Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1054280 | XP_013447916.1 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1054280 | sp|P0DKK7|RL7A2_ORYSJ | 88.462 | 260 | 28 | 1 | 1 | 260 | 1 | 258 | 1.88e-169 | 471 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1054280 | A0A072TYM4 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003330 | Msa1054280 | 0.809380 | 1.947242e-50 | -8.615850e-47 |
Msa0016350 | Msa1054280 | 0.830287 | 3.196873e-55 | -8.615850e-47 |
Msa0027590 | Msa1054280 | 0.811783 | 5.890510e-51 | -8.615850e-47 |
Msa0040220 | Msa1054280 | 0.883695 | 3.607572e-71 | -8.615850e-47 |
Msa0070840 | Msa1054280 | 0.808973 | 2.380100e-50 | -8.615850e-47 |
Msa0072570 | Msa1054280 | 0.863398 | 2.561385e-64 | -8.615850e-47 |
Msa0087910 | Msa1054280 | 0.864418 | 1.233377e-64 | -8.615850e-47 |
Msa0113920 | Msa1054280 | 0.807837 | 4.158479e-50 | -8.615850e-47 |
Msa0602900 | Msa1054280 | 0.842230 | 2.935110e-58 | -8.615850e-47 |
Msa0619230 | Msa1054280 | 0.853368 | 2.503161e-61 | -8.615850e-47 |
Msa0643820 | Msa1054280 | 0.832638 | 8.431358e-56 | -8.615850e-47 |
Msa0643960 | Msa1054280 | 0.842244 | 2.910421e-58 | -8.615850e-47 |
Msa0652090 | Msa1054280 | 0.826734 | 2.305771e-54 | -8.615850e-47 |
Msa0653060 | Msa1054280 | 0.824262 | 8.880077e-54 | -8.615850e-47 |
Msa0681220 | Msa1054280 | 0.809708 | 1.655321e-50 | -8.615850e-47 |
Msa0694400 | Msa1054280 | 0.828398 | 9.193506e-55 | -8.615850e-47 |
Msa0694650 | Msa1054280 | 0.826739 | 2.299394e-54 | -8.615850e-47 |
Msa0758420 | Msa1054280 | 0.813286 | 2.764846e-51 | -8.615850e-47 |
Msa0788380 | Msa1054280 | 0.836797 | 7.580264e-57 | -8.615850e-47 |
Msa0790450 | Msa1054280 | 0.806161 | 9.410132e-50 | -8.615850e-47 |
Msa0822580 | Msa1054280 | 0.816569 | 5.169027e-52 | -8.615850e-47 |
Msa0134580 | Msa1054280 | 0.843278 | 1.545758e-58 | -8.615850e-47 |
Msa0144810 | Msa1054280 | 0.816548 | 5.226288e-52 | -8.615850e-47 |
Msa0167860 | Msa1054280 | 0.835772 | 1.381362e-56 | -8.615850e-47 |
Msa0191450 | Msa1054280 | 0.833970 | 3.927824e-56 | -8.615850e-47 |
Msa0191550 | Msa1054280 | 0.828347 | 9.454447e-55 | -8.615850e-47 |
Msa0192300 | Msa1054280 | 0.803779 | 2.961832e-49 | -8.615850e-47 |
Msa0194940 | Msa1054280 | 0.803517 | 3.356728e-49 | -8.615850e-47 |
Msa0195030 | Msa1054280 | 0.803722 | 3.043176e-49 | -8.615850e-47 |
Msa0210330 | Msa1054280 | 0.804301 | 2.307140e-49 | -8.615850e-47 |
Msa0223440 | Msa1054280 | 0.809710 | 1.654070e-50 | -8.615850e-47 |
Msa0369410 | Msa1054280 | 0.822969 | 1.781775e-53 | -8.615850e-47 |
Msa0377520 | Msa1054280 | 0.833210 | 6.078075e-56 | -8.615850e-47 |
Msa0382960 | Msa1054280 | 0.802998 | 4.298735e-49 | -8.615850e-47 |
Msa0426090 | Msa1054280 | 0.873156 | 1.828469e-67 | -8.615850e-47 |
Msa0426250 | Msa1054280 | 0.856146 | 3.918095e-62 | -8.615850e-47 |
Msa0472480 | Msa1054280 | 0.872830 | 2.351938e-67 | -8.615850e-47 |
Msa0475810 | Msa1054280 | 0.859089 | 5.262028e-63 | -8.615850e-47 |
Msa0481520 | Msa1054280 | 0.835787 | 1.369237e-56 | -8.615850e-47 |
Msa1040160 | Msa1054280 | 0.867733 | 1.100752e-65 | -8.615850e-47 |
Msa1041680 | Msa1054280 | 0.802788 | 4.751085e-49 | -8.615850e-47 |
Msa1054280 | Msa1058700 | 0.832069 | 1.166460e-55 | -8.615850e-47 |
Msa1054280 | Msa1082170 | 0.855508 | 6.021047e-62 | -8.615850e-47 |
Msa1054280 | Msa1083370 | 0.868819 | 4.918280e-66 | -8.615850e-47 |
Msa1054280 | Msa1116940 | 0.803701 | 3.075030e-49 | -8.615850e-47 |
Msa1054280 | Msa1147670 | 0.811585 | 6.503720e-51 | -8.615850e-47 |
Msa1054280 | Msa1164150 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
Msa1054280 | Msa1166570 | 0.803294 | 3.733415e-49 | -8.615850e-47 |
Msa1054280 | Msa1180000 | 0.854895 | 9.071921e-62 | -8.615850e-47 |
Msa1054280 | Msa1186030 | 0.861777 | 8.081883e-64 | -8.615850e-47 |
