAAAGGGGTTATACATT+TGG + chr1_4:69198735-69198754 Msa0181090:three_prime_UTR 35.0%
!! GTTTTCTAGTAATGGTGGTT+CGG + chr1_4:69198873-69198892 Msa0181090:three_prime_UTR 35.0%
!! TTTTCTAGTAATGGTGGTTC+GGG + chr1_4:69198874-69198893 Msa0181090:three_prime_UTR 35.0%
! CAGAACAGACACATATGTTT+TGG - chr1_4:69198949-69198968 None:intergenic 35.0%
GCAAGAACAGTGACACATAA+GGG - chr1_4:69194025-69194044 None:intergenic 40.0%
AGCAAGAACAGTGACACATA+AGG - chr1_4:69194026-69194045 None:intergenic 40.0%
TGAACCTTGTTGGATCAGAA+AGG + chr1_4:69194075-69194094 Msa0181090:five_prime_UTR 40.0%
TCTTCCTTTCTGATCCAACA+AGG - chr1_4:69194082-69194101 None:intergenic 40.0%
CAAAAAGTCAAAGGGTTGTG+TGG + chr1_4:69194283-69194302 Msa0181090:five_prime_UTR 40.0%
! AAAGTGATAGTGACGATTGC+TGG + chr1_4:69194333-69194352 Msa0181090:five_prime_UTR 40.0%
ACTGGTGATAGCTTAGATAC+TGG + chr1_4:69194741-69194760 Msa0181090:CDS 40.0%
! AGGAATATCTGGTGATGATC+AGG + chr1_4:69194830-69194849 Msa0181090:CDS 40.0%
! ATATCTGGTGATGATCAGGA+TGG + chr1_4:69194834-69194853 Msa0181090:CDS 40.0%
! TTTGATTAGGAGTGTGTCTG+TGG - chr1_4:69194896-69194915 None:intergenic 40.0%
TTGGATCTTAGCAAGAGACT+TGG + chr1_4:69195068-69195087 Msa0181090:CDS 40.0%
ATCACATACAAAAGCGGCTT+AGG - chr1_4:69195245-69195264 None:intergenic 40.0%
TGAATCAGACTCAACTGGAA+AGG + chr1_4:69195378-69195397 Msa0181090:intron 40.0%
GGCATGAGAACATAATGCTT+AGG + chr1_4:69195399-69195418 Msa0181090:CDS 40.0%
TGAGAACATAATGCTTAGGC+AGG + chr1_4:69195403-69195422 Msa0181090:CDS 40.0%
CAGGAAAATGACAAGCTAAG+AGG + chr1_4:69195422-69195441 Msa0181090:CDS 40.0%
GGAAAATGACAAGCTAAGAG+GGG + chr1_4:69195424-69195443 Msa0181090:CDS 40.0%
AATATTTGGCCAGGAATTGC+TGG - chr1_4:69195506-69195525 None:intergenic 40.0%
TCTTCGAACAATATTTGGCC+AGG - chr1_4:69195515-69195534 None:intergenic 40.0%
GGTGCTCTTCGAACAATATT+TGG - chr1_4:69195520-69195539 None:intergenic 40.0%
GCCTTAACAAACAAGTTCCT+TGG + chr1_4:69195590-69195609 Msa0181090:CDS 40.0%
! GCCAAGGAACTTGTTTGTTA+AGG - chr1_4:69195594-69195613 None:intergenic 40.0%
! ATCATCATTGGCTAATCCCA+TGG + chr1_4:69195622-69195641 Msa0181090:CDS 40.0%
AAGTTCCAGACCAGAATTTG+AGG - chr1_4:69195657-69195676 None:intergenic 40.0%
! TCAAATTCTGGTCTGGAACT+TGG + chr1_4:69195656-69195675 Msa0181090:CDS 40.0%
CCTGGTATTAGTTCACCAAT+GGG + chr1_4:69195767-69195786 Msa0181090:CDS 40.0%
TAGTTCACCAATGGGATTGA+TGG + chr1_4:69195775-69195794 Msa0181090:CDS 40.0%
AGTTCACCAATGGGATTGAT+GGG + chr1_4:69195776-69195795 Msa0181090:CDS 40.0%
TGATGTTCAGCTTGAGAGAT+CGG + chr1_4:69195808-69195827 Msa0181090:CDS 40.0%
! GGCTCTAATAGATCTTGCAT+TGG + chr1_4:69195829-69195848 Msa0181090:CDS 40.0%
AGCACTTGTGGAAACTTTGA+TGG + chr1_4:69196042-69196061 Msa0181090:CDS 40.0%
