AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682680 MtrunA17_Chr4g0028981 97.861 187 2 1 1 187 1 185 6.54e-132 367
Msa0682680 MtrunA17_Chr1g0186591 48.000 150 77 1 37 185 1 150 7.34e-44 143
Msa0682680 MtrunA17_Chr1g0186551 49.007 151 76 1 37 186 1 151 5.62e-43 140
Msa0682680 MtrunA17_Chr4g0009521 44.444 153 82 1 37 186 2 154 1.35e-37 127
Msa0682680 MtrunA17_Chr8g0373951 38.095 147 90 1 37 182 1 147 8.26e-30 107
Msa0682680 MtrunA17_Chr1g0167831 45.113 133 72 1 37 168 1 133 8.18e-26 97.1
Msa0682680 MtrunA17_Chr5g0403141 37.086 151 94 1 37 186 2 152 1.64e-19 80.9
Msa0682680 MtrunA17_Chr4g0034251 36.424 151 95 1 37 186 15 165 4.48e-18 77.4
Msa0682680 MtrunA17_Chr5g0412891 72.093 43 12 0 35 77 26 68 9.45e-15 66.2
Msa0682680 MtrunA17_Chr7g0248311 60.000 45 18 0 33 77 26 70 4.18e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682680 AT2G28370.1 72.193 187 44 1 1 187 1 179 2.54e-88 257
Msa0682680 AT2G37200.1 63.102 187 61 2 1 187 2 180 2.60e-70 211
Msa0682680 AT2G37200.2 63.102 187 61 2 1 187 31 209 7.59e-70 211
Msa0682680 AT3G23200.1 50.331 151 74 1 37 186 1 151 4.20e-44 144
Msa0682680 AT3G53850.1 45.752 153 80 1 37 186 1 153 8.66e-40 133
Msa0682680 AT3G53850.2 45.752 153 80 1 37 186 1 153 8.66e-40 133
Msa0682680 AT5G02060.1 47.020 151 77 1 37 184 1 151 1.78e-34 119
Msa0682680 AT3G50810.3 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0682680 AT3G50810.2 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0682680 AT3G50810.1 39.735 151 90 1 37 186 1 151 2.75e-28 103
Msa0682680 AT3G23200.2 47.664 107 55 1 81 186 18 124 3.24e-26 97.4
Msa0682680 AT3G53850.3 40.602 133 74 2 57 186 10 140 2.06e-25 95.9
Msa0682680 AT4G37235.1 35.417 144 87 3 45 186 9 148 1.33e-17 76.3
Msa0682680 AT1G49405.1 32.061 131 89 0 37 167 1 131 8.90e-14 65.9

Find 69 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATGTTTATGCCATTT+TGG 0.142401 4_4:+44628690 Msa0682680:CDS
AGATATCTGAATTAGGATTT+TGG 0.182472 4_4:+44629313 Msa0682680:three_prime_UTR
TCTTCTTAACTTCTGGTCTT+TGG 0.220309 4_4:+44629098 Msa0682680:CDS
ATTATGAATTGAAGTGTAAT+TGG 0.246491 4_4:+44623644 Msa0682680:five_prime_UTR
TTCCTTCTGTCACTGCCTTC+TGG 0.281533 4_4:+44623892 Msa0682680:CDS
TCAAACAAGATATCTGAATT+AGG 0.288553 4_4:+44629306 Msa0682680:three_prime_UTR
CGTCATTTCTTCTTAACTTC+TGG 0.294825 4_4:+44629091 Msa0682680:CDS
CTGCTGGCTTGCAGACTTTG+TGG 0.320664 4_4:+44628650 Msa0682680:CDS
CAAAGATCGTCTTACCAAAA+TGG 0.321266 4_4:-44628704 None:intergenic
AACATACCAAGATGAAGAAT+TGG 0.339934 4_4:-44623359 None:intergenic
AGTTTCCTTGTTGCGGCTGC+TGG 0.344483 4_4:+44628634 Msa0682680:intron
TGTGCATTATTCTATTCTAT+TGG 0.349073 4_4:+44629400 Msa0682680:three_prime_UTR
GATCTGTATTAGAAGCAAAA+TGG 0.361630 4_4:-44623329 None:intergenic
GGCTGCTGCACTATCTGTTA+TGG 0.379001 4_4:+44623854 Msa0682680:CDS
GTAGTTGGAACTTCTTCAAC+TGG 0.379154 4_4:-44623702 None:intergenic
AGTACATGAATCACATCATT+TGG 0.380513 4_4:-44629273 None:intergenic
CTCTCTCCAATTCTTCATCT+TGG 0.392487 4_4:+44623353 Msa0682680:five_prime_UTR
CAAGGCATGCCTGGTACTAT+TGG 0.395458 4_4:+44623795 Msa0682680:CDS
TCAGATATCTTGTTTGATCA+AGG 0.402168 4_4:-44629300 None:intergenic
GTTGTTTATAAAGTTTGTTT+TGG 0.403633 4_4:+44629189 Msa0682680:three_prime_UTR
CTTGTCAGTTCATTTACAAT+TGG 0.411892 4_4:+44628739 Msa0682680:CDS
GTTGTGGTTTAATTCACATT+TGG 0.426478 4_4:+44629341 Msa0682680:three_prime_UTR
GTGCTCATTGATAATGATCT+TGG 0.426791 4_4:+44628991 Msa0682680:CDS
GCAGCAGCTTGTGCATCAGC+GGG 0.451898 4_4:+44628961 Msa0682680:CDS
TGGTGGTGGAATGATTAAAC+AGG 0.463313 4_4:+44629361 Msa0682680:three_prime_UTR
TGCAGCAGCTTGTGCATCAG+CGG 0.471402 4_4:+44628960 Msa0682680:CDS
TTGTTGGTGTTGTTGAATGT+TGG 0.483962 4_4:-44623273 None:intergenic
GGCATGCCTGGTACTATTGG+TGG 0.484167 4_4:+44623798 Msa0682680:CDS
GTATATATATTGAAGTGAAC+GGG 0.489712 4_4:-44629423 None:intergenic
GTGGTTTAATTCACATTTGG+TGG 0.493013 4_4:+44629344 Msa0682680:three_prime_UTR
ACTGCGAAACACGCAGAGAA+AGG 0.497789 4_4:-44623821 None:intergenic
TTATGAATTGAAGTGTAATT+GGG 0.498808 4_4:+44623645 Msa0682680:five_prime_UTR
CACCAACAACTGCACTCTGC+AGG 0.499536 4_4:+44623287 Msa0682680:five_prime_UTR
CAGGCATGGCATTCATATGC+TGG 0.517979 4_4:+44629055 Msa0682680:CDS
GTTCATTTACAATTGGCGAT+GGG 0.519096 4_4:+44628746 Msa0682680:CDS
TGCCTGCAGAGTGCAGTTGT+TGG 0.519412 4_4:-44623289 None:intergenic
TGTTTGAAGTTTGTTAAGCT+TGG 0.520797 4_4:+44629229 Msa0682680:three_prime_UTR
GTTTAATTCACATTTGGTGG+TGG 0.522418 4_4:+44629347 Msa0682680:three_prime_UTR
GTTCAGTTTGAAACGGCTAC+AGG 0.524200 4_4:+44629036 Msa0682680:CDS
CCACCACCACCATCAGTAGT+TGG 0.528851 4_4:-44623717 None:intergenic
ACAAAATGTAAATGTTCCTA+TGG 0.529828 4_4:+44623755 Msa0682680:CDS
CCACTGTGTTCAGTTTGAAA+CGG 0.533491 4_4:+44629029 Msa0682680:CDS
TGTTCCTATGGTGAGGATGA+AGG 0.538780 4_4:+44623767 Msa0682680:CDS
CACACATGGCAACAGAAACA+AGG 0.540791 4_4:+44629162 Msa0682680:three_prime_UTR
