AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548660 MtrunA17_Chr4g0032401 95.821 335 9 3 1 333 1 332 0.0 654
Msa0548660 MtrunA17_Chr2g0328771 58.857 350 90 13 1 328 1 318 1.29e-113 332
Msa0548660 MtrunA17_Chr3g0088461 84.000 125 15 1 1 120 3 127 1.62e-72 228
Msa0548660 MtrunA17_Chr1g0193371 80.374 107 21 0 14 120 11 117 3.91e-59 194
Msa0548660 MtrunA17_Chr2g0330041 55.747 174 57 3 11 171 8 174 5.79e-58 192
Msa0548660 MtrunA17_Chr7g0270891 77.570 107 24 0 14 120 11 117 6.19e-57 188
Msa0548660 MtrunA17_Chr3g0117091 79.245 106 22 0 14 119 11 116 8.75e-57 187
Msa0548660 MtrunA17_Chr4g0058631 78.302 106 23 0 14 119 11 116 9.05e-57 188
Msa0548660 MtrunA17_Chr1g0211161 77.358 106 24 0 14 119 12 117 2.53e-56 182
Msa0548660 MtrunA17_Chr1g0193801 75.701 107 26 0 14 120 11 117 7.75e-56 186
Msa0548660 MtrunA17_Chr8g0342521 63.504 137 43 2 11 147 8 137 2.33e-55 184
Msa0548660 MtrunA17_Chr7g0271241 82.828 99 17 0 14 112 11 109 3.36e-55 184
Msa0548660 MtrunA17_Chr8g0342541 71.560 109 31 0 11 119 8 116 1.30e-54 182
Msa0548660 MtrunA17_Chr8g0387421 68.182 110 35 0 11 120 8 117 2.77e-53 177
Msa0548660 MtrunA17_Chr1g0203441 71.818 110 31 0 10 119 8 117 4.33e-52 173
Msa0548660 MtrunA17_Chr5g0397231 56.579 152 58 3 11 162 8 151 8.51e-52 174
Msa0548660 MtrunA17_Chr2g0309911 50.000 182 80 5 14 188 10 187 1.22e-50 171
Msa0548660 MtrunA17_Chr8g0342481 69.027 113 34 1 8 119 5 117 1.36e-50 173
Msa0548660 MtrunA17_Chr6g0470971 58.955 134 52 1 5 135 4 137 9.87e-50 167
Msa0548660 MtrunA17_Chr4g0042671 54.861 144 58 1 15 158 12 148 1.12e-49 171
Msa0548660 MtrunA17_Chr2g0281071 66.667 111 37 0 12 122 10 120 2.80e-49 168
Msa0548660 MtrunA17_Chr3g0131121 69.903 103 31 0 17 119 14 116 1.01e-48 165
Msa0548660 MtrunA17_Chr4g0048511 64.602 113 40 0 10 122 8 120 1.64e-48 166
Msa0548660 MtrunA17_Chr5g0435101 52.632 152 56 3 1 152 1 136 2.11e-48 161
Msa0548660 MtrunA17_Chr4g0037141 48.824 170 73 3 17 184 14 171 2.33e-48 164
Msa0548660 MtrunA17_Chr2g0323411 60.000 130 45 1 13 142 10 132 5.56e-48 164
Msa0548660 MtrunA17_Chr8g0385321 66.990 103 34 0 17 119 14 116 8.31e-48 163
Msa0548660 MtrunA17_Chr3g0115821 62.500 112 42 0 11 122 8 119 1.29e-47 164
Msa0548660 MtrunA17_Chr7g0228891 58.140 129 51 1 15 140 12 140 5.13e-47 160
Msa0548660 MtrunA17_Chr5g0434571 57.895 133 49 1 15 140 48 180 5.94e-47 162
Msa0548660 MtrunA17_Chr7g0217741 64.815 108 38 0 15 122 12 119 6.10e-47 160
Msa0548660 MtrunA17_Chr2g0323351 64.286 112 40 0 15 126 12 123 6.17e-47 159
Msa0548660 MtrunA17_Chr3g0110351 66.667 108 36 0 15 122 12 119 7.22e-47 160
Msa0548660 MtrunA17_Chr1g0203411 57.895 114 48 0 15 128 12 125 2.43e-46 159
Msa0548660 MtrunA17_Chr7g0274581 42.857 203 95 5 15 217 12 193 2.68e-46 156
Msa0548660 MtrunA17_Chr5g0410961 55.814 129 50 1 15 143 12 133 4.64e-46 159
Msa0548660 MtrunA17_Chr4g0057031 63.889 108 39 0 15 122 12 119 8.92e-46 157
Msa0548660 MtrunA17_Chr4g0044421 48.538 171 73 4 1 161 1 166 1.51e-45 153
Msa0548660 MtrunA17_Chr4g0070611 45.732 164 89 0 15 178 12 175 1.61e-45 157
Msa0548660 MtrunA17_Chr4g0039971 55.385 130 51 1 13 142 11 133 2.88e-45 157
Msa0548660 MtrunA17_Chr5g0395281 52.817 142 56 2 1 142 2 132 5.73e-45 155
Msa0548660 MtrunA17_Chr7g0228231 44.776 201 95 5 1 193 1 193 7.23e-45 152
Msa0548660 MtrunA17_Chr8g0349261 61.062 113 43 1 11 122 9 121 7.51e-45 155
Msa0548660 MtrunA17_Chr1g0187761 60.345 116 46 0 15 130 12 127 8.66e-45 154
Msa0548660 MtrunA17_Chr6g0452271 57.143 112 48 0 11 122 8 119 3.24e-44 154
Msa0548660 MtrunA17_Chr6g0453471 41.827 208 96 3 15 197 12 219 1.02e-43 154
Msa0548660 MtrunA17_Chr4g0070641 49.635 137 69 0 15 151 12 148 1.10e-43 148
Msa0548660 MtrunA17_Chr4g0068061 57.627 118 46 1 15 128 12 129 2.13e-43 152
Msa0548660 MtrunA17_Chr1g0167661 62.162 111 42 0 15 125 12 122 2.78e-43 149
Msa0548660 MtrunA17_Chr3g0103281 61.111 108 42 0 15 122 12 119 3.18e-43 151
Msa0548660 MtrunA17_Chr7g0275911 59.813 107 43 0 15 121 12 118 6.86e-43 149
Msa0548660 MtrunA17_Chr4g0022931 57.018 114 49 0 8 121 6 119 1.03e-42 149
Msa0548660 MtrunA17_Chr8g0343831 61.111 108 42 0 17 124 10 117 1.66e-42 147
Msa0548660 MtrunA17_Chr1g0167691 62.857 105 39 0 15 119 12 116 1.93e-42 147
Msa0548660 MtrunA17_Chr3g0121241 59.813 107 43 0 15 121 42 148 2.09e-42 149
Msa0548660 MtrunA17_Chr1g0209661 52.500 120 57 0 3 122 15 134 2.91e-42 149
Msa0548660 MtrunA17_Chr6g0450101 56.757 111 48 0 12 122 11 121 3.42e-42 145
Msa0548660 MtrunA17_Chr7g0261281 61.905 105 40 0 15 119 12 116 6.39e-42 147
Msa0548660 MtrunA17_Chr4g0022901 60.377 106 42 0 13 118 11 116 1.08e-41 146
Msa0548660 MtrunA17_Chr4g0055981 52.381 126 60 0 9 134 49 174 2.60e-41 144
Msa0548660 MtrunA17_Chr1g0168661 62.264 106 40 0 16 121 22 127 2.79e-41 144
Msa0548660 MtrunA17_Chr8g0346561 59.434 106 43 0 15 120 12 117 5.51e-41 145
Msa0548660 MtrunA17_Chr5g0417821 61.111 108 42 0 15 122 7 114 5.71e-41 144
Msa0548660 MtrunA17_Chr1g0194951 59.633 109 44 0 15 123 12 120 1.33e-40 145
Msa0548660 MtrunA17_Chr4g0022911 56.140 114 49 1 13 125 11 124 1.65e-40 143
Msa0548660 MtrunA17_Chr2g0311221 61.165 103 40 0 11 113 10 112 2.49e-40 144
Msa0548660 MtrunA17_Chr7g0254411 54.701 117 53 0 15 131 12 128 3.60e-40 144
Msa0548660 MtrunA17_Chr4g0060721 52.756 127 59 1 15 140 13 139 4.07e-40 144
Msa0548660 MtrunA17_Chr3g0092401 52.893 121 57 0 15 135 13 133 6.33e-40 142
Msa0548660 MtrunA17_Chr7g0217221 59.434 106 43 0 15 120 12 117 7.81e-40 141
Msa0548660 MtrunA17_Chr3g0099131 57.547 106 45 0 15 120 41 146 3.25e-39 145