! TGTGGAAACTTTGATGGATG+CGG + chr1_4:69196048-69196067 Msa0181090:CDS 40.0%
CAAACCTGCAGAAACTTTGA+TGG - chr1_4:69196184-69196203 None:intergenic 40.0%
! GCCAACCTTGATGTTTTATC+TGG + chr1_4:69196287-69196306 Msa0181090:CDS 40.0%
! AAGTTTGCTTCAATGTGCCT+TGG + chr1_4:69196372-69196391 Msa0181090:intron 40.0%
GCAATTTCAGATGCATACTG+AGG + chr1_4:69196419-69196438 Msa0181090:intron 40.0%
TTCGTCAAGTGAGAATCCTT+CGG + chr1_4:69196469-69196488 Msa0181090:CDS 40.0%
CTCAACAGAAACATCAACCA+CGG - chr1_4:69196526-69196545 None:intergenic 40.0%
ATTGTGCAGGATATGCCAAA+TGG + chr1_4:69196609-69196628 Msa0181090:CDS 40.0%
TATGCCAAATGGTTACTCCA+AGG + chr1_4:69196620-69196639 Msa0181090:CDS 40.0%
CTTACCTTGGAGTAACCATT+TGG - chr1_4:69196627-69196646 None:intergenic 40.0%
!! ATCTCTAGGAGTACTAGAAG+TGG - chr1_4:69196849-69196868 None:intergenic 40.0%
GCCTTGATTCACTAATCTCT+AGG - chr1_4:69196863-69196882 None:intergenic 40.0%
CTATAATCTGCCAAGTGTGT+CGG + chr1_4:69197189-69197208 Msa0181090:intron 40.0%
TATAATCTGCCAAGTGTGTC+GGG + chr1_4:69197190-69197209 Msa0181090:intron 40.0%
TACAGATGTCAGAAGGATAG+AGG - chr1_4:69197221-69197240 None:intergenic 40.0%
TTGCATTGTTGTAGGTCACT+TGG + chr1_4:69197398-69197417 Msa0181090:intron 40.0%
TATCGTCCGTTGCTTATTTC+TGG + chr1_4:69197463-69197482 Msa0181090:CDS 40.0%
!!! CCGTTGCTTATTTCTGGTTT+TGG + chr1_4:69197469-69197488 Msa0181090:CDS 40.0%
! ATCATCGTTTGAGATGGAAG+AGG - chr1_4:69197560-69197579 None:intergenic 40.0%
ATCTCAAACGATGATCACAC+CGG + chr1_4:69197565-69197584 Msa0181090:CDS 40.0%
! TAGAAGAAGCATGTTGAAGC+TGG + chr1_4:69197701-69197720 Msa0181090:CDS 40.0%
ATGACCAACAACTTCTGTTC+TGG + chr1_4:69197732-69197751 Msa0181090:CDS 40.0%
TGACCAACAACTTCTGTTCT+GGG + chr1_4:69197733-69197752 Msa0181090:CDS 40.0%
GTGCTTCATCTGCTAGAAAA+TGG + chr1_4:69197760-69197779 Msa0181090:CDS 40.0%
!! AGGAAAAATGTTGATGACCC+TGG + chr1_4:69197831-69197850 Msa0181090:CDS 40.0%
AACAGTCTTTGTCGTGAAAC+TGG - chr1_4:69197903-69197922 None:intergenic 40.0%
! GAGTGGGACATTTTGTCTAA+TGG + chr1_4:69197954-69197973 Msa0181090:CDS 40.0%
! TGGGACATTTTGTCTAATGG+TGG + chr1_4:69197957-69197976 Msa0181090:CDS 40.0%
ATGTGAACCATCTCTTGCAT+GGG - chr1_4:69197984-69198003 None:intergenic 40.0%
AATGTGAACCATCTCTTGCA+TGG - chr1_4:69197985-69198004 None:intergenic 40.0%
TTCACATTGCCAAAGGTCAA+GGG + chr1_4:69197997-69198016 Msa0181090:CDS 40.0%
!! GATTGAGTTAGGATCGGTTT+TGG + chr1_4:69198160-69198179 Msa0181090:intron 40.0%
GATTCTGCAAGAAACTTGGA+TGG + chr1_4:69198300-69198319 Msa0181090:CDS 40.0%
TTGGATGGATACATCTTGCT+CGG + chr1_4:69198315-69198334 Msa0181090:CDS 40.0%
! TCATTGAATGTGGTGATGAG+TGG + chr1_4:69198367-69198386 Msa0181090:CDS 40.0%
! TGCAGCTTTGATCTTCTGAA+TGG - chr1_4:69198620-69198639 None:intergenic 40.0%
