Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643820 | XP_013468295.1 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 5.25e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643820 | sp|Q9M5L0|RL35_EUPES | 90.756 | 119 | 11 | 0 | 3 | 121 | 4 | 122 | 1.87e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643820 | I3T617 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 2.51e-72 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044010 | Msa0643820 | 0.806691 | 7.274293e-50 | -8.615850e-47 |
| Msa0072570 | Msa0643820 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa0643820 | Msa0705800 | 0.800494 | 1.403532e-48 | -8.615850e-47 |
| Msa0643820 | Msa0712610 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa0643820 | Msa0781080 | 0.819032 | 1.436624e-52 | -8.615850e-47 |
| Msa0643820 | Msa0788380 | 0.804449 | 2.148625e-49 | -8.615850e-47 |
| Msa0643820 | Msa0822580 | 0.801594 | 8.364973e-49 | -8.615850e-47 |
| Msa0643820 | Msa1040160 | 0.823186 | 1.586076e-53 | -8.615850e-47 |
| Msa0643820 | Msa1054280 | 0.832638 | 8.431358e-56 | -8.615850e-47 |
| Msa0643820 | Msa1058700 | 0.814036 | 1.889963e-51 | -8.615850e-47 |
| Msa0643820 | Msa1082170 | 0.863044 | 3.295937e-64 | -8.615850e-47 |
| Msa0643820 | Msa1083370 | 0.819608 | 1.062191e-52 | -8.615850e-47 |
| Msa0643820 | Msa1096900 | 0.811903 | 5.547582e-51 | -8.615850e-47 |
| Msa0643820 | Msa1126520 | 0.824317 | 8.617700e-54 | -8.615850e-47 |
| Msa0643820 | Msa1167540 | 0.808222 | 3.442733e-50 | -8.615850e-47 |
| Msa0643820 | Msa1186030 | 0.810794 | 9.653643e-51 | -8.615850e-47 |
| Msa0643820 | Msa1258540 | 0.834766 | 2.479629e-56 | -8.615850e-47 |
| Msa0643820 | Msa1356790 | 0.830000 | 3.757288e-55 | -8.615850e-47 |
| Msa0643820 | Msa1364110 | 0.801054 | 1.079167e-48 | -8.615850e-47 |
| Msa0643820 | Msa1392590 | 0.829744 | 4.336752e-55 | -8.615850e-47 |
| Msa0481520 | Msa0643820 | 0.807989 | 3.859398e-50 | -8.615850e-47 |
| Msa0298870 | Msa0643820 | 0.803623 | 3.191352e-49 | -8.615850e-47 |
| Msa0335840 | Msa0643820 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
| Msa0596370 | Msa0643820 | 0.808673 | 2.758646e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643820 | MtrunA17_Chr1g0182051 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 4.83e-76 | 221 |
| Msa0643820 | MtrunA17_Chr4g0030641 | 94.215 | 121 | 7 | 0 | 2 | 122 | 3 | 123 | 8.74e-76 | 220 |
| Msa0643820 | MtrunA17_Chr1g0212921 | 90.000 | 120 | 12 | 0 | 3 | 122 | 2 | 121 | 5.26e-72 | 210 |
| Msa0643820 | MtrunA17_Chr4g0036351 | 90.756 | 119 | 11 | 0 | 4 | 122 | 3 | 121 | 3.79e-71 | 208 |
| Msa0643820 | MtrunA17_Chr7g0249361 | 85.000 | 120 | 18 | 0 | 3 | 122 | 49 | 168 | 6.96e-66 | 196 |