Msa0548660 MtrunA17_Chr1g0151941 51.818 110 52 1 11 119 8 117 3.62e-39 139
Msa0548660 MtrunA17_Chr1g0186061 59.259 108 44 0 14 121 19 126 4.07e-39 139
Msa0548660 MtrunA17_Chr1g0152011 40.556 180 82 4 15 176 12 184 4.60e-39 141
Msa0548660 MtrunA17_Chr1g0154031 58.654 104 43 0 15 118 76 179 1.20e-38 141
Msa0548660 MtrunA17_Chr8g0354661 57.692 104 44 0 15 118 37 140 1.27e-38 144
Msa0548660 MtrunA17_Chr6g0453211 61.616 99 38 0 15 113 12 110 1.58e-38 139
Msa0548660 MtrunA17_Chr1g0194301 50.833 120 59 0 7 126 25 144 1.62e-38 138
Msa0548660 MtrunA17_Chr1g0194291 51.667 120 58 0 7 126 13 132 1.77e-38 137
Msa0548660 MtrunA17_Chr5g0400821 40.000 185 101 3 11 185 8 192 2.15e-38 138
Msa0548660 MtrunA17_Chr1g0180391 50.847 118 58 0 3 120 7 124 3.58e-38 135
Msa0548660 MtrunA17_Chr3g0080861 55.660 106 47 0 15 120 37 142 5.67e-38 141
Msa0548660 MtrunA17_Chr4g0028311 52.991 117 54 1 11 126 8 124 1.38e-37 137
Msa0548660 MtrunA17_Chr7g0247131 60.204 98 37 1 47 142 10 107 5.08e-37 134
Msa0548660 MtrunA17_Chr4g0022881 56.863 102 44 0 16 117 13 114 9.51e-37 132
Msa0548660 MtrunA17_Chr4g0022891 55.882 102 45 0 15 116 12 113 1.18e-36 132
Msa0548660 MtrunA17_Chr8g0342531 67.073 82 27 0 11 92 8 89 1.42e-36 129
Msa0548660 MtrunA17_Chr8g0342511 70.000 80 24 0 11 90 8 87 1.61e-36 127
Msa0548660 MtrunA17_Chr2g0327821 45.985 137 61 1 14 137 5 141 2.25e-36 131
Msa0548660 MtrunA17_Chr3g0135311 52.727 110 51 1 11 119 8 117 2.69e-36 134
Msa0548660 MtrunA17_Chr2g0322521 57.547 106 45 0 15 120 29 134 2.84e-36 135
Msa0548660 MtrunA17_Chr2g0293911 56.481 108 47 0 15 122 24 131 3.51e-36 133
Msa0548660 MtrunA17_Chr1g0192411 51.754 114 55 0 7 120 4 117 4.37e-36 134
Msa0548660 MtrunA17_Chr7g0269831 56.522 115 50 0 15 129 12 126 8.44e-36 132
Msa0548660 MtrunA17_Chr7g0264641 52.294 109 51 1 15 122 12 120 9.33e-36 130
Msa0548660 MtrunA17_Chr4g0068921 49.587 121 61 0 6 126 15 135 1.58e-35 127
Msa0548660 MtrunA17_Chr2g0327351 58.000 100 41 1 15 113 12 111 2.87e-35 130
Msa0548660 MtrunA17_Chr7g0240821 49.219 128 62 2 20 145 6 132 3.03e-35 128
Msa0548660 MtrunA17_Chr4g0030881 49.167 120 54 1 16 128 8 127 6.74e-35 128
Msa0548660 MtrunA17_Chr5g0434911 54.286 105 48 0 15 119 21 125 1.45e-34 127
Msa0548660 MtrunA17_Chr5g0434831 54.286 105 48 0 15 119 7 111 1.52e-34 125
Msa0548660 MtrunA17_Chr5g0434931 52.381 105 50 0 15 119 35 139 2.04e-34 127
Msa0548660 MtrunA17_Chr8g0342461 66.279 86 28 1 8 92 5 90 2.78e-34 122
Msa0548660 MtrunA17_Chr8g0342471 66.279 86 28 1 8 92 5 90 3.54e-34 122
Msa0548660 MtrunA17_Chr4g0054391 55.340 103 45 1 11 112 8 110 6.81e-34 126
Msa0548660 MtrunA17_Chr8g0360111 52.830 106 50 0 10 115 20 125 6.87e-33 122
Msa0548660 MtrunA17_Chr4g0042611 62.821 78 29 0 14 91 11 88 7.73e-33 117
Msa0548660 MtrunA17_Chr5g0440781 41.667 144 77 3 16 158 13 150 9.27e-33 120
Msa0548660 MtrunA17_Chr4g0072751 53.922 102 46 1 13 113 10 111 1.01e-32 124
Msa0548660 MtrunA17_Chr6g0487491 48.413 126 56 2 11 127 8 133 1.29e-32 122
Msa0548660 MtrunA17_Chr7g0220341 51.351 111 52 1 11 119 21 131 1.71e-32 122
Msa0548660 MtrunA17_Chr5g0440761 47.826 115 58 2 16 129 13 126 2.72e-32 121
Msa0548660 MtrunA17_Chr5g0441141 47.826 115 58 2 16 129 13 126 2.95e-32 121
Msa0548660 MtrunA17_Chr5g0434841 51.429 105 51 0 15 119 20 124 3.03e-32 122
Msa0548660 MtrunA17_Chr7g0228991 51.429 105 51 0 15 119 29 133 7.68e-32 120
Msa0548660 MtrunA17_Chr8g0334881 41.447 152 76 3 10 149 5 155 4.26e-31 119
Msa0548660 MtrunA17_Chr5g0441131 50.000 106 52 1 16 120 10 115 3.23e-30 113
Msa0548660 MtrunA17_Chr5g0395221 62.500 80 30 0 12 91 9 88 1.56e-29 108
Msa0548660 MtrunA17_Chr4g0013361 45.833 120 64 1 15 133 10 129 2.79e-29 114
Msa0548660 MtrunA17_Chr4g0053431 39.205 176 88 5 17 180 5 173 5.70e-29 112
Msa0548660 MtrunA17_Chr2g0323321 60.000 85 34 0 11 95 7 91 1.84e-28 106
Msa0548660 MtrunA17_Chr3g0099141 52.941 85 40 0 13 97 38 122 5.19e-28 106
Msa0548660 MtrunA17_Chr6g0454921 48.113 106 54 1 17 122 15 119 1.09e-27 107
Msa0548660 MtrunA17_Chr5g0401731 48.113 106 54 1 17 122 15 119 1.17e-27 110
Msa0548660 MtrunA17_Chr5g0429661 40.288 139 79 2 15 150 120 257 1.21e-27 110
Msa0548660 MtrunA17_Chr2g0294811 59.740 77 31 0 15 91 12 88 2.02e-27 103
Msa0548660 MtrunA17_Chr4g0008551 50.980 102 49 1 17 118 38 138 5.01e-27 108
Msa0548660 MtrunA17_Chr3g0133601 47.863 117 60 1 17 133 37 152 4.93e-26 103
Msa0548660 MtrunA17_Chr7g0238631 46.296 108 57 1 12 119 108 214 1.23e-25 107
Msa0548660 MtrunA17_Chr3g0139671 46.296 108 57 1 12 119 80 186 1.55e-25 107
Msa0548660 MtrunA17_Chr3g0117511 44.444 117 62 2 2 118 170 283 3.46e-25 105
Msa0548660 MtrunA17_Chr5g0434901 60.294 68 27 0 49 116 7 74 3.56e-24 95.5
Msa0548660 MtrunA17_Chr7g0229101 60.000 70 28 0 47 116 4 73 4.58e-24 97.8
Msa0548660 MtrunA17_Chr6g0460661 40.171 117 67 2 12 127 11 125 4.81e-24 96.3
Msa0548660 MtrunA17_Chr4g0058991 41.818 110 63 1 9 118 201 309 1.08e-23 101
Msa0548660 MtrunA17_Chr5g0437321 47.664 107 55 1 9 115 11 116 1.15e-23 98.6
Msa0548660 MtrunA17_Chr5g0425591 51.220 82 39 1 16 96 10 91 1.26e-23 93.2
Msa0548660 MtrunA17_Chr6g0480581 45.545 101 54 1 17 117 4 103 1.29e-23 97.4
Msa0548660 MtrunA17_Chr7g0229131 57.746 71 30 0 47 117 4 74 1.40e-23 95.5
Msa0548660 MtrunA17_Chr6g0460671 42.735 117 65 2 12 127 93 208 1.88e-23 99.4
Msa0548660 MtrunA17_Chr5g0417621 41.441 111 64 1 13 123 130 239 4.22e-23 99.4
Msa0548660 MtrunA17_Chr1g0157731 43.519 108 60 1 12 119 86 192 4.42e-23 100
Msa0548660 MtrunA17_Chr4g0042501 39.850 133 76 3 5 136 94 223 4.47e-23 99.0
Msa0548660 MtrunA17_Chr6g0453751 46.392 97 43 2 9 96 14 110 2.01e-21 88.6
Msa0548660 MtrunA17_Chr1g0177901 40.000 130 68 3 27 156 7 126 3.52e-21 90.1
Msa0548660 MtrunA17_Chr3g0093811 47.674 86 42 1 40 122 4 89 1.39e-20 89.7
Msa0548660 MtrunA17_Chr7g0228531 42.202 109 60 3 17 125 220 325 2.48e-20 91.3
Msa0548660 MtrunA17_Chr5g0397841 44.118 102 56 1 11 112 104 204 4.11e-20 90.9
Msa0548660 MtrunA17_Chr3g0125801 42.593 108 59 2 17 123 16 121 4.90e-20 88.6
Msa0548660 MtrunA17_Chr7g0228401 47.191 89 44 2 36 124 298 383 1.97e-19 89.0
Msa0548660 MtrunA17_Chr7g0254261 42.157 102 58 1 17 118 89 189 1.05e-18 85.9
Msa0548660 MtrunA17_Chr7g0233061 38.261 115 68 3 17 131 180 291 4.46e-18 84.0
Msa0548660 MtrunA17_Chr7g0228481 39.450 109 63 3 17 125 220 325 5.44e-17 81.3
Msa0548660 MtrunA17_Chr1g0193901 50.000 92 44 2 7 96 3 94 1.43e-16 74.7
Msa0548660 MtrunA17_Chr1g0193891 50.000 92 44 2 7 96 3 94 1.43e-16 74.7
Msa0548660 MtrunA17_Chr1g0193871 50.000 92 44 2 7 96 3 94 1.43e-16 74.7
Msa0548660 MtrunA17_Chr1g0193881 50.000 92 44 2 7 96 3 94 1.43e-16 74.7
Msa0548660 MtrunA17_Chr7g0238651 39.362 94 55 1 20 111 10 103 6.47e-16 77.8
Msa0548660 MtrunA17_Chr5g0416341 36.634 101 63 1 20 120 29 128 8.78e-16 77.8
Msa0548660 MtrunA17_Chr8g0362231 36.283 113 70 2 20 131 25 136 1.54e-15 77.0
Msa0548660 MtrunA17_Chr5g0434871 60.465 43 17 0 77 119 2 44 1.35e-13 65.1
Msa0548660 MtrunA17_Chr3g0104491 38.272 81 45 2 56 132 1 80 1.45e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548660 AT3G08500.1 46.260 361 141 13 1 331 3 340 3.01e-75 235
Msa0548660 AT5G12870.1 82.540 126 19 1 1 123 1 126 4.04e-71 223
Msa0548660 AT1G09540.1 79.439 107 22 0 14 120 11 117 6.74e-59 194
Msa0548660 AT5G26660.1 79.439 107 22 0 14 120 11 117 8.20e-58 191
Msa0548660 AT1G57560.1 78.302 106 23 0 14 119 11 116 1.11e-57 189
Msa0548660 AT1G57560.2 78.302 106 23 0 14 119 11 116 1.25e-57 187
Msa0548660 AT3G13890.2 75.229 109 27 0 11 119 8 116 1.57e-57 190
Msa0548660 AT4G01680.3 77.570 107 24 0 14 120 11 117 2.55e-57 186
Msa0548660 AT4G01680.1 77.570 107 24 0 14 120 11 117 2.04e-56 186
Msa0548660 AT3G13890.1 69.492 118 27 1 11 119 8 125 1.50e-54 182
Msa0548660 AT1G63910.1 68.182 110 35 0 11 120 8 117 5.71e-53 179
Msa0548660 AT4G01680.2 69.748 119 24 1 14 120 11 129 6.31e-53 178
Msa0548660 AT3G12720.1 67.925 106 34 0 14 119 21 126 4.09e-50 169
Msa0548660 AT4G05100.1 68.519 108 34 0 15 122 13 120 8.85e-50 169
Msa0548660 AT4G21440.1 68.519 108 34 0 15 122 12 119 2.76e-49 168
Msa0548660 AT2G16720.1 51.829 164 66 2 17 178 14 166 5.70e-49 165
Msa0548660 AT5G54230.1 67.593 108 35 0 15 122 12 119 1.38e-48 166
Msa0548660 AT1G22640.1 61.864 118 43 1 13 130 10 125 3.46e-48 163
Msa0548660 AT3G02940.2 56.061 132 51 1 11 142 8 132 5.87e-48 164
Msa0548660 AT5G10280.1 63.393 112 41 0 11 122 8 119 8.24e-48 164
Msa0548660 AT3G02940.1 56.061 132 51 1 11 142 8 132 1.02e-47 163
Msa0548660 AT3G02940.3 56.061 132 51 1 11 142 8 132 1.02e-47 163
Msa0548660 AT4G12350.1 63.717 113 41 0 15 127 12 124 1.08e-47 162
Msa0548660 AT4G09460.1 66.990 103 34 0 17 119 14 116 1.15e-47 160
Msa0548660 AT4G34990.1 67.961 103 33 0 17 119 14 116 1.42e-47 162
Msa0548660 AT3G01140.2 65.741 108 37 0 15 122 12 119 2.31e-47 163
Msa0548660 AT4G38620.1 66.667 105 35 0 17 121 14 118 4.99e-47 160
Msa0548660 AT5G65230.1 64.815 108 38 0 15 122 12 119 5.19e-47 161
Msa0548660 AT4G28110.1 66.667 105 35 0 15 119 12 116 6.59e-47 160
Msa0548660 AT3G01140.1 63.393 112 41 0 11 122 51 162 6.62e-47 163
Msa0548660 AT5G15310.4 64.815 108 38 0 15 122 12 119 8.03e-47 159
Msa0548660 AT5G15310.2 64.815 108 38 0 15 122 12 119 9.11e-47 160
Msa0548660 AT5G15310.1 64.815 108 38 0 15 122 12 119 9.59e-47 161
Msa0548660 AT5G61420.2 46.988 166 87 1 15 180 12 176 1.24e-46 162
Msa0548660 AT5G60890.1 53.125 128 56 1 15 138 12 139 2.29e-46 159
Msa0548660 AT3G48920.1 64.815 108 38 0 10 117 13 120 2.83e-46 158
Msa0548660 AT2G31180.1 53.147 143 64 2 15 156 12 152 3.42e-46 157
Msa0548660 AT5G14340.1 56.923 130 53 1 15 141 24 153 5.51e-46 157
Msa0548660 AT5G14750.1 57.500 120 50 1 1 119 1 120 5.87e-46 155
Msa0548660 AT1G66230.1 65.741 108 37 0 15 122 12 119 7.54e-46 157
Msa0548660 AT4G25560.1 63.025 119 43 1 6 123 1 119 1.08e-45 157
Msa0548660 AT1G34670.1 62.963 108 40 0 15 122 12 119 1.88e-45 159
Msa0548660 AT3G61250.1 62.037 108 41 0 15 122 12 119 2.42e-45 157
Msa0548660 AT3G27920.1 48.649 148 70 1 10 157 9 150 2.59e-45 154
Msa0548660 AT5G16600.1 63.889 108 39 0 15 122 12 119 3.04e-45 157
Msa0548660 AT3G23250.1 42.286 175 99 1 15 189 12 184 3.50e-45 155
Msa0548660 AT5G16770.4 54.688 128 51 1 15 142 12 132 4.07e-45 157
Msa0548660 AT5G16770.3 54.688 128 51 1 15 142 12 132 4.07e-45 157
Msa0548660 AT1G35515.1 60.550 109 43 0 13 121 10 118 6.09e-45 153
Msa0548660 AT5G16770.1 54.688 128 51 1 15 142 12 132 6.48e-45 156
Msa0548660 AT5G16770.2 54.688 128 51 1 15 142 12 132 6.48e-45 156
Msa0548660 AT1G74430.1 64.762 105 37 0 15 119 12 116 6.94e-45 154
Msa0548660 AT3G27810.1 45.087 173 75 3 13 179 18 176 7.60e-45 153
Msa0548660 AT1G18570.1 64.762 105 37 0 15 119 13 117 7.95e-45 157
Msa0548660 AT4G22680.1 62.963 108 40 0 15 122 12 119 1.07e-44 154
Msa0548660 AT5G52600.1 43.503 177 90 2 5 173 2 176 1.32e-44 152
Msa0548660 AT5G52260.1 69.903 103 31 0 16 118 13 115 2.00e-44 153
Msa0548660 AT1G06180.1 66.667 105 35 0 15 119 12 116 2.02e-44 152
Msa0548660 AT5G40330.1 48.951 143 68 1 16 158 13 150 2.72e-44 151
Msa0548660 AT3G01530.1 56.452 124 53 1 3 125 12 135 9.68e-44 149
Msa0548660 AT2G47460.1 61.111 108 42 0 15 122 12 119 2.59e-43 153