TGTATAGGAAGGGTTGCTTA+AGG + chr1_4:69198759-69198778 Msa0181090:three_prime_UTR 40.0%
CAAGTTGCAACTGTAAAGGA+CGG - chr1_4:69198981-69199000 None:intergenic 40.0%
CTTGCAAGTTGCAACTGTAA+AGG - chr1_4:69198985-69199004 None:intergenic 40.0%
TTACAGTTGCAACTTGCAAG+TGG + chr1_4:69198985-69199004 Msa0181090:three_prime_UTR 40.0%
TACAGTTGCAACTTGCAAGT+GGG + chr1_4:69198986-69199005 Msa0181090:three_prime_UTR 40.0%
!! TGTCACTGTTCTTGCTGTTG+TGG + chr1_4:69194030-69194049 Msa0181090:five_prime_UTR 45.0%
!! GTCACTGTTCTTGCTGTTGT+GGG + chr1_4:69194031-69194050 Msa0181090:five_prime_UTR 45.0%
GAAGCATGTGTGAACCTTGT+TGG + chr1_4:69194065-69194084 Msa0181090:five_prime_UTR 45.0%
!! TTGTTTGTGGGGTGTTGACA+AGG + chr1_4:69194185-69194204 Msa0181090:five_prime_UTR 45.0%
GAGTGTGAACAGTTCCTGTA+AGG + chr1_4:69194473-69194492 Msa0181090:CDS 45.0%
GACAAGTCTTGCAACCTTAC+AGG - chr1_4:69194490-69194509 None:intergenic 45.0%
! AGCTTAGATACTGGTCTGCT+TGG + chr1_4:69194750-69194769 Msa0181090:CDS 45.0%
! GCTTAGATACTGGTCTGCTT+GGG + chr1_4:69194751-69194770 Msa0181090:CDS 45.0%
GAGAGGATGAGTATGAAAGC+CGG + chr1_4:69194781-69194800 Msa0181090:CDS 45.0%
TCTTAGCAAGAGACTTGGCT+TGG + chr1_4:69195073-69195092 Msa0181090:CDS 45.0%
GAATCGTCGAACCCAAATGA+AGG + chr1_4:69195124-69195143 Msa0181090:CDS 45.0%
CCACCACAGTTGTTGCATAT+TGG - chr1_4:69195482-69195501 None:intergenic 45.0%
CCAATATGCAACAACTGTGG+TGG + chr1_4:69195479-69195498 Msa0181090:CDS 45.0%
TTTGAGGATGGTAGAGCCAT+GGG - chr1_4:69195641-69195660 None:intergenic 45.0%
ATTTGAGGATGGTAGAGCCA+TGG - chr1_4:69195642-69195661 None:intergenic 45.0%
GCTCTACCATCCTCAAATTC+TGG + chr1_4:69195644-69195663 Msa0181090:CDS 45.0%
ACCATCCTCAAATTCTGGTC+TGG + chr1_4:69195649-69195668 Msa0181090:CDS 45.0%
TCCAGACCAGAATTTGAGGA+TGG - chr1_4:69195653-69195672 None:intergenic 45.0%
! TCTGGTCTGGAACTTGGTAT+CGG + chr1_4:69195662-69195681 Msa0181090:CDS 45.0%
! GAACTTGGTATCGGAAGGAA+CGG + chr1_4:69195671-69195690 Msa0181090:CDS 45.0%
AGATCAAGTCCCATTGGCAA+AGG - chr1_4:69195728-69195747 None:intergenic 45.0%
TTGCCAATGGGACTTGATCT+CGG + chr1_4:69195728-69195747 Msa0181090:CDS 45.0%
GCCTGGTATTAGTTCACCAA+TGG + chr1_4:69195766-69195785 Msa0181090:CDS 45.0%
CCCATTGGTGAACTAATACC+AGG - chr1_4:69195770-69195789 None:intergenic 45.0%
CTACTTCCCATCAATCCCAT+TGG - chr1_4:69195785-69195804 None:intergenic 45.0%
!! AGATCTTGCATTGGCTGCTA+TGG + chr1_4:69195838-69195857 Msa0181090:CDS 45.0%
CTCAGACAGATAGTCCTGTT+TGG + chr1_4:69195879-69195898 Msa0181090:CDS 45.0%
TCCTGTTTGGATTAAGGGCT+TGG + chr1_4:69195892-69195911 Msa0181090:CDS 45.0%
TCCAAGCCCTTAATCCAAAC+AGG - chr1_4:69195896-69195915 None:intergenic 45.0%
GTTTGGATTAAGGGCTTGGA+TGG + chr1_4:69195896-69195915 Msa0181090:CDS 45.0%
