Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647190 | XP_003607087.1 | 86.957 | 46 | 6 | 0 | 1 | 46 | 1 | 46 | 1.75e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0647190 | 0.806430 | 8.256668e-50 | -8.615850e-47 |
| Msa0024710 | Msa0647190 | 0.801856 | 7.391913e-49 | -8.615850e-47 |
| Msa0090570 | Msa0647190 | 0.802652 | 5.068938e-49 | -8.615850e-47 |
| Msa0618470 | Msa0647190 | 0.803523 | 3.347047e-49 | -8.615850e-47 |
| Msa0647190 | Msa0658040 | 0.849788 | 2.582053e-60 | -8.615850e-47 |
| Msa0647190 | Msa0682680 | 0.821745 | 3.428949e-53 | -8.615850e-47 |
| Msa0647190 | Msa0748920 | 0.804107 | 2.532019e-49 | -8.615850e-47 |
| Msa0647190 | Msa0974950 | 0.832633 | 8.456676e-56 | -8.615850e-47 |
| Msa0647190 | Msa1447180 | 0.805008 | 1.642315e-49 | -8.615850e-47 |
| Msa0183850 | Msa0647190 | 0.805191 | 1.503990e-49 | -8.615850e-47 |
| Msa0389210 | Msa0647190 | 0.810458 | 1.141368e-50 | -8.615850e-47 |
| Msa0249580 | Msa0647190 | 0.825073 | 5.716855e-54 | -8.615850e-47 |
| Msa0257490 | Msa0647190 | 0.808795 | 2.597982e-50 | -8.615850e-47 |
| Msa0275020 | Msa0647190 | 0.818390 | 2.009395e-52 | -8.615850e-47 |
| Msa0315940 | Msa0647190 | 0.818513 | 1.885050e-52 | -8.615850e-47 |
| Msa0317970 | Msa0647190 | 0.810003 | 1.430431e-50 | -8.615850e-47 |
| Msa0326480 | Msa0647190 | 0.817055 | 4.021523e-52 | -8.615850e-47 |
| Msa0357900 | Msa0647190 | 0.808050 | 3.747177e-50 | -8.615850e-47 |
| Msa0527020 | Msa0647190 | 0.802276 | 6.057086e-49 | -8.615850e-47 |
| Msa0547160 | Msa0647190 | 0.801357 | 9.354840e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647190 | MtrunA17_Chr4g0036121 | 86.957 | 46 | 6 | 0 | 1 | 46 | 1 | 46 | 1.61e-21 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647190 | AT3G01130.8 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 2.36e-16 | 67.8 |
| Msa0647190 | AT3G01130.4 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 2.36e-16 | 67.8 |
| Msa0647190 | AT3G01130.5 | 68.889 | 45 | 14 | 0 | 1 | 45 | 1 | 45 | 6.18e-16 | 66.6 |
| Msa0647190 | AT3G01130.3 | 74.419 | 43 | 11 | 0 | 1 | 43 | 1 | 43 | 1.67e-15 | 65.5 |
| Msa0647190 | AT3G01130.6 | 74.419 | 43 | 11 | 0 | 1 | 43 | 1 | 43 | 1.67e-15 | 65.5 |
| Msa0647190 | AT3G01130.2 | 81.579 | 38 | 7 | 0 | 1 | 38 | 1 | 38 | 7.10e-15 | 63.9 |
| Msa0647190 | AT5G15320.1 | 73.684 | 38 | 10 | 0 | 1 | 38 | 1 | 38 | 6.28e-13 | 58.9 |
| Msa0647190 | AT5G15320.2 | 74.286 | 35 | 9 | 0 | 1 | 35 | 1 | 35 | 1.12e-11 | 55.8 |
| Msa0647190 | AT3G01130.7 | 80.645 | 31 | 6 | 0 | 1 | 31 | 1 | 31 | 3.75e-11 | 54.3 |
| Msa0647190 | AT3G01130.1 | 80.645 | 31 | 6 | 0 | 1 | 31 | 1 | 31 | 3.75e-11 | 54.3 |
Find 46 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAGAGTTTCTACTTAAA+AGG | 0.119565 | 4_3:-53162514 | Msa0647190:intron |
| CTTAAGATATTTGAGCTTAA+TGG | 0.120905 | 4_3:+53165851 | None:intergenic |
| TTCTCCTTCGGCATTGTTTA+TGG | 0.154246 | 4_3:-53165876 | Msa0647190:CDS |
| TCGGGTCAAAACAATAAAAT+AGG | 0.195787 | 4_3:-53166210 | Msa0647190:five_prime_UTR |
| CCAAGGATCCGATCCATATT+AGG | 0.242726 | 4_3:+53162451 | None:intergenic |
| ACCTCCACCAGGACCTTATT+CGG | 0.263027 | 4_3:-53166033 | Msa0647190:CDS |
| AGGTGCCATGAGAACGATTT+TGG | 0.283216 | 4_3:+53166052 | None:intergenic |
| TCCAACGGGAATCCCTAATA+TGG | 0.334269 | 4_3:-53162464 | Msa0647190:CDS |
| CAAGAAAGCGGCACAATAGA+AGG | 0.343984 | 4_3:+53162241 | None:intergenic |
| ATCAGAGTTTCTACTTAAAA+GGG | 0.350524 | 4_3:-53162513 | Msa0647190:intron |
| AGAGCTTCTGCTTTCTCCTT+CGG | 0.362734 | 4_3:-53165888 | Msa0647190:CDS |
| GCACAATAGAAGGAGAAGTT+TGG | 0.372636 | 4_3:+53162251 | None:intergenic |
| CATTAAGCTCAAATATCTTA+AGG | 0.421950 | 4_3:-53165850 | Msa0647190:intron |