AAGGATATTCAAGGCATGCC+TGG 0.544386 4_4:+44623786 Msa0682680:CDS
CCAACTACTGATGGTGGTGG+TGG 0.546534 4_4:+44623717 Msa0682680:CDS
AGTTCATTTACAATTGGCGA+TGG 0.548303 4_4:+44628745 Msa0682680:CDS
AGTATATATATTGAAGTGAA+CGG 0.551809 4_4:-44629424 None:intergenic
GTGAGGATGAAGGATATTCA+AGG 0.554642 4_4:+44623777 Msa0682680:CDS
TTCATTTACAATTGGCGATG+GGG 0.560218 4_4:+44628747 Msa0682680:CDS
GTTTGAAACGGCTACAGGCA+TGG 0.571754 4_4:+44629041 Msa0682680:CDS
TACCAGAAGGCAGTGACAGA+AGG 0.577487 4_4:-44623894 None:intergenic
GCAAGCCAGCAGCCGCAACA+AGG 0.578048 4_4:-44628639 None:intergenic
GAAGAAGTTCCAACTACTGA+TGG 0.579056 4_4:+44623708 Msa0682680:CDS
GAAAGGCCACCAATAGTACC+AGG 0.589357 4_4:-44623804 None:intergenic
ATATCCTTCATCCTCACCAT+AGG 0.600777 4_4:-44623771 None:intergenic
AGTGACAGAAGGAAAATCAC+TGG 0.602419 4_4:-44623883 None:intergenic
CAACTGGGTGAATTGAAGCA+TGG 0.610931 4_4:-44623686 None:intergenic
ACACATGGCTGTCACACACA+TGG 0.614908 4_4:+44629148 Msa0682680:three_prime_UTR
GACAGAAGGAAAATCACTGG+TGG 0.621848 4_4:-44623880 None:intergenic
ACTTCTGGTCTTTGGCATCG+AGG 0.636800 4_4:+44629106 Msa0682680:CDS
CAGAAGTTAAGAAGAAATGA+CGG 0.644975 4_4:-44629090 None:intergenic
TTGTAAATGAACTGACAAGT+CGG 0.646171 4_4:-44628735 None:intergenic
ACACATGGCAACAGAAACAA+GGG 0.658611 4_4:+44629163 Msa0682680:three_prime_UTR
TAGTTGGAACTTCTTCAACT+GGG 0.665313 4_4:-44623701 None:intergenic
ATGTAAATGTTCCTATGGTG+AGG 0.675797 4_4:+44623760 Msa0682680:CDS
GTTCCAACTACTGATGGTGG+TGG 0.688480 4_4:+44623714 Msa0682680:CDS
GAAGTTCCAACTACTGATGG+TGG 0.707650 4_4:+44623711 Msa0682680:CDS
CCGTTTCAAACTGAACACAG+TGG 0.767887 4_4:-44629029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATAAAAATATTAT+TGG - chr4_4:44626137-44626156 None:intergenic 0.0%
!!! CTTTTATGTATATAAATAAA+AGG + chr4_4:44623476-44623495 Msa0682680:intron 10.0%
!!! AACTTTATTGTATTTTTTAT+TGG - chr4_4:44623524-44623543 None:intergenic 10.0%
!! TAAAAAAATAGCAAAAAATA+TGG - chr4_4:44627819-44627838 None:intergenic 10.0%
!!! AGTTAAATTGTTTTTTATAT+AGG - chr4_4:44628436-44628455 None:intergenic 10.0%
!!! TTTTATTACTTTTTAGATCA+TGG + chr4_4:44623549-44623568 Msa0682680:intron 15.0%
!!! TTTATTACTTTTTAGATCAT+GGG + chr4_4:44623550-44623569 Msa0682680:intron 15.0%
!!! TTGTTTATTGTATAAGTTTT+CGG + chr4_4:44623924-44623943 Msa0682680:intron 15.0%
!!! GTTATTTTTATAAGCTATAT+TGG - chr4_4:44624305-44624324 None:intergenic 15.0%
!!! ATTAGATAGAGATATTTTAT+GGG - chr4_4:44625816-44625835 None:intergenic 15.0%
!!! AATTAGATAGAGATATTTTA+TGG - chr4_4:44625817-44625836 None:intergenic 15.0%
!! AAATTAAGAACATTGTAAAA+TGG - chr4_4:44626030-44626049 None:intergenic 15.0%
!!! AACAATCTCTAAAATTTTAA+TGG - chr4_4:44626067-44626086 None:intergenic 15.0%
!! AATCTAAAGGTAAAAATAAA+TGG + chr4_4:44626667-44626686 Msa0682680:intron 15.0%
!!! AAATTTTGATGAAAATTGAT+CGG - chr4_4:44626801-44626820 None:intergenic 15.0%
!! GGTTATTGAAATTATTTGAT+GGG + chr4_4:44623571-44623590 Msa0682680:intron 20.0%
!! ATTATGAATTGAAGTGTAAT+TGG + chr4_4:44623644-44623663 Msa0682680:five_prime_UTR 20.0%
!! TTATGAATTGAAGTGTAATT+GGG + chr4_4:44623645-44623664 Msa0682680:five_prime_UTR 20.0%
!! TTTATTTAAATTACACTGTG+TGG + chr4_4:44624154-44624173 Msa0682680:intron 20.0%
!! TATACACTATTTAGTACAAA+GGG - chr4_4:44624445-44624464 None:intergenic 20.0%
!!! ATTTCTTATTGTATGTTTTC+AGG - chr4_4:44624823-44624842 None:intergenic 20.0%
!! TCTAAGAATAATTGTTCTAA+AGG - chr4_4:44624856-44624875 None:intergenic 20.0%
!! AAATGACAGAAAATAACAAA+TGG + chr4_4:44625274-44625293 Msa0682680:intron 20.0%
!! ATTATCATTTACAAAAGTCA+AGG + chr4_4:44625454-44625473 Msa0682680:intron 20.0%
!!! ACAATAGTAGTTTTGATATA+TGG + chr4_4:44625672-44625691 Msa0682680:intron 20.0%
!!! TAGTTTTGATATATGGTTAA+AGG + chr4_4:44625679-44625698 Msa0682680:intron 20.0%
!!! AGTTTTGATATATGGTTAAA+GGG + chr4_4:44625680-44625699 Msa0682680:intron 20.0%
!!! TGATGAAATCTAAATTTTTC+TGG - chr4_4:44625960-44625979 None:intergenic 20.0%
!!! ATTTATGTTTTTTTGAGTTG+TGG + chr4_4:44626397-44626416 Msa0682680:intron 20.0%
!!! AATGATAATGAGAGAAATAA+TGG + chr4_4:44626525-44626544 Msa0682680:intron 20.0%
!!! ATAAACTTTATTTCTCTCAT+TGG - chr4_4:44626598-44626617 None:intergenic 20.0%
!! AATGAGAGAAATAAAGTTTA+TGG + chr4_4:44626597-44626616 Msa0682680:intron 20.0%
!! CTGTATGAAAACTTAATAAT+GGG + chr4_4:44626960-44626979 Msa0682680:intron 20.0%
!!! GTCATATCTTTTTACTTTTA+TGG + chr4_4:44626993-44627012 Msa0682680:intron 20.0%
!!! TTTTTAGTAGTAGTTCTATT+TGG + chr4_4:44627833-44627852 Msa0682680:intron 20.0%
!! CAAAGTTTCATATTAACTAT+TGG + chr4_4:44628067-44628086 Msa0682680:intron 20.0%
!! TAAGAGCTTATTTGTTTATT+TGG + chr4_4:44628287-44628306 Msa0682680:intron 20.0%
!!! TGCATTATTTCTATAATCAA+TGG - chr4_4:44628464-44628483 None:intergenic 20.0%
!! ATATAATGATCTGTTCAATT+AGG - chr4_4:44628532-44628551 None:intergenic 20.0%
!!! GAACAGATCATTATATATTT+TGG + chr4_4:44628536-44628555 Msa0682680:intron 20.0%
!!! TCTATATAGCATTTTCAAAT+GGG - chr4_4:44628885-44628904 None:intergenic 20.0%
!!! GTTGTTTATAAAGTTTGTTT+TGG + chr4_4:44629189-44629208 Msa0682680:three_prime_UTR 20.0%
!!! ATGTTTCTTTTTCTGCTTTT+TGG + chr4_4:44623377-44623396 Msa0682680:intron 25.0%
!!! TGTTTCTTTTTCTGCTTTTT+GGG + chr4_4:44623378-44623397 Msa0682680:intron 25.0%
! TAATTCATGTACTATAAGCT+AGG + chr4_4:44623416-44623435 Msa0682680:intron 25.0%
! GGGTTATTGAAATTATTTGA+TGG + chr4_4:44623570-44623589 Msa0682680:intron 25.0%
! ACAAAATGTAAATGTTCCTA+TGG + chr4_4:44623755-44623774 Msa0682680:CDS 25.0%
!! AATTGTCACCTTTTAGATTA+AGG + chr4_4:44624032-44624051 Msa0682680:intron 25.0%
! TAGACAAAAAATCTCTAACT+CGG - chr4_4:44624063-44624082 None:intergenic 25.0%
!!! AGTTAGAGATTTTTTGTCTA+TGG + chr4_4:44624063-44624082 Msa0682680:intron 25.0%
! AAGCTATATTGGAGAATATA+TGG - chr4_4:44624294-44624313 None:intergenic 25.0%
! GTATACACTATTTAGTACAA+AGG - chr4_4:44624446-44624465 None:intergenic 25.0%
! AATAAAAGAGAGAAATGCAA+TGG + chr4_4:44624606-44624625 Msa0682680:intron 25.0%
! ATAAAAGAGAGAAATGCAAT+GGG + chr4_4:44624607-44624626 Msa0682680:intron 25.0%
!! ATCAGATTTGTTTGTCAATT+GGG + chr4_4:44624676-44624695 Msa0682680:intron 25.0%
! CAAGAAAAGACTAAAAAAGA+TGG + chr4_4:44624893-44624912 Msa0682680:intron 25.0%
!!! TCATTTTTTCAAATTCCTAC+CGG + chr4_4:44625011-44625030 Msa0682680:intron 25.0%
! AATCAATAGTGATGTTCTAA+AGG - chr4_4:44625121-44625140 None:intergenic 25.0%
! AACAGTGATAATATCTTAGA+GGG - chr4_4:44625165-44625184 None:intergenic 25.0%
! AAACAGTGATAATATCTTAG+AGG - chr4_4:44625166-44625185 None:intergenic 25.0%
! TCTCACACTAAAATCTAAAT+AGG + chr4_4:44625520-44625539 Msa0682680:intron 25.0%
! CTCACACTAAAATCTAAATA+GGG + chr4_4:44625521-44625540 Msa0682680:intron 25.0%
! TTATCTAAAGGTGGAAAAAA+TGG - chr4_4:44625748-44625767 None:intergenic 25.0%
! TCATTAATCAAATCTTGTCT+TGG - chr4_4:44626510-44626529 None:intergenic 25.0%
! GAGAGAAATAATGGTTTAAT+TGG + chr4_4:44626534-44626553 Msa0682680:intron 25.0%
! ATAATGGTTTAATTGGAAGT+TGG + chr4_4:44626541-44626560 Msa0682680:intron 25.0%
! TAAAGTTTATGGATCAGATT+TGG + chr4_4:44626608-44626627 Msa0682680:intron 25.0%
! ATGGTTAAATGTTTATCTAC+TGG + chr4_4:44626765-44626784 Msa0682680:intron 25.0%
! TGGTTAAATGTTTATCTACT+GGG + chr4_4:44626766-44626785 Msa0682680:intron 25.0%
!! TTACATATGTTTCTGATACA+TGG + chr4_4:44626896-44626915 Msa0682680:intron 25.0%
!! TGAATTTGAAATTGTTCTAG+AGG + chr4_4:44626922-44626941 Msa0682680:intron 25.0%
! GCTGTATGAAAACTTAATAA+TGG + chr4_4:44626959-44626978 Msa0682680:intron 25.0%
!!! ATGAAAACTTAATAATGGGT+TGG + chr4_4:44626964-44626983 Msa0682680:intron 25.0%
! TATTTCCAGAATAGAAATCT+AGG - chr4_4:44627446-44627465 None:intergenic 25.0%
!! TATTCTGGAAATAAAGTAGT+CGG + chr4_4:44627453-44627472 Msa0682680:intron 25.0%
! TATGAAACTTTGATAGAAAC+TGG - chr4_4:44628059-44628078 None:intergenic 25.0%
! ATTGTTGTAGAGTCTTAAAA+TGG + chr4_4:44628097-44628116 Msa0682680:intron 25.0%
! TTGTTGTAGAGTCTTAAAAT+GGG + chr4_4:44628098-44628117 Msa0682680:intron 25.0%
! ATTTATTTGTAGACAATACC+AGG + chr4_4:44628206-44628225 Msa0682680:intron 25.0%
! AAACTCAATAAAACACTTAC+AGG - chr4_4:44628331-44628350 None:intergenic 25.0%
!!! TATTTTGGCTTTATCTTTGT+TGG + chr4_4:44628551-44628570 Msa0682680:intron 25.0%
! TAGTCTTTCGTAAATATAAG+AGG - chr4_4:44628581-44628600 None:intergenic 25.0%
!! ACAATATTAATGAGTCTTGT+TGG - chr4_4:44628781-44628800 None:intergenic 25.0%
!! CTCTATATAGCATTTTCAAA+TGG - chr4_4:44628886-44628905 None:intergenic 25.0%
!!! ATAAAGTTTGTTTTGGTATC+AGG + chr4_4:44629196-44629215 Msa0682680:three_prime_UTR 25.0%
! TCAAACAAGATATCTGAATT+AGG + chr4_4:44629306-44629325 Msa0682680:three_prime_UTR 25.0%
!! AGATATCTGAATTAGGATTT+TGG + chr4_4:44629313-44629332 Msa0682680:three_prime_UTR 25.0%
! TGTGCATTATTCTATTCTAT+TGG + chr4_4:44629400-44629419 Msa0682680:three_prime_UTR 25.0%
GATCTGTATTAGAAGCAAAA+TGG - chr4_4:44623332-44623351 None:intergenic 30.0%
AACATACCAAGATGAAGAAT+TGG - chr4_4:44623362-44623381 None:intergenic 30.0%
!!! TGATGGGTTTTGATTAGATT+TGG + chr4_4:44623587-44623606 Msa0682680:intron 30.0%
AAGAAGAAGAAGAAGAAAGT+TGG + chr4_4:44623612-44623631 Msa0682680:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAAAGTT+GGG + chr4_4:44623613-44623632 Msa0682680:five_prime_UTR 30.0%
AAACAAAACGAATTACCAGA+AGG - chr4_4:44623910-44623929 None:intergenic 30.0%
!!! CGGTTTTTTGTTGTTTTTGT+TGG + chr4_4:44623944-44623963 Msa0682680:intron 30.0%
GACAATTTAGCTAAATCCAA+TGG - chr4_4:44624019-44624038 None:intergenic 30.0%
!! TTGCAGATAGTGGAAAATAA+CGG + chr4_4:44624131-44624150 Msa0682680:intron 30.0%
ATAAGCTGTTTAATCCAAAC+AGG + chr4_4:44624419-44624438 Msa0682680:intron 30.0%
AAAGGGAAGAGAGATAAAAT+AGG + chr4_4:44624570-44624589 Msa0682680:intron 30.0%
! GATCAGATTTGTTTGTCAAT+TGG + chr4_4:44624675-44624694 Msa0682680:intron 30.0%
ATATCAGTGTCATGTGTATT+TGG + chr4_4:44624753-44624772 Msa0682680:intron 30.0%
TGAACTTCGTTAACAATTTC+TGG - chr4_4:44624930-44624949 None:intergenic 30.0%
! ATTGTAACTAACTAGCTCTT+AGG - chr4_4:44625253-44625272 None:intergenic 30.0%
GATAATTTCACCAAATCCAA+CGG - chr4_4:44625440-44625459 None:intergenic 30.0%
! GTGTTTTCAATAACAGATTG+CGG + chr4_4:44625552-44625571 Msa0682680:intron 30.0%
GGTGCATAATAAGATTTGAT+GGG - chr4_4:44625776-44625795 None:intergenic 30.0%
TGGTGCATAATAAGATTTGA+TGG - chr4_4:44625777-44625796 None:intergenic 30.0%
! GATAGAGATATTTTATGGGT+AGG - chr4_4:44625812-44625831 None:intergenic 30.0%
AGAAGAAGAATAAGTCCAAT+GGG - chr4_4:44625911-44625930 None:intergenic 30.0%
AAGAAGAAGAATAAGTCCAA+TGG - chr4_4:44625912-44625931 None:intergenic 30.0%
!!! GTTTGAAGTTTTTTGATTCC+AGG + chr4_4:44625996-44626015 Msa0682680:intron 30.0%
TGTAAAATGGAATGTAATCC+TGG - chr4_4:44626017-44626036 None:intergenic 30.0%
TCTTAGAAACTCAAGAACAA+TGG - chr4_4:44626095-44626114 None:intergenic 30.0%
CAAAGCAATAGAAATATGAG+AGG - chr4_4:44626186-44626205 None:intergenic 30.0%
ATCTACAAATTGTTGTGTGT+GGG - chr4_4:44626212-44626231 None:intergenic 30.0%
TATCTACAAATTGTTGTGTG+TGG - chr4_4:44626213-44626232 None:intergenic 30.0%
ATAATATATGAGTGACACGA+GGG + chr4_4:44626230-44626249 Msa0682680:intron 30.0%
TAAAGCATGTGGAAAAACAT+TGG + chr4_4:44626262-44626281 Msa0682680:intron 30.0%
AAAGCATGTGGAAAAACATT+GGG + chr4_4:44626263-44626282 Msa0682680:intron 30.0%
! GGAAAAACATTGGGATTTTA+AGG + chr4_4:44626272-44626291 Msa0682680:intron 30.0%
!!! ATGTTTTTTTGAGTTGTGGT+TGG + chr4_4:44626401-44626420 Msa0682680:intron 30.0%
!!! TGAGTTTTTGAGTTATTCGA+TGG + chr4_4:44626440-44626459 Msa0682680:intron 30.0%
TGGTGATTGATCTAATCTAA+AGG + chr4_4:44626654-44626673 Msa0682680:intron 30.0%
AGTTAGACCAATCTAATTGA+TGG + chr4_4:44626694-44626713 Msa0682680:intron 30.0%
! TTAAAATGTTTCTGCCACAT+GGG + chr4_4:44626739-44626758 Msa0682680:intron 30.0%
TTTATGGTCAGTGAATTCAA+TGG + chr4_4:44627009-44627028 Msa0682680:intron 30.0%
TTATGGTCAGTGAATTCAAT+GGG + chr4_4:44627010-44627029 Msa0682680:intron 30.0%
ATAAAATGTAAGACTCCCTA+AGG - chr4_4:44627231-44627250 None:intergenic 30.0%
AAAGGACACACAATATATCA+TGG + chr4_4:44627272-44627291 Msa0682680:intron 30.0%
TTGCTATGTGTATATAGCAA+TGG + chr4_4:44627299-44627318 Msa0682680:intron 30.0%
TGCTATGTGTATATAGCAAT+GGG + chr4_4:44627300-44627319 Msa0682680:intron 30.0%
AGAGTCTTTCAAATATCTCT+GGG + chr4_4:44627370-44627389 Msa0682680:intron 30.0%
GGATTTCCATTTGTAATTTC+TGG + chr4_4:44627391-44627410 Msa0682680:intron 30.0%
TATGGACCAGAAATTACAAA+TGG - chr4_4:44627400-44627419 None:intergenic 30.0%
! ACCATCTTAGAATTTGAGTT+GGG - chr4_4:44627585-44627604 None:intergenic 30.0%
AACCATCTTAGAATTTGAGT+TGG - chr4_4:44627586-44627605 None:intergenic 30.0%
TGTCATATCTCATCCAATAT+GGG - chr4_4:44627712-44627731 None:intergenic 30.0%
ATGTCATATCTCATCCAATA+TGG - chr4_4:44627713-44627732 None:intergenic 30.0%
!!! ATATGGCCAGAATTTTAGTT+AGG - chr4_4:44627802-44627821 None:intergenic 30.0%
! CAACAATACCAAATGCTTTT+AGG - chr4_4:44628157-44628176 None:intergenic 30.0%
AAGCATTTGGTATTGTTGTA+TGG + chr4_4:44628159-44628178 Msa0682680:intron 30.0%
ATTTGGTATTGTTGTATGGA+GGG + chr4_4:44628163-44628182 Msa0682680:intron 30.0%
! TTTTATCAGTTTCCTTGTTG+CGG + chr4_4:44628627-44628646 Msa0682680:intron 30.0%
!! TACTGATGTTTATGCCATTT+TGG + chr4_4:44628690-44628709 Msa0682680:CDS 30.0%
TTGTAAATGAACTGACAAGT+CGG - chr4_4:44628738-44628757 None:intergenic 30.0%
CTTGTCAGTTCATTTACAAT+TGG + chr4_4:44628739-44628758 Msa0682680:CDS 30.0%
ACATGTATCTTATTACATGC+AGG + chr4_4:44628918-44628937 Msa0682680:intron 30.0%
CAGAAGTTAAGAAGAAATGA+CGG - chr4_4:44629093-44629112 None:intergenic 30.0%
!! TGTTTGAAGTTTGTTAAGCT+TGG + chr4_4:44629229-44629248 Msa0682680:three_prime_UTR 30.0%
AGTACATGAATCACATCATT+TGG - chr4_4:44629276-44629295 None:intergenic 30.0%
! TCAGATATCTTGTTTGATCA+AGG - chr4_4:44629303-44629322 None:intergenic 30.0%
GTTGTGGTTTAATTCACATT+TGG + chr4_4:44629341-44629360 Msa0682680:three_prime_UTR 30.0%
!! TTGTTGGTGTTGTTGAATGT+TGG - chr4_4:44623276-44623295 None:intergenic 35.0%
TAGTTGGAACTTCTTCAACT+GGG - chr4_4:44623704-44623723 None:intergenic 35.0%
ATGTAAATGTTCCTATGGTG+AGG + chr4_4:44623760-44623779 Msa0682680:CDS 35.0%
!!! TGTTTCGCAGTTTGTTTTTG+CGG + chr4_4:44623833-44623852 Msa0682680:CDS 35.0%
TTGTAAGAATCTTGTGCCAT+TGG + chr4_4:44624000-44624019 Msa0682680:intron 35.0%
CGGAATCTCCTTAATCTAAA+AGG - chr4_4:44624043-44624062 None:intergenic 35.0%
AGAGATTTGTCTCACACTAA+AGG + chr4_4:44624089-44624108 Msa0682680:intron 35.0%
GAGATTTGTCTCACACTAAA+GGG + chr4_4:44624090-44624109 Msa0682680:intron 35.0%
ATGTTGTCAATTGCAGATAG+TGG + chr4_4:44624121-44624140 Msa0682680:intron 35.0%
TCTAATAAGCCAATCCAAAC+AGG - chr4_4:44624203-44624222 None:intergenic 35.0%
TTGGTGAGAGAATTAGGTAA+GGG + chr4_4:44624539-44624558 Msa0682680:intron 35.0%
TAGGTAAGGGAGAAATAGAA+AGG + chr4_4:44624552-44624571 Msa0682680:intron 35.0%
AGGTAAGGGAGAAATAGAAA+GGG + chr4_4:44624553-44624572 Msa0682680:intron 35.0%
AAGTATCTGTCACATGGTTA+TGG + chr4_4:44624725-44624744 Msa0682680:intron 35.0%
! TTCAGGTTTCATCGTTAATC+TGG - chr4_4:44624806-44624825 None:intergenic 35.0%
TTCTTAGCACTCAGTATGAA+AGG + chr4_4:44625206-44625225 Msa0682680:intron 35.0%
! TAACTAACTAGCTCTTAGGA+GGG - chr4_4:44625249-44625268 None:intergenic 35.0%
!! TACGAAGTGTTGTCAAATAG+TGG - chr4_4:44625633-44625652 None:intergenic 35.0%
! CTAAGTTGGACCAATCTAAT+TGG - chr4_4:44625724-44625743 None:intergenic 35.0%
GTGGAAAAAATGGTCTAAGT+TGG - chr4_4:44625738-44625757 None:intergenic 35.0%
! TGATGGGTGATCTTATCTAA+AGG - chr4_4:44625760-44625779 None:intergenic 35.0%
!! TTTATGGGTAGGATTTGTTG+TGG - chr4_4:44625801-44625820 None:intergenic 35.0%
! AAGAATAAGTCCAATGGGTT+TGG - chr4_4:44625906-44625925 None:intergenic 35.0%
GATAATATATGAGTGACACG+AGG + chr4_4:44626229-44626248 Msa0682680:intron 35.0%
! TTTGAGTTATTCGATGGTGA+TGG + chr4_4:44626446-44626465 Msa0682680:intron 35.0%
!! TTTATGGATCAGATTTGGTG+TGG + chr4_4:44626613-44626632 Msa0682680:intron 35.0%
GTTTGCACCATCAATTAGAT+TGG - chr4_4:44626704-44626723 None:intergenic 35.0%
!! TGGCAGAAACATTTTAACCA+CGG - chr4_4:44626736-44626755 None:intergenic 35.0%
! GTTAAAATGTTTCTGCCACA+TGG + chr4_4:44626738-44626757 Msa0682680:intron 35.0%
CATTTAACCATTTACCCATG+TGG - chr4_4:44626756-44626775 None:intergenic 35.0%
TCATCAAAATTTCTGCGACA+TGG + chr4_4:44626809-44626828 Msa0682680:intron 35.0%
CATCAAAATTTCTGCGACAT+GGG + chr4_4:44626810-44626829 Msa0682680:intron 35.0%
GGGTATGGTATAAATATCAG+TGG + chr4_4:44626830-44626849 Msa0682680:intron 35.0%
GTATAAATATCAGTGGCATG+TGG + chr4_4:44626837-44626856 Msa0682680:intron 35.0%
TGCATGTTTATGCATGCTAA+TGG + chr4_4:44627050-44627069 Msa0682680:intron 35.0%
! ATGGATGGCTACATTTTGTT+GGG - chr4_4:44627117-44627136 None:intergenic 35.0%
TACTTTGTTCTCCATACCTT+AGG + chr4_4:44627212-44627231 Msa0682680:intron 35.0%
ACTTTGTTCTCCATACCTTA+GGG + chr4_4:44627213-44627232 Msa0682680:intron 35.0%
GCTATGTGTATATAGCAATG+GGG + chr4_4:44627301-44627320 Msa0682680:intron 35.0%
CAGAGATATTTGAAAGACTC+TGG - chr4_4:44627371-44627390 None:intergenic 35.0%
CAGAGTCTTTCAAATATCTC+TGG + chr4_4:44627369-44627388 Msa0682680:intron 35.0%
CCAAAAGTTTGTATGGAGTA+TGG - chr4_4:44627418-44627437 None:intergenic 35.0%
! CCATACTCCATACAAACTTT+TGG + chr4_4:44627415-44627434 Msa0682680:intron 35.0%
TCTAGCCTAGATTTCTATTC+TGG + chr4_4:44627438-44627457 Msa0682680:intron 35.0%
CATGTATCAATCACCTAATG+CGG - chr4_4:44627487-44627506 None:intergenic 35.0%
!! GAAAATTGGCTTGTAGTGTA+AGG - chr4_4:44627547-44627566 None:intergenic 35.0%
! TACACTACAAGCCAATTTTC+TGG + chr4_4:44627547-44627566 Msa0682680:intron 35.0%
! ACACTACAAGCCAATTTTCT+GGG + chr4_4:44627548-44627567 Msa0682680:intron 35.0%
TTAACTCAACCCCAGAAAAT+TGG - chr4_4:44627561-44627580 None:intergenic 35.0%
! ACCCAACTCAAATTCTAAGA+TGG + chr4_4:44627581-44627600 Msa0682680:intron 35.0%
! ACATTTCTCACCTTTTGAAC+TGG + chr4_4:44627756-44627775 Msa0682680:intron 35.0%
!!! ACCTTTTGAACTGGTGTTAT+GGG + chr4_4:44627765-44627784 Msa0682680:intron 35.0%
GTTAGGCCTAACTAAAATTC+TGG + chr4_4:44627793-44627812 Msa0682680:intron 35.0%
! AGTAGTTCTATTTGGTACGA+AGG + chr4_4:44627841-44627860 Msa0682680:intron 35.0%
! GTAGTTCTATTTGGTACGAA+GGG + chr4_4:44627842-44627861 Msa0682680:intron 35.0%
! TAGTTCTATTTGGTACGAAG+GGG + chr4_4:44627843-44627862 Msa0682680:intron 35.0%
!!! GACGGAAGTAAGACTTTTTT+TGG - chr4_4:44627936-44627955 None:intergenic 35.0%
ACCATGATATACGTCAAAGA+CGG - chr4_4:44627954-44627973 None:intergenic 35.0%
! ATACCAAATGCTTTTAGGCA+TGG - chr4_4:44628152-44628171 None:intergenic 35.0%
CATTTGGTATTGTTGTATGG+AGG + chr4_4:44628162-44628181 Msa0682680:intron 35.0%
TTTGGTATTGTTGTATGGAG+GGG + chr4_4:44628164-44628183 Msa0682680:intron 35.0%
!! TAGACAATACCAGGTTTTGA+TGG + chr4_4:44628215-44628234 Msa0682680:intron 35.0%
ATATCAGAACCATCAAAACC+TGG - chr4_4:44628227-44628246 None:intergenic 35.0%
! ATACTAGCCTACACTGTTTA+GGG + chr4_4:44628257-44628276 Msa0682680:intron 35.0%
CAAAGATCGTCTTACCAAAA+TGG - chr4_4:44628707-44628726 None:intergenic 35.0%
AGTTCATTTACAATTGGCGA+TGG + chr4_4:44628745-44628764 Msa0682680:CDS 35.0%
GTTCATTTACAATTGGCGAT+GGG + chr4_4:44628746-44628765 Msa0682680:CDS 35.0%
TTCATTTACAATTGGCGATG+GGG + chr4_4:44628747-44628766 Msa0682680:CDS 35.0%
!! GTGCTCATTGATAATGATCT+TGG + chr4_4:44628991-44629010 Msa0682680:CDS 35.0%
CGTCATTTCTTCTTAACTTC+TGG + chr4_4:44629091-44629110 Msa0682680:CDS 35.0%
! TCTTCTTAACTTCTGGTCTT+TGG + chr4_4:44629098-44629117 Msa0682680:CDS 35.0%
TAAAAACAGTGTCACACACA+TGG + chr4_4:44629133-44629152 Msa0682680:three_prime_UTR 35.0%
!!! TAGGATTTTGGAATGTGTTG+TGG + chr4_4:44629325-44629344 Msa0682680:three_prime_UTR 35.0%
GTGGTTTAATTCACATTTGG+TGG + chr4_4:44629344-44629363 Msa0682680:three_prime_UTR 35.0%
! GTTTAATTCACATTTGGTGG+TGG + chr4_4:44629347-44629366 Msa0682680:three_prime_UTR 35.0%
CTCTCTCCAATTCTTCATCT+TGG + chr4_4:44623353-44623372 Msa0682680:five_prime_UTR 40.0%
GTAGTTGGAACTTCTTCAAC+TGG - chr4_4:44623705-44623724 None:intergenic 40.0%
GAAGAAGTTCCAACTACTGA+TGG + chr4_4:44623708-44623727 Msa0682680:CDS 40.0%
ATATCCTTCATCCTCACCAT+AGG - chr4_4:44623774-44623793 None:intergenic 40.0%
GTGAGGATGAAGGATATTCA+AGG + chr4_4:44623777-44623796 Msa0682680:CDS 40.0%
AGTGACAGAAGGAAAATCAC+TGG - chr4_4:44623886-44623905 None:intergenic 40.0%
GCTTATTAGAGCATGTCTGT+TGG + chr4_4:44624213-44624232 Msa0682680:intron 40.0%
TTTAGTACAAAGGGCCTGTT+TGG - chr4_4:44624436-44624455 None:intergenic 40.0%
CTTGGTGAGAGAATTAGGTA+AGG + chr4_4:44624538-44624557 Msa0682680:intron 40.0%
! TCATCGAAGTATCTGTCACA+TGG + chr4_4:44624719-44624738 Msa0682680:intron 40.0%
TGTAATCACATGTGTCGTGT+CGG - chr4_4:44624981-44625000 None:intergenic 40.0%
CTTTCAGTCAGATTCTATCC+CGG - chr4_4:44625074-44625093 None:intergenic 40.0%
CTGAGTGCTAAGAATTAGAG+AGG - chr4_4:44625200-44625219 None:intergenic 40.0%
! GTAACTAACTAGCTCTTAGG+AGG - chr4_4:44625250-44625269 None:intergenic 40.0%
!! TTGTCAAATAGTGGCTCTAG+TGG - chr4_4:44625624-44625643 None:intergenic 40.0%
AGTTGGACCAATCTAATTGG+CGG - chr4_4:44625721-44625740 None:intergenic 40.0%
TGGGTGATCTTATCTAAAGG+TGG - chr4_4:44625757-44625776 None:intergenic 40.0%
! TAAGTCCAATGGGTTTGGTT+AGG - chr4_4:44625901-44625920 None:intergenic 40.0%
! GGTTCAAGGTTTAAAGCATG+TGG + chr4_4:44626251-44626270 Msa0682680:intron 40.0%
TCTTAGTTGAAGACCAGCAA+AGG + chr4_4:44626316-44626335 Msa0682680:intron 40.0%
!! AGTTATTCGATGGTGATGGT+TGG + chr4_4:44626450-44626469 Msa0682680:intron 40.0%
GGATAGTGCATAGCAAGATT+TGG + chr4_4:44626634-44626653 Msa0682680:intron 40.0%
!! GGCAGAAACATTTTAACCAC+GGG - chr4_4:44626735-44626754 None:intergenic 40.0%
AAATTTCTGCGACATGGGTA+TGG + chr4_4:44626815-44626834 Msa0682680:intron 40.0%
ATATCAGTGGCATGTGGATT+TGG + chr4_4:44626843-44626862 Msa0682680:intron 40.0%
! CATGGATGGCTACATTTTGT+TGG - chr4_4:44627118-44627137 None:intergenic 40.0%
TAGCCATCCATGTCACTATT+TGG + chr4_4:44627126-44627145 Msa0682680:intron 40.0%
TTTGGCACCAAATAGTGACA+TGG - chr4_4:44627136-44627155 None:intergenic 40.0%
!! GTCACTATTTGGTGCCAAAA+TGG + chr4_4:44627137-44627156 Msa0682680:intron 40.0%
! ACGTTACAACAGCTCCATTT+TGG - chr4_4:44627154-44627173 None:intergenic 40.0%
ATGTAAGACTCCCTAAGGTA+TGG - chr4_4:44627226-44627245 None:intergenic 40.0%
TATATAGCAATGGGGTGTGA+AGG + chr4_4:44627309-44627328 Msa0682680:intron 40.0%
! AAGGAAAGTGTGTGGAATGT+TGG + chr4_4:44627328-44627347 Msa0682680:intron 40.0%
AAGTGTGTGGAATGTTGGAA+AGG + chr4_4:44627333-44627352 Msa0682680:intron 40.0%
TGGAATGTTGGAAAGGAAGT+AGG + chr4_4:44627340-44627359 Msa0682680:intron 40.0%
GGCTAGACCAAAAGTTTGTA+TGG - chr4_4:44627425-44627444 None:intergenic 40.0%
! CCACTTACGGACATTTTTGT+AGG - chr4_4:44627511-44627530 None:intergenic 40.0%
CCTACAAAAATGTCCGTAAG+TGG + chr4_4:44627508-44627527 Msa0682680:intron 40.0%
! CACTACAAGCCAATTTTCTG+GGG + chr4_4:44627549-44627568 Msa0682680:intron 40.0%
! TAGCCTATCCAAGACTTGTT+AGG + chr4_4:44627609-44627628 Msa0682680:intron 40.0%
TAGCCTAACAAGTCTTGGAT+AGG - chr4_4:44627615-44627634 None:intergenic 40.0%
CAGATGTCCAATCATGTCTT+GGG + chr4_4:44627663-44627682 Msa0682680:intron 40.0%
! GTATGTTGACTGTCCCATAT+TGG + chr4_4:44627696-44627715 Msa0682680:intron 40.0%
!! CACCTTTTGAACTGGTGTTA+TGG + chr4_4:44627764-44627783 Msa0682680:intron 40.0%
!!! CCTTTTGAACTGGTGTTATG+GGG + chr4_4:44627766-44627785 Msa0682680:intron 40.0%
TCCGTCTTTGACGTATATCA+TGG + chr4_4:44627950-44627969 Msa0682680:intron 40.0%
CTTTGACGTATATCATGGTC+AGG + chr4_4:44627955-44627974 Msa0682680:intron 40.0%
CAGTGTAGGCTAGTATGTAT+TGG - chr4_4:44628253-44628272 None:intergenic 40.0%
! CATACTAGCCTACACTGTTT+AGG + chr4_4:44628256-44628275 Msa0682680:intron 40.0%
CAAATCACCCTAAACAGTGT+AGG - chr4_4:44628267-44628286 None:intergenic 40.0%
CACTCTTAAGCTTCATAACG+TGG + chr4_4:44628825-44628844 Msa0682680:intron 40.0%
AAGCTTCATAACGTGGACAT+TGG + chr4_4:44628832-44628851 Msa0682680:intron 40.0%
CCACTGTGTTCAGTTTGAAA+CGG + chr4_4:44629029-44629048 Msa0682680:CDS 40.0%
ACACATGGCAACAGAAACAA+GGG + chr4_4:44629163-44629182 Msa0682680:three_prime_UTR 40.0%
!! TGGTGGTGGAATGATTAAAC+AGG + chr4_4:44629361-44629380 Msa0682680:three_prime_UTR 40.0%
CAACTGGGTGAATTGAAGCA+TGG - chr4_4:44623689-44623708 None:intergenic 45.0%
GAAGTTCCAACTACTGATGG+TGG + chr4_4:44623711-44623730 Msa0682680:CDS 45.0%
TGTTCCTATGGTGAGGATGA+AGG + chr4_4:44623767-44623786 Msa0682680:CDS 45.0%
AAGGATATTCAAGGCATGCC+TGG + chr4_4:44623786-44623805 Msa0682680:CDS 45.0%
GACAGAAGGAAAATCACTGG+TGG - chr4_4:44623883-44623902 None:intergenic 45.0%
CCAATCTTTGACAACGCTCT+GGG + chr4_4:44624177-44624196 Msa0682680:intron 45.0%
! CTGTTGGCATACGTTTTGTG+AGG + chr4_4:44624229-44624248 Msa0682680:intron 45.0%
! CAACGCTTGGTGAGAGAATT+AGG + chr4_4:44624533-44624552 Msa0682680:intron 45.0%
GAGAAATGCAATGGGAGAAG+TGG + chr4_4:44624615-44624634 Msa0682680:intron 45.0%
GAAGTGGTGTGAAGTGATAG+AGG + chr4_4:44624631-44624650 Msa0682680:intron 45.0%
!! ACACCACGCGAGTTTGTTAA+GGG + chr4_4:44625305-44625324 Msa0682680:intron 45.0%
AAACCCTTAACAAACTCGCG+TGG - chr4_4:44625311-44625330 None:intergenic 45.0%
TTGTAAGAAGCTTGTGCCGT+TGG + chr4_4:44625421-44625440 Msa0682680:intron 45.0%
TTGTTTCACGATGCGCTACT+TGG - chr4_4:44625656-44625675 None:intergenic 45.0%
GTTTGCACCGCCAATTAGAT+TGG + chr4_4:44625711-44625730 Msa0682680:intron 45.0%
!! TGGGTAGGATTTGTTGTGGA+TGG - chr4_4:44625797-44625816 None:intergenic 45.0%
TGCTACCTAACCAAACCCAT+TGG + chr4_4:44625893-44625912 Msa0682680:intron 45.0%
GAAGACCAGCAAAGGATGTA+AGG + chr4_4:44626324-44626343 Msa0682680:intron 45.0%
ACCAGCAAAGGATGTAAGGA+AGG + chr4_4:44626328-44626347 Msa0682680:intron 45.0%
TCCTTCCTTACATCCTTTGC+TGG - chr4_4:44626332-44626351 None:intergenic 45.0%
TTGGAAGTTGGAAGAAGACC+AGG + chr4_4:44626553-44626572 Msa0682680:intron 45.0%
TGGAAGTTGGAAGAAGACCA+GGG + chr4_4:44626554-44626573 Msa0682680:intron 45.0%
GTGCAAACTAAATGTACCCG+TGG + chr4_4:44626716-44626735 Msa0682680:intron 45.0%
GTTTCTGCCACATGGGTAAA+TGG + chr4_4:44626746-44626765 Msa0682680:intron 45.0%
GCACCAAATAGTGACATGGA+TGG - chr4_4:44627132-44627151 None:intergenic 45.0%
TGAGGGATGTCTTCCACTTA+CGG - chr4_4:44627524-44627543 None:intergenic 45.0%
! TGGCTTGTAGTGTAAGGTGA+GGG - chr4_4:44627541-44627560 None:intergenic 45.0%
!! TTGGCTTGTAGTGTAAGGTG+AGG - chr4_4:44627542-44627561 None:intergenic 45.0%
CTTGTTAGGCTACCCCTTAT+CGG + chr4_4:44627623-44627642 Msa0682680:intron 45.0%
CCAAGACATGATTGGACATC+TGG - chr4_4:44627665-44627684 None:intergenic 45.0%
CCAGATGTCCAATCATGTCT+TGG + chr4_4:44627662-44627681 Msa0682680:intron 45.0%
CAATCATGTCTTGGGTGCAA+GGG + chr4_4:44627671-44627690 Msa0682680:intron 45.0%
AATCATGTCTTGGGTGCAAG+GGG + chr4_4:44627672-44627691 Msa0682680:intron 45.0%
CCCCATAACACCAGTTCAAA+AGG - chr4_4:44627769-44627788 None:intergenic 45.0%
!! TGGTGTTATGGGGTTCAGTT+AGG + chr4_4:44627776-44627795 Msa0682680:intron 45.0%
CACATTCACGTGTTTCTCGT+GGG - chr4_4:44627871-44627890 None:intergenic 45.0%
ACACATTCACGTGTTTCTCG+TGG - chr4_4:44627872-44627891 None:intergenic 45.0%
!! GTGCCATGCCTAAAAGCATT+TGG + chr4_4:44628146-44628165 Msa0682680:intron 45.0%
CCGTTTCAAACTGAACACAG+TGG - chr4_4:44629032-44629051 None:intergenic 45.0%
! GTTCAGTTTGAAACGGCTAC+AGG + chr4_4:44629036-44629055 Msa0682680:CDS 45.0%
CACACATGGCAACAGAAACA+AGG + chr4_4:44629162-44629181 Msa0682680:three_prime_UTR 45.0%
!!! TTTTATGTATATAAATAAAA+GGG + chr4_4:44623477-44623496 Msa0682680:intron 5.0%
!! GTTCCAACTACTGATGGTGG+TGG + chr4_4:44623714-44623733 Msa0682680:CDS 50.0%
CAAGGCATGCCTGGTACTAT+TGG + chr4_4:44623795-44623814 Msa0682680:CDS 50.0%
GAAAGGCCACCAATAGTACC+AGG - chr4_4:44623807-44623826 None:intergenic 50.0%
ACTGCGAAACACGCAGAGAA+AGG - chr4_4:44623824-44623843 None:intergenic 50.0%
GGCTGCTGCACTATCTGTTA+TGG + chr4_4:44623854-44623873 Msa0682680:CDS 50.0%
TTCCTTCTGTCACTGCCTTC+TGG + chr4_4:44623892-44623911 Msa0682680:CDS 50.0%
TACCAGAAGGCAGTGACAGA+AGG - chr4_4:44623897-44623916 None:intergenic 50.0%
GCCAATCTTTGACAACGCTC+TGG + chr4_4:44624176-44624195 Msa0682680:intron 50.0%
!! CCCAGAGCGTTGTCAAAGAT+TGG - chr4_4:44624180-44624199 None:intergenic 50.0%
! CACCAAGCGTTGCCAAATAG+CGG - chr4_4:44624525-44624544 None:intergenic 50.0%
TCAGTCAGATTCTATCCCGG+AGG - chr4_4:44625071-44625090 None:intergenic 50.0%
!! CACACCACGCGAGTTTGTTA+AGG + chr4_4:44625304-44625323 Msa0682680:intron 50.0%
! GAAGCTTGTGCCGTTGGATT+TGG + chr4_4:44625427-44625446 Msa0682680:intron 50.0%
ATGAGTGACACGAGGGTTCA+AGG + chr4_4:44626237-44626256 Msa0682680:intron 50.0%
CAATTGTAGTCCTCTCTCCC+TGG - chr4_4:44626574-44626593 None:intergenic 50.0%
AGTGGCATGTGGATTTGGAC+TGG + chr4_4:44626848-44626867 Msa0682680:intron 50.0%
CATGCAGCTCTATCACACTC+AGG - chr4_4:44627036-44627055 None:intergenic 50.0%
AGGGGTAGCCTAACAAGTCT+TGG - chr4_4:44627620-44627639 None:intergenic 50.0%
!! TGACTGGATTGGCCGATAAG+GGG - chr4_4:44627638-44627657 None:intergenic 50.0%
!! GTGACTGGATTGGCCGATAA+GGG - chr4_4:44627639-44627658 None:intergenic 50.0%
! CATCTGGAACGTGACTGGAT+TGG - chr4_4:44627649-44627668 None:intergenic 50.0%
! TTGGACATCTGGAACGTGAC+TGG - chr4_4:44627654-44627673 None:intergenic 50.0%
CCTTGCACCCAAGACATGAT+TGG - chr4_4:44627673-44627692 None:intergenic 50.0%
CCAATCATGTCTTGGGTGCA+AGG + chr4_4:44627670-44627689 Msa0682680:intron 50.0%
! GTTTGAAACGGCTACAGGCA+TGG + chr4_4:44629041-44629060 Msa0682680:CDS 50.0%
CAGGCATGGCATTCATATGC+TGG + chr4_4:44629055-44629074 Msa0682680:CDS 50.0%
! ACTTCTGGTCTTTGGCATCG+AGG + chr4_4:44629106-44629125 Msa0682680:CDS 50.0%
ACACATGGCTGTCACACACA+TGG + chr4_4:44629148-44629167 Msa0682680:three_prime_UTR 50.0%
CACCAACAACTGCACTCTGC+AGG + chr4_4:44623287-44623306 Msa0682680:five_prime_UTR 55.0%
TGCCTGCAGAGTGCAGTTGT+TGG - chr4_4:44623292-44623311 None:intergenic 55.0%
CCACCACCACCATCAGTAGT+TGG - chr4_4:44623720-44623739 None:intergenic 55.0%
!! CCAACTACTGATGGTGGTGG+TGG + chr4_4:44623717-44623736 Msa0682680:CDS 55.0%
GGCATGCCTGGTACTATTGG+TGG + chr4_4:44623798-44623817 Msa0682680:CDS 55.0%
GCGTTGCCAAATAGCGGCTA+TGG - chr4_4:44624519-44624538 None:intergenic 55.0%
AGCCGCTATTTGGCAACGCT+TGG + chr4_4:44624520-44624539 Msa0682680:intron 55.0%
!! CATGTGTCGTGTCGGTGCTA+CGG - chr4_4:44624973-44624992 None:intergenic 55.0%
CAGATTCTATCCCGGAGGCA+TGG - chr4_4:44625066-44625085 None:intergenic 55.0%
TGGAAGAAGACCAGGGAGAG+AGG + chr4_4:44626561-44626580 Msa0682680:intron 55.0%
GTGTGTCCTTTCAGCAGCTC+AGG - chr4_4:44627263-44627282 None:intergenic 55.0%
! GGGGTGTGAAGGAAAGTGTG+TGG + chr4_4:44627320-44627339 Msa0682680:intron 55.0%
GTCGGTTGAGAGTCCGCATT+AGG + chr4_4:44627471-44627490 Msa0682680:intron 55.0%
!! CGTGACTGGATTGGCCGATA+AGG - chr4_4:44627640-44627659 None:intergenic 55.0%
AGTTTCCTTGTTGCGGCTGC+TGG + chr4_4:44628634-44628653 Msa0682680:intron 55.0%
!! CTGCTGGCTTGCAGACTTTG+TGG + chr4_4:44628650-44628669 Msa0682680:CDS 55.0%
TGCAGCAGCTTGTGCATCAG+CGG + chr4_4:44628960-44628979 Msa0682680:CDS 55.0%
! GACAACGCTCTGGGCCTGTT+TGG + chr4_4:44624186-44624205 Msa0682680:intron 60.0%
! CGCTCTGGGCCTGTTTGGAT+TGG + chr4_4:44624191-44624210 Msa0682680:intron 60.0%
ATGGCAGCGCTACAGCGTAG+CGG - chr4_4:44624500-44624519 None:intergenic 60.0%
GCGCTGCCATAGCCGCTATT+TGG + chr4_4:44624510-44624529 Msa0682680:intron 60.0%
!! GTGTCGGTGCTACGGAGTGT+AGG - chr4_4:44624965-44624984 None:intergenic 60.0%
! TGACACTGACGCGTCGACAC+CGG - chr4_4:44625033-44625052 None:intergenic 60.0%
CGACGCGTCAGTGTCATCTC+CGG + chr4_4:44625037-44625056 Msa0682680:intron 60.0%
GACGCGTCAGTGTCATCTCC+GGG + chr4_4:44625038-44625057 Msa0682680:intron 60.0%
ACGCGTCAGTGTCATCTCCG+GGG + chr4_4:44625039-44625058 Msa0682680:intron 60.0%
GCAGCAGCTTGTGCATCAGC+GGG + chr4_4:44628961-44628980 Msa0682680:CDS 60.0%
! ACTGACGCGTCGACACCGGT+AGG - chr4_4:44625029-44625048 None:intergenic 65.0%
ATCTCCGGGGTCCATGCCTC+CGG + chr4_4:44625052-44625071 Msa0682680:intron 65.0%
! TATCCCGGAGGCATGGACCC+CGG - chr4_4:44625059-44625078 None:intergenic 65.0%
GCAAGCCAGCAGCCGCAACA+AGG - chr4_4:44628642-44628661 None:intergenic 65.0%
TCTCCGGGGTCCATGCCTCC+GGG + chr4_4:44625053-44625072 Msa0682680:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44623257 44629442 44623257 ID=Msa0682680;Name=Msa0682680
chr4_4 mRNA 44623257 44629442 44623257 ID=Msa0682680-mRNA-1;Parent=Msa0682680;Name=Msa0682680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|0.66|0.5|4|311|187
chr4_4 exon 44623257 44623374 44623257 ID=Msa0682680-mRNA-1:exon:10750;Parent=Msa0682680-mRNA-1
chr4_4 exon 44623604 44623913 44623604 ID=Msa0682680-mRNA-1:exon:10751;Parent=Msa0682680-mRNA-1
chr4_4 exon 44628636 44628768 44628636 ID=Msa0682680-mRNA-1:exon:10752;Parent=Msa0682680-mRNA-1
chr4_4 exon 44628940 44629442 44628940 ID=Msa0682680-mRNA-1:exon:10753;Parent=Msa0682680-mRNA-1
chr4_4 five_prime_UTR 44623257 44623374 44623257 ID=Msa0682680-mRNA-1:five_prime_utr;Parent=Msa0682680-mRNA-1
chr4_4 five_prime_UTR 44623604 44623674 44623604 ID=Msa0682680-mRNA-1:five_prime_utr;Parent=Msa0682680-mRNA-1
chr4_4 CDS 44623675 44623913 44623675 ID=Msa0682680-mRNA-1:cds;Parent=Msa0682680-mRNA-1
chr4_4 CDS 44628636 44628768 44628636 ID=Msa0682680-mRNA-1:cds;Parent=Msa0682680-mRNA-1
chr4_4 CDS 44628940 44629131 44628940 ID=Msa0682680-mRNA-1:cds;Parent=Msa0682680-mRNA-1
chr4_4 three_prime_UTR 44629132 44629442 44629132 ID=Msa0682680-mRNA-1:three_prime_utr;Parent=Msa0682680-mRNA-1
Gene Sequence

>Msa0682680

ATGAACGTTAGCCATGCTTCAATTCACCCAGTTGAAGAAGTTCCAACTACTGATGGTGGTGGTGGTGTTGCTGTTGCTGAACAAAATGTAAATGTTCCTATGGTGAGGATGAAGGATATTCAAGGCATGCCTGGTACTATTGGTGGCCTTTCTCTGCGTGTTTCGCAGTTTGTTTTTGCGGCTGCTGCACTATCTGTTATGGCTTCCACCAGTGATTTTCCTTCTGTCACTGCCTTCTGTTTCCTTGTTGCGGCTGCTGGCTTGCAGACTTTGTGGAGCATTGCATTAGCTATTACTGATGTTTATGCCATTTTGGTAAGACGATCTTTGCAGAACTACCGACTTGTCAGTTCATTTACAATTGGCGATGGGGTGACTTCGACGCTTATATTTGCAGCAGCTTGTGCATCAGCGGGCATAACAGTGCTCATTGATAATGATCTTGGTAATTGCTATGAGAACCACTGTGTTCAGTTTGAAACGGCTACAGGCATGGCATTCATATGCTGGTTCACGACAGTGCCGTCATTTCTTCTTAACTTCTGGTCTTTGGCATCGAGGTAA

Protein sequence

>Msa0682680

MNVSHASIHPVEEVPTTDGGGGVAVAEQNVNVPMVRMKDIQGMPGTIGGLSLRVSQFVFAAAALSVMASTSDFPSVTAFCFLVAAAGLQTLWSIALAITDVYAILVRRSLQNYRLVSSFTIGDGVTSTLIFAAACASAGITVLIDNDLGNCYENHCVQFETATGMAFICWFTTVPSFLLNFWSLASR*