! GTTTTATCTGGTGGAATCGG+TGG + chr1_4:69196299-69196318 Msa0181090:CDS 45.0%
GGAATCGGTGGAACAAGAAA+TGG + chr1_4:69196311-69196330 Msa0181090:CDS 45.0%
ATTGCTTTCACCACTAGTCC+CGG + chr1_4:69196446-69196465 Msa0181090:CDS 45.0%
AGGATTCTCACTTGACGAAC+CGG - chr1_4:69196468-69196487 None:intergenic 45.0%
TTCTGTAAGCAGCATGCAGA+AGG + chr1_4:69196492-69196511 Msa0181090:CDS 45.0%
AGCTGTAGAAGACTTCCTTC+TGG + chr1_4:69196582-69196601 Msa0181090:CDS 45.0%
TGTACGAGACCAATATGACC+TGG + chr1_4:69197048-69197067 Msa0181090:intron 45.0%
GAACTGGATCCAGGTCATAT+TGG - chr1_4:69197060-69197079 None:intergenic 45.0%
TAGCATTAGCAGCAGAGAAC+TGG - chr1_4:69197076-69197095 None:intergenic 45.0%
TAAGCAACGGACGATAGAGT+TGG - chr1_4:69197459-69197478 None:intergenic 45.0%
TTGGATTTGGCGCTCATAGA+TGG + chr1_4:69197488-69197507 Msa0181090:CDS 45.0%
TTGAGATGGAAGAGGACATG+AGG - chr1_4:69197552-69197571 None:intergenic 45.0%
GGTGTGATCATCGTTTGAGA+TGG - chr1_4:69197566-69197585 None:intergenic 45.0%
ACATGCTTCTTCTACCAGCT+TGG - chr1_4:69197695-69197714 None:intergenic 45.0%
GACCAACAACTTCTGTTCTG+GGG + chr1_4:69197734-69197753 Msa0181090:CDS 45.0%
AACCCCAGAACAGAAGTTGT+TGG - chr1_4:69197739-69197758 None:intergenic 45.0%
AAAATGGGACAGCCTCCAAA+TGG + chr1_4:69197776-69197795 Msa0181090:CDS 45.0%
AAATGGGACAGCCTCCAAAT+GGG + chr1_4:69197777-69197796 Msa0181090:CDS 45.0%
TTAGCGCTGCAACATCTGTT+TGG + chr1_4:69197874-69197893 Msa0181090:CDS 45.0%
ATGAAAGGCTTAGAAGCGAG+TGG + chr1_4:69197937-69197956 Msa0181090:CDS 45.0%
TGAAAGGCTTAGAAGCGAGT+GGG + chr1_4:69197938-69197957 Msa0181090:CDS 45.0%
GAGATGGTTCACATTGCCAA+AGG + chr1_4:69197990-69198009 Msa0181090:CDS 45.0%
GTTCACATTGCCAAAGGTCA+AGG + chr1_4:69197996-69198015 Msa0181090:CDS 45.0%
TTCAATGATTGCCCGTCAAC+TGG - chr1_4:69198355-69198374 None:intergenic 45.0%
! TGACGGGCAATCATTGAATG+TGG + chr1_4:69198357-69198376 Msa0181090:CDS 45.0%
TATGTTGCACTCTTGCCTTC+AGG + chr1_4:69198403-69198422 Msa0181090:CDS 45.0%
GGAACAATTGCAAAGCCTGA+AGG - chr1_4:69198421-69198440 None:intergenic 45.0%
GGCTTTGCAATTGTTCCTGA+TGG + chr1_4:69198424-69198443 Msa0181090:CDS 45.0%
ACTTTACAGAAAGGTGGTGC+TGG + chr1_4:69198481-69198500 Msa0181090:CDS 45.0%
CACAGTCGGATTCCAAATTC+TGG + chr1_4:69198525-69198544 Msa0181090:CDS 45.0%
! AACTGACTCCATTGTGAGCT+TGG - chr1_4:69198569-69198588 None:intergenic 45.0%
TAGGAAGGGTTGCTTAAGGA+AGG + chr1_4:69198763-69198782 Msa0181090:three_prime_UTR 45.0%
CAAGAACGAACCGCGAAAAA+AGG + chr1_4:69198794-69198813 Msa0181090:three_prime_UTR 45.0%
GAATGCAAAGACTAACTCGC+AGG - chr1_4:69198914-69198933 None:intergenic 45.0%
!! CAGAGTGAGATTGGTCTCAC+TGG + chr1_4:69194723-69194742 Msa0181090:CDS 50.0%
TCTGCTTGGGAGAATGAGAG+AGG + chr1_4:69194764-69194783 Msa0181090:CDS 50.0%
GATGAGTATGAAAGCCGGTC+CGG + chr1_4:69194786-69194805 Msa0181090:CDS 50.0%
CAAAGTTATCGCTTCCGGAC+CGG - chr1_4:69194803-69194822 None:intergenic 50.0%
! TCTGGTGATGATCAGGATGG+TGG + chr1_4:69194837-69194856 Msa0181090:CDS 50.0%
! GATCAGGATGGTGGTGATGA+TGG + chr1_4:69194846-69194865 Msa0181090:CDS 50.0%
CGATCTGAGTTGCGGCATTA+AGG + chr1_4:69195193-69195212 Msa0181090:intron 50.0%
! GTCTGGAACTTGGTATCGGA+AGG + chr1_4:69195666-69195685 Msa0181090:CDS 50.0%
!! GGTATCGGAAGGAACGGTTT+TGG + chr1_4:69195677-69195696 Msa0181090:CDS 50.0%
!! ATCGGAAGGAACGGTTTTGG+TGG + chr1_4:69195680-69195699 Msa0181090:CDS 50.0%
CATTGGCAAAGGATTGCCGA+GGG - chr1_4:69195717-69195736 None:intergenic 50.0%
CTCGGCAATCCTTTGCCAAT+GGG + chr1_4:69195716-69195735 Msa0181090:CDS 50.0%
TCTCCGAGATCAAGTCCCAT+TGG - chr1_4:69195734-69195753 None:intergenic 50.0%
ATGGGACTTGATCTCGGAGA+TGG + chr1_4:69195734-69195753 Msa0181090:CDS 50.0%
! TGTATTGGTCCTAAACCCGC+TGG + chr1_4:69195968-69195987 Msa0181090:CDS 50.0%
AGCTTCAGCGACAAAACCAG+CGG - chr1_4:69195987-69196006 None:intergenic 50.0%
GCTGAAGCTACGAGAGAAAC+CGG + chr1_4:69195998-69196017 Msa0181090:CDS 50.0%
CTGAAGCTACGAGAGAAACC+GGG + chr1_4:69195999-69196018 Msa0181090:CDS 50.0%
GGATTCTCACTTGACGAACC+GGG - chr1_4:69196467-69196486 None:intergenic 50.0%
! CATGCTGCTTACAGAACCGA+AGG - chr1_4:69196488-69196507 None:intergenic 50.0%
! AGCAGCATGCAGAAGGTGTA+TGG + chr1_4:69196499-69196518 Msa0181090:CDS 50.0%
! GCAGCATGCAGAAGGTGTAT+GGG + chr1_4:69196500-69196519 Msa0181090:CDS 50.0%
! TCCTTCTGGCTGTATTGTGC+AGG + chr1_4:69196596-69196615 Msa0181090:CDS 50.0%
TCCTGCACAATACAGCCAGA+AGG - chr1_4:69196600-69196619 None:intergenic 50.0%
AGGTCACTTGGATTGAGCAC+TGG + chr1_4:69197410-69197429 Msa0181090:intron 50.0%
GGTCACTTGGATTGAGCACT+GGG + chr1_4:69197411-69197430 Msa0181090:intron 50.0%
! TTTGCAGCATTGAGCCAAGC+TGG + chr1_4:69197678-69197697 Msa0181090:intron 50.0%
AATGGGACAGCCTCCAAATG+GGG + chr1_4:69197778-69197797 Msa0181090:CDS 50.0%
CATCACTCAGAGTCCCCATT+TGG - chr1_4:69197794-69197813 None:intergenic 50.0%
ATTGCCAAAGGTCAAGGGCA+AGG + chr1_4:69198002-69198021 Msa0181090:CDS 50.0%
GTTTCCTTGCCCTTGACCTT+TGG - chr1_4:69198009-69198028 None:intergenic 50.0%
GATGGATACATCTTGCTCGG+TGG + chr1_4:69198318-69198337 Msa0181090:CDS 50.0%
GTGGTGTATGCACCAGTTGA+CGG + chr1_4:69198340-69198359 Msa0181090:CDS 50.0%
TGGTGTATGCACCAGTTGAC+GGG + chr1_4:69198341-69198360 Msa0181090:CDS 50.0%
CCAGAGGGATCATTACCATC+AGG - chr1_4:69198442-69198461 None:intergenic 50.0%
! CCTGATGGTAATGATCCCTC+TGG + chr1_4:69198439-69198458 Msa0181090:CDS 50.0%
GGTAATGATCCCTCTGGCTA+CGG + chr1_4:69198445-69198464 Msa0181090:CDS 50.0%
TTTGACATGCCGTAGCCAGA+GGG - chr1_4:69198457-69198476 None:intergenic 50.0%
