Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966420 | RHN43583.1 | 75.758 | 165 | 30 | 2 | 98 | 262 | 1 | 155 | 1.87e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966420 | sp|Q764T8|LUPS_GLYGL | 92.308 | 65 | 5 | 0 | 1 | 65 | 1 | 65 | 1.84e-33 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966420 | A0A396GSS1 | 75.758 | 165 | 30 | 2 | 98 | 262 | 1 | 155 | 8.91e-70 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0966420 | 0.802491 | 5.469490e-49 | -8.615850e-47 |
| Msa0017510 | Msa0966420 | 0.808611 | 2.844133e-50 | -8.615850e-47 |
| Msa0029540 | Msa0966420 | -0.820530 | 6.535170e-53 | -8.615850e-47 |
| Msa0029910 | Msa0966420 | 0.811855 | 5.681923e-51 | -8.615850e-47 |
| Msa0032370 | Msa0966420 | 0.834834 | 2.383012e-56 | -8.615850e-47 |
| Msa0036430 | Msa0966420 | 0.814823 | 1.266053e-51 | -8.615850e-47 |
| Msa0044020 | Msa0966420 | 0.807346 | 5.286351e-50 | -8.615850e-47 |
| Msa0053110 | Msa0966420 | 0.807949 | 3.937365e-50 | -8.615850e-47 |
| Msa0072370 | Msa0966420 | 0.808157 | 3.555458e-50 | -8.615850e-47 |
| Msa0105420 | Msa0966420 | 0.817673 | 2.919722e-52 | -8.615850e-47 |
| Msa0110970 | Msa0966420 | 0.836041 | 1.180648e-56 | -8.615850e-47 |
| Msa0114540 | Msa0966420 | -0.817564 | 3.089028e-52 | -8.615850e-47 |
| Msa0118570 | Msa0966420 | 0.815362 | 9.609552e-52 | -8.615850e-47 |
| Msa0120330 | Msa0966420 | 0.805126 | 1.551683e-49 | -8.615850e-47 |
| Msa0611380 | Msa0966420 | 0.816119 | 6.518342e-52 | -8.615850e-47 |
| Msa0628640 | Msa0966420 | 0.803384 | 3.576397e-49 | -8.615850e-47 |
| Msa0631120 | Msa0966420 | 0.824913 | 6.239112e-54 | -8.615850e-47 |
| Msa0644980 | Msa0966420 | 0.801950 | 7.070269e-49 | -8.615850e-47 |
| Msa0650070 | Msa0966420 | 0.834102 | 3.639506e-56 | -8.615850e-47 |
| Msa0669340 | Msa0966420 | 0.846024 | 2.816579e-59 | -8.615850e-47 |
| Msa0682550 | Msa0966420 | 0.804633 | 1.966813e-49 | -8.615850e-47 |
| Msa0684500 | Msa0966420 | 0.865318 | 6.440619e-65 | -8.615850e-47 |
| Msa0692060 | Msa0966420 | 0.820074 | 8.311359e-53 | -8.615850e-47 |
| Msa0706370 | Msa0966420 | 0.806582 | 7.671799e-50 | -8.615850e-47 |
| Msa0716450 | Msa0966420 | 0.821039 | 4.991061e-53 | -8.615850e-47 |
| Msa0717260 | Msa0966420 | 0.805905 | 1.065072e-49 | -8.615850e-47 |
| Msa0741900 | Msa0966420 | 0.801490 | 8.787615e-49 | -8.615850e-47 |
| Msa0747780 | Msa0966420 | 0.803664 | 3.129046e-49 | -8.615850e-47 |
| Msa0754720 | Msa0966420 | -0.831102 | 2.018883e-55 | -8.615850e-47 |
| Msa0756630 | Msa0966420 | -0.815662 | 8.243001e-52 | -8.615850e-47 |
| Msa0758320 | Msa0966420 | 0.814954 | 1.183912e-51 | -8.615850e-47 |
| Msa0812820 | Msa0966420 | 0.822585 | 2.189730e-53 | -8.615850e-47 |
| Msa0822990 | Msa0966420 | 0.801841 | 7.442334e-49 | -8.615850e-47 |
| Msa0824660 | Msa0966420 | 0.814096 | 1.833524e-51 | -8.615850e-47 |
| Msa0829620 | Msa0966420 | 0.806794 | 6.920289e-50 | -8.615850e-47 |
| Msa0837440 | Msa0966420 | 0.804468 | 2.129176e-49 | -8.615850e-47 |
| Msa0837980 | Msa0966420 | 0.813140 | 2.975368e-51 | -8.615850e-47 |
| Msa0124340 | Msa0966420 | 0.823136 | 1.629530e-53 | -8.615850e-47 |
| Msa0130570 | Msa0966420 | 0.820804 | 5.651386e-53 | -8.615850e-47 |
| Msa0138970 | Msa0966420 | -0.818230 | 2.184927e-52 | -8.615850e-47 |
| Msa0141100 | Msa0966420 | 0.825834 | 3.775404e-54 | -8.615850e-47 |
| Msa0148340 | Msa0966420 | 0.811295 | 7.517928e-51 | -8.615850e-47 |
| Msa0153420 | Msa0966420 | 0.807076 | 6.030319e-50 | -8.615850e-47 |
| Msa0157290 | Msa0966420 | 0.809234 | 2.092972e-50 | -8.615850e-47 |
| Msa0172350 | Msa0966420 | 0.819316 | 1.238113e-52 | -8.615850e-47 |
| Msa0173990 | Msa0966420 | 0.811235 | 7.748943e-51 | -8.615850e-47 |
| Msa0191250 | Msa0966420 | 0.808008 | 3.823956e-50 | -8.615850e-47 |
| Msa0197930 | Msa0966420 | 0.805141 | 1.540656e-49 | -8.615850e-47 |
| Msa0199710 | Msa0966420 | 0.810889 | 9.210307e-51 | -8.615850e-47 |
| Msa0205850 | Msa0966420 | 0.812354 | 4.423028e-51 | -8.615850e-47 |
| Msa0219190 | Msa0966420 | 0.806416 | 8.314199e-50 | -8.615850e-47 |
| Msa0227510 | Msa0966420 | 0.801093 | 1.059394e-48 | -8.615850e-47 |
| Msa0371560 | Msa0966420 | 0.810082 | 1.375232e-50 | -8.615850e-47 |
| Msa0374850 | Msa0966420 | 0.824799 | 6.636961e-54 | -8.615850e-47 |
| Msa0375090 | Msa0966420 | 0.822109 | 2.823912e-53 | -8.615850e-47 |
| Msa0419820 | Msa0966420 | 0.831655 | 1.475768e-55 | -8.615850e-47 |
| Msa0436280 | Msa0966420 | -0.809482 | 1.851085e-50 | -8.615850e-47 |
| Msa0461720 | Msa0966420 | 0.800770 | 1.233467e-48 | -8.615850e-47 |
| Msa0461730 | Msa0966420 | 0.818020 | 2.437507e-52 | -8.615850e-47 |
| Msa0470340 | Msa0966420 | 0.822877 | 1.872635e-53 | -8.615850e-47 |
| Msa0481110 | Msa0966420 | 0.804414 | 2.185459e-49 | -8.615850e-47 |
| Msa0267760 | Msa0966420 | 0.811637 | 6.335827e-51 | -8.615850e-47 |