| Msa0643820 | MtrunA17_Chr1g0206641 | 87.179 | 39 | 5 | 0 | 10 | 48 | 2 | 40 | 1.10e-15 | 65.9 |
| Msa0643820 | MtrunA17_Chr5g0419591 | 82.353 | 34 | 6 | 0 | 66 | 99 | 2 | 35 | 1.12e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643820 | AT2G39390.1 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 5.66e-68 | 201 |
| Msa0643820 | AT3G09500.1 | 85.714 | 119 | 17 | 0 | 3 | 121 | 4 | 122 | 3.50e-67 | 199 |
| Msa0643820 | AT5G02610.1 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 3.57e-67 | 198 |
| Msa0643820 | AT3G55170.5 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0643820 | AT3G55170.2 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0643820 | AT3G55170.1 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0643820 | AT5G02610.2 | 72.535 | 142 | 16 | 1 | 3 | 121 | 4 | 145 | 2.01e-61 | 185 |
| Msa0643820 | AT3G55170.4 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
| Msa0643820 | AT3G55170.3 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
Find 41 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGCTCTTGTCTTCT+TGG | 0.184523 | 4_3:+47218169 | None:intergenic |
| AGCATTGAGGGAAGTTTATA+AGG | 0.261646 | 4_3:-47218222 | Msa0643820:CDS |
| GGTCCAACATTACGCCTTAA+TGG | 0.287059 | 4_3:+47216835 | None:intergenic |
| TACATCTTGGAAAGCTTGTT+TGG | 0.300449 | 4_3:+47218691 | None:intergenic |
| CTAATAGCTCTTGTCTTCTT+GGG | 0.344589 | 4_3:+47218170 | None:intergenic |
| TTTAACTTATCTTCATGAAA+TGG | 0.348353 | 4_3:-47216727 | Msa0643820:three_prime_UTR |
| ACATCTTGGAAAGCTTGTTT+GGG | 0.366421 | 4_3:+47218692 | None:intergenic |
| CATGAATTTCGATTTGTTGT+TGG | 0.373914 | 4_3:-47216802 | Msa0643820:three_prime_UTR |
| TAATGAATGACTTGTGGTTT+GGG | 0.398323 | 4_3:-47216567 | Msa0643820:three_prime_UTR |
| AGTGAGAAAGTATGCCATTA+AGG | 0.406198 | 4_3:-47216849 | Msa0643820:CDS |
| AACAATATATAATCTGAAAC+TGG | 0.407053 | 4_3:+47216664 | None:intergenic |
| GGGCAAGAAGTACTTGCCTT+TGG | 0.416589 | 4_3:-47218201 | Msa0643820:CDS |
| TTTGAACGCAATAGCTATCA+AGG | 0.421455 | 4_3:-47218818 | Msa0643820:intron |
| GCGATTCAAGATCTGCGAAA+TGG | 0.425071 | 4_3:-47218937 | Msa0643820:exon |
| TCGAAATTCATGCAAAAGAA+AGG | 0.425679 | 4_3:+47216813 | None:intergenic |
| CGATTCAAGATCTGCGAAAT+GGG | 0.431683 | 4_3:-47218936 | Msa0643820:intron |
| TTAATGAATGACTTGTGGTT+TGG | 0.439281 | 4_3:-47216568 | Msa0643820:three_prime_UTR |
| TTGGATGCAGCAAGGTTGTT+CGG | 0.445039 | 4_3:-47218292 | Msa0643820:intron |
| GAAGATAAGTTAAACTCAAA+AGG | 0.456428 | 4_3:+47216736 | None:intergenic |
| GCATTGAGGGAAGTTTATAA+GGG | 0.470641 | 4_3:-47218221 | Msa0643820:CDS |
| GAAGTCACGTTGAAAACATA+GGG | 0.482415 | 4_3:+47216521 | None:intergenic |
| CTTCGCGTTGCGAAAGTCAC+CGG | 0.488670 | 4_3:-47218721 | Msa0643820:CDS |
| AAGCTTGTTTGGGGCACCGC+CGG | 0.495153 | 4_3:+47218702 | None:intergenic |
| GAAACAAAAGACAGCATTGA+GGG | 0.506620 | 4_3:-47218234 | Msa0643820:CDS |
| CGAAATTCATGCAAAAGAAA+GGG | 0.512267 | 4_3:+47216814 | None:intergenic |
| AAGACGCCTCACTAAGCATC+AGG | 0.512300 | 4_3:-47218147 | Msa0643820:intron |
| TTAATGGCATACTTTCTCAC+TGG | 0.517469 | 4_3:+47216851 | None:intergenic |
| AGAAGTCACGTTGAAAACAT+AGG | 0.522548 | 4_3:+47216520 | None:intergenic |
| ATCGCCGCGAGAAAACTTGT+TGG | 0.536369 | 4_3:+47218955 | None:intergenic |
| TTCTTGGGACGGAGATCCAA+AGG | 0.574336 | 4_3:+47218185 | None:intergenic |
| TAGCTCTTGTCTTCTTGGGA+CGG | 0.580244 | 4_3:+47218174 | None:intergenic |
| TAATGGCATACTTTCTCACT+GGG | 0.582481 | 4_3:+47216852 | None:intergenic |
| GACAGAGCGTGAGAAGAAGA+AGG | 0.584517 | 4_3:-47216885 | Msa0643820:CDS |
| ATGCCATTAAGGCGTAATGT+TGG | 0.585342 | 4_3:-47216838 | Msa0643820:exon |
| GATCGTTAATGAATGACTTG+TGG | 0.606719 | 4_3:-47216573 | Msa0643820:three_prime_UTR |
| CATCTTGGAAAGCTTGTTTG+GGG | 0.612959 | 4_3:+47218693 | None:intergenic |
| CTATCAAGGTTTATGAGCTG+AGG | 0.615557 | 4_3:-47218804 | Msa0643820:CDS |
| CGCGTTGCGAAAGTCACCGG+CGG | 0.627530 | 4_3:-47218718 | Msa0643820:CDS |
| AGAAACAAAAGACAGCATTG+AGG | 0.664403 | 4_3:-47218235 | Msa0643820:CDS |
| CATGTACCTGATGCTTAGTG+AGG | 0.666111 | 4_3:+47218141 | None:intergenic |
| AAGTCACGTTGAAAACATAG+GGG | 0.718692 | 4_3:+47216522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTACAATTATAATTAT+GGG | - | chr4_3:47218212-47218231 | Msa0643820:CDS | 10.0% |
| !! | AAATTTAGAGAATAGAATAA+AGG | + | chr4_3:47216597-47216616 | None:intergenic | 15.0% |
| !!! | TTTGTTTTAATTTAAATACG+CGG | - | chr4_3:47216891-47216910 | Msa0643820:CDS | 15.0% |
| !!! | AGCAAAAAAACTATTTTTTT+AGG | + | chr4_3:47217110-47217129 | None:intergenic | 15.0% |
| !!! | TGAATTAATTTGATGAAATT+CGG | - | chr4_3:47217427-47217446 | Msa0643820:intron | 15.0% |
| !! | ATTATGAAAAAATGAGTAAA+TGG | + | chr4_3:47218151-47218170 | None:intergenic | 15.0% |
| !!! | TTTTTTCATAATTGTTTATG+TGG | - | chr4_3:47218159-47218178 | Msa0643820:CDS | 15.0% |
| !! | CTTTGTTACAATTATAATTA+TGG | - | chr4_3:47218211-47218230 | Msa0643820:CDS | 15.0% |
| !! | TTGTTACAATTATAATTATG+GGG | - | chr4_3:47218213-47218232 | Msa0643820:CDS | 15.0% |
| !! | TATAAGCTTTCTTAATAAAA+TGG | - | chr4_3:47218542-47218561 | Msa0643820:intron | 15.0% |
| !!! | TGATCTATAGTAATTTTGAT+TGG | + | chr4_3:47216978-47216997 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+AGG | - | chr4_3:47217021-47217040 | Msa0643820:intron | 20.0% |
| !!! | TGATTGTTTTTGTTATTGTT+TGG | - | chr4_3:47217180-47217199 | Msa0643820:intron | 20.0% |
| !!! | TTAATAGTTTGTAAAGTTTG+TGG | - | chr4_3:47217501-47217520 | Msa0643820:intron | 20.0% |
| !! | AATGTAAACATTATTGTTCT+AGG | - | chr4_3:47217640-47217659 | Msa0643820:intron | 20.0% |