ATTTGACATGCCGTAGCCAG+AGG - chr1_4:69198458-69198477 None:intergenic 50.0%
TCTGGCTACGGCATGTCAAA+TGG + chr1_4:69198457-69198476 Msa0181090:CDS 50.0%
! GGTGGAAGTTTGCTCACAGT+CGG + chr1_4:69198511-69198530 Msa0181090:CDS 50.0%
TCCAACTGCCAAGCTCACAA+TGG + chr1_4:69198558-69198577 Msa0181090:CDS 50.0%
TCCATTGTGAGCTTGGCAGT+TGG - chr1_4:69198562-69198581 None:intergenic 50.0%
ACCGCGAAAAAAGGAACTCG+TGG + chr1_4:69198803-69198822 Msa0181090:three_prime_UTR 50.0%
!!! GCCACGAGTTCCTTTTTTCG+CGG - chr1_4:69198807-69198826 None:intergenic 50.0%
ATGGAGGGGCAGAGTGAGAT+TGG + chr1_4:69194714-69194733 Msa0181090:CDS 55.0%
!! GTGATGATGGTCAGCGCAAG+AGG + chr1_4:69194859-69194878 Msa0181090:CDS 55.0%
TGCAGTCGCGATCTGAGTTG+CGG + chr1_4:69195185-69195204 Msa0181090:intron 55.0%
CGGCTTAGGCAACCTTGTTG+TGG - chr1_4:69195231-69195250 None:intergenic 55.0%
!! TGTGGTGGACCAGCAATTCC+TGG + chr1_4:69195494-69195513 Msa0181090:CDS 55.0%
!! GGAAGGAACGGTTTTGGTGG+TGG + chr1_4:69195683-69195702 Msa0181090:CDS 55.0%
CCATTGGCAAAGGATTGCCG+AGG - chr1_4:69195718-69195737 None:intergenic 55.0%
CCTCGGCAATCCTTTGCCAA+TGG + chr1_4:69195715-69195734 Msa0181090:CDS 55.0%
! GCGACAAAACCAGCGGGTTT+AGG - chr1_4:69195980-69195999 None:intergenic 55.0%
GCTTCAGCGACAAAACCAGC+GGG - chr1_4:69195986-69196005 None:intergenic 55.0%
ACTTGACGAACCGGGACTAG+TGG - chr1_4:69196459-69196478 None:intergenic 55.0%
AGCAGCAGAGAACTGGATCC+AGG - chr1_4:69197069-69197088 None:intergenic 55.0%
GAGGTGAATCCCGACACACT+TGG - chr1_4:69197202-69197221 None:intergenic 55.0%
! TTCACACTGCCTTTGGAGGG+TGG - chr1_4:69197518-69197537 None:intergenic 55.0%
ACCCTCCAAAGGCAGTGTGA+AGG + chr1_4:69197517-69197536 Msa0181090:CDS 55.0%
GCCTTCACACTGCCTTTGGA+GGG - chr1_4:69197521-69197540 None:intergenic 55.0%
AGCCTTCACACTGCCTTTGG+AGG - chr1_4:69197522-69197541 None:intergenic 55.0%
CCAAGCCTTCACACTGCCTT+TGG - chr1_4:69197525-69197544 None:intergenic 55.0%
CCAAAGGCAGTGTGAAGGCT+TGG + chr1_4:69197522-69197541 Msa0181090:CDS 55.0%
CACTCAGAGTCCCCATTTGG+AGG - chr1_4:69197791-69197810 None:intergenic 55.0%
TGCAGCGCTAAGCACGATAC+CGG - chr1_4:69197865-69197884 None:intergenic 55.0%
! TGGTGGACCCATGCAAGAGA+TGG + chr1_4:69197974-69197993 Msa0181090:CDS 55.0%
! GGATACATCTTGCTCGGTGG+TGG + chr1_4:69198321-69198340 Msa0181090:CDS 55.0%
! GGTGGTGGTTCAAGCTCCCT+CGG + chr1_4:69195698-69195717 Msa0181090:CDS 60.0%
GGAGATGGTCGCTCAATGCC+TGG + chr1_4:69195749-69195768 Msa0181090:CDS 60.0%
! TGCAGAAGGTGTATGGGCCG+TGG + chr1_4:69196506-69196525 Msa0181090:CDS 60.0%
GATGGATCGCCACCCTCCAA+AGG + chr1_4:69197506-69197525 Msa0181090:CDS 60.0%
GCAGCGCTAAGCACGATACC+GGG - chr1_4:69197864-69197883 None:intergenic 60.0%
!! CAGAAAGGTGGTGCTGGCGA+TGG + chr1_4:69198487-69198506 Msa0181090:CDS 60.0%