| Msa0282850 | Msa0966420 | 0.803428 | 3.503140e-49 | -8.615850e-47 |
| Msa0283520 | Msa0966420 | 0.803893 | 2.804202e-49 | -8.615850e-47 |
| Msa0287310 | Msa0966420 | 0.800136 | 1.660256e-48 | -8.615850e-47 |
| Msa0299890 | Msa0966420 | 0.808529 | 2.961746e-50 | -8.615850e-47 |
| Msa0306300 | Msa0966420 | 0.800186 | 1.621621e-48 | -8.615850e-47 |
| Msa0316850 | Msa0966420 | 0.855351 | 6.686176e-62 | -8.615850e-47 |
| Msa0320100 | Msa0966420 | 0.804759 | 1.851861e-49 | -8.615850e-47 |
| Msa0323610 | Msa0966420 | 0.813279 | 2.773644e-51 | -8.615850e-47 |
| Msa0332000 | Msa0966420 | 0.802947 | 4.404477e-49 | -8.615850e-47 |
| Msa0334040 | Msa0966420 | 0.818943 | 1.505864e-52 | -8.615850e-47 |
| Msa0484780 | Msa0966420 | 0.821999 | 2.995070e-53 | -8.615850e-47 |
| Msa0503560 | Msa0966420 | 0.810626 | 1.049676e-50 | -8.615850e-47 |
| Msa0526710 | Msa0966420 | 0.810464 | 1.137873e-50 | -8.615850e-47 |
| Msa0531430 | Msa0966420 | 0.811984 | 5.324899e-51 | -8.615850e-47 |
| Msa0534590 | Msa0966420 | 0.864581 | 1.096925e-64 | -8.615850e-47 |
| Msa0548620 | Msa0966420 | 0.845146 | 4.871326e-59 | -8.615850e-47 |
| Msa0548660 | Msa0966420 | 0.810530 | 1.101052e-50 | -8.615850e-47 |
| Msa0590800 | Msa0966420 | 0.853308 | 2.603191e-61 | -8.615850e-47 |
| Msa0853320 | Msa0966420 | 0.836637 | 8.326703e-57 | -8.615850e-47 |
| Msa0862100 | Msa0966420 | 0.805306 | 1.422360e-49 | -8.615850e-47 |
| Msa0867890 | Msa0966420 | 0.800289 | 1.545402e-48 | -8.615850e-47 |
| Msa0872310 | Msa0966420 | 0.812806 | 3.522895e-51 | -8.615850e-47 |
| Msa0880140 | Msa0966420 | 0.810954 | 8.914098e-51 | -8.615850e-47 |
| Msa0933440 | Msa0966420 | 0.805954 | 1.040214e-49 | -8.615850e-47 |
| Msa0936270 | Msa0966420 | 0.800364 | 1.492405e-48 | -8.615850e-47 |
| Msa0941750 | Msa0966420 | 0.801165 | 1.023994e-48 | -8.615850e-47 |
| Msa0966420 | Msa0993530 | 0.803213 | 3.881651e-49 | -8.615850e-47 |
| Msa0966420 | Msa1010110 | 0.804521 | 2.075556e-49 | -8.615850e-47 |
| Msa0966420 | Msa1012810 | 0.827634 | 1.403704e-54 | -8.615850e-47 |
| Msa0966420 | Msa1019020 | 0.806843 | 6.754725e-50 | -8.615850e-47 |
| Msa0966420 | Msa1033560 | 0.829442 | 5.137476e-55 | -8.615850e-47 |
| Msa0966420 | Msa1054240 | 0.806283 | 8.870220e-50 | -8.615850e-47 |
| Msa0966420 | Msa1063950 | 0.804654 | 1.946890e-49 | -8.615850e-47 |
| Msa0966420 | Msa1104000 | 0.804718 | 1.888149e-49 | -8.615850e-47 |
| Msa0966420 | Msa1113850 | 0.803641 | 3.164710e-49 | -8.615850e-47 |
| Msa0966420 | Msa1139810 | 0.811918 | 5.504658e-51 | -8.615850e-47 |
| Msa0966420 | Msa1160400 | 0.810476 | 1.131104e-50 | -8.615850e-47 |
| Msa0966420 | Msa1170280 | 0.805042 | 1.615637e-49 | -8.615850e-47 |
| Msa0966420 | Msa1172450 | 0.808341 | 3.248480e-50 | -8.615850e-47 |
| Msa0966420 | Msa1197590 | 0.816522 | 5.294670e-52 | -8.615850e-47 |
| Msa0966420 | Msa1203000 | 0.805537 | 1.272308e-49 | -8.615850e-47 |
| Msa0966420 | Msa1217860 | 0.810964 | 8.869831e-51 | -8.615850e-47 |
| Msa0966420 | Msa1218480 | 0.800562 | 1.359576e-48 | -8.615850e-47 |
| Msa0966420 | Msa1219260 | 0.812562 | 3.982988e-51 | -8.615850e-47 |
| Msa0966420 | Msa1249920 | 0.806714 | 7.195036e-50 | -8.615850e-47 |
| Msa0966420 | Msa1255280 | 0.818676 | 1.731071e-52 | -8.615850e-47 |
| Msa0966420 | Msa1266960 | 0.809068 | 2.271860e-50 | -8.615850e-47 |
| Msa0966420 | Msa1269580 | -0.810857 | 9.354917e-51 | -8.615850e-47 |
| Msa0966420 | Msa1320740 | 0.802974 | 4.348819e-49 | -8.615850e-47 |
| Msa0966420 | Msa1348360 | 0.800664 | 1.296351e-48 | -8.615850e-47 |
| Msa0966420 | Msa1370090 | 0.805703 | 1.174397e-49 | -8.615850e-47 |
| Msa0966420 | Msa1390310 | 0.818080 | 2.362569e-52 | -8.615850e-47 |
| Msa0966420 | Msa1395870 | 0.808341 | 3.247422e-50 | -8.615850e-47 |
| Msa0966420 | Msa1399560 | 0.803325 | 3.678501e-49 | -8.615850e-47 |
| Msa0966420 | Msa1420060 | 0.804984 | 1.661647e-49 | -8.615850e-47 |
| Msa0966420 | Msa1429360 | -0.807496 | 4.912597e-50 | -8.615850e-47 |
| Msa0966420 | Msa1429420 | 0.800628 | 1.318137e-48 | -8.615850e-47 |
| Msa0966420 | Msa1439960 | 0.812356 | 4.417870e-51 | -8.615850e-47 |
| Msa0966420 | Msa1466460 | 0.801033 | 1.089719e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966420 | MtrunA17_Chr8g0389491 | 75.758 | 165 | 30 | 2 | 98 | 262 | 1 | 155 | 1.72e-73 | 223 |
| Msa0966420 | MtrunA17_Chr6g0488881 | 96.923 | 65 | 2 | 0 | 1 | 65 | 1 | 65 | 6.67e-37 | 137 |
| Msa0966420 | MtrunA17_Chr1g0176351 | 67.742 | 93 | 28 | 1 | 169 | 261 | 2 | 92 | 6.37e-36 | 127 |
| Msa0966420 | MtrunA17_Chr6g0463721 | 84.615 | 65 | 10 | 0 | 1 | 65 | 1 | 65 | 8.87e-32 | 115 |
| Msa0966420 | MtrunA17_Chr2g0328251 | 61.176 | 85 | 28 | 3 | 169 | 250 | 2 | 84 | 9.83e-25 | 103 |
| Msa0966420 | MtrunA17_Chr8g0342301 | 53.488 | 86 | 36 | 2 | 1 | 82 | 1 | 86 | 3.80e-22 | 90.1 |
| Msa0966420 | MtrunA17_Chr8g0342331 | 55.714 | 70 | 29 | 1 | 1 | 68 | 1 | 70 | 1.60e-21 | 85.9 |
| Msa0966420 | MtrunA17_Chr5g0396321 | 60.606 | 66 | 25 | 1 | 1 | 65 | 1 | 66 | 3.22e-19 | 87.0 |
| Msa0966420 | MtrunA17_Chr4g0024031 | 62.353 | 85 | 27 | 3 | 169 | 250 | 2 | 84 | 4.13e-19 | 86.7 |
| Msa0966420 | MtrunA17_Chr6g0486381 | 57.971 | 69 | 25 | 2 | 1 | 65 | 1 | 69 | 4.52e-19 | 79.3 |
| Msa0966420 | MtrunA17_Chr3g0090611 | 45.882 | 85 | 44 | 1 | 1 | 83 | 1 | 85 | 7.23e-19 | 79.0 |
| Msa0966420 | MtrunA17_Chr7g0228111 | 48.780 | 82 | 40 | 1 | 1 | 80 | 1 | 82 | 3.97e-18 | 84.0 |
| Msa0966420 | MtrunA17_Chr4g0020031 | 48.780 | 82 | 40 | 1 | 1 | 80 | 1 | 82 | 5.01e-18 | 83.6 |
| Msa0966420 | MtrunA17_Chr2g0328241 | 56.818 | 88 | 33 | 3 | 170 | 254 | 3 | 88 | 1.28e-17 | 82.4 |
| Msa0966420 | MtrunA17_Chr7g0238831 | 59.701 | 67 | 25 | 1 | 1 | 65 | 1 | 67 | 1.95e-17 | 80.1 |
| Msa0966420 | MtrunA17_Chr8g0342281 | 48.837 | 86 | 40 | 2 | 1 | 82 | 1 | 86 | 8.57e-17 | 75.1 |
| Msa0966420 | MtrunA17_Chr4g0000131 | 47.561 | 82 | 41 | 1 | 1 | 80 | 1 | 82 | 7.32e-16 | 77.0 |
| Msa0966420 | MtrunA17_Chr6g0488821 | 57.971 | 69 | 25 | 2 | 1 | 65 | 1 | 69 | 2.04e-15 | 75.9 |
| Msa0966420 | MtrunA17_Chr8g0356101 | 54.455 | 101 | 44 | 1 | 67 | 167 | 10 | 108 | 6.63e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966420 | AT2G07050.1 | 59.091 | 66 | 26 | 1 | 1 | 65 | 1 | 66 | 2.57e-18 | 84.7 |
| Msa0966420 | AT1G78960.4 | 48.958 | 96 | 44 | 3 | 1 | 91 | 1 | 96 | 3.48e-17 | 81.3 |
| Msa0966420 | AT1G78960.2 | 48.958 | 96 | 44 | 3 | 1 | 91 | 1 | 96 | 3.48e-17 | 81.3 |
| Msa0966420 | AT1G78960.1 | 48.958 | 96 | 44 | 3 | 1 | 91 | 1 | 96 | 3.48e-17 | 81.3 |
| Msa0966420 | AT1G78960.3 | 48.958 | 96 | 44 | 3 | 1 | 91 | 1 | 96 | 3.48e-17 | 81.3 |
| Msa0966420 | AT1G78955.1 | 54.667 | 75 | 31 | 1 | 1 | 72 | 1 | 75 | 5.13e-17 | 80.9 |
| Msa0966420 | AT1G78970.1 | 50.000 | 84 | 39 | 2 | 1 | 81 | 1 | 84 | 3.34e-16 | 78.6 |
| Msa0966420 | AT1G78970.2 | 50.000 | 84 | 39 | 2 | 1 | 81 | 1 | 84 | 3.34e-16 | 78.6 |
| Msa0966420 | AT1G78970.3 | 50.000 | 84 | 39 | 2 | 1 | 81 | 1 | 84 | 3.34e-16 | 78.6 |
| Msa0966420 | AT1G78950.2 | 46.939 | 98 | 45 | 5 | 1 | 92 | 10 | 106 | 6.11e-16 | 77.8 |
| Msa0966420 | AT1G78950.1 | 46.939 | 98 | 45 | 5 | 1 | 92 | 1 | 97 | 6.14e-16 | 77.8 |
| Msa0966420 | AT1G66960.3 | 50.000 | 76 | 35 | 1 | 1 | 73 | 1 | 76 | 6.82e-15 | 74.7 |
| Msa0966420 | AT1G66960.1 | 50.000 | 76 | 35 | 1 | 1 | 73 | 1 | 76 | 6.82e-15 | 74.7 |
| Msa0966420 | AT1G66960.4 | 50.000 | 76 | 35 | 1 | 1 | 73 | 1 | 76 | 6.82e-15 | 74.7 |
| Msa0966420 | AT1G66960.2 | 50.000 | 76 | 35 | 1 | 1 | 73 | 10 | 85 | 6.97e-15 | 74.7 |
| Msa0966420 | AT4G15370.2 | 49.333 | 75 | 35 | 1 | 1 | 72 | 1 | 75 | 1.45e-14 | 73.6 |
| Msa0966420 | AT4G15370.1 | 49.333 | 75 | 35 | 1 | 1 | 72 | 1 | 75 | 1.45e-14 | 73.6 |
| Msa0966420 | AT4G15340.2 | 54.286 | 70 | 29 | 2 | 1 | 67 | 1 | 70 | 1.74e-14 | 73.2 |
| Msa0966420 | AT4G15340.1 | 54.286 | 70 | 29 | 2 | 1 | 67 | 1 | 70 | 2.04e-14 | 73.2 |
| Msa0966420 | AT3G45130.2 | 55.385 | 65 | 27 | 1 | 1 | 65 | 1 | 63 | 3.21e-13 | 69.7 |
| Msa0966420 | AT3G45130.3 | 55.385 | 65 | 27 | 1 | 1 | 65 | 1 | 63 | 3.21e-13 | 69.7 |
| Msa0966420 | AT3G45130.4 | 55.385 | 65 | 27 | 1 | 1 | 65 | 1 | 63 | 3.42e-13 | 69.7 |
| Msa0966420 | AT3G45130.1 | 55.385 | 65 | 27 | 1 | 1 | 65 | 1 | 63 | 3.42e-13 | 69.7 |
| Msa0966420 | AT3G45130.5 | 55.385 | 65 | 27 | 1 | 1 | 65 | 1 | 63 | 3.42e-13 | 69.7 |
| Msa0966420 | AT5G36150.1 | 50.000 | 70 | 32 | 2 | 1 | 67 | 1 | 70 | 4.28e-13 | 69.3 |
| Msa0966420 | AT5G36150.2 | 50.000 | 70 | 32 | 2 | 1 | 67 | 1 | 70 | 4.28e-13 | 69.3 |
| Msa0966420 | AT1G78500.2 | 49.333 | 75 | 35 | 2 | 1 | 72 | 1 | 75 | 5.46e-13 | 68.9 |
| Msa0966420 | AT1G78500.1 | 49.333 | 75 | 35 | 2 | 1 | 72 | 1 | 75 | 5.46e-13 | 68.9 |
| Msa0966420 | AT5G48010.1 | 48.000 | 75 | 36 | 2 | 1 | 72 | 1 | 75 | 7.82e-13 | 68.6 |
| Msa0966420 | AT5G48010.2 | 48.000 | 75 | 36 | 2 | 1 | 72 | 1 | 75 | 8.61e-13 | 68.6 |
| Msa0966420 | AT5G42600.1 | 45.333 | 75 | 38 | 1 | 1 | 72 | 1 | 75 | 3.97e-12 | 66.6 |
Find 59 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATATGTTGAGATAATT+TGG | 0.158226 | 6_3:-94624435 | None:intergenic |
| TAGAACCAATTCCGGTTATT+AGG | 0.172803 | 6_3:+94627793 | Msa0966420:CDS |
| AGGTGTAGTTAATATTATTA+AGG | 0.271212 | 6_3:+94624396 | Msa0966420:five_prime_UTR |
| TCTTGTGGTGTTCCTGCATT+TGG | 0.337805 | 6_3:-94624565 | None:intergenic |
| ATATGCCAATGAATCTGATT+TGG | 0.343250 | 6_3:+94627860 | Msa0966420:CDS |
| TTTCGGTACGTAACAATAGT+AGG | 0.349766 | 6_3:-94627831 | None:intergenic |
| AGACATGCTTTCAGAATTGC+AGG | 0.351995 | 6_3:+94628005 | Msa0966420:CDS |
| GAGGTCAGAACTTTGTTTGA+TGG | 0.356213 | 6_3:-94624638 | None:intergenic |
| CTGAATCGTAGATTTCAAAT+TGG | 0.359013 | 6_3:-94627929 | None:intergenic |
| CAAACCCTAATAACCGGAAT+TGG | 0.366700 | 6_3:-94627798 | None:intergenic |
| AGAACCAATTCCGGTTATTA+GGG | 0.369746 | 6_3:+94627794 | Msa0966420:CDS |
| ATTTCTGTGAATAACTTCAT+AGG | 0.384332 | 6_3:+94624520 | Msa0966420:CDS |
| CTGGTCTAAGAAAGCTTTGA+TGG | 0.413636 | 6_3:-94627679 | None:intergenic |
| GTATTCCAAATCAGATTCAT+TGG | 0.413673 | 6_3:-94627865 | None:intergenic |
| CAGAGGAGTAGAACCAATTC+CGG | 0.437283 | 6_3:+94627785 | Msa0966420:CDS |
| AAGATAGCAGAAGGAGGAGA+AGG | 0.447791 | 6_3:+94624493 | Msa0966420:CDS |
| TTATTACAAACCCTAATAAC+CGG | 0.449449 | 6_3:-94627804 | None:intergenic |
| TAGCTGTCCACGCCACCATC+TGG | 0.455607 | 6_3:-94627698 | None:intergenic |
| ATTGGTTCTACTCCTCTGTT+CGG | 0.462587 | 6_3:-94627780 | None:intergenic |
| TTCTGAAAGCATGTCTCAAA+AGG | 0.471750 | 6_3:-94627998 | None:intergenic |
| AACAAAGATTACTCCTTGAC+CGG | 0.478687 | 6_3:+94627975 | Msa0966420:CDS |
| TCAATCTCAGCATGTTCTTG+TGG | 0.480961 | 6_3:-94624580 | None:intergenic |
| TAATCTTTGTTGTAACAAAA+CGG | 0.481557 | 6_3:-94627963 | None:intergenic |
| AATTCTTGCGCTATTGAAAG+AGG | 0.482749 | 6_3:+94628097 | Msa0966420:CDS |
| TCTCCCATGGCTGATCCGTT+AGG | 0.487367 | 6_3:-94627603 | None:intergenic |
| ACTTCATAGGACGTCAACAC+TGG | 0.494111 | 6_3:+94624533 | Msa0966420:CDS |
| ATGATGAGGGAAGAGTTTGC+CGG | 0.501865 | 6_3:+94627633 | Msa0966420:CDS |
| TAAATATTACACAAAGTTGA+AGG | 0.503711 | 6_3:+94627896 | Msa0966420:CDS |
| GCGTCAGTTGGTATCAGAGC+AGG | 0.512156 | 6_3:+94627564 | Msa0966420:CDS |
| TGATCCGTTAGGAAAAGAAC+AGG | 0.517496 | 6_3:-94627592 | None:intergenic |
| AGATAGCAGAAGGAGGAGAA+GGG | 0.517972 | 6_3:+94624494 | Msa0966420:CDS |
| TAACTCGTGTTCGCGTAAGA+TGG | 0.522546 | 6_3:+94628028 | Msa0966420:CDS |
| GGTAAGAGTCACGGTTATGC+CGG | 0.524145 | 6_3:-94627652 | None:intergenic |
| CAAAGCTTTCTTAGACCAGA+TGG | 0.526610 | 6_3:+94627683 | Msa0966420:CDS |
| AAGAACATGCTGAGATTGAA+AGG | 0.540342 | 6_3:+94624584 | Msa0966420:CDS |
| ATGTCTCAAAAGGCCGGTCA+AGG | 0.544729 | 6_3:-94627988 | None:intergenic |
| TTCGGTACGTAACAATAGTA+GGG | 0.544923 | 6_3:-94627830 | None:intergenic |
| TGACCTCTTGATGAGGATGC+AGG | 0.547443 | 6_3:+94624654 | Msa0966420:CDS |
| CATCATCAATTCATCTCCCA+TGG | 0.558795 | 6_3:-94627616 | None:intergenic |
| GATGGTGGCGTGGACAGCTA+AGG | 0.560948 | 6_3:+94627701 | Msa0966420:CDS |
| GAAAGCATGTCTCAAAAGGC+CGG | 0.562709 | 6_3:-94627994 | None:intergenic |
| TTTCCTAACGGATCAGCCAT+GGG | 0.562791 | 6_3:+94627600 | Msa0966420:CDS |
| TAAGAAAGCTTTGATGGTCG+TGG | 0.563135 | 6_3:-94627673 | None:intergenic |
| TGGAAGTTGAAGATAGCAGA+AGG | 0.564446 | 6_3:+94624484 | Msa0966420:CDS |
| CGCTTCCGTACTGCGTCAGT+TGG | 0.565867 | 6_3:+94627552 | Msa0966420:CDS |
| CTGACGCAGTACGGAAGCGT+AGG | 0.569855 | 6_3:-94627548 | None:intergenic |
| CTTCATAGGACGTCAACACT+GGG | 0.580277 | 6_3:+94624534 | Msa0966420:CDS |
| TGATACCAACTGACGCAGTA+CGG | 0.583464 | 6_3:-94627557 | None:intergenic |
| TGGGAATTTGATCCAAATGC+AGG | 0.583989 | 6_3:+94624553 | Msa0966420:CDS |
| GATGGTCGTGGTAAGAGTCA+CGG | 0.597704 | 6_3:-94627661 | None:intergenic |
| ATACCTGCATCCTCATCAAG+AGG | 0.606748 | 6_3:-94624657 | None:intergenic |
| AAAGTTCTGACCTCTTGATG+AGG | 0.625006 | 6_3:+94624647 | Msa0966420:CDS |
| AAGTTGAAGATAGCAGAAGG+AGG | 0.632969 | 6_3:+94624487 | Msa0966420:CDS |
| GGGAGATGAATTGATGATGA+GGG | 0.635382 | 6_3:+94627620 | Msa0966420:CDS |
| TGGGAGATGAATTGATGATG+AGG | 0.655357 | 6_3:+94627619 | Msa0966420:CDS |
| TGACGCAGTACGGAAGCGTA+GGG | 0.664213 | 6_3:-94627547 | None:intergenic |
| TCTTAGACCAGATGGTGGCG+TGG | 0.668803 | 6_3:+94627691 | Msa0966420:CDS |
| AACGGAAACAATCCGAACAG+AGG | 0.677381 | 6_3:+94627768 | Msa0966420:CDS |
| AGCTTTCTTAGACCAGATGG+TGG | 0.686739 | 6_3:+94627686 | Msa0966420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAACTTTATTTTACT+CGG | - | chr6_3:94625935-94625954 | None:intergenic | 10.0% |
| !!! | AACTATTAGATTTTAAAATA+GGG | - | chr6_3:94626277-94626296 | None:intergenic | 10.0% |
| !!! | AAACTATTAGATTTTAAAAT+AGG | - | chr6_3:94626278-94626297 | None:intergenic | 10.0% |
| !!! | ATTTTAAAATCTAATAGTTT+TGG | + | chr6_3:94626278-94626297 | Msa0966420:intron | 10.0% |
| !! | ACAAAATTATAGATATTTAT+AGG | + | chr6_3:94626727-94626746 | Msa0966420:intron | 10.0% |
| !!! | TATTTCGTTTTATTTTATTT+CGG | + | chr6_3:94627311-94627330 | Msa0966420:intron | 10.0% |
| !! | ATATATATGTTGAGATAATT+TGG | - | chr6_3:94624438-94624457 | None:intergenic | 15.0% |
| !! | ACTTGAAATTATATATCTAT+AGG | - | chr6_3:94624727-94624746 | None:intergenic | 15.0% |
| !!! | AAGAGCAATTTTATTTTTTT+TGG | + | chr6_3:94625479-94625498 | Msa0966420:intron | 15.0% |
| !!! | AAGTGAATAAATTTTTTGTA+GGG | - | chr6_3:94625743-94625762 | None:intergenic | 15.0% |
| !!! | AAAGTGAATAAATTTTTTGT+AGG | - | chr6_3:94625744-94625763 | None:intergenic | 15.0% |
| !!! | TATTATTTGCATTTTTTTAC+CGG | + | chr6_3:94625768-94625787 | Msa0966420:intron | 15.0% |
| !! | ATAAAATGCAAATATAATTC+CGG | - | chr6_3:94625790-94625809 | None:intergenic | 15.0% |
| !!! | TGAAAACTTTTTACAAAAAA+TGG | - | chr6_3:94625840-94625859 | None:intergenic | 15.0% |
| !! | TGTAATTTATCTTAAATTTC+AGG | + | chr6_3:94626044-94626063 | Msa0966420:intron | 15.0% |
| !! | TTTAATGCAACATTAATTAT+TGG | + | chr6_3:94626164-94626183 | Msa0966420:intron | 15.0% |
| !! | ATTAAGTCTATTGAAAAAAA+AGG | - | chr6_3:94626209-94626228 | None:intergenic | 15.0% |
| !!! | ACCATATTTTAATCATTTTA+TGG | + | chr6_3:94626242-94626261 | Msa0966420:intron | 15.0% |
| !! | TCCATAAAATGATTAAAATA+TGG | - | chr6_3:94626246-94626265 | None:intergenic | 15.0% |
| !!! | ACTATTAGATTTTAAAATAG+GGG | - | chr6_3:94626276-94626295 | None:intergenic | 15.0% |
| !!! | ATTAACCATTTAAAATTTGA+CGG | - | chr6_3:94626479-94626498 | None:intergenic | 15.0% |
| !! | TAAATGGTTAATTAAGTAAA+TGG | + | chr6_3:94626487-94626506 | Msa0966420:intron | 15.0% |
| !!! | AATGTTGATAGAAAATTTTA+CGG | + | chr6_3:94626635-94626654 | Msa0966420:intron | 15.0% |
| !!! | GATCACTATATTTTAAAATT+CGG | - | chr6_3:94626771-94626790 | None:intergenic | 15.0% |
| !!! | ACTATAGTTTTACATTTTTT+AGG | - | chr6_3:94626798-94626817 | None:intergenic | 15.0% |
| !!! | TCTAATTGTTTATACTTTTT+TGG | - | chr6_3:94626823-94626842 | None:intergenic | 15.0% |
| !! | AAAGTATAAACAATTAGAAT+AGG | + | chr6_3:94626825-94626844 | Msa0966420:intron | 15.0% |
| !! | TCTATAAAATTACTAAGATT+TGG | - | chr6_3:94627279-94627298 | None:intergenic | 15.0% |
| !! | AGGTGTAGTTAATATTATTA+AGG | + | chr6_3:94624396-94624415 | Msa0966420:five_prime_UTR | 20.0% |
| !!! | TTAGCTTGTTTTTACTTATT+TGG | - | chr6_3:94625260-94625279 | None:intergenic | 20.0% |
| !!! | AGCAATTTTATTTTTTTTGG+TGG | + | chr6_3:94625482-94625501 | Msa0966420:intron | 20.0% |
| !!! | AATTTTATTTTTTTTGGTGG+TGG | + | chr6_3:94625485-94625504 | Msa0966420:intron | 20.0% |
| !! | ATATCTGCAATTAAATGAAT+TGG | - | chr6_3:94626018-94626037 | None:intergenic | 20.0% |
| !!! | TTTCTAAATACTTGTACTTT+TGG | + | chr6_3:94626103-94626122 | Msa0966420:intron | 20.0% |
| !!! | AATAGACTTAATTGCAATTT+TGG | + | chr6_3:94626217-94626236 | Msa0966420:intron | 20.0% |
| !!! | CTATTAGATTTTAAAATAGG+GGG | - | chr6_3:94626275-94626294 | None:intergenic | 20.0% |
| !!! | TAAAACCGTCAAATTTTAAA+TGG | + | chr6_3:94626471-94626490 | Msa0966420:intron | 20.0% |
| !!! | ATGTTGATAGAAAATTTTAC+GGG | + | chr6_3:94626636-94626655 | Msa0966420:intron | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr6_3:94626696-94626715 | Msa0966420:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr6_3:94626697-94626716 | Msa0966420:intron | 20.0% |
| !! | AATTAACCATAAATCACTAA+AGG | - | chr6_3:94627034-94627053 | None:intergenic | 20.0% |
| !! | TTTATTGAAAGGATTAGATT+AGG | + | chr6_3:94627172-94627191 | Msa0966420:intron | 20.0% |
| !! | TAAATATTACACAAAGTTGA+AGG | + | chr6_3:94627896-94627915 | Msa0966420:CDS | 20.0% |
| !!! | TAATCTTTGTTGTAACAAAA+CGG | - | chr6_3:94627966-94627985 | None:intergenic | 20.0% |
| ! | AGAGAATAAAGAAAAAGATG+TGG | + | chr6_3:94624464-94624483 | Msa0966420:exon | 25.0% |
| ! | ATTTCTGTGAATAACTTCAT+AGG | + | chr6_3:94624520-94624539 | Msa0966420:CDS | 25.0% |
| !! | TTTGATGGAGAATCTATTTT+TGG | - | chr6_3:94624626-94624645 | None:intergenic | 25.0% |
| !!! | TCTGGATTTTCTAGTTATTT+AGG | - | chr6_3:94624817-94624836 | None:intergenic | 25.0% |
| ! | ACAATGCATTAATATATGCA+AGG | + | chr6_3:94625046-94625065 | Msa0966420:intron | 25.0% |
| !!! | AAATGCTTCTTTTTTTTTGC+CGG | - | chr6_3:94625087-94625106 | None:intergenic | 25.0% |
| ! | TAATCAAAGTAATTAGCTAG+TGG | + | chr6_3:94625135-94625154 | Msa0966420:intron | 25.0% |
| !!! | TTGTTTCTGTTTTGGATATA+GGG | - | chr6_3:94625614-94625633 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTGTTTTGGATAT+AGG | - | chr6_3:94625615-94625634 | None:intergenic | 25.0% |
| !!! | TGTAAAAAGTTTTCAAGTCA+TGG | + | chr6_3:94625845-94625864 | Msa0966420:intron | 25.0% |
| ! | AATGTGATATATTTACCTGA+TGG | + | chr6_3:94626352-94626371 | Msa0966420:intron | 25.0% |
| !!! | TGTTGATAGAAAATTTTACG+GGG | + | chr6_3:94626637-94626656 | Msa0966420:intron | 25.0% |
| !!! | AACGTCTTGTTTTTATTGAA+AGG | + | chr6_3:94627161-94627180 | Msa0966420:intron | 25.0% |
| !!! | TTTTATTTTATTTCGGTCCA+CGG | + | chr6_3:94627318-94627337 | Msa0966420:intron | 25.0% |
| !!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr6_3:94627509-94627528 | Msa0966420:intron | 25.0% |
| ! | TTATTACAAACCCTAATAAC+CGG | - | chr6_3:94627807-94627826 | None:intergenic | 25.0% |
| !!! | CATTGGCATATTTTGATTTT+CGG | - | chr6_3:94627851-94627870 | None:intergenic | 25.0% |
| AGAAAATCCAGAGTTCAAAA+TGG | + | chr6_3:94624825-94624844 | Msa0966420:intron | 30.0% | |
| GAAAATCCAGAGTTCAAAAT+GGG | + | chr6_3:94624826-94624845 | Msa0966420:intron | 30.0% | |
| CATTAATATATGCAAGGTCT+GGG | + | chr6_3:94625052-94625071 | Msa0966420:intron | 30.0% | |
| ATTAATATATGCAAGGTCTG+GGG | + | chr6_3:94625053-94625072 | Msa0966420:intron | 30.0% | |
| !!! | AATGCTTCTTTTTTTTTGCC+GGG | - | chr6_3:94625086-94625105 | None:intergenic | 30.0% |
| !!! | GCTTGTTTTTACTTATTTGG+TGG | - | chr6_3:94625257-94625276 | None:intergenic | 30.0% |
| AAAATTGCTCTTCTTTCATC+TGG | - | chr6_3:94625471-94625490 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr6_3:94625530-94625549 | None:intergenic | 30.0% | |
| !!! | GTGTTGTTTTGTTTCTGTTT+TGG | - | chr6_3:94625622-94625641 | None:intergenic | 30.0% |
| !! | TGAAGGAGAACACTTTATTT+TGG | - | chr6_3:94625977-94625996 | None:intergenic | 30.0% |
| ! | GTTGATATTTTTCTACCATC+AGG | - | chr6_3:94626370-94626389 | None:intergenic | 30.0% |
| !!! | CTAAAAAGTGTGGTTTTGTA+AGG | - | chr6_3:94626545-94626564 | None:intergenic | 30.0% |
| AGCTAAAGGAAAATGTTTGA+AGG | - | chr6_3:94626569-94626588 | None:intergenic | 30.0% | |
| TTTGGTCTCAAAAAAGCTAA+AGG | - | chr6_3:94626583-94626602 | None:intergenic | 30.0% | |
| ! | AAAATTTCCGTCTGAAACTT+TGG | - | chr6_3:94626601-94626620 | None:intergenic | 30.0% |
| TATGTACTCATCTTAACGTA+CGG | - | chr6_3:94626865-94626884 | None:intergenic | 30.0% | |
| TCGTATCCTTTAGTGATTTA+TGG | + | chr6_3:94627025-94627044 | Msa0966420:intron | 30.0% | |
| ! | AAAAAAGACCTGCATGTTTT+TGG | - | chr6_3:94627074-94627093 | None:intergenic | 30.0% |
| !!! | GTCTTTTTTCTCACCATTTT+TGG | + | chr6_3:94627085-94627104 | Msa0966420:intron | 30.0% |
| AGATTAGGTTTGAAGAATTG+TGG | + | chr6_3:94627187-94627206 | Msa0966420:intron | 30.0% | |
| !!! | TTTATTTTATTTCGGTCCAC+GGG | + | chr6_3:94627319-94627338 | Msa0966420:intron | 30.0% |
| TAAAAGAAATAACAAACCCG+TGG | - | chr6_3:94627338-94627357 | None:intergenic | 30.0% | |
| CGACAAACCTATCAAAATAA+GGG | - | chr6_3:94627455-94627474 | None:intergenic | 30.0% | |
| CCAACAAACTTGTGAAAATA+GGG | - | chr6_3:94627485-94627504 | None:intergenic | 30.0% | |
| ACCAACAAACTTGTGAAAAT+AGG | - | chr6_3:94627486-94627505 | None:intergenic | 30.0% | |
| AACAACAACAACAACAACAA+CGG | + | chr6_3:94627744-94627763 | Msa0966420:CDS | 30.0% | |
| ATATGCCAATGAATCTGATT+TGG | + | chr6_3:94627860-94627879 | Msa0966420:CDS | 30.0% | |
| GTATTCCAAATCAGATTCAT+TGG | - | chr6_3:94627868-94627887 | None:intergenic | 30.0% | |
| CTGAATCGTAGATTTCAAAT+TGG | - | chr6_3:94627932-94627951 | None:intergenic | 30.0% | |
| AAGAACATGCTGAGATTGAA+AGG | + | chr6_3:94624584-94624603 | Msa0966420:CDS | 35.0% | |
| ! | CATTTTTAACAAGTGCCCTT+AGG | - | chr6_3:94624871-94624890 | None:intergenic | 35.0% |
| GCATTAATATATGCAAGGTC+TGG | + | chr6_3:94625051-94625070 | Msa0966420:intron | 35.0% | |
| !!! | ATGCTTCTTTTTTTTTGCCG+GGG | - | chr6_3:94625085-94625104 | None:intergenic | 35.0% |
| AAGAGTCCTGTGATACAAAA+TGG | + | chr6_3:94625225-94625244 | Msa0966420:intron | 35.0% | |
| ! | ATAGGCTTTTGTTAGATGAG+TGG | - | chr6_3:94625283-94625302 | None:intergenic | 35.0% |
| ACTCATCTAACAAAAGCCTA+TGG | + | chr6_3:94625282-94625301 | Msa0966420:intron | 35.0% | |
| TTATCGTATGCTACTACCAT+AGG | - | chr6_3:94625301-94625320 | None:intergenic | 35.0% | |
| GGAAATGAGCAAAATCAGAT+GGG | - | chr6_3:94625334-94625353 | None:intergenic | 35.0% | |
| TGGAAATGAGCAAAATCAGA+TGG | - | chr6_3:94625335-94625354 | None:intergenic | 35.0% | |
| GTCAATTAACTCACGTTAAG+TGG | - | chr6_3:94625355-94625374 | None:intergenic | 35.0% | |
| ! | CTCATGCTCAACAATTTTGA+TGG | + | chr6_3:94625433-94625452 | Msa0966420:intron | 35.0% |
| !!! | TTATTTTTTTTGGTGGTGGC+CGG | + | chr6_3:94625489-94625508 | Msa0966420:intron | 35.0% |
| CATAAAATATGCAAGGTACG+AGG | - | chr6_3:94625523-94625542 | None:intergenic | 35.0% | |
| AACACCAGACAGAATAAAAG+CGG | + | chr6_3:94625637-94625656 | Msa0966420:intron | 35.0% | |
| TGAATTGGATACCAAGTATG+AGG | - | chr6_3:94626003-94626022 | None:intergenic | 35.0% | |
| GTTTGAAGGACTAAAAAGTG+TGG | - | chr6_3:94626555-94626574 | None:intergenic | 35.0% | |
| ! | TTTGAGACCAAAGTTTCAGA+CGG | + | chr6_3:94626591-94626610 | Msa0966420:intron | 35.0% |
| CATAACTAGATTGCGTTACT+TGG | + | chr6_3:94626886-94626905 | Msa0966420:intron | 35.0% | |
| TCTTTATCCTATGAAGTCGA+TGG | - | chr6_3:94626973-94626992 | None:intergenic | 35.0% | |
| ATACGATCTAGTGAATCTAG+GGG | - | chr6_3:94627011-94627030 | None:intergenic | 35.0% | |
| GATACGATCTAGTGAATCTA+GGG | - | chr6_3:94627012-94627031 | None:intergenic | 35.0% | |
| ATCATTCTCCAAAAACATGC+AGG | + | chr6_3:94627063-94627082 | Msa0966420:intron | 35.0% | |
| GTAACTTTACGTGCCAAAAA+TGG | - | chr6_3:94627101-94627120 | None:intergenic | 35.0% | |
| !! | CAAGACGTTGAAGTGTTTTA+TGG | - | chr6_3:94627150-94627169 | None:intergenic | 35.0% |
| ATTGTGGAAGAGATATAGCA+AGG | + | chr6_3:94627203-94627222 | Msa0966420:intron | 35.0% | |
| TTGTGGAAGAGATATAGCAA+GGG | + | chr6_3:94627204-94627223 | Msa0966420:intron | 35.0% | |
| ! | AATCAAAAAGTGTGCCTCTT+AGG | - | chr6_3:94627384-94627403 | None:intergenic | 35.0% |
| ! | TCGAGATTTTCTCTCAATTC+TGG | + | chr6_3:94627416-94627435 | Msa0966420:intron | 35.0% |
| ! | AGATTTTCTCTCAATTCTGG+TGG | + | chr6_3:94627419-94627438 | Msa0966420:intron | 35.0% |
| CCTATCAAAATAAGGGTTTC+CGG | - | chr6_3:94627448-94627467 | None:intergenic | 35.0% | |
| GCGACAAACCTATCAAAATA+AGG | - | chr6_3:94627456-94627475 | None:intergenic | 35.0% | |
| ! | CCCTATTTTCACAAGTTTGT+TGG | + | chr6_3:94627482-94627501 | Msa0966420:intron | 35.0% |
| ! | TTCTCCTGTTCTTTTCCTAA+CGG | + | chr6_3:94627588-94627607 | Msa0966420:CDS | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+GGG | - | chr6_3:94627742-94627761 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTTGTTGTTG+TGG | - | chr6_3:94627743-94627762 | None:intergenic | 35.0% |
| TAGAACCAATTCCGGTTATT+AGG | + | chr6_3:94627793-94627812 | Msa0966420:CDS | 35.0% | |
| AGAACCAATTCCGGTTATTA+GGG | + | chr6_3:94627794-94627813 | Msa0966420:CDS | 35.0% | |
| TTCGGTACGTAACAATAGTA+GGG | - | chr6_3:94627833-94627852 | None:intergenic | 35.0% | |
| TTTCGGTACGTAACAATAGT+AGG | - | chr6_3:94627834-94627853 | None:intergenic | 35.0% | |
| AACAAAGATTACTCCTTGAC+CGG | + | chr6_3:94627975-94627994 | Msa0966420:CDS | 35.0% | |
| ! | TTCTGAAAGCATGTCTCAAA+AGG | - | chr6_3:94628001-94628020 | None:intergenic | 35.0% |
| AATTCTTGCGCTATTGAAAG+AGG | + | chr6_3:94628097-94628116 | Msa0966420:CDS | 35.0% | |
| TGGAAGTTGAAGATAGCAGA+AGG | + | chr6_3:94624484-94624503 | Msa0966420:CDS | 40.0% | |
| AAGTTGAAGATAGCAGAAGG+AGG | + | chr6_3:94624487-94624506 | Msa0966420:CDS | 40.0% | |
| TGGGAATTTGATCCAAATGC+AGG | + | chr6_3:94624553-94624572 | Msa0966420:CDS | 40.0% | |
| TCAATCTCAGCATGTTCTTG+TGG | - | chr6_3:94624583-94624602 | None:intergenic | 40.0% | |
| ! | GAGGTCAGAACTTTGTTTGA+TGG | - | chr6_3:94624641-94624660 | None:intergenic | 40.0% |
| ! | AAAGTTCTGACCTCTTGATG+AGG | + | chr6_3:94624647-94624666 | Msa0966420:CDS | 40.0% |
| ! | GCATAACCCATTTTGAACTC+TGG | - | chr6_3:94624835-94624854 | None:intergenic | 40.0% |
| TGCTATCAAGAGATGACCTA+AGG | + | chr6_3:94624852-94624871 | Msa0966420:intron | 40.0% | |
| GCTATCAAGAGATGACCTAA+GGG | + | chr6_3:94624853-94624872 | Msa0966420:intron | 40.0% | |
| !! | TCTGCTCTCATTGAGTTGAT+TGG | - | chr6_3:94625197-94625216 | None:intergenic | 40.0% |
| ATCAACTCAATGAGAGCAGA+CGG | + | chr6_3:94625197-94625216 | Msa0966420:intron | 40.0% | |
| !!! | CTTCTGCCATTTTGTATCAC+AGG | - | chr6_3:94625234-94625253 | None:intergenic | 40.0% |
| !!! | TATTTTTTTTGGTGGTGGCC+GGG | + | chr6_3:94625490-94625509 | Msa0966420:intron | 40.0% |
| TTCACAAGCCACTGTTATGT+AGG | - | chr6_3:94625663-94625682 | None:intergenic | 40.0% | |
| ! | ACAGTGGCTTGTGAAAATCT+TGG | + | chr6_3:94625668-94625687 | Msa0966420:intron | 40.0% |
| TACCAAGTATGAGGCAATGA+AGG | - | chr6_3:94625994-94626013 | None:intergenic | 40.0% | |
| TACGGGGACTTAAAATGCTA+AGG | + | chr6_3:94626653-94626672 | Msa0966420:intron | 40.0% | |
| ACGGGGACTTAAAATGCTAA+GGG | + | chr6_3:94626654-94626673 | Msa0966420:intron | 40.0% | |
| CATCTTAACGTACGGTATTG+AGG | - | chr6_3:94626857-94626876 | None:intergenic | 40.0% | |
| !! | GTACTTACCATCGACTTCAT+AGG | + | chr6_3:94626963-94626982 | Msa0966420:intron | 40.0% |
| GGATACGATCTAGTGAATCT+AGG | - | chr6_3:94627013-94627032 | None:intergenic | 40.0% | |
| TTGGCACGTAAAGTTACGTA+TGG | + | chr6_3:94627104-94627123 | Msa0966420:intron | 40.0% | |
| TGTGGAAGAGATATAGCAAG+GGG | + | chr6_3:94627205-94627224 | Msa0966420:intron | 40.0% | |
| CTCTTAGGCTACATAAGTTC+TGG | - | chr6_3:94627369-94627388 | None:intergenic | 40.0% | |
| CAGAACTTATGTAGCCTAAG+AGG | + | chr6_3:94627367-94627386 | Msa0966420:intron | 40.0% | |
| !!! | CCGGAAACCCTTATTTTGAT+AGG | + | chr6_3:94627445-94627464 | Msa0966420:intron | 40.0% |
| TGATCCGTTAGGAAAAGAAC+AGG | - | chr6_3:94627595-94627614 | None:intergenic | 40.0% | |
| CATCATCAATTCATCTCCCA+TGG | - | chr6_3:94627619-94627638 | None:intergenic | 40.0% | |
| !! | TGGGAGATGAATTGATGATG+AGG | + | chr6_3:94627619-94627638 | Msa0966420:CDS | 40.0% |
| !! | GGGAGATGAATTGATGATGA+GGG | + | chr6_3:94627620-94627639 | Msa0966420:CDS | 40.0% |
| ! | TAAGAAAGCTTTGATGGTCG+TGG | - | chr6_3:94627676-94627695 | None:intergenic | 40.0% |
| ! | CTGGTCTAAGAAAGCTTTGA+TGG | - | chr6_3:94627682-94627701 | None:intergenic | 40.0% |
| CAAAGCTTTCTTAGACCAGA+TGG | + | chr6_3:94627683-94627702 | Msa0966420:CDS | 40.0% | |
| !! | ATTGGTTCTACTCCTCTGTT+CGG | - | chr6_3:94627783-94627802 | None:intergenic | 40.0% |
| CAAACCCTAATAACCGGAAT+TGG | - | chr6_3:94627801-94627820 | None:intergenic | 40.0% | |
| AGACATGCTTTCAGAATTGC+AGG | + | chr6_3:94628005-94628024 | Msa0966420:CDS | 40.0% | |
| AAGATAGCAGAAGGAGGAGA+AGG | + | chr6_3:94624493-94624512 | Msa0966420:CDS | 45.0% | |
| AGATAGCAGAAGGAGGAGAA+GGG | + | chr6_3:94624494-94624513 | Msa0966420:CDS | 45.0% | |
| ACTTCATAGGACGTCAACAC+TGG | + | chr6_3:94624533-94624552 | Msa0966420:CDS | 45.0% | |
| CTTCATAGGACGTCAACACT+GGG | + | chr6_3:94624534-94624553 | Msa0966420:CDS | 45.0% | |
| TCTTGTGGTGTTCCTGCATT+TGG | - | chr6_3:94624568-94624587 | None:intergenic | 45.0% | |
| ATACCTGCATCCTCATCAAG+AGG | - | chr6_3:94624660-94624679 | None:intergenic | 45.0% | |
| TCAACTCAATGAGAGCAGAC+GGG | + | chr6_3:94625198-94625217 | Msa0966420:intron | 45.0% | |
| !!! | ATTTTTTTTGGTGGTGGCCG+GGG | + | chr6_3:94625491-94625510 | Msa0966420:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr6_3:94625552-94625571 | None:intergenic | 45.0% |
| !!! | TAGGCCGCTTTTATTCTGTC+TGG | - | chr6_3:94625644-94625663 | None:intergenic | 45.0% |
| AAAAGCGGCCTACATAACAG+TGG | + | chr6_3:94625652-94625671 | Msa0966420:intron | 45.0% | |
| CTCCTTCATTGCCTCATACT+TGG | + | chr6_3:94625989-94626008 | Msa0966420:intron | 45.0% | |
| !! | ATATAGCAAGGGGTTGATGC+AGG | + | chr6_3:94627215-94627234 | Msa0966420:intron | 45.0% |
| !! | CTCTCAATTCTGGTGGATTC+CGG | + | chr6_3:94627426-94627445 | Msa0966420:intron | 45.0% |
| TGATACCAACTGACGCAGTA+CGG | - | chr6_3:94627560-94627579 | None:intergenic | 45.0% | |
| !! | TTTTCCTAACGGATCAGCCA+TGG | + | chr6_3:94627599-94627618 | Msa0966420:CDS | 45.0% |
| ! | TTTCCTAACGGATCAGCCAT+GGG | + | chr6_3:94627600-94627619 | Msa0966420:CDS | 45.0% |
| ATGATGAGGGAAGAGTTTGC+CGG | + | chr6_3:94627633-94627652 | Msa0966420:CDS | 45.0% | |
| AGCTTTCTTAGACCAGATGG+TGG | + | chr6_3:94627686-94627705 | Msa0966420:CDS | 45.0% | |
| AACGGAAACAATCCGAACAG+AGG | + | chr6_3:94627768-94627787 | Msa0966420:CDS | 45.0% | |
| CAGAGGAGTAGAACCAATTC+CGG | + | chr6_3:94627785-94627804 | Msa0966420:CDS | 45.0% | |
| ! | GAAAGCATGTCTCAAAAGGC+CGG | - | chr6_3:94627997-94628016 | None:intergenic | 45.0% |
| TAACTCGTGTTCGCGTAAGA+TGG | + | chr6_3:94628028-94628047 | Msa0966420:CDS | 45.0% | |
| !!! | TTAAAATTTGTAATTTTTTA+TGG | - | chr6_3:94625713-94625732 | None:intergenic | 5.0% |
| TGACCTCTTGATGAGGATGC+AGG | + | chr6_3:94624654-94624673 | Msa0966420:CDS | 50.0% | |
| AAGGTACGAGGTTGAAACCC+CGG | - | chr6_3:94625511-94625530 | None:intergenic | 50.0% | |
| GGTAAGAGTCACGGTTATGC+CGG | - | chr6_3:94627655-94627674 | None:intergenic | 50.0% | |
| GATGGTCGTGGTAAGAGTCA+CGG | - | chr6_3:94627664-94627683 | None:intergenic | 50.0% | |
| ATGTCTCAAAAGGCCGGTCA+AGG | - | chr6_3:94627991-94628010 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCGCG+AGG | - | chr6_3:94625021-94625040 | None:intergenic | 55.0% | |
| CCTCGCGAGCTTAACTCAGT+TGG | + | chr6_3:94625018-94625037 | Msa0966420:intron | 55.0% | |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | + | chr6_3:94625065-94625084 | Msa0966420:intron | 55.0% |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr6_3:94625557-94625576 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr6_3:94625554-94625573 | Msa0966420:intron | 55.0% | |
| !! | TAGCAAGGGGTTGATGCAGG+AGG | + | chr6_3:94627218-94627237 | Msa0966420:intron | 55.0% |
| !! | AGCAAGGGGTTGATGCAGGA+GGG | + | chr6_3:94627219-94627238 | Msa0966420:intron | 55.0% |
| ! | TGACGCAGTACGGAAGCGTA+GGG | - | chr6_3:94627550-94627569 | None:intergenic | 55.0% |
| ! | GCGTCAGTTGGTATCAGAGC+AGG | + | chr6_3:94627564-94627583 | Msa0966420:CDS | 55.0% |
| TCTCCCATGGCTGATCCGTT+AGG | - | chr6_3:94627606-94627625 | None:intergenic | 55.0% | |
| ! | TCTTAGACCAGATGGTGGCG+TGG | + | chr6_3:94627691-94627710 | Msa0966420:CDS | 55.0% |
| ! | CTGACGCAGTACGGAAGCGT+AGG | - | chr6_3:94627551-94627570 | None:intergenic | 60.0% |
| CGCTTCCGTACTGCGTCAGT+TGG | + | chr6_3:94627552-94627571 | Msa0966420:CDS | 60.0% | |
| TAGCTGTCCACGCCACCATC+TGG | - | chr6_3:94627701-94627720 | None:intergenic | 60.0% | |
| ! | GATGGTGGCGTGGACAGCTA+AGG | + | chr6_3:94627701-94627720 | Msa0966420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 94624392 | 94628136 | 94624392 | ID=Msa0966420;Name=Msa0966420 |
| chr6_3 | mRNA | 94624392 | 94628136 | 94624392 | ID=Msa0966420-mRNA-1;Parent=Msa0966420;Name=Msa0966420-mRNA-1;_AED=0.39;_eAED=0.40;_QI=89|0|0.5|1|1|1|2|0|264 |
| chr6_3 | exon | 94624392 | 94624675 | 94624392 | ID=Msa0966420-mRNA-1:exon:17559;Parent=Msa0966420-mRNA-1 |
| chr6_3 | exon | 94627537 | 94628136 | 94627537 | ID=Msa0966420-mRNA-1:exon:17560;Parent=Msa0966420-mRNA-1 |
| chr6_3 | five_prime_UTR | 94624392 | 94624480 | 94624392 | ID=Msa0966420-mRNA-1:five_prime_utr;Parent=Msa0966420-mRNA-1 |
| chr6_3 | CDS | 94624481 | 94624675 | 94624481 | ID=Msa0966420-mRNA-1:cds;Parent=Msa0966420-mRNA-1 |
| chr6_3 | CDS | 94627537 | 94628136 | 94627537 | ID=Msa0966420-mRNA-1:cds;Parent=Msa0966420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