Msa0548660 AT5G56110.1 60.550 109 43 0 15 123 12 120 3.94e-43 151
Msa0548660 AT5G07690.1 54.331 127 56 1 15 141 12 136 5.39e-43 151
Msa0548660 AT5G07700.1 60.952 105 41 0 15 119 12 116 6.28e-43 151
Msa0548660 AT5G07700.2 60.952 105 41 0 15 119 12 116 6.28e-43 151
Msa0548660 AT5G40350.1 57.407 108 46 0 12 119 14 121 6.31e-43 148
Msa0548660 AT1G56160.1 54.135 133 61 0 14 146 13 145 6.94e-43 150
Msa0548660 AT4G17785.2 60.185 108 43 0 15 122 13 120 9.64e-43 151
Msa0548660 AT1G79180.1 56.000 125 55 0 11 135 10 134 1.09e-42 149
Msa0548660 AT4G17785.1 60.185 108 43 0 15 122 13 120 1.27e-42 151
Msa0548660 AT1G16490.1 45.614 171 78 2 11 169 10 177 1.77e-42 148
Msa0548660 AT3G62610.1 56.198 121 48 1 15 130 12 132 4.34e-42 149
Msa0548660 AT5G62320.1 45.833 168 63 3 15 175 13 159 1.30e-41 145
Msa0548660 AT1G68320.1 36.000 275 158 9 12 277 16 281 1.60e-41 146
Msa0548660 AT5G49330.1 61.905 105 40 0 15 119 12 116 3.33e-41 147
Msa0548660 AT5G35550.1 45.732 164 85 1 14 177 13 172 3.81e-41 144
Msa0548660 AT3G13540.1 57.143 105 45 0 15 119 23 127 5.74e-41 144
Msa0548660 AT3G12820.1 58.716 109 45 0 11 119 10 118 6.29e-41 143
Msa0548660 AT1G74080.1 60.952 105 41 0 15 119 12 116 8.74e-41 145
Msa0548660 AT3G47600.1 51.799 139 64 2 15 153 12 147 9.91e-41 145
Msa0548660 AT3G30210.1 62.037 108 41 0 16 123 28 135 2.03e-40 143
Msa0548660 AT1G18710.1 58.095 105 44 0 15 119 12 116 2.21e-40 143
Msa0548660 AT1G08810.1 59.048 105 43 0 15 119 12 116 5.86e-40 142
Msa0548660 AT3G24310.1 61.321 106 41 0 16 121 19 124 6.23e-40 142
Msa0548660 AT1G48000.1 44.805 154 77 2 14 164 31 179 1.23e-39 140
Msa0548660 AT5G62470.2 56.481 108 47 0 15 122 12 119 1.46e-39 143
Msa0548660 AT4G26930.1 42.857 168 92 1 15 182 19 182 1.63e-39 144
Msa0548660 AT1G74650.1 57.798 109 46 0 14 122 11 119 2.21e-39 142
Msa0548660 AT4G13480.1 57.658 111 47 0 16 126 7 117 2.26e-39 140
Msa0548660 AT5G55020.1 57.547 106 45 0 15 120 26 131 2.82e-39 145
Msa0548660 AT2G47190.1 49.600 125 63 0 10 134 15 139 3.26e-39 140
Msa0548660 AT2G26960.1 43.293 164 82 2 17 170 22 184 4.05e-39 143
Msa0548660 AT3G49690.1 57.143 112 47 1 11 121 8 119 5.26e-39 140
Msa0548660 AT2G32460.1 56.604 106 46 0 15 120 18 123 5.53e-39 144
Msa0548660 AT5G26660.2 78.481 79 17 0 42 120 8 86 5.54e-39 140
Msa0548660 AT3G28470.1 59.223 103 42 0 11 113 8 110 6.24e-39 140
Msa0548660 AT2G32460.2 56.604 106 46 0 15 120 6 111 6.46e-39 144
Msa0548660 AT5G06100.1 57.547 106 45 0 15 120 32 137 6.81e-39 143
Msa0548660 AT5G65790.1 56.250 112 48 1 11 121 8 119 1.36e-38 141
Msa0548660 AT3G28910.1 54.464 112 51 0 15 126 12 123 1.57e-38 139
Msa0548660 AT5G06100.5 57.547 106 45 0 15 120 32 137 2.21e-38 143
Msa0548660 AT5G06100.2 57.547 106 45 0 15 120 32 137 2.21e-38 143
Msa0548660 AT5G06100.3 57.547 106 45 0 15 120 32 137 2.21e-38 143
Msa0548660 AT5G06100.4 57.547 106 45 0 15 120 32 137 2.21e-38 143
Msa0548660 AT1G25340.1 54.206 107 49 0 16 122 19 125 2.25e-38 138
Msa0548660 AT3G11440.2 54.630 108 49 0 13 120 39 146 5.46e-38 141
Msa0548660 AT5G62470.1 56.481 108 46 1 15 122 12 118 1.03e-37 138
Msa0548660 AT3G11440.3 54.630 108 49 0 13 120 39 146 1.80e-37 141
Msa0548660 AT3G11440.4 54.630 108 49 0 13 120 39 146 1.80e-37 141
Msa0548660 AT3G11440.1 54.630 108 49 0 13 120 39 146 1.80e-37 141
Msa0548660 AT5G23000.1 45.270 148 59 2 13 138 10 157 3.88e-37 136
Msa0548660 AT1G79180.2 44.937 158 54 1 11 135 10 167 7.63e-37 135
Msa0548660 AT3G06490.1 57.407 108 46 0 15 122 19 126 7.94e-37 135
Msa0548660 AT5G57620.1 56.604 106 45 1 15 119 12 117 1.28e-36 134
Msa0548660 AT5G59780.3 52.212 113 54 0 16 128 9 121 5.69e-36 130
Msa0548660 AT3G46130.1 51.327 113 55 0 16 128 10 122 9.87e-36 130
Msa0548660 AT3G53200.1 54.128 109 50 0 10 118 4 112 5.33e-35 128
Msa0548660 AT2G36890.1 51.818 110 52 1 11 119 8 117 1.88e-34 128
Msa0548660 AT2G36890.2 51.818 110 52 1 11 119 49 158 3.90e-34 128
Msa0548660 AT5G49620.1 51.786 112 54 0 15 126 26 137 5.84e-34 127
Msa0548660 AT4G37780.1 52.830 106 49 1 15 119 12 117 6.89e-34 127
Msa0548660 AT1G25340.2 51.402 107 47 1 16 122 19 120 1.60e-33 125
Msa0548660 AT1G66370.1 50.909 110 54 0 9 118 2 111 2.42e-33 124
Msa0548660 AT1G25340.3 51.402 107 47 1 16 122 19 120 3.11e-33 125
Msa0548660 AT2G26950.1 45.378 119 64 1 17 135 18 135 2.71e-32 124
Msa0548660 AT5G35550.2 47.407 135 67 1 43 177 45 175 3.18e-32 121
Msa0548660 AT3G27810.2 44.928 138 56 3 48 179 4 127 9.45e-32 117
Msa0548660 AT3G47600.2 49.606 127 57 3 27 153 22 141 1.04e-31 121
Msa0548660 AT1G66380.1 48.819 127 57 1 15 133 8 134 3.36e-31 115
Msa0548660 AT3G60460.1 49.206 126 58 3 1 125 1 121 8.30e-31 118
Msa0548660 AT5G49620.2 46.032 126 54 1 15 126 26 151 2.21e-30 117
Msa0548660 AT3G12820.2 72.464 69 19 0 51 119 2 70 2.46e-30 114
Msa0548660 AT5G14750.3 68.116 69 22 0 51 119 18 86 3.75e-30 113
Msa0548660 AT5G40350.2 63.514 74 27 0 46 119 3 76 5.66e-30 112
Msa0548660 AT1G56650.1 54.808 104 47 0 15 118 8 111 7.01e-30 114
Msa0548660 AT1G66390.1 54.808 104 47 0 15 118 8 111 3.98e-29 112
Msa0548660 AT3G46130.3 57.317 82 35 0 47 128 9 90 6.64e-29 111
Msa0548660 AT5G59780.2 58.025 81 34 0 48 128 20 100 1.08e-28 110
Msa0548660 AT3G46130.4 58.025 81 34 0 48 128 20 100 1.46e-28 110
Msa0548660 AT3G53200.2 64.789 71 25 0 48 118 9 79 3.34e-27 106
Msa0548660 AT5G11050.1 28.899 218 143 3 17 232 105 312 1.61e-26 108
Msa0548660 AT3G50060.1 40.625 128 75 1 17 144 6 132 6.85e-26 105
Msa0548660 AT5G67300.1 42.063 126 63 2 17 142 6 121 8.56e-26 105
Msa0548660 AT4G18770.1 40.426 141 80 3 13 152 213 350 1.16e-25 106