| CCTAATATGGATCGGATCCT+TGG | 0.423224 | 4_3:-53162451 | Msa0647190:CDS |
| TATGGGGCCTAGACAGGTTC+GGG | 0.424431 | 4_3:-53166228 | None:intergenic |
| CAAGGATCCGATCCATATTA+GGG | 0.424788 | 4_3:+53162452 | None:intergenic |
| CAATATTATGGGGCCTAGAC+AGG | 0.428398 | 4_3:-53166234 | None:intergenic |
| TTAGGGATTCCCGTTGGAAC+AGG | 0.429861 | 4_3:+53162469 | None:intergenic |
| AGGGTACTGGTACCCGAATA+AGG | 0.430245 | 4_3:+53166020 | None:intergenic |
| TTATGGGGCCTAGACAGGTT+CGG | 0.460374 | 4_3:-53166229 | None:intergenic |
| CACAATAGAAGGAGAAGTTT+GGG | 0.464429 | 4_3:+53162252 | None:intergenic |
| CTTGGTCCTCCTAAAACTAC+TGG | 0.469587 | 4_3:-53162433 | Msa0647190:intron |
| CCTCCACCAGGACCTTATTC+GGG | 0.477063 | 4_3:-53166032 | Msa0647190:CDS |
| ATTCTCATAACCCTCTCTCT+AGG | 0.484635 | 4_3:-53166158 | Msa0647190:five_prime_UTR |
| CAAAACAATAAAATAGGGTA+CGG | 0.491141 | 4_3:-53166204 | Msa0647190:five_prime_UTR |
| CGGGTCAAAACAATAAAATA+GGG | 0.491676 | 4_3:-53166209 | Msa0647190:five_prime_UTR |
| GGGTACCAGTACCCTAGCTT+TGG | 0.498709 | 4_3:-53166012 | Msa0647190:intron |
| ACTAATCCTCCTGTTCCAAC+GGG | 0.498880 | 4_3:-53162478 | Msa0647190:CDS |
| TTCTCATAACCCTCTCTCTA+GGG | 0.504379 | 4_3:-53166157 | Msa0647190:five_prime_UTR |
| ATAGAAAACTCTATAGCTGC+TGG | 0.521964 | 4_3:-53162184 | Msa0647190:CDS |
| CCCGAATAAGGTCCTGGTGG+AGG | 0.529956 | 4_3:+53166032 | None:intergenic |
| AACTAATCCTCCTGTTCCAA+CGG | 0.530290 | 4_3:-53162479 | Msa0647190:CDS |
| GTTCTCATGGCACCTCCACC+AGG | 0.537603 | 4_3:-53166044 | Msa0647190:exon |
| TTTCTATCATCAGAGAGAGT+GGG | 0.549873 | 4_3:+53162200 | None:intergenic |
| CTGGTACCCGAATAAGGTCC+TGG | 0.559088 | 4_3:+53166026 | None:intergenic |
| AAAACAATAAAATAGGGTAC+GGG | 0.567349 | 4_3:-53166203 | Msa0647190:five_prime_UTR |
| TCCATATTAGGGATTCCCGT+TGG | 0.567885 | 4_3:+53162463 | None:intergenic |
| ATTAACCAAAATCGTTCTCA+TGG | 0.568740 | 4_3:-53166057 | Msa0647190:exon |
| GGGATTCCCGTTGGAACAGG+AGG | 0.575977 | 4_3:+53162472 | None:intergenic |
| AATTATCGAACCCTAGAGAG+AGG | 0.590997 | 4_3:+53166147 | None:intergenic |
| ATTATCGAACCCTAGAGAGA+GGG | 0.593913 | 4_3:+53166148 | None:intergenic |
| CGGGAATCCCTAATATGGAT+CGG | 0.596868 | 4_3:-53162459 | Msa0647190:CDS |
| TCAGAGTTTCTACTTAAAAG+GGG | 0.603899 | 4_3:-53162512 | Msa0647190:intron |
| GGATCCATAAACAATGCCGA+AGG | 0.643427 | 4_3:+53165872 | None:intergenic |
| CAGCATAACAGACAAGAAAG+CGG | 0.673165 | 4_3:+53162229 | None:intergenic |
| GTACCCGAATAAGGTCCTGG+TGG | 0.699483 | 4_3:+53166029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATTAAAAATCAGTTTT+TGG | - | chr4_3:53162654-53162673 | Msa0647190:intron | 15.0% |
| !!! | TGTAATAGTTTTGTTTAATT+AGG | - | chr4_3:53162704-53162723 | Msa0647190:intron | 15.0% |
| !!! | TAATTTTTATGTTAGTTACA+AGG | + | chr4_3:53163068-53163087 | None:intergenic | 15.0% |
| !! | ATGTTTATTAAGTAATAATC+CGG | - | chr4_3:53163705-53163724 | Msa0647190:intron | 15.0% |
| !! | TTTATATCATATTATGTAAG+TGG | - | chr4_3:53165036-53165055 | Msa0647190:intron | 15.0% |
| !! | ACAAATATAGAAATAACAAA+TGG | + | chr4_3:53165269-53165288 | None:intergenic | 15.0% |
| !! | AAAATTTCTAACAATTCAAC+TGG | + | chr4_3:53162446-53162465 | None:intergenic | 20.0% |
| !! | AAATCAGATCGTTAAAAAAA+GGG | + | chr4_3:53162590-53162609 | None:intergenic | 20.0% |
| !!! | TTTTACATCTGAATTCAAAA+GGG | + | chr4_3:53162635-53162654 | None:intergenic | 20.0% |
| !!! | TTTTTACATCTGAATTCAAA+AGG | + | chr4_3:53162636-53162655 | None:intergenic | 20.0% |
| !!! | TATTTTTCACTTGTTACTTA+GGG | - | chr4_3:53163124-53163143 | Msa0647190:intron | 20.0% |
| !!! | AAAAGTAGTACACTTTTTAA+AGG | + | chr4_3:53163413-53163432 | None:intergenic | 20.0% |
| !! | ACATAAATATGAGTACAAAA+AGG | + | chr4_3:53163689-53163708 | None:intergenic | 20.0% |
| !! | AATTACAAATTTGGTACTAA+AGG | - | chr4_3:53163897-53163916 | Msa0647190:intron | 20.0% |
| !! | AATTACAAATTTGGTACTAA+AGG | - | chr4_3:53163897-53163916 | Msa0647190:intron | 20.0% |
| !! | AATTACAAATTTGGTACTAA+AGG | - | chr4_3:53163897-53163916 | Msa0647190:intron | 20.0% |
| !!! | CTATCACTATTTTTTATAGA+TGG | + | chr4_3:53164800-53164819 | None:intergenic | 20.0% |
| !! | TATATCTGATCTAAATCTTT+CGG | + | chr4_3:53165162-53165181 | None:intergenic | 20.0% |
| !!! | TAGATCAGATATACTTTTTA+TGG | - | chr4_3:53165169-53165188 | Msa0647190:intron | 20.0% |
| !! | AGAAATAACAAATGGAAATA+TGG | + | chr4_3:53165261-53165280 | None:intergenic | 20.0% |
| !! | TTCTATATTTGTAAGAGATT+AGG | - | chr4_3:53165277-53165296 | Msa0647190:intron | 20.0% |
| !! | AATCAGAAGGAAAAAAAATT+GGG | + | chr4_3:53165530-53165549 | None:intergenic | 20.0% |
| !! | AAATCAGAAGGAAAAAAAAT+TGG | + | chr4_3:53165531-53165550 | None:intergenic | 20.0% |
| !! | TGACTCAATAAAAAAAAAAC+AGG | + | chr4_3:53165712-53165731 | None:intergenic | 20.0% |
| ! | CAAAACAATAAAATAGGGTA+CGG | - | chr4_3:53162197-53162216 | Msa0647190:CDS | 25.0% |
| ! | AAAACAATAAAATAGGGTAC+GGG | - | chr4_3:53162198-53162217 | Msa0647190:CDS | 25.0% |
| ! | ATAACAAAGAAGCGAAATTA+GGG | + | chr4_3:53162420-53162439 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGCGAAATT+AGG | + | chr4_3:53162421-53162440 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTGTGTATTTGT+AGG | - | chr4_3:53162485-53162504 | Msa0647190:CDS | 25.0% |
| ! | CTTAAGATATTTGAGCTTAA+TGG | + | chr4_3:53162553-53162572 | None:intergenic | 25.0% |
| ! | CATTAAGCTCAAATATCTTA+AGG | - | chr4_3:53162551-53162570 | Msa0647190:intron | 25.0% |
| ! | GAAATCAGATCGTTAAAAAA+AGG | + | chr4_3:53162591-53162610 | None:intergenic | 25.0% |
| ! | TTTACATCTGAATTCAAAAG+GGG | + | chr4_3:53162634-53162653 | None:intergenic | 25.0% |
| ! | TTTCGCTCTAATTTGATTAT+CGG | - | chr4_3:53162733-53162752 | Msa0647190:intron | 25.0% |
| !!! | GGTGTTATTAATCTAAACTT+TGG | - | chr4_3:53162857-53162876 | Msa0647190:intron | 25.0% |
| ! | TAGCTATACTATGTGATATA+TGG | - | chr4_3:53162949-53162968 | Msa0647190:intron | 25.0% |
| ! | ACTATGTGATATATGGATAT+TGG | - | chr4_3:53162956-53162975 | Msa0647190:intron | 25.0% |
| ! | CTATGTGATATATGGATATT+GGG | - | chr4_3:53162957-53162976 | Msa0647190:intron | 25.0% |
| ! | CATTTCTAACATTAGAACAT+GGG | + | chr4_3:53163002-53163021 | None:intergenic | 25.0% |
| !! | ACAAGTGAAAAATAGTTTGT+GGG | + | chr4_3:53163118-53163137 | None:intergenic | 25.0% |
| ! | AACAAGTGAAAAATAGTTTG+TGG | + | chr4_3:53163119-53163138 | None:intergenic | 25.0% |
| !!! | CTATTTTTCACTTGTTACTT+AGG | - | chr4_3:53163123-53163142 | Msa0647190:intron | 25.0% |
| ! | CAAAAATAATCCAATCCAAA+CGG | + | chr4_3:53163151-53163170 | None:intergenic | 25.0% |
| ! | ATATTGCCTTTAATGAAATG+TGG | + | chr4_3:53163381-53163400 | None:intergenic | 25.0% |
| ! | ACATTTCATTAAAGGCAATA+TGG | - | chr4_3:53163380-53163399 | Msa0647190:intron | 25.0% |
| ! | CTCGTTAAAAAATATCCAAT+AGG | - | chr4_3:53163467-53163486 | Msa0647190:intron | 25.0% |
| ! | CAATTTAGCAACAAATTTAG+CGG | - | chr4_3:53164038-53164057 | Msa0647190:intron | 25.0% |
| ! | CAATTTAGCAACAAATTTAG+CGG | - | chr4_3:53164038-53164057 | Msa0647190:intron | 25.0% |
| ! | CAATTTAGCAACAAATTTAG+CGG | - | chr4_3:53164038-53164057 | Msa0647190:intron | 25.0% |
| ! | TACTGAGTACTTATTTATTC+AGG | + | chr4_3:53164705-53164724 | None:intergenic | 25.0% |
| ! | TAAATTGAGTTTACTTGCAT+GGG | + | chr4_3:53164759-53164778 | None:intergenic | 25.0% |
| !! | TTTCCCAAAAGAATATGTTT+TGG | - | chr4_3:53164840-53164859 | Msa0647190:intron | 25.0% |
| ! | ACAAACAACACAAACAATTA+AGG | - | chr4_3:53164910-53164929 | Msa0647190:intron | 25.0% |
| ! | TTGCTTCTTGTTCAAAATTA+AGG | - | chr4_3:53164940-53164959 | Msa0647190:intron | 25.0% |
| !! | AATATTTTACCCTAAATCAG+GGG | + | chr4_3:53165116-53165135 | None:intergenic | 25.0% |
| !! | GAATATTTTACCCTAAATCA+GGG | + | chr4_3:53165117-53165136 | None:intergenic | 25.0% |
| !! | TGAATATTTTACCCTAAATC+AGG | + | chr4_3:53165118-53165137 | None:intergenic | 25.0% |
| ! | ATAACAAATGGAAATATGGA+AGG | + | chr4_3:53165257-53165276 | None:intergenic | 25.0% |
| ! | AGTAGAACAAATGTTATAAC+AGG | + | chr4_3:53165388-53165407 | None:intergenic | 25.0% |
| ! | TTCCATGTCATGAATTATTT+GGG | + | chr4_3:53165491-53165510 | None:intergenic | 25.0% |
| !! | TTTCCTTCTGATTTAAGATT+TGG | - | chr4_3:53165537-53165556 | Msa0647190:intron | 25.0% |
| ! | TAACCAAATCTTAAATCAGA+AGG | + | chr4_3:53165543-53165562 | None:intergenic | 25.0% |
| ! | CTGAAAATGTTCAAATTATG+AGG | - | chr4_3:53165589-53165608 | Msa0647190:intron | 25.0% |
| ! | ACAAGATAACTATCAAAACA+AGG | + | chr4_3:53165621-53165640 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTCGTTAATCTAA+GGG | + | chr4_3:53165781-53165800 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTTCGTTAATCTA+AGG | + | chr4_3:53165782-53165801 | None:intergenic | 25.0% |
| ! | ATCAGAAAGAAAAAAACATC+CGG | + | chr4_3:53165832-53165851 | None:intergenic | 25.0% |
| ! | TATCAGAGTTTCTACTTAAA+AGG | - | chr4_3:53165887-53165906 | Msa0647190:CDS | 25.0% |
| ! | ATCAGAGTTTCTACTTAAAA+GGG | - | chr4_3:53165888-53165907 | Msa0647190:CDS | 25.0% |
| ! | GCTGAAAAACAAAATTGAAA+AGG | + | chr4_3:53166108-53166127 | None:intergenic | 25.0% |
| TCGGGTCAAAACAATAAAAT+AGG | - | chr4_3:53162191-53162210 | Msa0647190:CDS | 30.0% | |
| CGGGTCAAAACAATAAAATA+GGG | - | chr4_3:53162192-53162211 | Msa0647190:CDS | 30.0% | |
| ATTAACCAAAATCGTTCTCA+TGG | - | chr4_3:53162344-53162363 | Msa0647190:intron | 30.0% | |
| GATTTCAATTGATCGAATGA+AGG | - | chr4_3:53162605-53162624 | Msa0647190:intron | 30.0% | |
| ! | TTAATCTAGGATAGACTTCA+AGG | - | chr4_3:53162789-53162808 | Msa0647190:intron | 30.0% |
| ! | TAATCTAGGATAGACTTCAA+GGG | - | chr4_3:53162790-53162809 | Msa0647190:intron | 30.0% |
| !! | CAGCACTGATTTATTATTGT+TGG | - | chr4_3:53162833-53162852 | Msa0647190:intron | 30.0% |
| !! | CACTGATTTATTATTGTTGG+TGG | - | chr4_3:53162836-53162855 | Msa0647190:intron | 30.0% |
| CCATTTCTAACATTAGAACA+TGG | + | chr4_3:53163003-53163022 | None:intergenic | 30.0% | |
| CCATGTTCTAATGTTAGAAA+TGG | - | chr4_3:53163000-53163019 | Msa0647190:intron | 30.0% | |
| CAAAATAAGCCTAATCCAAA+CGG | - | chr4_3:53163338-53163357 | Msa0647190:intron | 30.0% | |
| TCCAATCCACATTTCATTAA+AGG | - | chr4_3:53163372-53163391 | Msa0647190:intron | 30.0% | |
| AACTAGCAAAAGGTGAATAA+TGG | - | chr4_3:53163490-53163509 | Msa0647190:intron | 30.0% | |
| ! | CTAAAGAGGAAGATTTTGTA+GGG | - | chr4_3:53163518-53163537 | Msa0647190:intron | 30.0% |
| !! | AAGATTTTGTAGGGTTTGTT+TGG | - | chr4_3:53163527-53163546 | Msa0647190:intron | 30.0% |
| !! | AGATTTTGTAGGGTTTGTTT+GGG | - | chr4_3:53163528-53163547 | Msa0647190:intron | 30.0% |
| CAAAAAGGTGAAAACATTGA+TGG | + | chr4_3:53163674-53163693 | None:intergenic | 30.0% | |
| TGTTCATAATTTCTCACTCA+AGG | - | chr4_3:53163979-53163998 | Msa0647190:intron | 30.0% | |
| TGTTCATAATTTCTCACTCA+AGG | - | chr4_3:53163979-53163998 | Msa0647190:intron | 30.0% | |
| TGTTCATAATTTCTCACTCA+AGG | - | chr4_3:53163979-53163998 | Msa0647190:intron | 30.0% | |
| GTAAATTGAGTTTACTTGCA+TGG | + | chr4_3:53164760-53164779 | None:intergenic | 30.0% | |
| ! | CGACCAAAACATATTCTTTT+GGG | + | chr4_3:53164846-53164865 | None:intergenic | 30.0% |
| ! | ACGACCAAAACATATTCTTT+TGG | + | chr4_3:53164847-53164866 | None:intergenic | 30.0% |
| ! | TCCATGTGTTACGTTTTTAA+CGG | - | chr4_3:53165195-53165214 | Msa0647190:intron | 30.0% |
| AATCAAACACAATGAATGCA+AGG | + | chr4_3:53165365-53165384 | None:intergenic | 30.0% | |
| TACCCAAATAATTCATGACA+TGG | - | chr4_3:53165486-53165505 | Msa0647190:intron | 30.0% | |
| GTTCCATGTCATGAATTATT+TGG | + | chr4_3:53165492-53165511 | None:intergenic | 30.0% | |
| AAAAAAATTGGGAGAACACA+TGG | + | chr4_3:53165519-53165538 | None:intergenic | 30.0% | |
| ATGACAAAACAGTATATAGC+AGG | + | chr4_3:53165677-53165696 | None:intergenic | 30.0% | |
| AACGAAAAACAAGTCGAAAA+TGG | - | chr4_3:53165788-53165807 | Msa0647190:intron | 30.0% | |
| ! | ACTCTGATAGATCTAAAACA+TGG | + | chr4_3:53165876-53165895 | None:intergenic | 30.0% |
| TCAGAGTTTCTACTTAAAAG+GGG | - | chr4_3:53165889-53165908 | Msa0647190:CDS | 30.0% | |
| AATCAAAGATGCTATTCACA+GGG | + | chr4_3:53166028-53166047 | None:intergenic | 30.0% | |
| AAATCAAAGATGCTATTCAC+AGG | + | chr4_3:53166029-53166048 | None:intergenic | 30.0% | |
| TATCTCTCCTTTCTTATTCA+TGG | - | chr4_3:53166063-53166082 | Msa0647190:five_prime_UTR | 30.0% | |
| !!! | ACGATTTTGGTTAATCGCAA+AGG | + | chr4_3:53162339-53162358 | None:intergenic | 35.0% |
| ! | TTAGGGTTTTACCAAAGCTA+GGG | + | chr4_3:53162403-53162422 | None:intergenic | 35.0% |
| ! | ATTAGGGTTTTACCAAAGCT+AGG | + | chr4_3:53162404-53162423 | None:intergenic | 35.0% |
| GTGGTTTCTCTAGTTAATCT+AGG | - | chr4_3:53162776-53162795 | Msa0647190:intron | 35.0% | |
| ! | CTGTGGATCTAGTTTGAAAA+TGG | + | chr4_3:53162902-53162921 | None:intergenic | 35.0% |
| CTTAATTCAACCTAAGACTG+TGG | + | chr4_3:53162919-53162938 | None:intergenic | 35.0% | |
| CACATAGTATAGCTAAGCAA+AGG | + | chr4_3:53162944-53162963 | None:intergenic | 35.0% | |
| TGCTTGCAAATTTACTTCTG+TGG | + | chr4_3:53163092-53163111 | None:intergenic | 35.0% | |
| GCCTTTAATGAAATGTGGAT+TGG | + | chr4_3:53163376-53163395 | None:intergenic | 35.0% | |
| ATCCAATAGGAACTAGCAAA+AGG | - | chr4_3:53163480-53163499 | Msa0647190:intron | 35.0% | |
| GAATAATGGTTGTGCTAAAG+AGG | - | chr4_3:53163504-53163523 | Msa0647190:intron | 35.0% | |
| ! | GCTAAAGAGGAAGATTTTGT+AGG | - | chr4_3:53163517-53163536 | Msa0647190:intron | 35.0% |
| !! | TTAATTTGTTGCAGTGTCAG+CGG | + | chr4_3:53163583-53163602 | None:intergenic | 35.0% |
| ACACTGCAACAAATTAAGGA+CGG | - | chr4_3:53163586-53163605 | Msa0647190:intron | 35.0% | |
| ACGACATAGTAGCAGTATAA+TGG | - | chr4_3:53163766-53163785 | Msa0647190:intron | 35.0% | |
| CGACATAGTAGCAGTATAAT+GGG | - | chr4_3:53163767-53163786 | Msa0647190:intron | 35.0% | |
| TGGACTAATTTGAACTTGAG+TGG | - | chr4_3:53164630-53164649 | Msa0647190:intron | 35.0% | |
| !! | TTGAGTGGTAAGTTAGTCTT+GGG | - | chr4_3:53164645-53164664 | Msa0647190:intron | 35.0% |
| TTAAGTAGTCCCCTGATTTA+GGG | - | chr4_3:53165104-53165123 | Msa0647190:intron | 35.0% | |
| ACCGTTAAAAACGTAACACA+TGG | + | chr4_3:53165199-53165218 | None:intergenic | 35.0% | |
| !! | ATGGAAATATGGAAGGTGTT+CGG | + | chr4_3:53165250-53165269 | None:intergenic | 35.0% |
| ! | AGTTTCCAGTTGATATTGCA+CGG | - | chr4_3:53165650-53165669 | Msa0647190:intron | 35.0% |
| GAAAAACAAGTCGAAAATGG+CGG | - | chr4_3:53165791-53165810 | Msa0647190:intron | 35.0% | |
| !!! | CTATTACCAGTAGTTTTAGG+AGG | + | chr4_3:53165977-53165996 | None:intergenic | 35.0% |
| ! | CTGCTATTACCAGTAGTTTT+AGG | + | chr4_3:53165980-53165999 | None:intergenic | 35.0% |
| CTAAAACTACTGGTAATAGC+AGG | - | chr4_3:53165978-53165997 | Msa0647190:intron | 35.0% | |
| AGATGTGCCATGAATAAGAA+AGG | + | chr4_3:53166073-53166092 | None:intergenic | 35.0% | |
| CACAATAGAAGGAGAAGTTT+GGG | + | chr4_3:53166152-53166171 | None:intergenic | 35.0% | |
| TTTCTATCATCAGAGAGAGT+GGG | + | chr4_3:53166204-53166223 | None:intergenic | 35.0% | |
| ! | TTTTCTATCATCAGAGAGAG+TGG | + | chr4_3:53166205-53166224 | None:intergenic | 35.0% |
| ATAGAAAACTCTATAGCTGC+TGG | - | chr4_3:53166217-53166236 | Msa0647190:five_prime_UTR | 35.0% | |
| ATTCTCATAACCCTCTCTCT+AGG | - | chr4_3:53162243-53162262 | Msa0647190:CDS | 40.0% | |
| TTCTCATAACCCTCTCTCTA+GGG | - | chr4_3:53162244-53162263 | Msa0647190:CDS | 40.0% | |
| ATTATCGAACCCTAGAGAGA+GGG | + | chr4_3:53162256-53162275 | None:intergenic | 40.0% | |
| AATTATCGAACCCTAGAGAG+AGG | + | chr4_3:53162257-53162276 | None:intergenic | 40.0% | |
| ! | TTTTACCAAAGCTAGGGTAC+TGG | + | chr4_3:53162397-53162416 | None:intergenic | 40.0% |
| TTCTCCTTCGGCATTGTTTA+TGG | - | chr4_3:53162525-53162544 | Msa0647190:intron | 40.0% | |
| CAAACTAGATCCACAGTCTT+AGG | - | chr4_3:53162906-53162925 | Msa0647190:intron | 40.0% | |
| ATTGGGCGCTCTAATCAAAT+TGG | - | chr4_3:53162974-53162993 | Msa0647190:intron | 40.0% | |
| ATAAGCCTAATCCAAACGGA+TGG | - | chr4_3:53163342-53163361 | Msa0647190:intron | 40.0% | |
| GTTTACCATCCGTTTGGATT+AGG | + | chr4_3:53163350-53163369 | None:intergenic | 40.0% | |
| TGGATAGTTTACCATCCGTT+TGG | + | chr4_3:53163356-53163375 | None:intergenic | 40.0% | |
| ! | CACCTTTTGCTAGTTCCTAT+TGG | + | chr4_3:53163485-53163504 | None:intergenic | 40.0% |
| ! | TTTGTAGGGTTTGTTTGGGA+AGG | - | chr4_3:53163532-53163551 | Msa0647190:intron | 40.0% |
| GCTGACACTGCAACAAATTA+AGG | - | chr4_3:53163582-53163601 | Msa0647190:intron | 40.0% | |
| CACTGCAACAAATTAAGGAC+GGG | - | chr4_3:53163587-53163606 | Msa0647190:intron | 40.0% | |
| TTAGACGACAGTTACATAGC+CGG | + | chr4_3:53163727-53163746 | None:intergenic | 40.0% | |
| ! | TCACAAGGCATCAGATCTAT+TGG | + | chr4_3:53163810-53163829 | None:intergenic | 40.0% |
| !! | ACAAATTTAGCGGTGTTGTG+TGG | - | chr4_3:53164048-53164067 | Msa0647190:intron | 40.0% |
| ! | TCACAAGGCATCAGATCTAT+TGG | + | chr4_3:53163810-53163829 | None:intergenic | 40.0% |
| !! | ACAAATTTAGCGGTGTTGTG+TGG | - | chr4_3:53164048-53164067 | Msa0647190:intron | 40.0% |
| ! | TCACAAGGCATCAGATCTAT+TGG | + | chr4_3:53163810-53163829 | None:intergenic | 40.0% |
| !! | AAATTTAGCGGTGTTGTGTG+TGG | - | chr4_3:53164050-53164069 | Msa0647190:intron | 40.0% |
| ! | CTTGAGTGGTAAGTTAGTCT+TGG | - | chr4_3:53164644-53164663 | Msa0647190:intron | 40.0% |
| TTACTTGCATGGGATTGAGA+AGG | + | chr4_3:53164749-53164768 | None:intergenic | 40.0% | |
| CTCATCATTCGAGTACAACA+GGG | + | chr4_3:53164985-53165004 | None:intergenic | 40.0% | |
| ACTCATCATTCGAGTACAAC+AGG | + | chr4_3:53164986-53165005 | None:intergenic | 40.0% | |
| GTTAAGTAGTCCCCTGATTT+AGG | - | chr4_3:53165103-53165122 | Msa0647190:intron | 40.0% | |
| ! | GTGTTACGTTTTTAACGGTC+TGG | - | chr4_3:53165200-53165219 | Msa0647190:intron | 40.0% |
| ! | GTTTCCAGTTGATATTGCAC+GGG | - | chr4_3:53165651-53165670 | Msa0647190:intron | 40.0% |
| AACTAATCCTCCTGTTCCAA+CGG | - | chr4_3:53165922-53165941 | Msa0647190:intron | 40.0% | |
| CAAGGATCCGATCCATATTA+GGG | + | chr4_3:53165952-53165971 | None:intergenic | 40.0% | |
| GCACAATAGAAGGAGAAGTT+TGG | + | chr4_3:53166153-53166172 | None:intergenic | 40.0% | |
| CAGCATAACAGACAAGAAAG+CGG | + | chr4_3:53166175-53166194 | None:intergenic | 40.0% | |
| !! | AGGTGCCATGAGAACGATTT+TGG | + | chr4_3:53162352-53162371 | None:intergenic | 45.0% |
| AGAGCTTCTGCTTTCTCCTT+CGG | - | chr4_3:53162513-53162532 | Msa0647190:intron | 45.0% | |
| GGATCCATAAACAATGCCGA+AGG | + | chr4_3:53162532-53162551 | None:intergenic | 45.0% | |
| AACTAGAGAAACCACAGCTG+CGG | + | chr4_3:53162771-53162790 | None:intergenic | 45.0% | |
| ! | CTTGTTACTTAGGGTCCGTT+TGG | - | chr4_3:53163133-53163152 | Msa0647190:intron | 45.0% |
| TACTTAGGGTCCGTTTGGAT+TGG | - | chr4_3:53163138-53163157 | Msa0647190:intron | 45.0% | |
| GTTTGAAGACCTATGCGCAT+AGG | + | chr4_3:53163561-53163580 | None:intergenic | 45.0% | |
| TTCTCACTCAAGGTGTAGTG+CGG | - | chr4_3:53163989-53164008 | Msa0647190:intron | 45.0% | |
| TTCTCACTCAAGGTGTAGTG+CGG | - | chr4_3:53163989-53164008 | Msa0647190:intron | 45.0% | |
| TTCTCACTCAAGGTGTAGTG+CGG | - | chr4_3:53163989-53164008 | Msa0647190:intron | 45.0% | |
| !! | ATCCATGTCACTGGTTTCAG+TGG | + | chr4_3:53165457-53165476 | None:intergenic | 45.0% |
| ACTGAAACCAGTGACATGGA+TGG | - | chr4_3:53165456-53165475 | Msa0647190:intron | 45.0% | |
| GCGGTCTAATGTTCTAATGC+CGG | - | chr4_3:53165810-53165829 | Msa0647190:intron | 45.0% | |
| ACTAATCCTCCTGTTCCAAC+GGG | - | chr4_3:53165923-53165942 | Msa0647190:intron | 45.0% | |
| TCCAACGGGAATCCCTAATA+TGG | - | chr4_3:53165937-53165956 | Msa0647190:intron | 45.0% | |
| TCCATATTAGGGATTCCCGT+TGG | + | chr4_3:53165941-53165960 | None:intergenic | 45.0% | |
| CGGGAATCCCTAATATGGAT+CGG | - | chr4_3:53165942-53165961 | Msa0647190:intron | 45.0% | |
| CCAAGGATCCGATCCATATT+AGG | + | chr4_3:53165953-53165972 | None:intergenic | 45.0% | |
| CCTAATATGGATCGGATCCT+TGG | - | chr4_3:53165950-53165969 | Msa0647190:intron | 45.0% | |
| !!! | CAGTAGTTTTAGGAGGACCA+AGG | + | chr4_3:53165970-53165989 | None:intergenic | 45.0% |
| CTTGGTCCTCCTAAAACTAC+TGG | - | chr4_3:53165968-53165987 | Msa0647190:intron | 45.0% | |
| TAGCAGGTTTCCACTCTATG+TGG | - | chr4_3:53165994-53166013 | Msa0647190:intron | 45.0% | |
| AGCAGGTTTCCACTCTATGT+GGG | - | chr4_3:53165995-53166014 | Msa0647190:intron | 45.0% | |
| CAAGAAAGCGGCACAATAGA+AGG | + | chr4_3:53166163-53166182 | None:intergenic | 45.0% | |
| !!! | TTAATTTTTGTTAATTTTTT+TGG | - | chr4_3:53162468-53162487 | Msa0647190:CDS | 5.0% |
| !!! | AAATTTTTTAATTACAAATT+TGG | - | chr4_3:53163888-53163907 | Msa0647190:intron | 5.0% |
| !!! | AAAATTTTAAATTACAAATT+TGG | - | chr4_3:53164168-53164187 | Msa0647190:intron | 5.0% |
| !!! | AAAATTTTAAATTACAAATT+TGG | - | chr4_3:53164168-53164187 | Msa0647190:intron | 5.0% |
| !! | GTTTTGACCCGAACCTGTCT+AGG | + | chr4_3:53162183-53162202 | None:intergenic | 50.0% |
| ACCTCCACCAGGACCTTATT+CGG | - | chr4_3:53162368-53162387 | Msa0647190:intron | 50.0% | |
| !! | AGGGTACTGGTACCCGAATA+AGG | + | chr4_3:53162384-53162403 | None:intergenic | 50.0% |
| TTTACAAGTTCCCGCAGCTG+TGG | - | chr4_3:53162757-53162776 | Msa0647190:intron | 50.0% | |
| ACTAGAGAAACCACAGCTGC+GGG | + | chr4_3:53162770-53162789 | None:intergenic | 50.0% | |
| ! | GTAGGGTTTGTTTGGGAAGG+AGG | - | chr4_3:53163535-53163554 | Msa0647190:intron | 50.0% |
| GATGCCTTGTGATGTAGCAC+TGG | - | chr4_3:53163818-53163837 | Msa0647190:intron | 50.0% | |
| GATGCCTTGTGATGTAGCAC+TGG | - | chr4_3:53163818-53163837 | Msa0647190:intron | 50.0% | |
| GATGCCTTGTGATGTAGCAC+TGG | - | chr4_3:53163818-53163837 | Msa0647190:intron | 50.0% | |
| GGGACTACTTAACACTCGCA+AGG | + | chr4_3:53165096-53165115 | None:intergenic | 50.0% | |
| GGTGTTCGGCATTAGAGACA+AGG | + | chr4_3:53165236-53165255 | None:intergenic | 50.0% | |
| ! | CTCAGCTTTCTGGTGAGACT+TGG | + | chr4_3:53165423-53165442 | None:intergenic | 50.0% |
| CAAGTCTCACCAGAAAGCTG+AGG | - | chr4_3:53165421-53165440 | Msa0647190:intron | 50.0% | |
| CACCACTGAAACCAGTGACA+TGG | - | chr4_3:53165452-53165471 | Msa0647190:intron | 50.0% | |
| TTCTGCTCCATCCATGTCAC+TGG | + | chr4_3:53165466-53165485 | None:intergenic | 50.0% | |
| TTAGGGATTCCCGTTGGAAC+AGG | + | chr4_3:53165935-53165954 | None:intergenic | 50.0% | |
| GGAAACAGACCCACATAGAG+TGG | + | chr4_3:53166007-53166026 | None:intergenic | 50.0% | |
| CCTCCACCAGGACCTTATTC+GGG | - | chr4_3:53162369-53162388 | Msa0647190:intron | 55.0% | |
| GTACCCGAATAAGGTCCTGG+TGG | + | chr4_3:53162375-53162394 | None:intergenic | 55.0% | |
| CTGGTACCCGAATAAGGTCC+TGG | + | chr4_3:53162378-53162397 | None:intergenic | 55.0% | |
| GGGTACCAGTACCCTAGCTT+TGG | - | chr4_3:53162389-53162408 | Msa0647190:intron | 55.0% | |
| GCAGCCAGTGCTACATCACA+AGG | + | chr4_3:53163825-53163844 | None:intergenic | 55.0% | |
| GCAGCCAGTGCTACATCACA+AGG | + | chr4_3:53163825-53163844 | None:intergenic | 55.0% | |
| GCAGCCAGTGCTACATCACA+AGG | + | chr4_3:53163825-53163844 | None:intergenic | 55.0% | |
| TCACCAGAAAGCTGAGGCCA+AGG | - | chr4_3:53165427-53165446 | Msa0647190:intron | 55.0% | |
| CTGGTTTCAGTGGTGAGCCT+TGG | + | chr4_3:53165447-53165466 | None:intergenic | 55.0% | |
| CAGGCCCGTGCAATATCAAC+TGG | + | chr4_3:53165658-53165677 | None:intergenic | 55.0% | |
| GTTCTCATGGCACCTCCACC+AGG | - | chr4_3:53162357-53162376 | Msa0647190:intron | 60.0% | |
| CCCGAATAAGGTCCTGGTGG+AGG | + | chr4_3:53162372-53162391 | None:intergenic | 60.0% | |
| GGAAGGAGGCCTATGCGCAT+AGG | - | chr4_3:53163549-53163568 | Msa0647190:intron | 60.0% | |
| !! | AGCACTGGCTGCACATGCAC+AGG | - | chr4_3:53163833-53163852 | Msa0647190:intron | 60.0% |
| !! | GCACTGGCTGCACATGCACA+GGG | - | chr4_3:53163834-53163853 | Msa0647190:intron | 60.0% |
| TGGCTGCACATGCACAGGGT+CGG | - | chr4_3:53163838-53163857 | Msa0647190:intron | 60.0% | |
| !! | AGCACTGGCTGCACATGCAC+AGG | - | chr4_3:53163833-53163852 | Msa0647190:intron | 60.0% |
| !! | GCACTGGCTGCACATGCACA+GGG | - | chr4_3:53163834-53163853 | Msa0647190:intron | 60.0% |
| TGGCTGCACATGCACAGGGT+CGG | - | chr4_3:53163838-53163857 | Msa0647190:intron | 60.0% | |
| !! | AGCACTGGCTGCACATGCAC+AGG | - | chr4_3:53163833-53163852 | Msa0647190:intron | 60.0% |
| !! | GCACTGGCTGCACATGCACA+GGG | - | chr4_3:53163834-53163853 | Msa0647190:intron | 60.0% |
| TGGCTGCACATGCACAGGGT+CGG | - | chr4_3:53163838-53163857 | Msa0647190:intron | 60.0% | |
| GAGCCTTGGCCTCAGCTTTC+TGG | + | chr4_3:53165433-53165452 | None:intergenic | 60.0% | |
| GGGATTCCCGTTGGAACAGG+AGG | + | chr4_3:53165932-53165951 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53162178 | 53166245 | 53162178 | ID=Msa0647190;Name=Msa0647190 |
| chr4_3 | mRNA | 53162178 | 53166245 | 53162178 | ID=Msa0647190-mRNA-1;Parent=Msa0647190;Name=Msa0647190-mRNA-1;_AED=0.39;_eAED=0.55;_QI=185|0.25|0.4|0.8|1|1|5|0|112 |
| chr4_3 | exon | 53162178 | 53162296 | 53162178 | ID=Msa0647190-mRNA-1:exon:13238;Parent=Msa0647190-mRNA-1 |
| chr4_3 | exon | 53162434 | 53162530 | 53162434 | ID=Msa0647190-mRNA-1:exon:13237;Parent=Msa0647190-mRNA-1 |
| chr4_3 | exon | 53162682 | 53162690 | 53162682 | ID=Msa0647190-mRNA-1:exon:13236;Parent=Msa0647190-mRNA-1 |
| chr4_3 | exon | 53165851 | 53165916 | 53165851 | ID=Msa0647190-mRNA-1:exon:13235;Parent=Msa0647190-mRNA-1 |
| chr4_3 | exon | 53166013 | 53166245 | 53166013 | ID=Msa0647190-mRNA-1:exon:13234;Parent=Msa0647190-mRNA-1 |
| chr4_3 | five_prime_UTR | 53166061 | 53166245 | 53166061 | ID=Msa0647190-mRNA-1:five_prime_utr;Parent=Msa0647190-mRNA-1 |
| chr4_3 | CDS | 53166013 | 53166060 | 53166013 | ID=Msa0647190-mRNA-1:cds;Parent=Msa0647190-mRNA-1 |
| chr4_3 | CDS | 53165851 | 53165916 | 53165851 | ID=Msa0647190-mRNA-1:cds;Parent=Msa0647190-mRNA-1 |
| chr4_3 | CDS | 53162682 | 53162690 | 53162682 | ID=Msa0647190-mRNA-1:cds;Parent=Msa0647190-mRNA-1 |
| chr4_3 | CDS | 53162434 | 53162530 | 53162434 | ID=Msa0647190-mRNA-1:cds;Parent=Msa0647190-mRNA-1 |
| chr4_3 | CDS | 53162178 | 53162296 | 53162178 | ID=Msa0647190-mRNA-1:cds;Parent=Msa0647190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