Msa1054280 | Msa1235950 | 0.801317 | 9.533172e-49 | -8.615850e-47 |
Msa1054280 | Msa1235980 | 0.809195 | 2.133635e-50 | -8.615850e-47 |
Msa1054280 | Msa1237040 | 0.845345 | 4.302875e-59 | -8.615850e-47 |
Msa1054280 | Msa1240270 | 0.863375 | 2.603147e-64 | -8.615850e-47 |
Msa1054280 | Msa1258540 | 0.851971 | 6.267950e-61 | -8.615850e-47 |
Msa1054280 | Msa1270640 | 0.847437 | 1.157182e-59 | -8.615850e-47 |
Msa1054280 | Msa1270710 | 0.844859 | 5.823469e-59 | -8.615850e-47 |
Msa1054280 | Msa1278130 | 0.824904 | 6.268444e-54 | -8.615850e-47 |
Msa1054280 | Msa1284060 | 0.830652 | 2.602888e-55 | -8.615850e-47 |
Msa1054280 | Msa1317390 | 0.827065 | 1.921554e-54 | -8.615850e-47 |
Msa1054280 | Msa1385480 | 0.806911 | 6.534526e-50 | -8.615850e-47 |
Msa1054280 | Msa1390760 | 0.850501 | 1.630052e-60 | -8.615850e-47 |
Msa1054280 | Msa1397660 | 0.805015 | 1.637149e-49 | -8.615850e-47 |
Msa1054280 | Msa1410570 | 0.810472 | 1.133399e-50 | -8.615850e-47 |
Msa1054280 | Msa1449160 | 0.810341 | 1.209641e-50 | -8.615850e-47 |
Msa1054280 | Msa1450560 | 0.812298 | 4.548534e-51 | -8.615850e-47 |
Msa1054280 | Msa1465700 | 0.809909 | 1.498825e-50 | -8.615850e-47 |
Msa0239420 | Msa1054280 | 0.855923 | 4.553241e-62 | -8.615850e-47 |
Msa0281370 | Msa1054280 | 0.833572 | 4.938988e-56 | -8.615850e-47 |
Msa0301220 | Msa1054280 | 0.810663 | 1.030432e-50 | -8.615850e-47 |
Msa0301250 | Msa1054280 | 0.802035 | 6.791388e-49 | -8.615850e-47 |
Msa0313060 | Msa1054280 | 0.817031 | 4.071131e-52 | -8.615850e-47 |
Msa0315430 | Msa1054280 | 0.835624 | 1.505291e-56 | -8.615850e-47 |
Msa0517480 | Msa1054280 | 0.826517 | 2.597153e-54 | -8.615850e-47 |
Msa0547920 | Msa1054280 | 0.849636 | 2.847556e-60 | -8.615850e-47 |
Msa0573550 | Msa1054280 | 0.838191 | 3.329168e-57 | -8.615850e-47 |
Msa0582070 | Msa1054280 | 0.809214 | 2.113835e-50 | -8.615850e-47 |
Msa0596370 | Msa1054280 | 0.820359 | 7.152712e-53 | -8.615850e-47 |
Msa0597240 | Msa1054280 | 0.849088 | 4.046584e-60 | -8.615850e-47 |
Msa0929680 | Msa1054280 | 0.815111 | 1.093020e-51 | -8.615850e-47 |
Msa0929700 | Msa1054280 | 0.865792 | 4.565674e-65 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1054280 | MtrunA17_Chr7g0224411 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
Msa1054280 | MtrunA17_Chr4g0037721 | 93.077 | 260 | 17 | 1 | 1 | 260 | 1 | 259 | 3.05e-178 | 490 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1054280 | AT3G62870.1 | 82.308 | 260 | 42 | 1 | 1 | 260 | 1 | 256 | 3.63e-160 | 445 |
Msa1054280 | AT2G47610.1 | 86.008 | 243 | 34 | 0 | 18 | 260 | 15 | 257 | 7.50e-159 | 441 |
Find 89 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7_2:-25759611 | None:intergenic |
GAACTACCTTGATGGCTTCT+AGG | 0.250413 | 7_2:-25759407 | None:intergenic |
GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7_2:+25759561 | Msa1054280:CDS |
GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7_2:+25757290 | Msa1054280:CDS |
GTTTGTGAGGTGAACTTAAA+AGG | 0.276354 | 7_2:-25757012 | None:intergenic |
AGACCGTATTTCACATTAAT+AGG | 0.281467 | 7_2:-25758967 | None:intergenic |
AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7_2:-25757332 | None:intergenic |
CTCTGAATCTGAACCGTCTT+AGG | 0.320689 | 7_2:-25757365 | None:intergenic |
CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7_2:+25759371 | Msa1054280:CDS |
AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7_2:+25757291 | Msa1054280:CDS |
AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7_2:+25759562 | Msa1054280:CDS |
TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7_2:+25759219 | Msa1054280:CDS |
AAAAGTGGGTTCACCACTTT+CGG | 0.336745 | 7_2:-25757266 | None:intergenic |
CATTCTTTGAGCAGCTTCCT+TGG | 0.361728 | 7_2:-25759629 | None:intergenic |
CCAAAGCAAATGGAATTTCT+AGG | 0.364165 | 7_2:-25759653 | None:intergenic |
TCAAGTTTGAACTACCTTGA+TGG | 0.365851 | 7_2:-25759415 | None:intergenic |
TTCTTCTTCGCTGCTGCAAC+TGG | 0.368855 | 7_2:-25757236 | None:intergenic |
CCTAGAAATTCCATTTGCTT+TGG | 0.376226 | 7_2:+25759653 | Msa1054280:exon |
AGCTTGTAATTCACAATCAA+TGG | 0.379531 | 7_2:+25759766 | Msa1054280:three_prime_UTR |
AGCCAGACAACAAGCTCAAT+AGG | 0.401792 | 7_2:-25759157 | None:intergenic |
TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7_2:-25757436 | None:intergenic |
GTCAAGGGCAAAGCACGTTT+GGG | 0.409984 | 7_2:+25759220 | Msa1054280:CDS |
TTTGCCCTCAGATTCGGCTT+GGG | 0.411077 | 7_2:-25758926 | None:intergenic |
ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7_2:+25759536 | Msa1054280:CDS |
TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7_2:+25759180 | Msa1054280:CDS |
ACCCTATTGAGCTTGTTGTC+TGG | 0.422913 | 7_2:+25759155 | Msa1054280:CDS |
ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7_2:+25757342 | Msa1054280:CDS |
TTTGTGAGGTGAACTTAAAA+GGG | 0.434212 | 7_2:-25757011 | None:intergenic |
AGAAGGAACGTCTCCTGAAA+AGG | 0.442454 | 7_2:+25758902 | Msa1054280:CDS |
CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7_2:-25757299 | None:intergenic |
CAGTACCTGCTCAATAAGAT+AGG | 0.450266 | 7_2:-25759001 | None:intergenic |
TTGATGAAAGAGGCGGAAGA+AGG | 0.450631 | 7_2:-25757065 | None:intergenic |
TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7_2:-25759181 | None:intergenic |
TAAAAGGGTTATGAAATTGT+GGG | 0.453476 | 7_2:-25756996 | None:intergenic |
TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7_2:+25759528 | Msa1054280:CDS |
TATACTAAGTCAGCAAATGA+AGG | 0.469820 | 7_2:-25759935 | None:intergenic |
AAGCCTATTAATGTGAAATA+CGG | 0.473152 | 7_2:+25758964 | Msa1054280:CDS |
TGTCCTCAGGTCTGTACTTG+AGG | 0.476943 | 7_2:-25758870 | None:intergenic |
AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7_2:+25759553 | Msa1054280:CDS |
TTAAAAGGGTTATGAAATTG+TGG | 0.477155 | 7_2:-25756997 | None:intergenic |
GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7_2:-25757400 | None:intergenic |
ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7_2:-25758855 | None:intergenic |
GCCAGACAACAAGCTCAATA+GGG | 0.492274 | 7_2:-25759156 | None:intergenic |
CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7_2:-25757329 | None:intergenic |
CAGAATCCTAGAAGCCATCA+AGG | 0.506009 | 7_2:+25759401 | Msa1054280:CDS |
GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7_2:+25757397 | Msa1054280:CDS |
TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7_2:+25759546 | Msa1054280:CDS |
GAAGGAACGTCTCCTGAAAA+GGG | 0.516781 | 7_2:+25758903 | Msa1054280:CDS |
CGTTACCTATCTTATTGAGC+AGG | 0.521902 | 7_2:+25758996 | Msa1054280:CDS |
GAAGAATACAGCACCGAAAG+TGG | 0.526672 | 7_2:+25757253 | Msa1054280:CDS |
AATAGGCTTCTTTGTCTCGA+CGG | 0.529456 | 7_2:-25758950 | None:intergenic |
TGAGGACAAAGCTGAAAAGA+AGG | 0.536121 | 7_2:+25758885 | Msa1054280:CDS |
TTCAGATTCAGAGGAAGAAG+AGG | 0.541607 | 7_2:+25757375 | Msa1054280:CDS |
TTACAAGCTAACAGAATGAA+AGG | 0.542137 | 7_2:-25759752 | None:intergenic |
GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7_2:-25759352 | None:intergenic |
CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7_2:+25757330 | Msa1054280:CDS |
TTGATGTTGTTTGATGAAAG+AGG | 0.546296 | 7_2:-25757075 | None:intergenic |
TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7_2:+25759545 | Msa1054280:CDS |
TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7_2:-25759209 | None:intergenic |
AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7_2:+25759204 | Msa1054280:CDS |
AAGGGCCCAAGCCGAATCTG+AGG | 0.570757 | 7_2:+25758921 | Msa1054280:CDS |
TTAGTGAACTGGTTAAGAGC+AGG | 0.576262 | 7_2:-25757425 | None:intergenic |
AAATAAATCAGCAAAAGTGC+AGG | 0.578724 | 7_2:-25759797 | None:intergenic |
GCTCAATAGGGTCGACATCG+TGG | 0.579407 | 7_2:-25759144 | None:intergenic |
TTCACCTCACAAACACCACT+AGG | 0.581666 | 7_2:+25757021 | Msa1054280:five_prime_UTR |
GTTTGTGAAATGGCCTAAGA+CGG | 0.581897 | 7_2:+25757352 | Msa1054280:CDS |
CTCAATAGGGTCGACATCGT+GGG | 0.587513 | 7_2:-25759143 | None:intergenic |
TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7_2:-25759208 | None:intergenic |
CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7_2:+25757299 | Msa1054280:CDS |
AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7_2:+25757296 | Msa1054280:CDS |
ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7_2:+25759205 | Msa1054280:CDS |
TCACCTCACAAACACCACTA+GGG | 0.622915 | 7_2:+25757022 | Msa1054280:five_prime_UTR |
CTAAGACGGTTCAGATTCAG+AGG | 0.624798 | 7_2:+25757366 | Msa1054280:CDS |
CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7_2:+25759612 | Msa1054280:CDS |
GAAGAAGGAGAAATGTGCAA+TGG | 0.626196 | 7_2:-25757050 | None:intergenic |
GTGAACTGGTTAAGAGCAGG+TGG | 0.627497 | 7_2:-25757422 | None:intergenic |
TCAAACAACATCAACAACAA+TGG | 0.632516 | 7_2:+25757084 | Msa1054280:exon |
AGGGCCCAAGCCGAATCTGA+GGG | 0.638813 | 7_2:+25758922 | Msa1054280:CDS |
AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7_2:+25757390 | Msa1054280:CDS |
TATTTACAGGCACCAAAGCG+CGG | 0.650226 | 7_2:+25757203 | Msa1054280:intron |
GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7_2:+25759550 | Msa1054280:CDS |
TTACAGGCACCAAAGCGCGG+TGG | 0.663704 | 7_2:+25757206 | Msa1054280:intron |
GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7_2:+25759547 | Msa1054280:CDS |
AAACCCTAGTGGTGTTTGTG+AGG | 0.666182 | 7_2:-25757025 | None:intergenic |
CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7_2:+25759588 | Msa1054280:CDS |
GCTCCTCAAGTACAGACCTG+AGG | 0.716951 | 7_2:+25758867 | Msa1054280:CDS |
GCTCAATAAGATAGGTAACG+TGG | 0.726131 | 7_2:-25758993 | None:intergenic |
ATGTTGTTTGATGAAAGAGG+CGG | 0.782823 | 7_2:-25757072 | None:intergenic |
GTGCAATGGAGAAACCCTAG+TGG | 0.799404 | 7_2:-25757036 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTCATTTTTTTATTATAAAA+TGG | + | chr7_2:25757486-25757505 | Msa1054280:intron | 10.0% |
!!! | TATTTGATTTGATTATAAAA+TGG | + | chr7_2:25757719-25757738 | Msa1054280:intron | 10.0% |
!!! | TTTATGTGTAATGTTTTAAT+GGG | + | chr7_2:25757543-25757562 | Msa1054280:intron | 15.0% |
!! | TATCAAAATTTGTGTTTAAT+TGG | + | chr7_2:25757570-25757589 | Msa1054280:intron | 15.0% |
!!! | TTTTAGATTTGGTTTTATTT+TGG | + | chr7_2:25757751-25757770 | Msa1054280:intron | 15.0% |
!!! | TTTTTATGTTGTTGATTAAT+TGG | + | chr7_2:25757841-25757860 | Msa1054280:intron | 15.0% |
!!! | GGTTATTATTGTTTAAAATA+AGG | + | chr7_2:25758053-25758072 | Msa1054280:intron | 15.0% |
!! | ATTGTTGAAATCATTATTAT+TGG | + | chr7_2:25758766-25758785 | Msa1054280:intron | 15.0% |
!! | CGATTATCTTTATTATTTAC+AGG | + | chr7_2:25757190-25757209 | Msa1054280:intron | 20.0% |
!!! | TTTTAGATTTGGTTTTGATT+TGG | + | chr7_2:25757518-25757537 | Msa1054280:intron | 20.0% |
!!! | GTTTATGTGTAATGTTTTAA+TGG | + | chr7_2:25757542-25757561 | Msa1054280:intron | 20.0% |
!!! | TTGATTAATTGGTTTTAGTT+TGG | + | chr7_2:25757852-25757871 | Msa1054280:intron | 20.0% |
!!! | ATTGATTTGAATTTGATGAA+AGG | + | chr7_2:25758216-25758235 | Msa1054280:intron | 20.0% |
!!! | TTGATTTGAATTTGATGAAA+GGG | + | chr7_2:25758217-25758236 | Msa1054280:intron | 20.0% |
!!! | GTTTAGTGTTGTTAAAATTT+AGG | + | chr7_2:25758287-25758306 | Msa1054280:intron | 20.0% |
!!! | TGTTGTTGTTTTATAAGATA+AGG | + | chr7_2:25758414-25758433 | Msa1054280:intron | 20.0% |
!!! | TGTATATTTTATCTATTGCT+TGG | + | chr7_2:25758494-25758513 | Msa1054280:intron | 20.0% |
!!! | GATGTTAGTTTAAATTGTTT+TGG | + | chr7_2:25758560-25758579 | Msa1054280:intron | 20.0% |
!!! | GGTTAATTTTATTGAACTAT+CGG | - | chr7_2:25759473-25759492 | None:intergenic | 20.0% |
!!! | TTTTTTACCTTCTATTTTTC+AGG | + | chr7_2:25759504-25759523 | Msa1054280:intron | 20.0% |
!!! | TTGTTATTGTCCTATATTTT+TGG | + | chr7_2:25759696-25759715 | Msa1054280:three_prime_UTR | 20.0% |
!!! | AGTTGTTTTAGACTTAAAAA+TGG | + | chr7_2:25759824-25759843 | Msa1054280:three_prime_UTR | 20.0% |
! | TAAAAGGGTTATGAAATTGT+GGG | - | chr7_2:25756999-25757018 | None:intergenic | 25.0% |
! | TTAAAAGGGTTATGAAATTG+TGG | - | chr7_2:25757000-25757019 | None:intergenic | 25.0% |
!! | GGTGATTATGATTTTAGATT+TGG | + | chr7_2:25757507-25757526 | Msa1054280:intron | 25.0% |
!!! | ATTTTAGTTTAGCGTTTTTG+TGG | + | chr7_2:25757630-25757649 | Msa1054280:intron | 25.0% |
! | TTTATGTCTAATGCTGTAAT+GGG | + | chr7_2:25757776-25757795 | Msa1054280:intron | 25.0% |
!!! | TTGTGAAATGTTTTGATGTT+TGG | + | chr7_2:25757880-25757899 | Msa1054280:intron | 25.0% |
! | TATACACATAAATATGCTGT+AGG | - | chr7_2:25757953-25757972 | None:intergenic | 25.0% |
!!! | TTGTGAAATGTTTTGATGTT+TGG | + | chr7_2:25757880-25757899 | Msa1054280:intron | 25.0% |
!! | GTTGTTGTTGTAGATTAATT+AGG | + | chr7_2:25758032-25758051 | Msa1054280:intron | 25.0% |
! | GATTTAGTGTTAATGTGAAA+TGG | + | chr7_2:25758265-25758284 | Msa1054280:intron | 25.0% |
!! | GAAGTTTAATTTCTTTGTTG+TGG | + | chr7_2:25758362-25758381 | Msa1054280:intron | 25.0% |
! | AAGCCTATTAATGTGAAATA+CGG | + | chr7_2:25758964-25758983 | Msa1054280:CDS | 25.0% |
! | TACTTGTTCATATAACCAAA+AGG | - | chr7_2:25759029-25759048 | None:intergenic | 25.0% |
! | GTCACAAATTATAAATTCAC+AGG | - | chr7_2:25759284-25759303 | None:intergenic | 25.0% |
! | TAACTTTAACGACAAATTTG+AGG | + | chr7_2:25759528-25759547 | Msa1054280:CDS | 25.0% |
! | CTAAAAATAACCAAAGCAAA+TGG | - | chr7_2:25759666-25759685 | None:intergenic | 25.0% |
!!! | TGGTTATTTTTAGAACTTTG+AGG | + | chr7_2:25759673-25759692 | Msa1054280:three_prime_UTR | 25.0% |
!!! | TTATTGTCCTATATTTTTGG+TGG | + | chr7_2:25759699-25759718 | Msa1054280:three_prime_UTR | 25.0% |
TTTGTGAGGTGAACTTAAAA+GGG | - | chr7_2:25757014-25757033 | None:intergenic | 30.0% | |
! | TTGATGTTGTTTGATGAAAG+AGG | - | chr7_2:25757078-25757097 | None:intergenic | 30.0% |
TCAAACAACATCAACAACAA+TGG | + | chr7_2:25757084-25757103 | Msa1054280:exon | 30.0% | |
ATTTGACAAGGTTTGTGAAA+TGG | + | chr7_2:25757342-25757361 | Msa1054280:CDS | 30.0% | |
AAGACACTCGATAAAAATCT+CGG | + | chr7_2:25757446-25757465 | Msa1054280:CDS | 30.0% | |
!!! | TGTGGAATGTTTTGATGTTT+TGG | + | chr7_2:25757648-25757667 | Msa1054280:intron | 30.0% |
! | GGTGATTGTGATTTTAGATT+TGG | + | chr7_2:25757740-25757759 | Msa1054280:intron | 30.0% |
GTTTATGTCTAATGCTGTAA+TGG | + | chr7_2:25757775-25757794 | Msa1054280:intron | 30.0% | |
GGAAATAGAATGTGATAGAT+TGG | + | chr7_2:25758515-25758534 | Msa1054280:intron | 30.0% | |
AATGTGATAGATTGGTGTAA+TGG | + | chr7_2:25758523-25758542 | Msa1054280:intron | 30.0% | |
ATGTGATAGATTGGTGTAAT+GGG | + | chr7_2:25758524-25758543 | Msa1054280:intron | 30.0% | |
!!! | TAAATTGTTTTGGAACATGC+TGG | + | chr7_2:25758570-25758589 | Msa1054280:intron | 30.0% |
!!! | TTGCTGTATTGTTTTGACTA+TGG | + | chr7_2:25758661-25758680 | Msa1054280:intron | 30.0% |
AGACCGTATTTCACATTAAT+AGG | - | chr7_2:25758970-25758989 | None:intergenic | 30.0% | |
TTCTTACTAACAGTTACTTG+TGG | + | chr7_2:25759086-25759105 | Msa1054280:intron | 30.0% | |
ATTCACAGGTGAAAATTCTA+TGG | - | chr7_2:25759270-25759289 | None:intergenic | 30.0% | |
! | CATTTTGTCTTCATTCTTGA+CGG | - | chr7_2:25759373-25759392 | None:intergenic | 30.0% |
AGGTAAAAAACGAACAGAAA+TGG | - | chr7_2:25759494-25759513 | None:intergenic | 30.0% | |
! | AAGTTAGCCTGAAAAATAGA+AGG | - | chr7_2:25759514-25759533 | None:intergenic | 30.0% |
AAAACCTCCACCAAAAATAT+AGG | - | chr7_2:25759709-25759728 | None:intergenic | 30.0% | |
TTACAAGCTAACAGAATGAA+AGG | - | chr7_2:25759755-25759774 | None:intergenic | 30.0% | |
AGCTTGTAATTCACAATCAA+TGG | + | chr7_2:25759766-25759785 | Msa1054280:three_prime_UTR | 30.0% | |
! | AAATAAATCAGCAAAAGTGC+AGG | - | chr7_2:25759800-25759819 | None:intergenic | 30.0% |
GTTTGTGAGGTGAACTTAAA+AGG | - | chr7_2:25757015-25757034 | None:intergenic | 35.0% | |
! | ATGTTGTTTGATGAAAGAGG+CGG | - | chr7_2:25757075-25757094 | None:intergenic | 35.0% |
AACCTTGTCAAATCTCTCTT+TGG | - | chr7_2:25757335-25757354 | None:intergenic | 35.0% | |
CAAAACATTTCACAACAGCA+GGG | - | chr7_2:25757976-25757995 | None:intergenic | 35.0% | |
TCAAAACATTTCACAACAGC+AGG | - | chr7_2:25757977-25757996 | None:intergenic | 35.0% | |
GAATATCTCGTTTGTGATGT+TGG | + | chr7_2:25758623-25758642 | Msa1054280:intron | 35.0% | |
!!! | GTTTTGACTATGGCTATTGA+AGG | + | chr7_2:25758671-25758690 | Msa1054280:intron | 35.0% |
AGTATCTGTACTCTCATACT+CGG | + | chr7_2:25759045-25759064 | Msa1054280:intron | 35.0% | |
CGTCAAGAATGAAGACAAAA+TGG | + | chr7_2:25759371-25759390 | Msa1054280:CDS | 35.0% | |
TCAAGTTTGAACTACCTTGA+TGG | - | chr7_2:25759418-25759437 | None:intergenic | 35.0% | |
ACGACAAATTTGAGGAAAAC+AGG | + | chr7_2:25759536-25759555 | Msa1054280:CDS | 35.0% | |
!!! | CTTTGTTTTCGCTTGAGATT+TGG | - | chr7_2:25759590-25759609 | None:intergenic | 35.0% |
CAAATCTCAAGCGAAAACAA+AGG | + | chr7_2:25759588-25759607 | Msa1054280:CDS | 35.0% | |
CCAAAGCAAATGGAATTTCT+AGG | - | chr7_2:25759656-25759675 | None:intergenic | 35.0% | |
CCTAGAAATTCCATTTGCTT+TGG | + | chr7_2:25759653-25759672 | Msa1054280:exon | 35.0% | |
!!! | TTGTCCTATATTTTTGGTGG+AGG | + | chr7_2:25759702-25759721 | Msa1054280:three_prime_UTR | 35.0% |
GAAGAAGGAGAAATGTGCAA+TGG | - | chr7_2:25757053-25757072 | None:intergenic | 40.0% | |
AGAGAGAGAGAGAGAGATTA+GGG | - | chr7_2:25757113-25757132 | None:intergenic | 40.0% | |
! | AAAAGTGGGTTCACCACTTT+CGG | - | chr7_2:25757269-25757288 | None:intergenic | 40.0% |
!!! | TGAACCCACTTTTTGAGAAG+AGG | + | chr7_2:25757276-25757295 | Msa1054280:CDS | 40.0% |
TTGGCCTCTTCTCAAAAAGT+GGG | - | chr7_2:25757283-25757302 | None:intergenic | 40.0% | |
TTTGGCCTCTTCTCAAAAAG+TGG | - | chr7_2:25757284-25757303 | None:intergenic | 40.0% | |
AGAAGAGGCCAAAGCAATTT+GGG | + | chr7_2:25757291-25757310 | Msa1054280:CDS | 40.0% | |
CTTGTCAAATCTCTCTTTGG+TGG | - | chr7_2:25757332-25757351 | None:intergenic | 40.0% | |
CACCAAAGAGAGATTTGACA+AGG | + | chr7_2:25757330-25757349 | Msa1054280:CDS | 40.0% | |
GTTTGTGAAATGGCCTAAGA+CGG | + | chr7_2:25757352-25757371 | Msa1054280:CDS | 40.0% | |
TTCAGATTCAGAGGAAGAAG+AGG | + | chr7_2:25757375-25757394 | Msa1054280:CDS | 40.0% | |
TTAGTGAACTGGTTAAGAGC+AGG | - | chr7_2:25757428-25757447 | None:intergenic | 40.0% | |
TATCGAGTGTCTTAGTGAAC+TGG | - | chr7_2:25757439-25757458 | None:intergenic | 40.0% | |
TTGTGTTGAGTGCGTGAAAA+TGG | + | chr7_2:25758149-25758168 | Msa1054280:intron | 40.0% | |
! | AATGGTGGTGATAGGTTTAG+CGG | + | chr7_2:25758167-25758186 | Msa1054280:intron | 40.0% |
GGAGTAGTTTGAGAGATGTT+AGG | + | chr7_2:25758189-25758208 | Msa1054280:intron | 40.0% | |
! | TGATAGATTGGTGTAATGGG+AGG | + | chr7_2:25758527-25758546 | Msa1054280:intron | 40.0% |
TGGCTATTGAAGGTTCTGTA+TGG | + | chr7_2:25758681-25758700 | Msa1054280:intron | 40.0% | |
! | TGAAGGTTCTGTATGGACTA+TGG | + | chr7_2:25758688-25758707 | Msa1054280:intron | 40.0% |
!! | ACTTGAGGAGCATCTTGAAA+AGG | - | chr7_2:25758858-25758877 | None:intergenic | 40.0% |
!! | TTCTTTTCAGCTTTGTCCTC+AGG | - | chr7_2:25758886-25758905 | None:intergenic | 40.0% |
TGAGGACAAAGCTGAAAAGA+AGG | + | chr7_2:25758885-25758904 | Msa1054280:CDS | 40.0% | |
AATAGGCTTCTTTGTCTCGA+CGG | - | chr7_2:25758953-25758972 | None:intergenic | 40.0% | |
GCTCAATAAGATAGGTAACG+TGG | - | chr7_2:25758996-25759015 | None:intergenic | 40.0% | |
CGTTACCTATCTTATTGAGC+AGG | + | chr7_2:25758996-25759015 | Msa1054280:CDS | 40.0% | |
CAGTACCTGCTCAATAAGAT+AGG | - | chr7_2:25759004-25759023 | None:intergenic | 40.0% | |
!!! | CTTGTGGCTTTTTCAGAACA+AGG | + | chr7_2:25759102-25759121 | Msa1054280:intron | 40.0% |
AATTCCCTACTGCATTGTCA+AGG | + | chr7_2:25759204-25759223 | Msa1054280:CDS | 40.0% | |
ATTCCCTACTGCATTGTCAA+GGG | + | chr7_2:25759205-25759224 | Msa1054280:CDS | 40.0% | |
TTGAGGAAAACAGGAAGAAG+TGG | + | chr7_2:25759545-25759564 | Msa1054280:CDS | 40.0% | |
TGAGGAAAACAGGAAGAAGT+GGG | + | chr7_2:25759546-25759565 | Msa1054280:CDS | 40.0% | |
CTTGGCAATGAGTCTTTCTT+TGG | - | chr7_2:25759614-25759633 | None:intergenic | 40.0% | |
CAAAGAAAGACTCATTGCCA+AGG | + | chr7_2:25759612-25759631 | Msa1054280:CDS | 40.0% | |
TTCACCTCACAAACACCACT+AGG | + | chr7_2:25757021-25757040 | Msa1054280:five_prime_UTR | 45.0% | |
TCACCTCACAAACACCACTA+GGG | + | chr7_2:25757022-25757041 | Msa1054280:five_prime_UTR | 45.0% | |
AAACCCTAGTGGTGTTTGTG+AGG | - | chr7_2:25757028-25757047 | None:intergenic | 45.0% | |
TTGATGAAAGAGGCGGAAGA+AGG | - | chr7_2:25757068-25757087 | None:intergenic | 45.0% | |
GAGAGAGAGAGAGAGAGATT+AGG | - | chr7_2:25757114-25757133 | None:intergenic | 45.0% | |
TATTTACAGGCACCAAAGCG+CGG | + | chr7_2:25757203-25757222 | Msa1054280:intron | 45.0% | |
! | GAAGAATACAGCACCGAAAG+TGG | + | chr7_2:25757253-25757272 | Msa1054280:CDS | 45.0% |
GAGAAGAGGCCAAAGCAATT+TGG | + | chr7_2:25757290-25757309 | Msa1054280:CDS | 45.0% | |
! | AGGCCAAAGCAATTTGGGAT+CGG | + | chr7_2:25757296-25757315 | Msa1054280:CDS | 45.0% |
CTCTGAATCTGAACCGTCTT+AGG | - | chr7_2:25757368-25757387 | None:intergenic | 45.0% | |
CTAAGACGGTTCAGATTCAG+AGG | + | chr7_2:25757366-25757385 | Msa1054280:CDS | 45.0% | |
AGAAGAGGATCCTTAAGCAG+AGG | + | chr7_2:25757390-25757409 | Msa1054280:CDS | 45.0% | |
GATCCTTAAGCAGAGGTTGA+AGG | + | chr7_2:25757397-25757416 | Msa1054280:CDS | 45.0% | |
GAACCTTCAACCTCTGCTTA+AGG | - | chr7_2:25757403-25757422 | None:intergenic | 45.0% | |
TGTTGAGTGCGTGAAAATGG+TGG | + | chr7_2:25758152-25758171 | Msa1054280:intron | 45.0% | |
! | TGCGTGAAAATGGTGGTGAT+AGG | + | chr7_2:25758159-25758178 | Msa1054280:intron | 45.0% |
! | ATGGTGGTGATAGGTTTAGC+GGG | + | chr7_2:25758168-25758187 | Msa1054280:intron | 45.0% |
AGAAGGAACGTCTCCTGAAA+AGG | + | chr7_2:25758902-25758921 | Msa1054280:CDS | 45.0% | |
GAAGGAACGTCTCCTGAAAA+GGG | + | chr7_2:25758903-25758922 | Msa1054280:CDS | 45.0% | |
! | TTTTCAGAACAAGGCACAGC+TGG | + | chr7_2:25759111-25759130 | Msa1054280:intron | 45.0% |
!! | ACCCTATTGAGCTTGTTGTC+TGG | + | chr7_2:25759155-25759174 | Msa1054280:CDS | 45.0% |
GCCAGACAACAAGCTCAATA+GGG | - | chr7_2:25759159-25759178 | None:intergenic | 45.0% | |
AGCCAGACAACAAGCTCAAT+AGG | - | chr7_2:25759160-25759179 | None:intergenic | 45.0% | |
! | TCCAGCTTTGTGCAGAAAGA+TGG | + | chr7_2:25759180-25759199 | Msa1054280:CDS | 45.0% |
TCCATCTTTCTGCACAAAGC+TGG | - | chr7_2:25759184-25759203 | None:intergenic | 45.0% | |
TTGCCCTTGACAATGCAGTA+GGG | - | chr7_2:25759211-25759230 | None:intergenic | 45.0% | |
TTTGCCCTTGACAATGCAGT+AGG | - | chr7_2:25759212-25759231 | None:intergenic | 45.0% | |
GACGGTTGTCAAGCACAAAA+CGG | - | chr7_2:25759355-25759374 | None:intergenic | 45.0% | |
CAGAATCCTAGAAGCCATCA+AGG | + | chr7_2:25759401-25759420 | Msa1054280:CDS | 45.0% | |
! | GAACTACCTTGATGGCTTCT+AGG | - | chr7_2:25759410-25759429 | None:intergenic | 45.0% |
GAGGAAAACAGGAAGAAGTG+GGG | + | chr7_2:25759547-25759566 | Msa1054280:CDS | 45.0% | |
! | AAGTGGGGTGGTGGTATTAT+GGG | + | chr7_2:25759562-25759581 | Msa1054280:CDS | 45.0% |
CATTCTTTGAGCAGCTTCCT+TGG | - | chr7_2:25759632-25759651 | None:intergenic | 45.0% | |
GTGCAATGGAGAAACCCTAG+TGG | - | chr7_2:25757039-25757058 | None:intergenic | 50.0% | |
TTCTTCTTCGCTGCTGCAAC+TGG | - | chr7_2:25757239-25757258 | None:intergenic | 50.0% | |
CCACCGATCCCAAATTGCTT+TGG | - | chr7_2:25757302-25757321 | None:intergenic | 50.0% | |
! | CCAAAGCAATTTGGGATCGG+TGG | + | chr7_2:25757299-25757318 | Msa1054280:CDS | 50.0% |
GTGAACTGGTTAAGAGCAGG+TGG | - | chr7_2:25757425-25757444 | None:intergenic | 50.0% | |
TGTCCTCAGGTCTGTACTTG+AGG | - | chr7_2:25758873-25758892 | None:intergenic | 50.0% | |
TTTGCCCTCAGATTCGGCTT+GGG | - | chr7_2:25758929-25758948 | None:intergenic | 50.0% | |
! | TTTTGCCCTCAGATTCGGCT+TGG | - | chr7_2:25758930-25758949 | None:intergenic | 50.0% |
! | GACGGTTTTGCCCTCAGATT+CGG | - | chr7_2:25758935-25758954 | None:intergenic | 50.0% |
!! | TGAGCAGGTACTGCACCTTT+TGG | + | chr7_2:25759011-25759030 | Msa1054280:intron | 50.0% |
CTCAATAGGGTCGACATCGT+GGG | - | chr7_2:25759146-25759165 | None:intergenic | 50.0% | |
TGTCAAGGGCAAAGCACGTT+TGG | + | chr7_2:25759219-25759238 | Msa1054280:CDS | 50.0% | |
GTCAAGGGCAAAGCACGTTT+GGG | + | chr7_2:25759220-25759239 | Msa1054280:CDS | 50.0% | |
GAAAACAGGAAGAAGTGGGG+TGG | + | chr7_2:25759550-25759569 | Msa1054280:CDS | 50.0% | |
! | GAAGTGGGGTGGTGGTATTA+TGG | + | chr7_2:25759561-25759580 | Msa1054280:CDS | 50.0% |
GCTCCTCAAGTACAGACCTG+AGG | + | chr7_2:25758867-25758886 | Msa1054280:CDS | 55.0% | |
!!! | ATTCGGCTTGGGCCCTTTTC+AGG | - | chr7_2:25758918-25758937 | None:intergenic | 55.0% |
GCTCAATAGGGTCGACATCG+TGG | - | chr7_2:25759147-25759166 | None:intergenic | 55.0% | |
AACAGGAAGAAGTGGGGTGG+TGG | + | chr7_2:25759553-25759572 | Msa1054280:CDS | 55.0% | |
TTACAGGCACCAAAGCGCGG+TGG | + | chr7_2:25757206-25757225 | Msa1054280:intron | 60.0% | |
! | GGTGCTTTTCCACCGCGCTT+TGG | - | chr7_2:25757218-25757237 | None:intergenic | 60.0% |
AAGGGCCCAAGCCGAATCTG+AGG | + | chr7_2:25758921-25758940 | Msa1054280:CDS | 60.0% | |
AGGGCCCAAGCCGAATCTGA+GGG | + | chr7_2:25758922-25758941 | Msa1054280:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 25756982 | 25759947 | 25756982 | ID=Msa1054280;Name=Msa1054280 |
chr7_2 | mRNA | 25756982 | 25759947 | 25756982 | ID=Msa1054280-mRNA-1;Parent=Msa1054280;Name=Msa1054280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=121|1|1|1|1|1|6|290|260 |
chr7_2 | exon | 25756982 | 25757105 | 25756982 | ID=Msa1054280-mRNA-1:exon:5518;Parent=Msa1054280-mRNA-1 |
chr7_2 | exon | 25757212 | 25757467 | 25757212 | ID=Msa1054280-mRNA-1:exon:5519;Parent=Msa1054280-mRNA-1 |
chr7_2 | exon | 25758848 | 25759017 | 25758848 | ID=Msa1054280-mRNA-1:exon:5520;Parent=Msa1054280-mRNA-1 |
chr7_2 | exon | 25759118 | 25759246 | 25759118 | ID=Msa1054280-mRNA-1:exon:5521;Parent=Msa1054280-mRNA-1 |
chr7_2 | exon | 25759330 | 25759422 | 25759330 | ID=Msa1054280-mRNA-1:exon:5522;Parent=Msa1054280-mRNA-1 |
chr7_2 | exon | 25759526 | 25759947 | 25759526 | ID=Msa1054280-mRNA-1:exon:5523;Parent=Msa1054280-mRNA-1 |
chr7_2 | five_prime_UTR | 25756982 | 25757102 | 25756982 | ID=Msa1054280-mRNA-1:five_prime_utr;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25757103 | 25757105 | 25757103 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25757212 | 25757467 | 25757212 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25758848 | 25759017 | 25758848 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25759118 | 25759246 | 25759118 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25759330 | 25759422 | 25759330 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | CDS | 25759526 | 25759657 | 25759526 | ID=Msa1054280-mRNA-1:cds;Parent=Msa1054280-mRNA-1 |
chr7_2 | three_prime_UTR | 25759658 | 25759947 | 25759658 | ID=Msa1054280-mRNA-1:three_prime_utr;Parent=Msa1054280-mRNA-1 |
Gene Sequence |
Protein sequence |