Msa0548660 AT3G55730.1 38.922 167 92 4 17 181 56 214 1.16e-25 106
Msa0548660 AT5G40360.1 40.678 118 68 2 10 127 151 266 1.49e-25 105
Msa0548660 AT3G09230.1 43.284 134 71 2 8 137 46 178 2.20e-25 105
Msa0548660 AT2G39880.1 49.107 112 55 2 7 118 41 150 7.04e-25 103
Msa0548660 AT4G37260.1 46.789 109 57 1 10 118 6 113 7.30e-25 102
Msa0548660 AT1G69560.1 31.250 208 124 5 11 204 101 303 9.15e-25 102
Msa0548660 AT5G02320.3 42.623 122 67 2 12 131 62 182 1.11e-24 104
Msa0548660 AT3G27785.1 42.857 119 63 3 1 118 175 289 1.11e-24 103
Msa0548660 AT5G02320.1 42.623 122 67 2 12 131 122 242 1.27e-24 104
Msa0548660 AT5G02320.2 42.623 122 67 2 12 131 122 242 1.27e-24 104
Msa0548660 AT1G69560.2 31.250 208 124 5 11 204 117 319 1.36e-24 102
Msa0548660 AT1G22640.3 65.714 70 22 1 61 130 1 68 1.58e-24 99.4
Msa0548660 AT5G58850.1 40.602 133 73 3 7 134 94 225 6.97e-24 101
Msa0548660 AT3G09370.1 45.794 107 57 1 12 118 125 230 7.18e-24 102
Msa0548660 AT3G09370.2 45.794 107 57 1 12 118 130 235 7.63e-24 102
Msa0548660 AT3G09370.3 45.794 107 57 1 12 118 138 243 1.02e-23 102
Msa0548660 AT2G23290.1 47.059 102 53 1 17 118 13 113 1.73e-23 99.0
Msa0548660 AT3G23250.2 65.574 61 21 0 61 121 1 61 2.77e-23 96.7
Msa0548660 AT1G17950.1 43.925 107 59 1 17 123 5 110 4.10e-23 96.7
Msa0548660 AT1G26780.2 44.144 111 59 2 15 124 96 204 5.50e-23 98.2
Msa0548660 AT1G26780.1 44.144 111 59 2 15 124 96 204 5.97e-23 97.1
Msa0548660 AT5G11510.3 43.519 108 60 1 12 119 76 182 6.83e-23 100
Msa0548660 AT5G11510.1 43.519 108 60 1 12 119 76 182 6.83e-23 100
Msa0548660 AT5G11510.4 43.519 108 60 1 12 119 76 182 6.83e-23 100
Msa0548660 AT2G25230.1 42.991 107 59 2 20 126 29 133 7.95e-23 95.5
Msa0548660 AT5G11510.2 43.519 108 60 1 12 119 76 182 8.73e-23 99.8
Msa0548660 AT5G11510.5 43.519 108 60 1 12 119 76 182 9.80e-23 99.8
Msa0548660 AT1G66380.3 50.526 95 39 1 47 133 7 101 1.10e-22 91.3
Msa0548660 AT3G29020.1 37.500 128 78 2 17 144 65 190 4.52e-22 93.6
Msa0548660 AT4G32730.5 41.667 108 62 1 12 119 82 188 6.78e-22 97.4
Msa0548660 AT4G32730.4 41.667 108 62 1 12 119 82 188 6.78e-22 97.4
Msa0548660 AT4G32730.3 41.667 108 62 1 12 119 82 188 6.78e-22 97.4
Msa0548660 AT4G32730.2 41.667 108 62 1 12 119 82 188 6.78e-22 97.4
Msa0548660 AT4G32730.1 41.667 108 62 1 12 119 82 188 7.16e-22 97.1
Msa0548660 AT3G29020.2 37.500 128 78 2 17 144 67 192 9.46e-22 94.0
Msa0548660 AT5G14750.4 62.712 59 22 0 61 119 1 59 3.36e-21 88.6
Msa0548660 AT5G14750.2 62.712 59 22 0 61 119 1 59 3.36e-21 88.6
Msa0548660 AT1G73410.1 43.925 107 59 1 17 123 6 111 3.89e-21 91.3
Msa0548660 AT5G17800.1 39.823 113 67 1 8 120 84 195 6.14e-21 92.0
Msa0548660 AT4G33450.1 38.393 112 68 1 16 127 18 128 7.56e-21 90.5
Msa0548660 AT1G73410.2 43.519 108 60 1 17 124 6 112 1.13e-20 89.0
Msa0548660 AT1G71030.2 55.072 69 31 0 54 122 5 73 5.09e-20 86.7
Msa0548660 AT1G71030.1 55.072 69 31 0 54 122 19 87 7.88e-20 86.3
Msa0548660 AT4G00540.2 41.739 115 61 3 15 125 101 213 5.11e-19 87.4
Msa0548660 AT1G18960.1 39.815 108 58 4 17 122 10 112 9.00e-19 85.9
Msa0548660 AT4G00540.1 41.739 115 61 3 15 125 99 211 9.64e-19 87.0
Msa0548660 AT5G40430.1 37.302 126 74 4 3 126 38 160 1.05e-18 84.7
Msa0548660 AT2G02820.3 40.196 102 60 1 20 121 33 133 2.40e-18 84.7
Msa0548660 AT2G02820.1 40.196 102 60 1 20 121 33 133 2.48e-18 85.9
Msa0548660 AT2G02820.2 40.196 102 60 1 20 121 33 133 3.78e-18 85.5
Msa0548660 AT1G66380.2 53.846 78 36 0 15 92 8 85 4.16e-18 79.3
Msa0548660 AT2G37630.1 38.017 121 72 2 20 137 7 127 6.79e-17 81.3
Msa0548660 AT5G39700.1 33.088 136 84 2 13 148 52 180 3.65e-16 76.3
Msa0548660 AT1G14350.2 38.235 102 62 1 20 121 28 128 6.43e-16 78.6
Msa0548660 AT1G14350.1 38.235 102 62 1 20 121 28 128 6.43e-16 78.6
Msa0548660 AT5G59780.1 50.000 56 28 0 73 128 1 56 6.57e-14 69.3
Msa0548660 AT3G46130.2 50.000 56 28 0 73 128 1 56 1.08e-13 69.3
Msa0548660 AT4G25560.2 64.706 51 17 1 74 123 3 53 3.33e-13 68.2
Msa0548660 AT1G74650.3 64.286 42 15 0 81 122 2 43 8.64e-12 64.7
Msa0548660 AT5G61420.1 39.175 97 58 1 84 180 2 97 1.30e-11 64.7
Msa0548660 AT1G14350.3 44.444 63 35 0 59 121 23 85 1.66e-11 65.1
Msa0548660 AT1G14350.4 44.444 63 35 0 59 121 23 85 1.66e-11 65.1
Msa0548660 AT3G28910.2 64.103 39 14 0 81 119 2 40 2.49e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGTTACAACATTATTT+TGG 0.086652 4_1:-42909081 Msa0548660:three_prime_UTR
TTGCTTATTAATAGAGTTTC+TGG 0.138793 4_1:-42908933 None:intergenic
ATCCATTTGCATTCCCTTCT+TGG 0.153405 4_1:-42911676 Msa0548660:CDS
TGACAGCAAAAGTTTCTATT+TGG 0.177929 4_1:-42909764 Msa0548660:CDS
CCTATATTATGGTCTTTGTT+AGG 0.192944 4_1:+42909973 None:intergenic
GGTATAGAAGTTCATATCTT+AGG 0.250716 4_1:-42909039 Msa0548660:three_prime_UTR
AATACCATTATGTCTGGTTC+TGG 0.257266 4_1:-42909841 Msa0548660:CDS
ACAATGAAATCAAGAACTTT+TGG 0.281358 4_1:-42910074 Msa0548660:CDS
GGGAGTGTAAATATTATTAA+TGG 0.283826 4_1:-42909730 Msa0548660:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.287022 4_1:+42910087 None:intergenic
GAAAACACTTTGTTGAATCT+TGG 0.294588 4_1:+42909378 None:intergenic
TGCATTCCCTTCTTGGAAAC+AGG 0.336319 4_1:-42911669 Msa0548660:intron
TTATAAAACCTCCTATATTA+TGG 0.343826 4_1:+42909962 None:intergenic
GAGATTTATCTGTTGGAGAT+TGG 0.356328 4_1:-42909465 Msa0548660:CDS
CAAATTGCGGCGCGCTTACC+TGG 0.371371 4_1:-42910105 Msa0548660:CDS
CTATATTATGGTCTTTGTTA+GGG 0.372088 4_1:+42909974 None:intergenic
ATCTGTTGGAGATTGGGATT+TGG 0.391051 4_1:-42909458 Msa0548660:CDS
AGATTTATCTGTTGGAGATT+GGG 0.394773 4_1:-42909464 Msa0548660:CDS
AATATTATTAATGGTGTAGA+AGG 0.397124 4_1:-42909721 Msa0548660:CDS
TAAATAGTGGACAAGGTTGT+TGG 0.399936 4_1:-42911822 Msa0548660:CDS
ATACCATTATGTCTGGTTCT+GGG 0.402889 4_1:-42909840 Msa0548660:CDS
GAGGTGGAGAATTTATTTCA+TGG 0.406594 4_1:-42909487 Msa0548660:CDS
CACAGAAAAGTTATTATATG+TGG 0.414549 4_1:-42908989 Msa0548660:three_prime_UTR
GAAGATTCATCGCTTGCGTT+TGG 0.416241 4_1:+42910003 None:intergenic
TTTGGGATGGTTTATTTGGA+GGG 0.422493 4_1:-42909063 Msa0548660:three_prime_UTR
ATACAGTACAGGGATTAATA+AGG 0.423386 4_1:-42909308 Msa0548660:three_prime_UTR
CCTAACAAAGACCATAATAT+AGG 0.430327 4_1:-42909973 Msa0548660:CDS
ATTATGTCTGGTTCTGGGTG+TGG 0.433859 4_1:-42909835 Msa0548660:CDS
TTTCATGGAGATTTATCTGT+TGG 0.445436 4_1:-42909472 Msa0548660:CDS
ATAAGCTTCTCATCTTCCTC+TGG 0.451621 4_1:+42911856 None:intergenic
ACACCCAGAACCAGACATAA+TGG 0.452955 4_1:+42909837 None:intergenic
AACAACTCTAAGCTTAGAAA+AGG 0.456430 4_1:-42911889 Msa0548660:CDS
GGGATGGTTTATTTGGAGGG+AGG 0.458406 4_1:-42909060 Msa0548660:three_prime_UTR
AGGAAGCCAGAGATTGCATC+TGG 0.463580 4_1:-42911916 Msa0548660:CDS
AGTTACACATTAACTTTATG+TGG 0.475439 4_1:-42909110 Msa0548660:three_prime_UTR
TTCCAAGAAGGGAATGCAAA+TGG 0.481023 4_1:+42911674 None:intergenic
TGGTGTAGAAGGAGATGAGA+TGG 0.483693 4_1:-42909710 Msa0548660:CDS
ATGAACTACATGTTAAATAG+TGG 0.487097 4_1:-42911835 Msa0548660:CDS
CCCAAAATAATGTTGTAACA+TGG 0.501705 4_1:+42909080 None:intergenic
TTCTTCAATAATAGTACTAC+AGG 0.501923 4_1:-42909811 Msa0548660:CDS
CCAAAATAATGTTGTAACAT+GGG 0.508155 4_1:+42909081 None:intergenic
GAAAAGTTATTATATGTGGT+TGG 0.509703 4_1:-42908985 Msa0548660:three_prime_UTR
AGTGATGTTGCTAGAAATGC+TGG 0.514684 4_1:-42911799 Msa0548660:CDS
CAAAATAATGTTGTAACATG+GGG 0.530136 4_1:+42909082 None:intergenic
AATGCACCACGTTTAAGATC+AGG 0.532050 4_1:+42911724 None:intergenic
AATGCATGCAATGGAGAAGA+TGG 0.536091 4_1:-42909610 Msa0548660:CDS
TCTCTACATCAAGGTGAGGA+AGG 0.540789 4_1:-42911956 None:intergenic
TCAAAGATGGTCTCAAATTG+CGG 0.554550 4_1:-42910118 Msa0548660:intron
AAGTGGACCTGTTTCCAAGA+AGG 0.565199 4_1:+42911662 None:intergenic
CTCTACATCAAGGTGAGGAA+GGG 0.569671 4_1:-42911955 None:intergenic
AGTGGACCTGTTTCCAAGAA+GGG 0.574708 4_1:+42911663 None:intergenic
AACAAAGACCATAATATAGG+AGG 0.580798 4_1:-42909970 Msa0548660:CDS
GGAGATGAAGTATTGAACAT+AGG 0.583399 4_1:+42909895 None:intergenic
CTAAGCTTAGAAAAGGATTG+TGG 0.585725 4_1:-42911882 Msa0548660:CDS
ATGATATGTTCTTCTTCCTG+TGG 0.588188 4_1:+42911697 None:intergenic
TAGAGCTGATCATGATGAGG+TGG 0.613651 4_1:-42909503 Msa0548660:CDS
AATGCTGGATTGCAAAGATG+TGG 0.617901 4_1:-42911784 Msa0548660:CDS
TAAGATGGATCAATTACTTG+AGG 0.619133 4_1:-42911747 Msa0548660:CDS
ACGTGGTGCATTCTCACCAC+AGG 0.629748 4_1:-42911713 Msa0548660:CDS
AAAAGGATTGTGGTCACCAG+AGG 0.635321 4_1:-42911872 Msa0548660:CDS
AAAATGGAGAATGCATGCAA+TGG 0.638345 4_1:-42909619 Msa0548660:CDS
TTAGTATTAACACTCTCTAG+AGG 0.641496 4_1:+42909670 None:intergenic
AGTACAGGGATTAATAAGGT+AGG 0.643047 4_1:-42909304 Msa0548660:three_prime_UTR
GTATTAACACTCTCTAGAGG+AGG 0.651371 4_1:+42909673 None:intergenic
AAAATAATGTTGTAACATGG+GGG 0.657543 4_1:+42909083 None:intergenic
TACATGTTAAATAGTGGACA+AGG 0.672810 4_1:-42911829 Msa0548660:CDS
AAATAATGTTGTAACATGGG+GGG 0.672902 4_1:+42909084 None:intergenic
TTGAGGCCTGATCTTAAACG+TGG 0.683943 4_1:-42911730 Msa0548660:CDS
AGGGATTCAATAGTACAATG+AGG 0.688594 4_1:-42911936 Msa0548660:exon
AAATAGAGCTGATCATGATG+AGG 0.716489 4_1:-42909506 Msa0548660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAATAATAAAAAAA+AGG - chr4_1:42909540-42909559 Msa0548660:CDS 0.0%
!!! TTCATCATTTTATTAAAAAT+TGG + chr4_1:42909521-42909540 None:intergenic 10.0%
!! TAAAAAAAAATCTAAATCTT+TGG + chr4_1:42909898-42909917 None:intergenic 10.0%
!! TTCTCAAATTAAGATAAATT+TGG + chr4_1:42909335-42909354 None:intergenic 15.0%
!! TTCAATATAATAAATGATTC+AGG + chr4_1:42909809-42909828 None:intergenic 15.0%
!!! GATAAATAAATTGATGATCT+AGG + chr4_1:42909251-42909270 None:intergenic 20.0%
!! ATATTATACATACTCATGTT+TGG + chr4_1:42909461-42909480 None:intergenic 20.0%
!! ATGAGTATGTATAATATACA+TGG - chr4_1:42909464-42909483 Msa0548660:CDS 20.0%
!!! CATCTTTAAAACATTTTTTG+AGG + chr4_1:42909491-42909510 None:intergenic 20.0%
!!! CTCAAAAAATGTTTTAAAGA+TGG - chr4_1:42909489-42909508 Msa0548660:CDS 20.0%
!!! TACATAGCTATTTTTTTTCA+CGG + chr4_1:42909705-42909724 None:intergenic 20.0%
!! TACAATTGAAAACAACATAT+AGG - chr4_1:42910338-42910357 Msa0548660:intron 20.0%
!! TTTACTGTCTATTTCATAAA+TGG - chr4_1:42910537-42910556 Msa0548660:intron 20.0%
!! TTATAAAACCTCCTATATTA+TGG + chr4_1:42910918-42910937 None:intergenic 20.0%
!! TTCTATTTGGAAAAAATGTT+TGG - chr4_1:42911126-42911145 Msa0548660:intron 20.0%
!! TCTATTTGGAAAAAATGTTT+GGG - chr4_1:42911127-42911146 Msa0548660:intron 20.0%
!! AATATTATTAATGGTGTAGA+AGG - chr4_1:42911156-42911175 Msa0548660:intron 20.0%
!!! ATATAAAGGAGTGTAAAAAA+TGG + chr4_1:42911533-42911552 None:intergenic 20.0%
!! CAGCAAAAATACAAATATAA+AGG + chr4_1:42911547-42911566 None:intergenic 20.0%
! ATGAACTACATGTTAAATAG+TGG - chr4_1:42909042-42909061 Msa0548660:three_prime_UTR 25.0%
! ACCAATTTGATTCCATATAT+TGG - chr4_1:42909279-42909298 Msa0548660:three_prime_UTR 25.0%
! TAAATTAAGGAGCCAATATA+TGG + chr4_1:42909294-42909313 None:intergenic 25.0%
!!! GAAGATAACCATTTTTACAT+TGG - chr4_1:42909352-42909371 Msa0548660:three_prime_UTR 25.0%
!!! AAAATGTTTTAAAGATGGAC+TGG - chr4_1:42909494-42909513 Msa0548660:CDS 25.0%
!! ATCTCTAAAAAATAGTCTGA+AGG + chr4_1:42909614-42909633 None:intergenic 25.0%
! AGATAACTTGAGAGAAAAAA+TGG + chr4_1:42909652-42909671 None:intergenic 25.0%
!!! ACATAGCTATTTTTTTTCAC+GGG + chr4_1:42909704-42909723 None:intergenic 25.0%
! ACACACAACAATATAGTATA+TGG - chr4_1:42909743-42909762 Msa0548660:CDS 25.0%
! AGACAAACACATAAATGAAA+AGG - chr4_1:42909942-42909961 Msa0548660:CDS 25.0%
! ACAACAAACTTAAATCACTT+GGG + chr4_1:42910093-42910112 None:intergenic 25.0%
! AACAACAAACTTAAATCACT+TGG + chr4_1:42910094-42910113 None:intergenic 25.0%
! TAACTAAATAGTATTACGAG+AGG - chr4_1:42910586-42910605 Msa0548660:intron 25.0%
!! ACAATGAAATCAAGAACTTT+TGG - chr4_1:42910803-42910822 Msa0548660:intron 25.0%
! CTATATTATGGTCTTTGTTA+GGG + chr4_1:42910906-42910925 None:intergenic 25.0%
! TTCTTCAATAATAGTACTAC+AGG - chr4_1:42911066-42911085 Msa0548660:intron 25.0%
!! GGGAGTGTAAATATTATTAA+TGG - chr4_1:42911147-42911166 Msa0548660:intron 25.0%
! TTGTGAACATAGTGTAAAAA+TGG - chr4_1:42911242-42911261 Msa0548660:intron 25.0%
! CAGTTTGAAAAATCAAGAAA+TGG + chr4_1:42911474-42911493 None:intergenic 25.0%
! AGTTACACATTAACTTTATG+TGG - chr4_1:42911767-42911786 Msa0548660:CDS 25.0%
! AAAATAATGTTGTAACATGG+GGG + chr4_1:42911797-42911816 None:intergenic 25.0%
! CAAAATAATGTTGTAACATG+GGG + chr4_1:42911798-42911817 None:intergenic 25.0%
! CCAAAATAATGTTGTAACAT+GGG + chr4_1:42911799-42911818 None:intergenic 25.0%
!! CCATGTTACAACATTATTTT+GGG - chr4_1:42911797-42911816 Msa0548660:CDS 25.0%
!!! TTATTTTGGGATGGTTTATT+TGG - chr4_1:42911810-42911829 Msa0548660:CDS 25.0%
! CACAGAAAAGTTATTATATG+TGG - chr4_1:42911888-42911907 Msa0548660:CDS 25.0%
! GAAAAGTTATTATATGTGGT+TGG - chr4_1:42911892-42911911 Msa0548660:CDS 25.0%
AACAACTCTAAGCTTAGAAA+AGG - chr4_1:42908988-42909007 Msa0548660:three_prime_UTR 30.0%
!! TACATGTTAAATAGTGGACA+AGG - chr4_1:42909048-42909067 Msa0548660:three_prime_UTR 30.0%
AAAGATGTGGAAAAAGTTGT+AGG - chr4_1:42909106-42909125 Msa0548660:three_prime_UTR 30.0%
TAAGATGGATCAATTACTTG+AGG - chr4_1:42909130-42909149 Msa0548660:three_prime_UTR 30.0%
GCCAATATATGGAATCAAAT+TGG + chr4_1:42909283-42909302 None:intergenic 30.0%
TTAAGGAGCCAATGTAAAAA+TGG + chr4_1:42909363-42909382 None:intergenic 30.0%
CTCCTTAATTCACTATTTAG+TGG - chr4_1:42909375-42909394 Msa0548660:three_prime_UTR 30.0%
GTCCACTAAATAGTGAATTA+AGG + chr4_1:42909380-42909399 None:intergenic 30.0%
TAAAATTCACCTCTTGATGA+GGG + chr4_1:42909677-42909696 None:intergenic 30.0%
ATAAAATTCACCTCTTGATG+AGG + chr4_1:42909678-42909697 None:intergenic 30.0%
CAAACACATAAATGAAAAGG+AGG - chr4_1:42909945-42909964 Msa0548660:CDS 30.0%
AATTAGTTGTGTCGTATCTT+AGG + chr4_1:42910221-42910240 None:intergenic 30.0%
! TTGTACTTTTGTCTTCTACA+AGG + chr4_1:42910323-42910342 None:intergenic 30.0%
ACTGTGATTTCGTCTTTATT+TGG - chr4_1:42910362-42910381 Msa0548660:intron 30.0%
TTTGAACAATACACGTAGTA+TGG + chr4_1:42910407-42910426 None:intergenic 30.0%
ATAGTATTACGAGAGGAAAT+AGG - chr4_1:42910593-42910612 Msa0548660:intron 30.0%
! TTGTGCTTCATTTTCAAAGA+TGG - chr4_1:42910746-42910765 Msa0548660:intron 30.0%
CCTATATTATGGTCTTTGTT+AGG + chr4_1:42910907-42910926 None:intergenic 30.0%
CCTAACAAAGACCATAATAT+AGG - chr4_1:42910904-42910923 Msa0548660:intron 30.0%
AACAAAGACCATAATATAGG+AGG - chr4_1:42910907-42910926 Msa0548660:intron 30.0%
! AAAACTGTGTTTTGCATTGT+TGG + chr4_1:42911015-42911034 None:intergenic 30.0%
! GTTTTCAATACCATTATGTC+TGG - chr4_1:42911030-42911049 Msa0548660:intron 30.0%
TGACAGCAAAAGTTTCTATT+TGG - chr4_1:42911113-42911132 Msa0548660:intron 30.0%
TTAGTATTAACACTCTCTAG+AGG + chr4_1:42911210-42911229 None:intergenic 30.0%
TTTCATGGAGATTTATCTGT+TGG - chr4_1:42911405-42911424 Msa0548660:intron 30.0%
AGATTTATCTGTTGGAGATT+GGG - chr4_1:42911413-42911432 Msa0548660:intron 30.0%
GAAAACACTTTGTTGAATCT+TGG + chr4_1:42911502-42911521 None:intergenic 30.0%
!!! TTTTTGCTGTTATACAGTAC+AGG - chr4_1:42911558-42911577 Msa0548660:intron 30.0%
!!! TTTTGCTGTTATACAGTACA+GGG - chr4_1:42911559-42911578 Msa0548660:intron 30.0%
ATACAGTACAGGGATTAATA+AGG - chr4_1:42911569-42911588 Msa0548660:intron 30.0%
! TAACTACAGTAGTTTTCTGT+GGG + chr4_1:42911675-42911694 None:intergenic 30.0%
! TTAACTACAGTAGTTTTCTG+TGG + chr4_1:42911676-42911695 None:intergenic 30.0%
AAATAATGTTGTAACATGGG+GGG + chr4_1:42911796-42911815 None:intergenic 30.0%
! CCCATGTTACAACATTATTT+TGG - chr4_1:42911796-42911815 Msa0548660:CDS 30.0%
CCCAAAATAATGTTGTAACA+TGG + chr4_1:42911800-42911819 None:intergenic 30.0%
!!! GTTACAACATTATTTTGGGA+TGG - chr4_1:42911801-42911820 Msa0548660:CDS 30.0%
GGTATAGAAGTTCATATCTT+AGG - chr4_1:42911838-42911857 Msa0548660:CDS 30.0%
! CATATCTTAGGTTTTCAGAT+TGG - chr4_1:42911850-42911869 Msa0548660:CDS 30.0%
AGGGATTCAATAGTACAATG+AGG - chr4_1:42908941-42908960 Msa0548660:three_prime_UTR 35.0%
!!! TTTTTTCCAGATGCAATCTC+TGG + chr4_1:42908970-42908989 None:intergenic 35.0%
CTAAGCTTAGAAAAGGATTG+TGG - chr4_1:42908995-42909014 Msa0548660:three_prime_UTR 35.0%
!! TAAATAGTGGACAAGGTTGT+TGG - chr4_1:42909055-42909074 Msa0548660:three_prime_UTR 35.0%
GAAAAAGTTGTAGGCTAAGA+TGG - chr4_1:42909115-42909134 Msa0548660:three_prime_UTR 35.0%
ATGATATGTTCTTCTTCCTG+TGG + chr4_1:42909183-42909202 None:intergenic 35.0%
ATCTAGGTAGAAAAGTGAAG+TGG + chr4_1:42909235-42909254 None:intergenic 35.0%
ATCAGCTTATGATGTGTCTA+TGG + chr4_1:42909855-42909874 None:intergenic 35.0%
AAATTGTCTGCCTCTCTAAA+TGG + chr4_1:42910154-42910173 None:intergenic 35.0%
! GAGGCAGACAATTTTGTAAA+AGG - chr4_1:42910160-42910179 Msa0548660:intron 35.0%
TCAAAGATGGTCTCAAATTG+CGG - chr4_1:42910759-42910778 Msa0548660:intron 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr4_1:42910793-42910812 None:intergenic 35.0%
!! GGAGATGAAGTATTGAACAT+AGG + chr4_1:42910985-42911004 None:intergenic 35.0%
! AATACCATTATGTCTGGTTC+TGG - chr4_1:42911036-42911055 Msa0548660:intron 35.0%
!! ATACCATTATGTCTGGTTCT+GGG - chr4_1:42911037-42911056 Msa0548660:intron 35.0%
AAAATGGAGAATGCATGCAA+TGG - chr4_1:42911258-42911277 Msa0548660:intron 35.0%
AAATAGAGCTGATCATGATG+AGG - chr4_1:42911371-42911390 Msa0548660:intron 35.0%
GAGGTGGAGAATTTATTTCA+TGG - chr4_1:42911390-42911409 Msa0548660:intron 35.0%
GAGATTTATCTGTTGGAGAT+TGG - chr4_1:42911412-42911431 Msa0548660:intron 35.0%
AGTACAGGGATTAATAAGGT+AGG - chr4_1:42911573-42911592 Msa0548660:intron 35.0%
!!! TTTTGGGATGGTTTATTTGG+AGG - chr4_1:42911813-42911832 Msa0548660:CDS 35.0%
! TTTGGGATGGTTTATTTGGA+GGG - chr4_1:42911814-42911833 Msa0548660:CDS 35.0%
ATAAGCTTCTCATCTTCCTC+TGG + chr4_1:42909024-42909043 None:intergenic 40.0%
AGTGATGTTGCTAGAAATGC+TGG - chr4_1:42909078-42909097 Msa0548660:three_prime_UTR 40.0%
AATGCTGGATTGCAAAGATG+TGG - chr4_1:42909093-42909112 Msa0548660:three_prime_UTR 40.0%
! AATGCACCACGTTTAAGATC+AGG + chr4_1:42909156-42909175 None:intergenic 40.0%
ATCCATTTGCATTCCCTTCT+TGG - chr4_1:42909201-42909220 Msa0548660:three_prime_UTR 40.0%
TTCCAAGAAGGGAATGCAAA+TGG + chr4_1:42909206-42909225 None:intergenic 40.0%
AGACACATCATAAGCTGATC+AGG - chr4_1:42909856-42909875 Msa0548660:CDS 40.0%
AACAGTGCTTCCATTTAGAG+AGG - chr4_1:42910141-42910160 Msa0548660:intron 40.0%
! TTGTGTCGTATCTTAGGTTG+AGG + chr4_1:42910215-42910234 None:intergenic 40.0%
ACGAGAGGAAATAGGTCTAA+AGG - chr4_1:42910601-42910620 Msa0548660:intron 40.0%
!!! TTTTGCATTGTTGGTGGTGA+TGG + chr4_1:42911006-42911025 None:intergenic 40.0%
! ACTGTGTTTTGCATTGTTGG+TGG + chr4_1:42911012-42911031 None:intergenic 40.0%
! GTATTAACACTCTCTAGAGG+AGG + chr4_1:42911207-42911226 None:intergenic 40.0%
AATGCATGCAATGGAGAAGA+TGG - chr4_1:42911267-42911286 Msa0548660:intron 40.0%
ATCTGTTGGAGATTGGGATT+TGG - chr4_1:42911419-42911438 Msa0548660:intron 40.0%
AAAAGGATTGTGGTCACCAG+AGG - chr4_1:42909005-42909024 Msa0548660:three_prime_UTR 45.0%
TTGAGGCCTGATCTTAAACG+TGG - chr4_1:42909147-42909166 Msa0548660:three_prime_UTR 45.0%
TGCATTCCCTTCTTGGAAAC+AGG - chr4_1:42909208-42909227 Msa0548660:three_prime_UTR 45.0%
AGTGGACCTGTTTCCAAGAA+GGG + chr4_1:42909217-42909236 None:intergenic 45.0%
AAGTGGACCTGTTTCCAAGA+AGG + chr4_1:42909218-42909237 None:intergenic 45.0%
GTTATCTCACCCTCATCAAG+AGG - chr4_1:42909665-42909684 Msa0548660:CDS 45.0%
!! TGTCGTATCTTAGGTTGAGG+AGG + chr4_1:42910212-42910231 None:intergenic 45.0%
ATAGGTCTAAAGGCCTCTAG+CGG - chr4_1:42910611-42910630 Msa0548660:intron 45.0%
GAAGATTCATCGCTTGCGTT+TGG + chr4_1:42910877-42910896 None:intergenic 45.0%
ACACCCAGAACCAGACATAA+TGG + chr4_1:42911043-42911062 None:intergenic 45.0%
!! ATTATGTCTGGTTCTGGGTG+TGG - chr4_1:42911042-42911061 Msa0548660:intron 45.0%
TGGTGTAGAAGGAGATGAGA+TGG - chr4_1:42911167-42911186 Msa0548660:intron 45.0%
TAGAGCTGATCATGATGAGG+TGG - chr4_1:42911374-42911393 Msa0548660:intron 45.0%
!! ATAATAAGATAAATAAATTA+AGG + chr4_1:42909307-42909326 None:intergenic 5.0%
AGGAAGCCAGAGATTGCATC+TGG - chr4_1:42908961-42908980 Msa0548660:three_prime_UTR 50.0%
! ACAACAAACTGTGCCGCTAG+AGG + chr4_1:42910627-42910646 None:intergenic 50.0%
GGGATGGTTTATTTGGAGGG+AGG - chr4_1:42911817-42911836 Msa0548660:CDS 50.0%
ACGTGGTGCATTCTCACCAC+AGG - chr4_1:42909164-42909183 Msa0548660:three_prime_UTR 55.0%
CAAATTGCGGCGCGCTTACC+TGG - chr4_1:42910772-42910791 Msa0548660:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42908934 42911965 42908934 ID=Msa0548660;Name=Msa0548660
chr4_1 mRNA 42908934 42911965 42908934 ID=Msa0548660-mRNA-1;Parent=Msa0548660;Name=Msa0548660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=24|1|1|1|1|1|2|471|333
chr4_1 exon 42908934 42910134 42908934 ID=Msa0548660-mRNA-1:exon:11113;Parent=Msa0548660-mRNA-1
chr4_1 exon 42911670 42911965 42911670 ID=Msa0548660-mRNA-1:exon:11112;Parent=Msa0548660-mRNA-1
chr4_1 five_prime_UTR 42911942 42911965 42911942 ID=Msa0548660-mRNA-1:five_prime_utr;Parent=Msa0548660-mRNA-1
chr4_1 CDS 42911670 42911941 42911670 ID=Msa0548660-mRNA-1:cds;Parent=Msa0548660-mRNA-1
chr4_1 CDS 42909405 42910134 42909405 ID=Msa0548660-mRNA-1:cds;Parent=Msa0548660-mRNA-1
chr4_1 three_prime_UTR 42908934 42909404 42908934 ID=Msa0548660-mRNA-1:three_prime_utr;Parent=Msa0548660-mRNA-1
Gene Sequence

>Msa0548660

ATGAGGAAGCCAGAGATTGCATCTGGAAAAAACAACTCTAAGCTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTACATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCGCGCTTACCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCACCAAACGCAAGCGATGAATCTTCGTACGACCCTAACAAAGACCATAATATAGGAGGTTTTATAACTTCTTCAACACAAGATCAACAACATATTGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAATACCATTATGTCTGGTTCTGGGTGTGGATTCTTCAATAATAGTACTACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAAATGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGAGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATACTAATAGTACTATTACTTGTGAACATAGTGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAATAGAAGTGAAAATAGAGCTGATCATGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTTGGAGATTGGGATTTGGAAGATTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA
Protein sequence

>Msa0548660

MRKPEIASGKNNSKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNIGGFITSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKMFGSVNIINGVEGDEMEIYNVPPLESVNTNSTITCEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSNRSENRADHDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN*