AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1054280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054280 MtrunA17_Chr7g0224411 99.231 260 2 0 1 260 1 260 0.0 521
Msa1054280 MtrunA17_Chr4g0037721 93.077 260 17 1 1 260 1 259 3.05e-178 490
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054280 AT3G62870.1 82.308 260 42 1 1 260 1 256 3.63e-160 445
Msa1054280 AT2G47610.1 86.008 243 34 0 18 260 15 257 7.50e-159 441

Find 89 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCAATGAGTCTTTCTT+TGG 0.198830 7_2:-25759611 None:intergenic
GAACTACCTTGATGGCTTCT+AGG 0.250413 7_2:-25759407 None:intergenic
GAAGTGGGGTGGTGGTATTA+TGG 0.264609 7_2:+25759561 Msa1054280:CDS
GAGAAGAGGCCAAAGCAATT+TGG 0.270772 7_2:+25757290 Msa1054280:CDS
GTTTGTGAGGTGAACTTAAA+AGG 0.276354 7_2:-25757012 None:intergenic
AGACCGTATTTCACATTAAT+AGG 0.281467 7_2:-25758967 None:intergenic
AACCTTGTCAAATCTCTCTT+TGG 0.311553 7_2:-25757332 None:intergenic
CTCTGAATCTGAACCGTCTT+AGG 0.320689 7_2:-25757365 None:intergenic
CGTCAAGAATGAAGACAAAA+TGG 0.320782 7_2:+25759371 Msa1054280:CDS
AGAAGAGGCCAAAGCAATTT+GGG 0.324521 7_2:+25757291 Msa1054280:CDS
AAGTGGGGTGGTGGTATTAT+GGG 0.327204 7_2:+25759562 Msa1054280:CDS
TGTCAAGGGCAAAGCACGTT+TGG 0.330406 7_2:+25759219 Msa1054280:CDS
AAAAGTGGGTTCACCACTTT+CGG 0.336745 7_2:-25757266 None:intergenic
CATTCTTTGAGCAGCTTCCT+TGG 0.361728 7_2:-25759629 None:intergenic
CCAAAGCAAATGGAATTTCT+AGG 0.364165 7_2:-25759653 None:intergenic
TCAAGTTTGAACTACCTTGA+TGG 0.365851 7_2:-25759415 None:intergenic
TTCTTCTTCGCTGCTGCAAC+TGG 0.368855 7_2:-25757236 None:intergenic
CCTAGAAATTCCATTTGCTT+TGG 0.376226 7_2:+25759653 Msa1054280:exon
AGCTTGTAATTCACAATCAA+TGG 0.379531 7_2:+25759766 Msa1054280:three_prime_UTR
AGCCAGACAACAAGCTCAAT+AGG 0.401792 7_2:-25759157 None:intergenic
TATCGAGTGTCTTAGTGAAC+TGG 0.404157 7_2:-25757436 None:intergenic
GTCAAGGGCAAAGCACGTTT+GGG 0.409984 7_2:+25759220 Msa1054280:CDS
TTTGCCCTCAGATTCGGCTT+GGG 0.411077 7_2:-25758926 None:intergenic
ACGACAAATTTGAGGAAAAC+AGG 0.415015 7_2:+25759536 Msa1054280:CDS
TCCAGCTTTGTGCAGAAAGA+TGG 0.419185 7_2:+25759180 Msa1054280:CDS
ACCCTATTGAGCTTGTTGTC+TGG 0.422913 7_2:+25759155 Msa1054280:CDS
ATTTGACAAGGTTTGTGAAA+TGG 0.429794 7_2:+25757342 Msa1054280:CDS
TTTGTGAGGTGAACTTAAAA+GGG 0.434212 7_2:-25757011 None:intergenic
AGAAGGAACGTCTCCTGAAA+AGG 0.442454 7_2:+25758902 Msa1054280:CDS
CCACCGATCCCAAATTGCTT+TGG 0.444497 7_2:-25757299 None:intergenic
CAGTACCTGCTCAATAAGAT+AGG 0.450266 7_2:-25759001 None:intergenic
TTGATGAAAGAGGCGGAAGA+AGG 0.450631 7_2:-25757065 None:intergenic
TCCATCTTTCTGCACAAAGC+TGG 0.451418 7_2:-25759181 None:intergenic
TAAAAGGGTTATGAAATTGT+GGG 0.453476 7_2:-25756996 None:intergenic
TAACTTTAACGACAAATTTG+AGG 0.461068 7_2:+25759528 Msa1054280:CDS
TATACTAAGTCAGCAAATGA+AGG 0.469820 7_2:-25759935 None:intergenic
AAGCCTATTAATGTGAAATA+CGG 0.473152 7_2:+25758964 Msa1054280:CDS
TGTCCTCAGGTCTGTACTTG+AGG 0.476943 7_2:-25758870 None:intergenic
AACAGGAAGAAGTGGGGTGG+TGG 0.477152 7_2:+25759553 Msa1054280:CDS
TTAAAAGGGTTATGAAATTG+TGG 0.477155 7_2:-25756997 None:intergenic
GAACCTTCAACCTCTGCTTA+AGG 0.478965 7_2:-25757400 None:intergenic
ACTTGAGGAGCATCTTGAAA+AGG 0.488088 7_2:-25758855 None:intergenic
GCCAGACAACAAGCTCAATA+GGG 0.492274 7_2:-25759156 None:intergenic
CTTGTCAAATCTCTCTTTGG+TGG 0.494306 7_2:-25757329 None:intergenic
CAGAATCCTAGAAGCCATCA+AGG 0.506009 7_2:+25759401 Msa1054280:CDS
GATCCTTAAGCAGAGGTTGA+AGG 0.507984 7_2:+25757397 Msa1054280:CDS
TGAGGAAAACAGGAAGAAGT+GGG 0.515672 7_2:+25759546 Msa1054280:CDS
GAAGGAACGTCTCCTGAAAA+GGG 0.516781 7_2:+25758903 Msa1054280:CDS
CGTTACCTATCTTATTGAGC+AGG 0.521902 7_2:+25758996 Msa1054280:CDS
GAAGAATACAGCACCGAAAG+TGG 0.526672 7_2:+25757253 Msa1054280:CDS
AATAGGCTTCTTTGTCTCGA+CGG 0.529456 7_2:-25758950 None:intergenic
TGAGGACAAAGCTGAAAAGA+AGG 0.536121 7_2:+25758885 Msa1054280:CDS
TTCAGATTCAGAGGAAGAAG+AGG 0.541607 7_2:+25757375 Msa1054280:CDS
TTACAAGCTAACAGAATGAA+AGG 0.542137 7_2:-25759752 None:intergenic
GACGGTTGTCAAGCACAAAA+CGG 0.544344 7_2:-25759352 None:intergenic
CACCAAAGAGAGATTTGACA+AGG 0.544974 7_2:+25757330 Msa1054280:CDS
TTGATGTTGTTTGATGAAAG+AGG 0.546296 7_2:-25757075 None:intergenic
TTGAGGAAAACAGGAAGAAG+TGG 0.552443 7_2:+25759545 Msa1054280:CDS
TTTGCCCTTGACAATGCAGT+AGG 0.558136 7_2:-25759209 None:intergenic
AATTCCCTACTGCATTGTCA+AGG 0.570742 7_2:+25759204 Msa1054280:CDS
AAGGGCCCAAGCCGAATCTG+AGG 0.570757 7_2:+25758921 Msa1054280:CDS
TTAGTGAACTGGTTAAGAGC+AGG 0.576262 7_2:-25757425 None:intergenic
AAATAAATCAGCAAAAGTGC+AGG 0.578724 7_2:-25759797 None:intergenic
GCTCAATAGGGTCGACATCG+TGG 0.579407 7_2:-25759144 None:intergenic
TTCACCTCACAAACACCACT+AGG 0.581666 7_2:+25757021 Msa1054280:five_prime_UTR
GTTTGTGAAATGGCCTAAGA+CGG 0.581897 7_2:+25757352 Msa1054280:CDS
CTCAATAGGGTCGACATCGT+GGG 0.587513 7_2:-25759143 None:intergenic
TTGCCCTTGACAATGCAGTA+GGG 0.602893 7_2:-25759208 None:intergenic
CCAAAGCAATTTGGGATCGG+TGG 0.603444 7_2:+25757299 Msa1054280:CDS
AGGCCAAAGCAATTTGGGAT+CGG 0.609688 7_2:+25757296 Msa1054280:CDS
ATTCCCTACTGCATTGTCAA+GGG 0.614650 7_2:+25759205 Msa1054280:CDS
TCACCTCACAAACACCACTA+GGG 0.622915 7_2:+25757022 Msa1054280:five_prime_UTR
CTAAGACGGTTCAGATTCAG+AGG 0.624798 7_2:+25757366 Msa1054280:CDS
CAAAGAAAGACTCATTGCCA+AGG 0.625721 7_2:+25759612 Msa1054280:CDS
GAAGAAGGAGAAATGTGCAA+TGG 0.626196 7_2:-25757050 None:intergenic
GTGAACTGGTTAAGAGCAGG+TGG 0.627497 7_2:-25757422 None:intergenic
TCAAACAACATCAACAACAA+TGG 0.632516 7_2:+25757084 Msa1054280:exon
AGGGCCCAAGCCGAATCTGA+GGG 0.638813 7_2:+25758922 Msa1054280:CDS
AGAAGAGGATCCTTAAGCAG+AGG 0.647604 7_2:+25757390 Msa1054280:CDS
TATTTACAGGCACCAAAGCG+CGG 0.650226 7_2:+25757203 Msa1054280:intron
GAAAACAGGAAGAAGTGGGG+TGG 0.655947 7_2:+25759550 Msa1054280:CDS
TTACAGGCACCAAAGCGCGG+TGG 0.663704 7_2:+25757206 Msa1054280:intron
GAGGAAAACAGGAAGAAGTG+GGG 0.665767 7_2:+25759547 Msa1054280:CDS
AAACCCTAGTGGTGTTTGTG+AGG 0.666182 7_2:-25757025 None:intergenic
CAAATCTCAAGCGAAAACAA+AGG 0.673595 7_2:+25759588 Msa1054280:CDS
GCTCCTCAAGTACAGACCTG+AGG 0.716951 7_2:+25758867 Msa1054280:CDS
GCTCAATAAGATAGGTAACG+TGG 0.726131 7_2:-25758993 None:intergenic
ATGTTGTTTGATGAAAGAGG+CGG 0.782823 7_2:-25757072 None:intergenic
GTGCAATGGAGAAACCCTAG+TGG 0.799404 7_2:-25757036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTCATTTTTTTATTATAAAA+TGG + chr7_2:25757486-25757505 Msa1054280:intron 10.0%
!!! TATTTGATTTGATTATAAAA+TGG + chr7_2:25757719-25757738 Msa1054280:intron 10.0%
!!! TTTATGTGTAATGTTTTAAT+GGG + chr7_2:25757543-25757562 Msa1054280:intron 15.0%
!! TATCAAAATTTGTGTTTAAT+TGG + chr7_2:25757570-25757589 Msa1054280:intron 15.0%
!!! TTTTAGATTTGGTTTTATTT+TGG + chr7_2:25757751-25757770 Msa1054280:intron 15.0%
!!! TTTTTATGTTGTTGATTAAT+TGG + chr7_2:25757841-25757860 Msa1054280:intron 15.0%
!!! GGTTATTATTGTTTAAAATA+AGG + chr7_2:25758053-25758072 Msa1054280:intron 15.0%
!! ATTGTTGAAATCATTATTAT+TGG + chr7_2:25758766-25758785 Msa1054280:intron 15.0%
!! CGATTATCTTTATTATTTAC+AGG + chr7_2:25757190-25757209 Msa1054280:intron 20.0%
!!! TTTTAGATTTGGTTTTGATT+TGG + chr7_2:25757518-25757537 Msa1054280:intron 20.0%
!!! GTTTATGTGTAATGTTTTAA+TGG + chr7_2:25757542-25757561 Msa1054280:intron 20.0%
!!! TTGATTAATTGGTTTTAGTT+TGG + chr7_2:25757852-25757871 Msa1054280:intron 20.0%
!!! ATTGATTTGAATTTGATGAA+AGG + chr7_2:25758216-25758235 Msa1054280:intron 20.0%
!!! TTGATTTGAATTTGATGAAA+GGG + chr7_2:25758217-25758236 Msa1054280:intron 20.0%
!!! GTTTAGTGTTGTTAAAATTT+AGG + chr7_2:25758287-25758306 Msa1054280:intron 20.0%
!!! TGTTGTTGTTTTATAAGATA+AGG + chr7_2:25758414-25758433 Msa1054280:intron 20.0%
!!! TGTATATTTTATCTATTGCT+TGG + chr7_2:25758494-25758513 Msa1054280:intron 20.0%
!!! GATGTTAGTTTAAATTGTTT+TGG + chr7_2:25758560-25758579 Msa1054280:intron 20.0%
!!! GGTTAATTTTATTGAACTAT+CGG - chr7_2:25759473-25759492 None:intergenic 20.0%
!!! TTTTTTACCTTCTATTTTTC+AGG + chr7_2:25759504-25759523 Msa1054280:intron 20.0%
!!! TTGTTATTGTCCTATATTTT+TGG + chr7_2:25759696-25759715 Msa1054280:three_prime_UTR 20.0%
!!! AGTTGTTTTAGACTTAAAAA+TGG + chr7_2:25759824-25759843 Msa1054280:three_prime_UTR 20.0%
! TAAAAGGGTTATGAAATTGT+GGG - chr7_2:25756999-25757018 None:intergenic 25.0%
! TTAAAAGGGTTATGAAATTG+TGG - chr7_2:25757000-25757019 None:intergenic 25.0%
!! GGTGATTATGATTTTAGATT+TGG + chr7_2:25757507-25757526 Msa1054280:intron 25.0%
!!! ATTTTAGTTTAGCGTTTTTG+TGG + chr7_2:25757630-25757649 Msa1054280:intron 25.0%
! TTTATGTCTAATGCTGTAAT+GGG + chr7_2:25757776-25757795 Msa1054280:intron 25.0%
!!! TTGTGAAATGTTTTGATGTT+TGG + chr7_2:25757880-25757899 Msa1054280:intron 25.0%
! TATACACATAAATATGCTGT+AGG - chr7_2:25757953-25757972 None:intergenic 25.0%
!!! TTGTGAAATGTTTTGATGTT+TGG + chr7_2:25757880-25757899 Msa1054280:intron 25.0%
!! GTTGTTGTTGTAGATTAATT+AGG + chr7_2:25758032-25758051 Msa1054280:intron 25.0%
! GATTTAGTGTTAATGTGAAA+TGG + chr7_2:25758265-25758284 Msa1054280:intron 25.0%
!! GAAGTTTAATTTCTTTGTTG+TGG + chr7_2:25758362-25758381 Msa1054280:intron 25.0%
! AAGCCTATTAATGTGAAATA+CGG + chr7_2:25758964-25758983 Msa1054280:CDS 25.0%
! TACTTGTTCATATAACCAAA+AGG - chr7_2:25759029-25759048 None:intergenic 25.0%
! GTCACAAATTATAAATTCAC+AGG - chr7_2:25759284-25759303 None:intergenic 25.0%
! TAACTTTAACGACAAATTTG+AGG + chr7_2:25759528-25759547 Msa1054280:CDS 25.0%
! CTAAAAATAACCAAAGCAAA+TGG - chr7_2:25759666-25759685 None:intergenic 25.0%
!!! TGGTTATTTTTAGAACTTTG+AGG + chr7_2:25759673-25759692 Msa1054280:three_prime_UTR 25.0%
!!! TTATTGTCCTATATTTTTGG+TGG + chr7_2:25759699-25759718 Msa1054280:three_prime_UTR 25.0%
TTTGTGAGGTGAACTTAAAA+GGG - chr7_2:25757014-25757033 None:intergenic 30.0%
! TTGATGTTGTTTGATGAAAG+AGG - chr7_2:25757078-25757097 None:intergenic 30.0%
TCAAACAACATCAACAACAA+TGG + chr7_2:25757084-25757103 Msa1054280:exon 30.0%
ATTTGACAAGGTTTGTGAAA+TGG + chr7_2:25757342-25757361 Msa1054280:CDS 30.0%
AAGACACTCGATAAAAATCT+CGG + chr7_2:25757446-25757465 Msa1054280:CDS 30.0%
!!! TGTGGAATGTTTTGATGTTT+TGG + chr7_2:25757648-25757667 Msa1054280:intron 30.0%
! GGTGATTGTGATTTTAGATT+TGG + chr7_2:25757740-25757759 Msa1054280:intron 30.0%
GTTTATGTCTAATGCTGTAA+TGG + chr7_2:25757775-25757794 Msa1054280:intron 30.0%
GGAAATAGAATGTGATAGAT+TGG + chr7_2:25758515-25758534 Msa1054280:intron 30.0%
AATGTGATAGATTGGTGTAA+TGG + chr7_2:25758523-25758542 Msa1054280:intron 30.0%
ATGTGATAGATTGGTGTAAT+GGG + chr7_2:25758524-25758543 Msa1054280:intron 30.0%
!!! TAAATTGTTTTGGAACATGC+TGG + chr7_2:25758570-25758589 Msa1054280:intron 30.0%
!!! TTGCTGTATTGTTTTGACTA+TGG + chr7_2:25758661-25758680 Msa1054280:intron 30.0%
AGACCGTATTTCACATTAAT+AGG - chr7_2:25758970-25758989 None:intergenic 30.0%
TTCTTACTAACAGTTACTTG+TGG + chr7_2:25759086-25759105 Msa1054280:intron 30.0%
ATTCACAGGTGAAAATTCTA+TGG - chr7_2:25759270-25759289 None:intergenic 30.0%
! CATTTTGTCTTCATTCTTGA+CGG - chr7_2:25759373-25759392 None:intergenic 30.0%
AGGTAAAAAACGAACAGAAA+TGG - chr7_2:25759494-25759513 None:intergenic 30.0%
! AAGTTAGCCTGAAAAATAGA+AGG - chr7_2:25759514-25759533 None:intergenic 30.0%
AAAACCTCCACCAAAAATAT+AGG - chr7_2:25759709-25759728 None:intergenic 30.0%
TTACAAGCTAACAGAATGAA+AGG - chr7_2:25759755-25759774 None:intergenic 30.0%
AGCTTGTAATTCACAATCAA+TGG + chr7_2:25759766-25759785 Msa1054280:three_prime_UTR 30.0%
! AAATAAATCAGCAAAAGTGC+AGG - chr7_2:25759800-25759819 None:intergenic 30.0%
GTTTGTGAGGTGAACTTAAA+AGG - chr7_2:25757015-25757034 None:intergenic 35.0%
! ATGTTGTTTGATGAAAGAGG+CGG - chr7_2:25757075-25757094 None:intergenic 35.0%
AACCTTGTCAAATCTCTCTT+TGG - chr7_2:25757335-25757354 None:intergenic 35.0%
CAAAACATTTCACAACAGCA+GGG - chr7_2:25757976-25757995 None:intergenic 35.0%
TCAAAACATTTCACAACAGC+AGG - chr7_2:25757977-25757996 None:intergenic 35.0%
GAATATCTCGTTTGTGATGT+TGG + chr7_2:25758623-25758642 Msa1054280:intron 35.0%
!!! GTTTTGACTATGGCTATTGA+AGG + chr7_2:25758671-25758690 Msa1054280:intron 35.0%
AGTATCTGTACTCTCATACT+CGG + chr7_2:25759045-25759064 Msa1054280:intron 35.0%
CGTCAAGAATGAAGACAAAA+TGG + chr7_2:25759371-25759390 Msa1054280:CDS 35.0%
TCAAGTTTGAACTACCTTGA+TGG - chr7_2:25759418-25759437 None:intergenic 35.0%
ACGACAAATTTGAGGAAAAC+AGG + chr7_2:25759536-25759555 Msa1054280:CDS 35.0%
!!! CTTTGTTTTCGCTTGAGATT+TGG - chr7_2:25759590-25759609 None:intergenic 35.0%
CAAATCTCAAGCGAAAACAA+AGG + chr7_2:25759588-25759607 Msa1054280:CDS 35.0%
CCAAAGCAAATGGAATTTCT+AGG - chr7_2:25759656-25759675 None:intergenic 35.0%
CCTAGAAATTCCATTTGCTT+TGG + chr7_2:25759653-25759672 Msa1054280:exon 35.0%
!!! TTGTCCTATATTTTTGGTGG+AGG + chr7_2:25759702-25759721 Msa1054280:three_prime_UTR 35.0%
GAAGAAGGAGAAATGTGCAA+TGG - chr7_2:25757053-25757072 None:intergenic 40.0%
AGAGAGAGAGAGAGAGATTA+GGG - chr7_2:25757113-25757132 None:intergenic 40.0%
! AAAAGTGGGTTCACCACTTT+CGG - chr7_2:25757269-25757288 None:intergenic 40.0%
!!! TGAACCCACTTTTTGAGAAG+AGG + chr7_2:25757276-25757295 Msa1054280:CDS 40.0%
TTGGCCTCTTCTCAAAAAGT+GGG - chr7_2:25757283-25757302 None:intergenic 40.0%
TTTGGCCTCTTCTCAAAAAG+TGG - chr7_2:25757284-25757303 None:intergenic 40.0%
AGAAGAGGCCAAAGCAATTT+GGG + chr7_2:25757291-25757310 Msa1054280:CDS 40.0%
CTTGTCAAATCTCTCTTTGG+TGG - chr7_2:25757332-25757351 None:intergenic 40.0%
CACCAAAGAGAGATTTGACA+AGG + chr7_2:25757330-25757349 Msa1054280:CDS 40.0%
GTTTGTGAAATGGCCTAAGA+CGG + chr7_2:25757352-25757371 Msa1054280:CDS 40.0%
TTCAGATTCAGAGGAAGAAG+AGG + chr7_2:25757375-25757394 Msa1054280:CDS 40.0%
TTAGTGAACTGGTTAAGAGC+AGG - chr7_2:25757428-25757447 None:intergenic 40.0%
TATCGAGTGTCTTAGTGAAC+TGG - chr7_2:25757439-25757458 None:intergenic 40.0%
TTGTGTTGAGTGCGTGAAAA+TGG + chr7_2:25758149-25758168 Msa1054280:intron 40.0%
! AATGGTGGTGATAGGTTTAG+CGG + chr7_2:25758167-25758186 Msa1054280:intron 40.0%
GGAGTAGTTTGAGAGATGTT+AGG + chr7_2:25758189-25758208 Msa1054280:intron 40.0%
! TGATAGATTGGTGTAATGGG+AGG + chr7_2:25758527-25758546 Msa1054280:intron 40.0%
TGGCTATTGAAGGTTCTGTA+TGG + chr7_2:25758681-25758700 Msa1054280:intron 40.0%
! TGAAGGTTCTGTATGGACTA+TGG + chr7_2:25758688-25758707 Msa1054280:intron 40.0%
!! ACTTGAGGAGCATCTTGAAA+AGG - chr7_2:25758858-25758877 None:intergenic 40.0%
!! TTCTTTTCAGCTTTGTCCTC+AGG - chr7_2:25758886-25758905 None:intergenic 40.0%
TGAGGACAAAGCTGAAAAGA+AGG + chr7_2:25758885-25758904 Msa1054280:CDS 40.0%
AATAGGCTTCTTTGTCTCGA+CGG - chr7_2:25758953-25758972 None:intergenic 40.0%
GCTCAATAAGATAGGTAACG+TGG - chr7_2:25758996-25759015 None:intergenic 40.0%
CGTTACCTATCTTATTGAGC+AGG + chr7_2:25758996-25759015 Msa1054280:CDS 40.0%
CAGTACCTGCTCAATAAGAT+AGG - chr7_2:25759004-25759023 None:intergenic 40.0%
!!! CTTGTGGCTTTTTCAGAACA+AGG + chr7_2:25759102-25759121 Msa1054280:intron 40.0%
AATTCCCTACTGCATTGTCA+AGG + chr7_2:25759204-25759223 Msa1054280:CDS 40.0%
ATTCCCTACTGCATTGTCAA+GGG + chr7_2:25759205-25759224 Msa1054280:CDS 40.0%
TTGAGGAAAACAGGAAGAAG+TGG + chr7_2:25759545-25759564 Msa1054280:CDS 40.0%
TGAGGAAAACAGGAAGAAGT+GGG + chr7_2:25759546-25759565 Msa1054280:CDS 40.0%
CTTGGCAATGAGTCTTTCTT+TGG - chr7_2:25759614-25759633 None:intergenic 40.0%
CAAAGAAAGACTCATTGCCA+AGG + chr7_2:25759612-25759631 Msa1054280:CDS 40.0%
TTCACCTCACAAACACCACT+AGG + chr7_2:25757021-25757040 Msa1054280:five_prime_UTR 45.0%
TCACCTCACAAACACCACTA+GGG + chr7_2:25757022-25757041 Msa1054280:five_prime_UTR 45.0%
AAACCCTAGTGGTGTTTGTG+AGG - chr7_2:25757028-25757047 None:intergenic 45.0%
TTGATGAAAGAGGCGGAAGA+AGG - chr7_2:25757068-25757087 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGATT+AGG - chr7_2:25757114-25757133 None:intergenic 45.0%
TATTTACAGGCACCAAAGCG+CGG + chr7_2:25757203-25757222 Msa1054280:intron 45.0%
! GAAGAATACAGCACCGAAAG+TGG + chr7_2:25757253-25757272 Msa1054280:CDS 45.0%
GAGAAGAGGCCAAAGCAATT+TGG + chr7_2:25757290-25757309 Msa1054280:CDS 45.0%
! AGGCCAAAGCAATTTGGGAT+CGG + chr7_2:25757296-25757315 Msa1054280:CDS 45.0%
CTCTGAATCTGAACCGTCTT+AGG - chr7_2:25757368-25757387 None:intergenic 45.0%
CTAAGACGGTTCAGATTCAG+AGG + chr7_2:25757366-25757385 Msa1054280:CDS 45.0%
AGAAGAGGATCCTTAAGCAG+AGG + chr7_2:25757390-25757409 Msa1054280:CDS 45.0%
GATCCTTAAGCAGAGGTTGA+AGG + chr7_2:25757397-25757416 Msa1054280:CDS 45.0%
GAACCTTCAACCTCTGCTTA+AGG - chr7_2:25757403-25757422 None:intergenic 45.0%
TGTTGAGTGCGTGAAAATGG+TGG + chr7_2:25758152-25758171 Msa1054280:intron 45.0%
! TGCGTGAAAATGGTGGTGAT+AGG + chr7_2:25758159-25758178 Msa1054280:intron 45.0%
! ATGGTGGTGATAGGTTTAGC+GGG + chr7_2:25758168-25758187 Msa1054280:intron 45.0%
AGAAGGAACGTCTCCTGAAA+AGG + chr7_2:25758902-25758921 Msa1054280:CDS 45.0%
GAAGGAACGTCTCCTGAAAA+GGG + chr7_2:25758903-25758922 Msa1054280:CDS 45.0%
! TTTTCAGAACAAGGCACAGC+TGG + chr7_2:25759111-25759130 Msa1054280:intron 45.0%
!! ACCCTATTGAGCTTGTTGTC+TGG + chr7_2:25759155-25759174 Msa1054280:CDS 45.0%
GCCAGACAACAAGCTCAATA+GGG - chr7_2:25759159-25759178 None:intergenic 45.0%
AGCCAGACAACAAGCTCAAT+AGG - chr7_2:25759160-25759179 None:intergenic 45.0%
! TCCAGCTTTGTGCAGAAAGA+TGG + chr7_2:25759180-25759199 Msa1054280:CDS 45.0%
TCCATCTTTCTGCACAAAGC+TGG - chr7_2:25759184-25759203 None:intergenic 45.0%
TTGCCCTTGACAATGCAGTA+GGG - chr7_2:25759211-25759230 None:intergenic 45.0%
TTTGCCCTTGACAATGCAGT+AGG - chr7_2:25759212-25759231 None:intergenic 45.0%
GACGGTTGTCAAGCACAAAA+CGG - chr7_2:25759355-25759374 None:intergenic 45.0%
CAGAATCCTAGAAGCCATCA+AGG + chr7_2:25759401-25759420 Msa1054280:CDS 45.0%
! GAACTACCTTGATGGCTTCT+AGG - chr7_2:25759410-25759429 None:intergenic 45.0%
GAGGAAAACAGGAAGAAGTG+GGG + chr7_2:25759547-25759566 Msa1054280:CDS 45.0%
! AAGTGGGGTGGTGGTATTAT+GGG + chr7_2:25759562-25759581 Msa1054280:CDS 45.0%
CATTCTTTGAGCAGCTTCCT+TGG - chr7_2:25759632-25759651 None:intergenic 45.0%
GTGCAATGGAGAAACCCTAG+TGG - chr7_2:25757039-25757058 None:intergenic 50.0%
TTCTTCTTCGCTGCTGCAAC+TGG - chr7_2:25757239-25757258 None:intergenic 50.0%
CCACCGATCCCAAATTGCTT+TGG - chr7_2:25757302-25757321 None:intergenic 50.0%
! CCAAAGCAATTTGGGATCGG+TGG + chr7_2:25757299-25757318 Msa1054280:CDS 50.0%
GTGAACTGGTTAAGAGCAGG+TGG - chr7_2:25757425-25757444 None:intergenic 50.0%
TGTCCTCAGGTCTGTACTTG+AGG - chr7_2:25758873-25758892 None:intergenic 50.0%
TTTGCCCTCAGATTCGGCTT+GGG - chr7_2:25758929-25758948 None:intergenic 50.0%
! TTTTGCCCTCAGATTCGGCT+TGG - chr7_2:25758930-25758949 None:intergenic 50.0%
! GACGGTTTTGCCCTCAGATT+CGG - chr7_2:25758935-25758954 None:intergenic 50.0%
!! TGAGCAGGTACTGCACCTTT+TGG + chr7_2:25759011-25759030 Msa1054280:intron 50.0%
CTCAATAGGGTCGACATCGT+GGG - chr7_2:25759146-25759165 None:intergenic 50.0%
TGTCAAGGGCAAAGCACGTT+TGG + chr7_2:25759219-25759238 Msa1054280:CDS 50.0%
GTCAAGGGCAAAGCACGTTT+GGG + chr7_2:25759220-25759239 Msa1054280:CDS 50.0%
GAAAACAGGAAGAAGTGGGG+TGG + chr7_2:25759550-25759569 Msa1054280:CDS 50.0%
! GAAGTGGGGTGGTGGTATTA+TGG + chr7_2:25759561-25759580 Msa1054280:CDS 50.0%
GCTCCTCAAGTACAGACCTG+AGG + chr7_2:25758867-25758886 Msa1054280:CDS 55.0%
!!! ATTCGGCTTGGGCCCTTTTC+AGG - chr7_2:25758918-25758937 None:intergenic 55.0%
GCTCAATAGGGTCGACATCG+TGG - chr7_2:25759147-25759166 None:intergenic 55.0%
AACAGGAAGAAGTGGGGTGG+TGG + chr7_2:25759553-25759572 Msa1054280:CDS 55.0%
TTACAGGCACCAAAGCGCGG+TGG + chr7_2:25757206-25757225 Msa1054280:intron 60.0%
! GGTGCTTTTCCACCGCGCTT+TGG - chr7_2:25757218-25757237 None:intergenic 60.0%
AAGGGCCCAAGCCGAATCTG+AGG + chr7_2:25758921-25758940 Msa1054280:CDS 60.0%
AGGGCCCAAGCCGAATCTGA+GGG + chr7_2:25758922-25758941 Msa1054280:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 25756982 25759947 25756982 ID=Msa1054280;Name=Msa1054280
chr7_2 mRNA 25756982 25759947 25756982 ID=Msa1054280-mRNA-1;Parent=Msa1054280;Name=Msa1054280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=121|1|1|1|1|1|6|290|260
chr7_2 exon 25756982 25757105 25756982 ID=Msa1054280-mRNA-1:exon:5518;Parent=Msa1054280-mRNA-1
chr7_2 exon 25757212 25757467 25757212 ID=Msa1054280-mRNA-1:exon:5519;Parent=Msa1054280-mRNA-1
chr7_2 exon 25758848 25759017 25758848 ID=Msa1054280-mRNA-1:exon:5520;Parent=Msa1054280-mRNA-1
chr7_2 exon 25759118 25759246 25759118 ID=Msa1054280-mRNA-1:exon:5521;Parent=Msa1054280-mRNA-1
chr7_2 exon 25759330 25759422 25759330 ID=Msa1054280-mRNA-1:exon:5522;Parent=Msa1054280-mRNA-1
chr7_2 exon 25759526 25759947 25759526 ID=Msa1054280-mRNA-1:exon:5523;Parent=Msa1054280-mRNA-1
chr7_2 five_prime_UTR 25756982 25757102 25756982 ID=Msa1054280-mRNA-1:five_prime_utr;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25757103 25757105 25757103 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25757212 25757467 25757212 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25758848 25759017 25758848 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25759118 25759246 25759118 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25759330 25759422 25759330 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 CDS 25759526 25759657 25759526 ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1
chr7_2 three_prime_UTR 25759658 25759947 25759658 ID=Msa1054280-mRNA-1:three_prime_utr;Parent=Msa1054280-mRNA-1
Gene Sequence

>Msa1054280

ATGGCACCAAAGCGCGGTGGAAAAGCACCAGTTGCAGCAGCGAAGAAGAATACAGCACCGAAAGTGGTGAACCCACTTTTTGAGAAGAGGCCAAAGCAATTTGGGATCGGTGGTGCTTTGCCACCAAAGAGAGATTTGACAAGGTTTGTGAAATGGCCTAAGACGGTTCAGATTCAGAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCTGCTCTTAACCAGTTCACTAAGACACTCGATAAAAATCTCGCAACAAACCTTTTCAAGATGCTCCTCAAGTACAGACCTGAGGACAAAGCTGAAAAGAAGGAACGTCTCCTGAAAAGGGCCCAAGCCGAATCTGAGGGCAAAACCGTCGAGACAAAGAAGCCTATTAATGTGAAATACGGTCTCAACCACGTTACCTATCTTATTGAGCAGAACAAGGCACAGCTGGTCGTGATTGCCCACGATGTCGACCCTATTGAGCTTGTTGTCTGGCTTCCAGCTTTGTGCAGAAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCACGTTTGGGAACAATTGTTCACAAGAAAACTGCTTCCGTTTTGTGCTTGACAACCGTCAAGAATGAAGACAAAATGGAATTCAGCAGAATCCTAGAAGCCATCAAGGCTAACTTTAACGACAAATTTGAGGAAAACAGGAAGAAGTGGGGTGGTGGTATTATGGGTTCCAAATCTCAAGCGAAAACAAAGGCCAAAGAAAGACTCATTGCCAAGGAAGCTGCTCAAAGAATGACCTAG

Protein sequence

>Msa1054280

MAPKRGGKAPVAAAKKNTAPKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAESEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKFEENRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT*