AlfalfaGEDB | Msa0609430

M. sativa cultivar zhongmu-4 / Msa0609430

KEGG: K10405
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609430	XP_024636838.1	98.239	795	14	0	1	795	1	795	0.0	1607

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609430	sp\|P46875\|KN14N_ARATH	64.163	759	251	4	42	793	8	752	0.0	993

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa0609430	0.808864	2.511317e-50	-8.615850e-47
Msa0017510	Msa0609430	0.811195	7.903974e-51	-8.615850e-47
Msa0025330	Msa0609430	0.802964	4.369936e-49	-8.615850e-47
Msa0028640	Msa0609430	0.805681	1.187044e-49	-8.615850e-47
Msa0036960	Msa0609430	0.800651	1.304224e-48	-8.615850e-47
Msa0045490	Msa0609430	0.800951	1.132401e-48	-8.615850e-47
Msa0072370	Msa0609430	0.823195	1.578146e-53	-8.615850e-47
Msa0078650	Msa0609430	0.800646	1.307283e-48	-8.615850e-47
Msa0089360	Msa0609430	0.801297	9.621712e-49	-8.615850e-47
Msa0095540	Msa0609430	0.812863	3.421936e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609430	MtrunA17_Chr4g0042061	97.987	795	14	1	1	795	1	793	0.0	1597
Msa0609430	MtrunA17_Chr2g0319271	81.102	762	141	3	36	795	1	761	0.0	1276
Msa0609430	MtrunA17_Chr2g0280421	56.489	809	314	8	1	794	1	786	0.0	857
Msa0609430	MtrunA17_Chr4g0049011	58.348	581	209	7	217	784	72	632	0.0	638
Msa0609430	MtrunA17_Chr1g0191851	45.974	385	183	7	407	784	115	481	6.23e-96	316
Msa0609430	MtrunA17_Chr2g0312631	45.600	375	189	5	408	782	358	717	4.52e-95	319
Msa0609430	MtrunA17_Chr7g0272871	45.407	381	183	8	411	784	99	461	1.90e-92	305
Msa0609430	MtrunA17_Chr5g0411971	39.655	464	241	7	342	784	286	731	6.39e-91	308
Msa0609430	MtrunA17_Chr7g0271961	41.648	449	207	10	352	780	316	729	1.35e-89	303
Msa0609430	MtrunA17_Chr5g0421521	43.636	385	199	5	400	784	340	706	1.26e-88	300

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609430	AT5G54670.1	64.163	759	251	4	42	793	8	752	0.0	993
Msa0609430	AT5G54670.2	64.163	759	251	4	42	793	8	752	0.0	993
Msa0609430	AT4G27180.1	63.026	760	249	5	42	793	8	743	0.0	961
Msa0609430	AT4G27180.2	63.026	760	249	5	42	793	8	743	0.0	961
Msa0609430	AT4G21270.1	61.015	808	285	9	1	794	1	792	0.0	941
Msa0609430	AT4G05190.1	59.876	805	296	7	1	794	1	789	0.0	920
Msa0609430	AT5G54670.3	64.245	702	230	4	99	793	5	692	0.0	919
Msa0609430	AT4G05190.2	61.719	768	273	6	38	794	19	776	0.0	916
Msa0609430	AT1G72250.1	41.270	504	251	12	301	782	345	825	2.71e-98	331
Msa0609430	AT1G72250.2	45.647	425	205	9	360	782	434	834	3.59e-98	331

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Find 157 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGTACCTCTGAAG+GGG	0.638735	4_2:+56769507	None:intergenic
AAAATTACACAATACCATTT+TGG	0.194447	4_2:-56766870	Msa0609430:intron
AAACAGTCTCAACAACCTCA+AGG	0.655111	4_2:-56766091	Msa0609430:CDS
AAAGACGCTCGCTACCAGCA+AGG	0.659107	4_2:+56765238	None:intergenic
AAAGGAAGAAGCAGAGAAGT+CGG	0.562965	4_2:-56768355	Msa0609430:intron
AACAAATTGAACTATTAGAA+TGG	0.449805	4_2:+56764522	None:intergenic
AAGATCATCCTTCTGCTTTG+TGG	0.340847	4_2:+56767507	None:intergenic
AAGCAAGGCTTGATATTGAG+AGG	0.606395	4_2:-56768197	Msa0609430:CDS
AAGCAGAATCCCTCAACTGG+AGG	0.647188	4_2:+56769588	None:intergenic
AAGTGCTCTTGATGGTTATA+AGG	0.346220	4_2:-56766430	Msa0609430:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTTACCAAAATTCAAAAC+CGG	-	chr4_2:56764621-56764640	Msa0609430:three_prime_UTR	30.0%
CATGTAGTATTCTTGTAAAC+TGG	-	chr4_2:56765204-56765223	Msa0609430:CDS	30.0%
GGAAAAGTTAAAGAATTCAC+TGG	-	chr4_2:56765582-56765601	Msa0609430:intron	30.0%
GAAGAAGAAAAAAAGTGGAA+AGG	+	chr4_2:56766111-56766130	None:intergenic	30.0%
GATTGGAAGAAGAAAAAAAG+TGG	+	chr4_2:56766116-56766135	None:intergenic	30.0%
AGTTTAATTCCTGCAATGAT+TGG	+	chr4_2:56766133-56766152	None:intergenic	30.0%
ACAAGTTTACAACAGTACAA+TGG	-	chr4_2:56766235-56766254	Msa0609430:intron	30.0%
ACTCATTCTTTATCTTCTTC+TGG	-	chr4_2:56766437-56766456	Msa0609430:CDS	30.0%
CTCATTCTTTATCTTCTTCT+GGG	-	chr4_2:56766438-56766457	Msa0609430:CDS	30.0%
GAAGACTATTAAAAGAACCA+AGG	+	chr4_2:56766644-56766663	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	56764455	56769749	56764455	ID=Msa0609430;Name=Msa0609430
chr4_2	mRNA	56764455	56769749	56764455	ID=Msa0609430-mRNA-1;Parent=Msa0609430;Name=Msa0609430-mRNA-1;_AED=0.14;_eAED=0.14;_QI=59\|1\|1\|1\|0.88\|0.83\|18\|245\|795
chr4_2	exon	56764455	56764879	56764455	ID=Msa0609430-mRNA-1:exon:14712;Parent=Msa0609430-mRNA-1
chr4_2	exon	56765003	56765107	56765003	ID=Msa0609430-mRNA-1:exon:14711;Parent=Msa0609430-mRNA-1
chr4_2	exon	56765197	56765301	56765197	ID=Msa0609430-mRNA-1:exon:14710;Parent=Msa0609430-mRNA-1
chr4_2	exon	56765428	56765509	56765428	ID=Msa0609430-mRNA-1:exon:14709;Parent=Msa0609430-mRNA-1
chr4_2	exon	56765751	56765968	56765751	ID=Msa0609430-mRNA-1:exon:14708;Parent=Msa0609430-mRNA-1
chr4_2	exon	56766072	56766233	56766072	ID=Msa0609430-mRNA-1:exon:14707;Parent=Msa0609430-mRNA-1
chr4_2	exon	56766431	56766540	56766431	ID=Msa0609430-mRNA-1:exon:14706;Parent=Msa0609430-mRNA-1
chr4_2	exon	56766655	56766793	56766655	ID=Msa0609430-mRNA-1:exon:14705;Parent=Msa0609430-mRNA-1
chr4_2	exon	56766871	56767017	56766871	ID=Msa0609430-mRNA-1:exon:14704;Parent=Msa0609430-mRNA-1
chr4_2	exon	56767177	56767251	56767177	ID=Msa0609430-mRNA-1:exon:14703;Parent=Msa0609430-mRNA-1
chr4_2	exon	56767336	56767545	56767336	ID=Msa0609430-mRNA-1:exon:14702;Parent=Msa0609430-mRNA-1
chr4_2	exon	56767832	56768014	56767832	ID=Msa0609430-mRNA-1:exon:14701;Parent=Msa0609430-mRNA-1
chr4_2	exon	56768131	56768250	56768131	ID=Msa0609430-mRNA-1:exon:14700;Parent=Msa0609430-mRNA-1
chr4_2	exon	56768356	56768465	56768356	ID=Msa0609430-mRNA-1:exon:14699;Parent=Msa0609430-mRNA-1
chr4_2	exon	56768570	56768714	56768570	ID=Msa0609430-mRNA-1:exon:14698;Parent=Msa0609430-mRNA-1
chr4_2	exon	56769155	56769385	56769155	ID=Msa0609430-mRNA-1:exon:14697;Parent=Msa0609430-mRNA-1
chr4_2	exon	56769519	56769607	56769519	ID=Msa0609430-mRNA-1:exon:14696;Parent=Msa0609430-mRNA-1
chr4_2	exon	56769714	56769749	56769714	ID=Msa0609430-mRNA-1:exon:14695;Parent=Msa0609430-mRNA-1
chr4_2	five_prime_UTR	56769714	56769749	56769714	ID=Msa0609430-mRNA-1:five_prime_utr;Parent=Msa0609430-mRNA-1
chr4_2	five_prime_UTR	56769585	56769607	56769585	ID=Msa0609430-mRNA-1:five_prime_utr;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56769519	56769584	56769519	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56769155	56769385	56769155	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56768570	56768714	56768570	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56768356	56768465	56768356	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56768131	56768250	56768131	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56767832	56768014	56767832	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56767336	56767545	56767336	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56767177	56767251	56767177	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56766871	56767017	56766871	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56766655	56766793	56766655	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56766431	56766540	56766431	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56766072	56766233	56766072	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56765751	56765968	56765751	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56765428	56765509	56765428	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56765197	56765301	56765197	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56765003	56765107	56765003	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	CDS	56764700	56764879	56764700	ID=Msa0609430-mRNA-1:cds;Parent=Msa0609430-mRNA-1
chr4_2	three_prime_UTR	56764455	56764699	56764455	ID=Msa0609430-mRNA-1:three_prime_utr;Parent=Msa0609430-mRNA-1

Gene Sequence

>Msa0609430

ATGGTTACCAAAATTCAAAACCGGCCTCCATTATCACTCACACACACATCTCCAACCCCTTCAGAGTTTCAGAATTTTGTGGGAGATAAGCACCTGCTAGAAACAATGGTGGAGACTCCGATTAATGGAAGAATAAGGCAAGCTTTAACAGTTGTGAATGGCGGGCACGATGTTGGCCTAAGTAGTGCTCCTCCGAGCAATGCTGGATCGGATTATGGTGTAATAGAGTTTACAAGAGAAGATGTAGAAGCATTGCTAAATGAAAAAGCCAAAAAGAAAGAAAGGTTTAATTATAAGGAAAGATGTGAAAATATGGTGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGACGAGCTACTCAATAGATCAGGAAAAGTTAAAGAATTCACTGGAAATGACCAAGCAAAAAAGTATAGAAATCGAGATGCTGCTCAAAATCAAGGAAGAGGAGTTGAATTTAATTATTATAGAAATGAGAAAGAATTGCACTTCTTTACAAGAGAAATTGATAAAGGAAGAAGCAGAGAAGTCGGCTGCAGTGGAATCTCTTTCTAAAGAGAGAGAAGCAAGGCTTGATATTGAGAGGTCACATACTACTCTTTCCGAGGACCTCGGAAAAGCTGAACGAGAGATTCAAAGTGCAAATCAGAAGATATCCTCGCTCAATGAAATGTATAAGCGGTTACAAGAATACATAACAAGTTTACAACAGTACAATGGAAAACTTCATACTGAGCTTTCATCAGTTGAAGATGAACTCAAACGTGTAGAGAAAGAAAAGGCTACTGCAGAGGAGAACATCGCCATGCTAAAGGGTCAACTTACTTTATCCATTTCTTCTCAAGAAGAGGCCACAAAGCAGAAGGATGATCTTGCTAGTGAAGTTTATTCTATGAGAGGAGAGTTGAAACAAGTAAGAGATGATAGAGACCGTCAATTATCTCAAGCGCAAAGTTTAAATGCTGAGTTCATGAAACTAAAAGAATCTAGGGAGAACTCTTGCATTGAATTGGACAGCTTGACATTAAAAGCAAATGAACTGGAGGAAAAAAGTTCATTGAAAGAGAATCAAATAAAGGCATTGCAAGAAAAGTTAGCAGCCGCAGAGAAGAAATTGCAGGTGACTGATGTATCTGTATTCGAGACAAGGACAGAATTTGAAGGGCAACAAAAACTTGTTGACGAGTTGCAAAAACGCTTAGAAGATTCAGAATATAAACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACACAATACCATTTTGGAGTTAAAAGGGAACATCCGTGTATTCTGTCGCGTGAGGCCTTTGTTGCCAGATGAAAGTCGTGGCACAGAAGGCAAGATATTCAGTTATCCATTATCAATGGAAACTTCTGGACGAGGAATTGACCTAGCCCAAAATGGCCAGAAGCATTCTTTTAAATTTGATAAAGTTTTTATACAAGACGTATCACAAGAAGAAGTGTTTGTAGAAGTTTCACAGCTTGTACAAAGTGCTCTTGATGGTTATAAGGTTTGCATCTTTGCCTATGGTCAAACAGGATCAGGGAAAACCTATACAATGATGGGAAGACCTGGACATCCTGATGAAAAAGGGTTGATACCTCGTTCGTTAGAACAAATATTTCAAGCAAAACAGTCTCAACAACCTCAAGGCTGGAAATACGAAATGCAGGTGTCAATGTTGGAAATATACAACGAAACCATTCGCGATTTATTATCTACAAACAGATCATCATCGGATGTATCACGCGTGGAAAATGGTACTCCTGGAAAGCAATACACAATCAAACATGACGTAAATGGAAATACACATGTTTCTGATCTTACAGTAGTGGATGTACACAGTGCGAAAGAAGTCGCGTTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGAAAAACTCAGATGAATGAACAATCGTCAAGAAGTCATTTCGTGTTCACTCTTCGAATATATGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAATCTAATTGACCTTGCTGGTAGCGAGCGTCTTTCAAAGAGTGGTTCAACCGGTGACCGGTTGAGAGAAACTCAGGCAATTAACAAAAGCTTGTCATCATTGAGTGATGTCATATTTGCCTTGGCCAAGAAGGAAGATCATGTGCCATTCAGGAACTCAAAGCTTACATATCTTCTTCAACCTTGTCTTGGCGGGGACTCAAAGACGTTAATGTTTGTAAACATATCACCTGATCCTTCTTCGGTTGGCGAGTCACTATGCTCACTCCGGTTTGCTTCTAGAGTAAATGCTTGTGAGATTGGAACACCTCGTCGTCAGACCAATGGCCGCGCTACTGACTCTCGTTTGAGCTATTTCTGA

Protein sequence

>Msa0609430

MVTKIQNRPPLSLTHTSPTPSEFQNFVGDKHLLETMVETPINGRIRQALTVVNGGHDVGLSSAPPSNAGSDYGVIEFTREDVEALLNEKAKKKERFNYKERCENMVDYIKRLKVCIRWFQDLETSYSIDQEKLKNSLEMTKQKSIEIEMLLKIKEEELNLIIIEMRKNCTSLQEKLIKEEAEKSAAVESLSKEREARLDIERSHTTLSEDLGKAEREIQSANQKISSLNEMYKRLQEYITSLQQYNGKLHTELSSVEDELKRVEKEKATAEENIAMLKGQLTLSISSQEEATKQKDDLASEVYSMRGELKQVRDDRDRQLSQAQSLNAEFMKLKESRENSCIELDSLTLKANELEEKSSLKENQIKALQEKLAAAEKKLQVTDVSVFETRTEFEGQQKLVDELQKRLEDSEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLPDESRGTEGKIFSYPLSMETSGRGIDLAQNGQKHSFKFDKVFIQDVSQEEVFVEVSQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPDEKGLIPRSLEQIFQAKQSQQPQGWKYEMQVSMLEIYNETIRDLLSTNRSSSDVSRVENGTPGKQYTIKHDVNGNTHVSDLTVVDVHSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLRETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVGESLCSLRFASRVNACEIGTPRRQTNGRATDSRLSYF*