AlfalfaGEDB | Msa0667970

M. sativa cultivar zhongmu-4 / Msa0667970

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896
PFAM: PF00581.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667970	XP_013454834.3	98.214	224	4	0	1	224	1	224	1.24e-162	458

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667970	sp\|Q9SR92\|STR10_ARATH	60.000	180	68	1	32	211	23	198	2.51e-78	237

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667970	G8A2L4	98.214	224	4	0	1	224	1	224	5.94e-163	458

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0667970	0.862762	4.028528e-64	-8.615850e-47
Msa0001460	Msa0667970	0.876133	1.778704e-68	-8.615850e-47
Msa0001540	Msa0667970	0.816904	4.347919e-52	-8.615850e-47
Msa0001950	Msa0667970	0.866582	2.566646e-65	-8.615850e-47
Msa0003470	Msa0667970	0.904400	1.277135e-79	-8.615850e-47
Msa0004350	Msa0667970	0.860898	1.497582e-63	-8.615850e-47
Msa0004360	Msa0667970	0.802492	5.468457e-49	-8.615850e-47
Msa0004610	Msa0667970	0.812510	4.088845e-51	-8.615850e-47
Msa0005160	Msa0667970	0.802110	6.554363e-49	-8.615850e-47
Msa0006050	Msa0667970	0.810035	1.407970e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667970	MtrunA17_Chr4g0006411	98.214	224	4	0	1	224	1	224	1.14e-166	458
Msa0667970	MtrunA17_Chr3g0116671	34.804	204	125	4	13	212	39	238	3.58e-30	113
Msa0667970	MtrunA17_Chr7g0258361	35.333	150	95	2	58	207	47	194	4.64e-25	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667970	AT3G08920.1	60.000	180	68	1	32	211	23	198	2.55e-79	237
Msa0667970	AT4G24750.1	42.236	161	91	2	52	212	82	240	8.38e-34	123
Msa0667970	AT2G42220.1	32.335	167	111	2	41	207	32	196	4.20e-25	99.0

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Find 61 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCATACAGTTCTTAG+TGG	0.468410	4_4:-8764423	Msa0667970:five_prime_UTR
AAATTAGTACTTTAAATTGT+AGG	0.331772	4_4:-8756227	Msa0667970:three_prime_UTR
AAGTTGAAGTATGCTACAAT+TGG	0.491595	4_4:-8756787	Msa0667970:CDS
AATCGATGACATGTTTGATT+TGG	0.280561	4_4:-8756580	Msa0667970:three_prime_UTR
AATCTTGGATGGTTAGTTGG+AGG	0.498346	4_4:-8756859	Msa0667970:CDS
AATGGAGGTTACAGAAATCT+TGG	0.420169	4_4:-8756874	Msa0667970:CDS
ACCAAGGTTCTTGTGGCCTG+TGG	0.566356	4_4:-8763919	Msa0667970:CDS
ACCCAATTGGGAAAGAGAGA+AGG	0.609153	4_4:-8764121	Msa0667970:CDS
ACTTCAAAGCTGTATAATGG+AGG	0.653802	4_4:-8756889	Msa0667970:CDS
AGAAATCTTGGATGGTTAGT+TGG	0.408746	4_4:-8756862	Msa0667970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCCATAGCATCACAATA+TGG	-	chr4_4:8756198-8756217	Msa0667970:three_prime_UTR	30.0%
TTGTCTAGCACTCATATTAT+TGG	+	chr4_4:8756350-8756369	None:intergenic	30.0%
TTTGTGGAAGATAAGGATAA+TGG	-	chr4_4:8756514-8756533	Msa0667970:three_prime_UTR	30.0%
GAAGGATTAAGGTAAATATG+TGG	-	chr4_4:8756685-8756704	Msa0667970:three_prime_UTR	30.0%
AGACTATATGGACAAAACTT+AGG	+	chr4_4:8756934-8756953	None:intergenic	30.0%
TAAACACAAATTCCCATGTT+GGG	-	chr4_4:8756988-8757007	Msa0667970:intron	30.0%
GTTGTGTGAATTGAAAAAAG+TGG	-	chr4_4:8757021-8757040	Msa0667970:intron	30.0%
TAGTAGTGTTTATATAGTGG+GGG	-	chr4_4:8757073-8757092	Msa0667970:intron	30.0%
AGGGACTTATATTATCGAAA+GGG	+	chr4_4:8757707-8757726	None:intergenic	30.0%
AAGGGACTTATATTATCGAA+AGG	+	chr4_4:8757708-8757727	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	8756157	8764445	8756157	ID=Msa0667970;Name=Msa0667970
chr4_4	mRNA	8756157	8764445	8756157	ID=Msa0667970-mRNA-1;Parent=Msa0667970;Name=Msa0667970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=60\|1\|1\|1\|1\|1\|2\|572\|224
chr4_4	exon	8756157	8756924	8756157	ID=Msa0667970-mRNA-1:exon:2795;Parent=Msa0667970-mRNA-1
chr4_4	exon	8763907	8764445	8763907	ID=Msa0667970-mRNA-1:exon:2794;Parent=Msa0667970-mRNA-1
chr4_4	five_prime_UTR	8764386	8764445	8764386	ID=Msa0667970-mRNA-1:five_prime_utr;Parent=Msa0667970-mRNA-1
chr4_4	CDS	8763907	8764385	8763907	ID=Msa0667970-mRNA-1:cds;Parent=Msa0667970-mRNA-1
chr4_4	CDS	8756729	8756924	8756729	ID=Msa0667970-mRNA-1:cds;Parent=Msa0667970-mRNA-1
chr4_4	three_prime_UTR	8756157	8756728	8756157	ID=Msa0667970-mRNA-1:three_prime_utr;Parent=Msa0667970-mRNA-1

Gene Sequence

>Msa0667970

ATGGCAACTCATTTGAAGTACAATCTATTCAACACTTCAACACTTCAAAAACACAAAACACAAAAACAAAACAACTCTTTCACTACAATCACACAAAAAACATCAAGATTTCATGTTATCAATGCAACATCCAATAATATGAGTGCTAGACAACTCATAGAATCTGGTACAATAAGAACAATTTTGCCAAAAGATGCTTCAACAGTTCTGAACTCAGAAGGTTTCATTCTTCTTGATGTTAGACCCAATTGGGAAAGAGAGAAGGCACATGTGAAAGGTTCTTTGCATGTGCCAATGTTTGTGGAAGATAAGGATAATGGTCCTTTAACTTTGCTTAAGAAATGGGTTCATTTTGGTTACATTGGTGCTTGGACTGGTCAATATCTTACTACTTTTAACTCTGAGTTTCTTAGTCAAGTGGAAAATGTTGTTCCTGGTAAAGATACCAAGGTTCTTGTGGCCTGTGGAGAAGGATTAAGGTCAATGACAGCAACTTCAAAGCTGTATAATGGAGGTTACAGAAATCTTGGATGGTTAGTTGGAGGCTTTAGTCGTTCAAAAGACGATGATTTCTCAGAAGTTGAAGGAAAAGAGAAGTTGAAGTATGCTACAATTGGAGGAGCCTCTTATTACTTCCTTCAGCTGCTCATACTTCTACAGACAGTGAGTAAATAG

Protein sequence

>Msa0667970

MATHLKYNLFNTSTLQKHKTQKQNNSFTTITQKTSRFHVINATSNNMSARQLIESGTIRTILPKDASTVLNSEGFILLDVRPNWEREKAHVKGSLHVPMFVEDKDNGPLTLLKKWVHFGYIGAWTGQYLTTFNSEFLSQVENVVPGKDTKVLVACGEGLRSMTATSKLYNGGYRNLGWLVGGFSRSKDDDFSEVEGKEKLKYATIGGASYYFLQLLILLQTVSK*