| !! | ATGTAAACATTATTGTTCTA+GGG | - | chr4_3:47217641-47217660 | Msa0643820:intron | 20.0% |
| !!! | GACAATGTTCTAAAAATATT+TGG | - | chr4_3:47218711-47218730 | Msa0643820:CDS | 20.0% |
| !!! | TTTAACTTATCTTCATGAAA+TGG | - | chr4_3:47218764-47218783 | Msa0643820:CDS | 20.0% |
| !!! | AACAATATATAATCTGAAAC+TGG | + | chr4_3:47218830-47218849 | None:intergenic | 20.0% |
| ! | TAGAGAATAGAATAAAGGAT+TGG | + | chr4_3:47216592-47216611 | None:intergenic | 25.0% |
| ! | ATGAGTACAAAAAATGATGT+TGG | + | chr4_3:47216624-47216643 | None:intergenic | 25.0% |
| ! | AATTAAGTGCAATAGAATAG+CGG | + | chr4_3:47216834-47216853 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr4_3:47217122-47217141 | None:intergenic | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | - | chr4_3:47217046-47217065 | Msa0643820:intron | 25.0% |
| ! | ATGTATGTGGTCTATATTAA+TGG | - | chr4_3:47217059-47217078 | Msa0643820:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr4_3:47217122-47217141 | Msa0643820:intron | 25.0% |
| ! | ATAATGATTTCCATGATGTA+TGG | - | chr4_3:47217556-47217575 | Msa0643820:intron | 25.0% |
| !!! | CTAGAGTGTCTTTTAAATAT+TGG | - | chr4_3:47217606-47217625 | Msa0643820:intron | 25.0% |
| !! | TCTTTTAAATATTGGAGTTC+TGG | - | chr4_3:47217614-47217633 | Msa0643820:intron | 25.0% |
| !! | AAGCTATCTTTGTAGATTTT+TGG | - | chr4_3:47217676-47217695 | Msa0643820:intron | 25.0% |
| !! | AGCTATCTTTGTAGATTTTT+GGG | - | chr4_3:47217677-47217696 | Msa0643820:intron | 25.0% |
| ! | TGAAAAAATGAGTAAATGGT+TGG | + | chr4_3:47218147-47218166 | None:intergenic | 25.0% |
| !! | ATTTTATCAATGTGCCTTAT+TGG | - | chr4_3:47218282-47218301 | Msa0643820:CDS | 25.0% |
| !!! | ACATACATGTTTTGACTTTT+AGG | - | chr4_3:47218400-47218419 | Msa0643820:intron | 25.0% |
| !!! | CATACATGTTTTGACTTTTA+GGG | - | chr4_3:47218401-47218420 | Msa0643820:intron | 25.0% |
| !! | ATAGCTTCTTATGATGTTTT+CGG | - | chr4_3:47218469-47218488 | Msa0643820:intron | 25.0% |
| ! | GAAGATAAGTTAAACTCAAA+AGG | + | chr4_3:47218758-47218777 | None:intergenic | 25.0% |
| TTGCGTTCAAAAAAGAAGAA+AGG | + | chr4_3:47216664-47216683 | None:intergenic | 30.0% | |
| !!! | TTTTAATTTAAATACGCGGC+TGG | - | chr4_3:47216895-47216914 | Msa0643820:CDS | 30.0% |
| ! | TTTAATTTAAATACGCGGCT+GGG | - | chr4_3:47216896-47216915 | Msa0643820:CDS | 30.0% |
| TATAGATCATATATTCCCTC+CGG | - | chr4_3:47216989-47217008 | Msa0643820:intron | 30.0% | |
| CATTGAATGAATGATGTATG+TGG | + | chr4_3:47217085-47217104 | None:intergenic | 30.0% | |
| GTAAGTGTTTCTTTCTATGA+AGG | - | chr4_3:47217388-47217407 | Msa0643820:intron | 30.0% | |
| ATGAAATTCGGACTTATTCT+TGG | - | chr4_3:47217439-47217458 | Msa0643820:intron | 30.0% | |
| GTTTATGTGGACAATACTTA+TGG | - | chr4_3:47218172-47218191 | Msa0643820:CDS | 30.0% | |
| ACAATTATAATTATGGGGAC+TGG | - | chr4_3:47218218-47218237 | Msa0643820:CDS | 30.0% | |
| CAATTATAATTATGGGGACT+GGG | - | chr4_3:47218219-47218238 | Msa0643820:CDS | 30.0% | |
| AATTATAATTATGGGGACTG+GGG | - | chr4_3:47218220-47218239 | Msa0643820:CDS | 30.0% | |
| AATGGCTGAATGAATTTACT+TGG | - | chr4_3:47218560-47218579 | Msa0643820:intron | 30.0% | |
| CGAAATTCATGCAAAAGAAA+GGG | + | chr4_3:47218680-47218699 | None:intergenic | 30.0% | |
| TCGAAATTCATGCAAAAGAA+AGG | + | chr4_3:47218681-47218700 | None:intergenic | 30.0% | |
| !! | CATGAATTTCGATTTGTTGT+TGG | - | chr4_3:47218689-47218708 | Msa0643820:intron | 30.0% |
| ! | TTAATGAATGACTTGTGGTT+TGG | - | chr4_3:47218923-47218942 | Msa0643820:intron | 30.0% |
| ! | TAATGAATGACTTGTGGTTT+GGG | - | chr4_3:47218924-47218943 | Msa0643820:intron | 30.0% |
| TTTGAACGCAATAGCTATCA+AGG | - | chr4_3:47216673-47216692 | Msa0643820:three_prime_UTR | 35.0% | |
| ! | ACATCTTGGAAAGCTTGTTT+GGG | + | chr4_3:47216802-47216821 | None:intergenic | 35.0% |
| ! | TACATCTTGGAAAGCTTGTT+TGG | + | chr4_3:47216803-47216822 | None:intergenic | 35.0% |
| AGAAACAAAAGACAGCATTG+AGG | - | chr4_3:47217256-47217275 | Msa0643820:intron | 35.0% | |
| ! | GAAACAAAAGACAGCATTGA+GGG | - | chr4_3:47217257-47217276 | Msa0643820:intron | 35.0% |
| ! | AGCATTGAGGGAAGTTTATA+AGG | - | chr4_3:47217269-47217288 | Msa0643820:intron | 35.0% |
| GCATTGAGGGAAGTTTATAA+GGG | - | chr4_3:47217270-47217289 | Msa0643820:intron | 35.0% | |
| CTAATAGCTCTTGTCTTCTT+GGG | + | chr4_3:47217324-47217343 | None:intergenic | 35.0% | |
| TCTAATAGCTCTTGTCTTCT+TGG | + | chr4_3:47217325-47217344 | None:intergenic | 35.0% | |
| TTATTCTTGGTAAGCTGAGA+CGG | - | chr4_3:47217452-47217471 | Msa0643820:intron | 35.0% | |
| TTAGTGTTGTCAAATAGCAG+CGG | - | chr4_3:47217704-47217723 | Msa0643820:intron | 35.0% | |
| !! | CTTAATCTTTGACTTGCTGA+AGG | + | chr4_3:47218074-47218093 | None:intergenic | 35.0% |
| AGATTAAGCTTGAACTTGCA+TGG | - | chr4_3:47218086-47218105 | Msa0643820:intron | 35.0% | |
| ATTAATGGTACCACATGTTG+TGG | + | chr4_3:47218118-47218137 | None:intergenic | 35.0% | |
| ACATGTGGTACCATTAATTG+AGG | - | chr4_3:47218120-47218139 | Msa0643820:intron | 35.0% | |
| ! | AATGGTTGGTCCTCAATTAA+TGG | + | chr4_3:47218133-47218152 | None:intergenic | 35.0% |
| ATTATAATTATGGGGACTGG+GGG | - | chr4_3:47218221-47218240 | Msa0643820:CDS | 35.0% | |
| !! | GTTGTAGAGTTTTGCTGTAA+TGG | - | chr4_3:47218255-47218274 | Msa0643820:CDS | 35.0% |
| ATATCACCTATGCTCCAATA+AGG | + | chr4_3:47218299-47218318 | None:intergenic | 35.0% | |
| AAAACATGTATGTACGTGCT+CGG | + | chr4_3:47218393-47218412 | None:intergenic | 35.0% | |
| ACAACTTCACCAACAAAGAT+TGG | + | chr4_3:47218427-47218446 | None:intergenic | 35.0% | |
| CAACCATTCATGAAAAGTCA+AGG | + | chr4_3:47218510-47218529 | None:intergenic | 35.0% | |
| TAATGGCATACTTTCTCACT+GGG | + | chr4_3:47218642-47218661 | None:intergenic | 35.0% | |
| TTAATGGCATACTTTCTCAC+TGG | + | chr4_3:47218643-47218662 | None:intergenic | 35.0% | |
| ! | AGTGAGAAAGTATGCCATTA+AGG | - | chr4_3:47218642-47218661 | Msa0643820:intron | 35.0% |
| GATCGTTAATGAATGACTTG+TGG | - | chr4_3:47218918-47218937 | Msa0643820:intron | 35.0% | |
| AAGTCACGTTGAAAACATAG+GGG | + | chr4_3:47218972-47218991 | None:intergenic | 35.0% | |
| GAAGTCACGTTGAAAACATA+GGG | + | chr4_3:47218973-47218992 | None:intergenic | 35.0% | |
| AGAAGTCACGTTGAAAACAT+AGG | + | chr4_3:47218974-47218993 | None:intergenic | 35.0% | |
| ! | TCTACCAACAAGTTTTCTCG+CGG | - | chr4_3:47216532-47216551 | Msa0643820:three_prime_UTR | 40.0% |
| CGATTCAAGATCTGCGAAAT+GGG | - | chr4_3:47216555-47216574 | Msa0643820:three_prime_UTR | 40.0% | |
| CTATCAAGGTTTATGAGCTG+AGG | - | chr4_3:47216687-47216706 | Msa0643820:three_prime_UTR | 40.0% | |
| ! | CATCTTGGAAAGCTTGTTTG+GGG | + | chr4_3:47216801-47216820 | None:intergenic | 40.0% |
| AGCGGAAAATGCATACATCT+TGG | + | chr4_3:47216816-47216835 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr4_3:47217126-47217145 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4_3:47217125-47217144 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr4_3:47217125-47217144 | Msa0643820:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr4_3:47217126-47217145 | Msa0643820:intron | 40.0% | |
| GTTATTGTTTGGATGCAGCA+AGG | - | chr4_3:47217191-47217210 | Msa0643820:intron | 40.0% | |
| TATTCTTGGTAAGCTGAGAC+GGG | - | chr4_3:47217453-47217472 | Msa0643820:intron | 40.0% | |
| AGAGAAGCTTCCATACATCA+TGG | + | chr4_3:47217569-47217588 | None:intergenic | 40.0% | |
| GACAACACTTTGTACTACAG+CGG | + | chr4_3:47217785-47217804 | None:intergenic | 40.0% | |
| TGGAAGTAATAGAGGACTTC+GGG | + | chr4_3:47217953-47217972 | None:intergenic | 40.0% | |
| GTGGAAGTAATAGAGGACTT+CGG | + | chr4_3:47217954-47217973 | None:intergenic | 40.0% | |
| !! | TTAGGGAAGTGTTTGTCTCA+AGG | + | chr4_3:47218009-47218028 | None:intergenic | 40.0% |
| !! | TTTGACTTGCTGAAGGAATG+TGG | + | chr4_3:47218067-47218086 | None:intergenic | 40.0% |
| AGCTTGAACTTGCATGGTTT+AGG | - | chr4_3:47218092-47218111 | Msa0643820:intron | 40.0% | |
| ! | AATGTGCCTTATTGGAGCAT+AGG | - | chr4_3:47218290-47218309 | Msa0643820:intron | 40.0% |
| AAACATGTATGTACGTGCTC+GGG | + | chr4_3:47218392-47218411 | None:intergenic | 40.0% | |
| !!! | CTTTTAGGGCCAATCTTTGT+TGG | - | chr4_3:47218415-47218434 | Msa0643820:intron | 40.0% |
| ! | GTGCCTTGACTTTTCATGAA+TGG | - | chr4_3:47218504-47218523 | Msa0643820:intron | 40.0% |
| ATGCCATTAAGGCGTAATGT+TGG | - | chr4_3:47218653-47218672 | Msa0643820:intron | 40.0% | |
| GCGATTCAAGATCTGCGAAA+TGG | - | chr4_3:47216554-47216573 | Msa0643820:three_prime_UTR | 45.0% | |
| TAGCAACAACTTACTCCCTC+CGG | + | chr4_3:47217144-47217163 | None:intergenic | 45.0% | |
| TTGGATGCAGCAAGGTTGTT+CGG | - | chr4_3:47217199-47217218 | Msa0643820:intron | 45.0% | |
| TAGCTCTTGTCTTCTTGGGA+CGG | + | chr4_3:47217320-47217339 | None:intergenic | 45.0% | |
| CATGTACCTGATGCTTAGTG+AGG | + | chr4_3:47217353-47217372 | None:intergenic | 45.0% | |
| CGGATAGCAGAACAATACAC+AGG | + | chr4_3:47217765-47217784 | None:intergenic | 45.0% | |
| !! | TCGCAGATGACGGAAAATAG+CGG | + | chr4_3:47217857-47217876 | None:intergenic | 45.0% |
| ! | CTATTTTCCGTCATCTGCGA+CGG | - | chr4_3:47217857-47217876 | Msa0643820:intron | 45.0% |
| ATATTGTCCGTCGCAGATGA+CGG | + | chr4_3:47217867-47217886 | None:intergenic | 45.0% | |
| ATCTGCGACGGACAATATTG+TGG | - | chr4_3:47217869-47217888 | Msa0643820:intron | 45.0% | |
| AAGGGCTTTGCGGAATATTG+TGG | + | chr4_3:47217926-47217945 | None:intergenic | 45.0% | |
| AAGTAATAGAGGACTTCGGG+AGG | + | chr4_3:47217950-47217969 | None:intergenic | 45.0% | |
| GGAGCAAGTGGAAGTAATAG+AGG | + | chr4_3:47217961-47217980 | None:intergenic | 45.0% | |
| ! | GAAGTGTTTGTCTCAAGGAG+GGG | + | chr4_3:47218004-47218023 | None:intergenic | 45.0% |
| !! | GGAAGTGTTTGTCTCAAGGA+GGG | + | chr4_3:47218005-47218024 | None:intergenic | 45.0% |
| GACAAACACTTCCCTAAGCT+TGG | - | chr4_3:47218012-47218031 | Msa0643820:intron | 45.0% | |
| ATGGTTTAGGCCACAACATG+TGG | - | chr4_3:47218105-47218124 | Msa0643820:intron | 45.0% | |
| TGCACAAGTCGTCTGATAAG+AGG | + | chr4_3:47218327-47218346 | None:intergenic | 45.0% | |
| GGTCCAACATTACGCCTTAA+TGG | + | chr4_3:47218659-47218678 | None:intergenic | 45.0% | |
| ATCGCCGCGAGAAAACTTGT+TGG | + | chr4_3:47216539-47216558 | None:intergenic | 50.0% | |
| !! | GGGCAAGAAGTACTTGCCTT+TGG | - | chr4_3:47217290-47217309 | Msa0643820:intron | 50.0% |
| TTCTTGGGACGGAGATCCAA+AGG | + | chr4_3:47217309-47217328 | None:intergenic | 50.0% | |
| AAGACGCCTCACTAAGCATC+AGG | - | chr4_3:47217344-47217363 | Msa0643820:intron | 50.0% | |
| AGTGTTGTCAGCCGCTATTG+CGG | - | chr4_3:47217796-47217815 | Msa0643820:intron | 50.0% | |
| ACGCTATAGCACCGCAATAG+CGG | + | chr4_3:47217810-47217829 | None:intergenic | 50.0% | |
| TAGAGGACTTCGGGAGGAAA+GGG | + | chr4_3:47217944-47217963 | None:intergenic | 50.0% | |
| ATAGAGGACTTCGGGAGGAA+AGG | + | chr4_3:47217945-47217964 | None:intergenic | 50.0% | |
| TGTTTGTCTCAAGGAGGGGA+GGG | + | chr4_3:47218000-47218019 | None:intergenic | 50.0% | |
| !! | GGGAAGTGTTTGTCTCAAGG+AGG | + | chr4_3:47218006-47218025 | None:intergenic | 50.0% |
| ACTTCCCTAAGCTTGGAACG+TGG | - | chr4_3:47218019-47218038 | Msa0643820:intron | 50.0% | |
| TCTGCCACGTTCCAAGCTTA+GGG | + | chr4_3:47218026-47218045 | None:intergenic | 50.0% | |
| ATCTGCCACGTTCCAAGCTT+AGG | + | chr4_3:47218027-47218046 | None:intergenic | 50.0% | |
| TTATGGGGACTGGGGGAAAT+TGG | - | chr4_3:47218228-47218247 | Msa0643820:CDS | 50.0% | |
| GACAGAGCGTGAGAAGAAGA+AGG | - | chr4_3:47218606-47218625 | Msa0643820:intron | 50.0% | |
| CTTCGCGTTGCGAAAGTCAC+CGG | - | chr4_3:47216770-47216789 | Msa0643820:three_prime_UTR | 55.0% | |
| !! | GCTATTGCGGTGCTATAGCG+TGG | - | chr4_3:47217809-47217828 | Msa0643820:intron | 55.0% |
| TTCGGGAGGAAAGGGCTTTG+CGG | + | chr4_3:47217936-47217955 | None:intergenic | 55.0% | |
| GGAAAGGAGGAAGGAGCAAG+TGG | + | chr4_3:47217973-47217992 | None:intergenic | 55.0% | |
| GTGTTTGTCTCAAGGAGGGG+AGG | + | chr4_3:47218001-47218020 | None:intergenic | 55.0% | |
| !! | AAGCTTGTTTGGGGCACCGC+CGG | + | chr4_3:47216792-47216811 | None:intergenic | 60.0% |
| GAGGGCAGTGGAAAGGAGGA+AGG | + | chr4_3:47217982-47218001 | None:intergenic | 60.0% | |
| CGCGTTGCGAAAGTCACCGG+CGG | - | chr4_3:47216773-47216792 | Msa0643820:three_prime_UTR | 65.0% | |
| AGGGGAGGGCAGTGGAAAGG+AGG | + | chr4_3:47217986-47218005 | None:intergenic | 65.0% | |
| AGGAGGGGAGGGCAGTGGAA+AGG | + | chr4_3:47217989-47218008 | None:intergenic | 65.0% | |
| TCTCAAGGAGGGGAGGGCAG+TGG | + | chr4_3:47217994-47218013 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 47216518 | 47218995 | 47216518 | ID=Msa0643820;Name=Msa0643820 |
| chr4_3 | mRNA | 47216518 | 47218995 | 47216518 | ID=Msa0643820-mRNA-1;Parent=Msa0643820;Name=Msa0643820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=55|1|1|1|1|1|4|326|122 |
| chr4_3 | exon | 47216518 | 47216918 | 47216518 | ID=Msa0643820-mRNA-1:exon:11173;Parent=Msa0643820-mRNA-1 |
| chr4_3 | exon | 47218148 | 47218304 | 47218148 | ID=Msa0643820-mRNA-1:exon:11172;Parent=Msa0643820-mRNA-1 |
| chr4_3 | exon | 47218694 | 47218826 | 47218694 | ID=Msa0643820-mRNA-1:exon:11171;Parent=Msa0643820-mRNA-1 |
| chr4_3 | exon | 47218937 | 47218995 | 47218937 | ID=Msa0643820-mRNA-1:exon:11170;Parent=Msa0643820-mRNA-1 |
| chr4_3 | five_prime_UTR | 47218941 | 47218995 | 47218941 | ID=Msa0643820-mRNA-1:five_prime_utr;Parent=Msa0643820-mRNA-1 |
| chr4_3 | CDS | 47218937 | 47218940 | 47218937 | ID=Msa0643820-mRNA-1:cds;Parent=Msa0643820-mRNA-1 |
| chr4_3 | CDS | 47218694 | 47218826 | 47218694 | ID=Msa0643820-mRNA-1:cds;Parent=Msa0643820-mRNA-1 |
| chr4_3 | CDS | 47218148 | 47218304 | 47218148 | ID=Msa0643820-mRNA-1:cds;Parent=Msa0643820-mRNA-1 |
| chr4_3 | CDS | 47216844 | 47216918 | 47216844 | ID=Msa0643820-mRNA-1:cds;Parent=Msa0643820-mRNA-1 |
| chr4_3 | three_prime_UTR | 47216518 | 47216843 | 47216518 | ID=Msa0643820-mRNA-1:three_prime_utr;Parent=Msa0643820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