!! AAAGGTGGTGCTGGCGATGG+TGG + chr1_4:69198490-69198509 Msa0181090:CDS 60.0%
GGAACTCGTGGCGTTGCTGA+TGG + chr1_4:69198815-69198834 Msa0181090:three_prime_UTR 60.0%
GCGCTAAGCACGATACCGGG+AGG - chr1_4:69197861-69197880 None:intergenic 65.0%
GATGACCCTGGCGAGCCTCC+CGG + chr1_4:69197843-69197862 Msa0181090:CDS 70.0%
CGATACCGGGAGGCTCGCCA+GGG - chr1_4:69197851-69197870 None:intergenic 70.0%
ACGATACCGGGAGGCTCGCC+AGG - chr1_4:69197852-69197871 None:intergenic 70.0%
!! GGTGGTGCTGGCGATGGTGG+TGG + chr1_4:69198493-69198512 Msa0181090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69193892 69199034 69193892 ID=Msa0181090;Name=Msa0181090
chr1_4 mRNA 69193892 69199034 69193892 ID=Msa0181090-mRNA-1;Parent=Msa0181090;Name=Msa0181090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=570|1|1|1|0.87|0.77|9|380|792
chr1_4 exon 69193892 69194569 69193892 ID=Msa0181090-mRNA-1:exon:22974;Parent=Msa0181090-mRNA-1
chr1_4 exon 69194705 69194931 69194705 ID=Msa0181090-mRNA-1:exon:22975;Parent=Msa0181090-mRNA-1
chr1_4 exon 69195028 69195145 69195028 ID=Msa0181090-mRNA-1:exon:22976;Parent=Msa0181090-mRNA-1
chr1_4 exon 69195386 69196069 69195386 ID=Msa0181090-mRNA-1:exon:22977;Parent=Msa0181090-mRNA-1
chr1_4 exon 69196245 69196346 69196245 ID=Msa0181090-mRNA-1:exon:22978;Parent=Msa0181090-mRNA-1
chr1_4 exon 69196429 69196641 69196429 ID=Msa0181090-mRNA-1:exon:22979;Parent=Msa0181090-mRNA-1
chr1_4 exon 69197412 69197586 69197412 ID=Msa0181090-mRNA-1:exon:22980;Parent=Msa0181090-mRNA-1
chr1_4 exon 69197685 69198052 69197685 ID=Msa0181090-mRNA-1:exon:22981;Parent=Msa0181090-mRNA-1
chr1_4 exon 69198271 69199034 69198271 ID=Msa0181090-mRNA-1:exon:22982;Parent=Msa0181090-mRNA-1
chr1_4 five_prime_UTR 69193892 69194461 69193892 ID=Msa0181090-mRNA-1:five_prime_utr;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69194462 69194569 69194462 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69194705 69194931 69194705 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69195028 69195145 69195028 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69195386 69196069 69195386 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69196245 69196346 69196245 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69196429 69196641 69196429 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69197412 69197586 69197412 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69197685 69198052 69197685 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 CDS 69198271 69198654 69198271 ID=Msa0181090-mRNA-1:cds;Parent=Msa0181090-mRNA-1
chr1_4 three_prime_UTR 69198655 69199034 69198655 ID=Msa0181090-mRNA-1:three_prime_utr;Parent=Msa0181090-mRNA-1
Gene Sequence

>Msa0181090

ATGGGGTTTGAGAGTGTGAACAGTTCCTGTAAGGTTGCAAGACTTGTCACTGATATTTCTATACCCTTTTCTAGTTCAATGCAAAATCCATCTTCTTTCTTATCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATTGGTCTCACTGGTGATAGCTTAGATACTGGTCTGCTTGGGAGAATGAGAGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGAATATCTGGTGATGATCAGGATGGTGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGCAAGAGACTTGGCTTGGAAAATAAACAAGTCAAATTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGCATGATGAAAGAAGCAATGGTGAATCCAATATGCAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTCGAAGAGCACCAGATTAGAATTGAAAACGCTCGTCTAAAGGACGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCATCCTCAAATTCTGGTCTGGAACTTGGTATCGGAAGGAACGGTTTTGGTGGTGGTTCAAGCTCCCTCGGCAATCCTTTGCCAATGGGACTTGATCTCGGAGATGGTCGCTCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAGTAGCAGTGATGTTCAGCTTGAGAGATCGGCTCTAATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGCTTGGATGGAGAGAGAGACATATTGAATCAAGAAGAGTATGCACGGTTGATTTCTTCTTGTATTGGTCCTAAACCCGCTGGTTTTGTCGCTGAAGCTACGAGAGAAACCGGGATAGTAATAATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGATACGCAGATATGTTTCAGTCTATGATTGCTAGATCTGCCAACCTTGATGTTTTATCTGGTGGAATCGGTGGAACAAGAAATGGTGCTATACATTTGATGCATACTGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTGAGAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATTGGTCATGATCCTTCTAATGCACAACCATTCATAAGCTGTAGAAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCACTGGGAGTATGATGAGAGTGTTGTTCACCAACTCTATCGTCCGTTGCTTATTTCTGGTTTTGGATTTGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAACGATGATCACACCGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGTATGACCAACAACTTCTGTTCTGGGGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTCCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATCGTGCTTAGCGCTGCAACATCTGTTTGGATGCCAGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCCATGCAAGAGATGGTTCACATTGCCAAAGGTCAAGGGCAAGGAAACTGCGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAAACTTGGATGGATACATCTTGCTCGGTGGTGGTGTATGCACCAGTTGACGGGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCAATTGTTCCTGATGGTAATGATCCCTCTGGCTACGGCATGTCAAATGGTACTTTACAGAAAGGTGGTGCTGGCGATGGTGGTGGAAGTTTGCTCACAGTCGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCCAAGCTCACAATGGAGTCAGTTGATACTGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA
Protein sequence

>Msa0181090

MGFESVNSSCKVARLVTDISIPFSSSMQNPSSFLSTQRKMEGQSEIGLTGDSLDTGLLGRMREDEYESRSGSDNFDLEGISGDDQDGGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPSSNSGLELGIGRNGFGGGSSSLGNPLPMGLDLGDGRSMPGISSPMGLMGSSSDVQLERSALIDLALAAMDELLKMAQTDSPVWIKGLDGERDILNQEEYARLISSCIGPKPAGFVAEATRETGIVIINSLALVETLMDANRYADMFQSMIARSANLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDPSGYGMSNGTLQKGGAGDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA*