Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658040 | XP_003629981.1 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.15e-150 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658040 | sp|Q6IDL4|P24D3_ARATH | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.10e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0658040 | 0.805996 | 1.019205e-49 | -8.615850e-47 |
| Msa0024400 | Msa0658040 | 0.812079 | 5.077868e-51 | -8.615850e-47 |
| Msa0024710 | Msa0658040 | 0.819152 | 1.349337e-52 | -8.615850e-47 |
| Msa0058160 | Msa0658040 | 0.808191 | 3.495892e-50 | -8.615850e-47 |
| Msa0072720 | Msa0658040 | 0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0089750 | Msa0658040 | 0.815103 | 1.097395e-51 | -8.615850e-47 |
| Msa0090570 | Msa0658040 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
| Msa0093850 | Msa0658040 | 0.806318 | 8.718375e-50 | -8.615850e-47 |
| Msa0106620 | Msa0658040 | 0.831988 | 1.221203e-55 | -8.615850e-47 |
| Msa0106710 | Msa0658040 | 0.842521 | 2.457590e-58 | -8.615850e-47 |
| Msa0607520 | Msa0658040 | 0.816008 | 6.898410e-52 | -8.615850e-47 |
| Msa0610250 | Msa0658040 | 0.802978 | 4.340163e-49 | -8.615850e-47 |
| Msa0618410 | Msa0658040 | 0.808406 | 3.146836e-50 | -8.615850e-47 |
| Msa0618470 | Msa0658040 | 0.852695 | 3.898998e-61 | -8.615850e-47 |
| Msa0628420 | Msa0658040 | 0.824364 | 8.403007e-54 | -8.615850e-47 |
| Msa0638480 | Msa0658040 | 0.811606 | 6.436660e-51 | -8.615850e-47 |
| Msa0647190 | Msa0658040 | 0.849788 | 2.582053e-60 | -8.615850e-47 |
| Msa0658000 | Msa0658040 | 0.826334 | 2.872660e-54 | -8.615850e-47 |
| Msa0658040 | Msa0682680 | 0.820330 | 7.262947e-53 | -8.615850e-47 |
| Msa0658040 | Msa0690310 | 0.806059 | 9.887062e-50 | -8.615850e-47 |
| Msa0658040 | Msa0693330 | 0.818227 | 2.188036e-52 | -8.615850e-47 |
| Msa0658040 | Msa0702720 | 0.818136 | 2.294727e-52 | -8.615850e-47 |
| Msa0658040 | Msa0702890 | 0.825746 | 3.962606e-54 | -8.615850e-47 |
| Msa0658040 | Msa0707250 | 0.809248 | 2.078390e-50 | -8.615850e-47 |
| Msa0658040 | Msa0755330 | 0.804025 | 2.633144e-49 | -8.615850e-47 |
| Msa0658040 | Msa0760560 | 0.800431 | 1.446098e-48 | -8.615850e-47 |
| Msa0658040 | Msa0784480 | 0.805369 | 1.379944e-49 | -8.615850e-47 |
| Msa0658040 | Msa0818060 | 0.820510 | 6.604634e-53 | -8.615850e-47 |
| Msa0658040 | Msa0822500 | 0.822608 | 2.162778e-53 | -8.615850e-47 |
| Msa0658040 | Msa0833530 | 0.818609 | 1.792520e-52 | -8.615850e-47 |
| Msa0658040 | Msa0919860 | 0.816673 | 4.899612e-52 | -8.615850e-47 |
| Msa0658040 | Msa0933760 | 0.817280 | 3.578664e-52 | -8.615850e-47 |
| Msa0658040 | Msa0934140 | 0.831128 | 1.989863e-55 | -8.615850e-47 |
| Msa0658040 | Msa0974950 | 0.817053 | 4.026287e-52 | -8.615850e-47 |
| Msa0658040 | Msa1034310 | 0.802457 | 5.560542e-49 | -8.615850e-47 |
| Msa0658040 | Msa1034500 | 0.831201 | 1.908728e-55 | -8.615850e-47 |
| Msa0658040 | Msa1047760 | 0.825140 | 5.514981e-54 | -8.615850e-47 |
| Msa0658040 | Msa1071050 | 0.810544 | 1.093508e-50 | -8.615850e-47 |
| Msa0658040 | Msa1079230 | 0.807669 | 4.514775e-50 | -8.615850e-47 |
| Msa0658040 | Msa1089450 | 0.856141 | 3.931431e-62 | -8.615850e-47 |
| Msa0658040 | Msa1095650 | 0.807391 | 5.173192e-50 | -8.615850e-47 |
| Msa0658040 | Msa1104560 | 0.807968 | 3.900098e-50 | -8.615850e-47 |
| Msa0658040 | Msa1142670 | 0.800162 | 1.639889e-48 | -8.615850e-47 |
| Msa0658040 | Msa1145810 | 0.817501 | 3.191721e-52 | -8.615850e-47 |
| Msa0658040 | Msa1163730 | 0.804515 | 2.082107e-49 | -8.615850e-47 |
| Msa0658040 | Msa1173300 | 0.803614 | 3.204745e-49 | -8.615850e-47 |
| Msa0658040 | Msa1173340 | 0.802110 | 6.552700e-49 | -8.615850e-47 |
| Msa0658040 | Msa1175200 | 0.814299 | 1.653251e-51 | -8.615850e-47 |
| Msa0658040 | Msa1179630 | 0.809042 | 2.300202e-50 | -8.615850e-47 |
| Msa0658040 | Msa1209440 | 0.806689 | 7.281243e-50 | -8.615850e-47 |
| Msa0658040 | Msa1211230 | -0.801326 | 9.493632e-49 | -8.615850e-47 |
| Msa0658040 | Msa1211420 | -0.820537 | 6.507833e-53 | -8.615850e-47 |
| Msa0658040 | Msa1219000 | 0.808932 | 2.428546e-50 | -8.615850e-47 |
| Msa0658040 | Msa1232700 | 0.815886 | 7.345367e-52 | -8.615850e-47 |
| Msa0658040 | Msa1232740 | 0.806286 | 8.853792e-50 | -8.615850e-47 |
| Msa0658040 | Msa1246360 | 0.819099 | 1.387261e-52 | -8.615850e-47 |
| Msa0658040 | Msa1254730 | 0.806220 | 9.145558e-50 | -8.615850e-47 |
| Msa0658040 | Msa1265590 | 0.826318 | 2.896737e-54 | -8.615850e-47 |
| Msa0658040 | Msa1271130 | 0.838994 | 2.066163e-57 | -8.615850e-47 |
| Msa0658040 | Msa1275590 | 0.808800 | 2.592326e-50 | -8.615850e-47 |
| Msa0658040 | Msa1307560 | 0.813603 | 2.354534e-51 | -8.615850e-47 |
| Msa0658040 | Msa1323690 | 0.803806 | 2.924610e-49 | -8.615850e-47 |
| Msa0658040 | Msa1325410 | -0.809423 | 1.906476e-50 | -8.615850e-47 |
| Msa0658040 | Msa1340200 | 0.805461 | 1.320295e-49 | -8.615850e-47 |
| Msa0658040 | Msa1341840 | 0.815741 | 7.912453e-52 | -8.615850e-47 |
| Msa0658040 | Msa1345100 | 0.846422 | 2.194147e-59 | -8.615850e-47 |
| Msa0658040 | Msa1346840 | 0.807440 | 5.048760e-50 | -8.615850e-47 |
| Msa0658040 | Msa1360980 | 0.800646 | 1.307408e-48 | -8.615850e-47 |
| Msa0658040 | Msa1373100 | 0.817471 | 3.240985e-52 | -8.615850e-47 |
| Msa0658040 | Msa1418240 | 0.816714 | 4.796757e-52 | -8.615850e-47 |
| Msa0658040 | Msa1419690 | 0.804434 | 2.164267e-49 | -8.615850e-47 |
| Msa0658040 | Msa1422950 | 0.817624 | 2.993940e-52 | -8.615850e-47 |
| Msa0658040 | Msa1425880 | 0.820977 | 5.156917e-53 | -8.615850e-47 |
| Msa0658040 | Msa1440310 | 0.815304 | 9.899051e-52 | -8.615850e-47 |
| Msa0658040 | Msa1440880 | 0.810084 | 1.374416e-50 | -8.615850e-47 |
| Msa0658040 | Msa1451160 | 0.802722 | 4.901239e-49 | -8.615850e-47 |
| Msa0658040 | Msa1452710 | 0.829823 | 4.148053e-55 | -8.615850e-47 |
| Msa0658040 | Msa1458770 | 0.801780 | 7.659868e-49 | -8.615850e-47 |
| Msa0131330 | Msa0658040 | 0.801697 | 7.966938e-49 | -8.615850e-47 |
| Msa0150860 | Msa0658040 | 0.800246 | 1.577045e-48 | -8.615850e-47 |
| Msa0160960 | Msa0658040 | 0.807355 | 5.264439e-50 | -8.615850e-47 |
| Msa0163510 | Msa0658040 | 0.813976 | 1.948889e-51 | -8.615850e-47 |
| Msa0167980 | Msa0658040 | 0.817471 | 3.242161e-52 | -8.615850e-47 |
| Msa0173800 | Msa0658040 | 0.805458 | 1.322064e-49 | -8.615850e-47 |
| Msa0183850 | Msa0658040 | 0.804415 | 2.183979e-49 | -8.615850e-47 |
| Msa0188350 | Msa0658040 | 0.813858 | 2.069324e-51 | -8.615850e-47 |
| Msa0189040 | Msa0658040 | 0.807501 | 4.901841e-50 | -8.615850e-47 |
| Msa0192480 | Msa0658040 | 0.808618 | 2.834876e-50 | -8.615850e-47 |
| Msa0199940 | Msa0658040 | 0.809643 | 1.709624e-50 | -8.615850e-47 |
| Msa0204960 | Msa0658040 | 0.837273 | 5.728523e-57 | -8.615850e-47 |
| Msa0206690 | Msa0658040 | 0.811030 | 8.583892e-51 | -8.615850e-47 |
| Msa0207040 | Msa0658040 | -0.809231 | 2.095643e-50 | -8.615850e-47 |
| Msa0207350 | Msa0658040 | 0.805715 | 1.167475e-49 | -8.615850e-47 |
| Msa0211150 | Msa0658040 | 0.813298 | 2.747177e-51 | -8.615850e-47 |
| Msa0214550 | Msa0658040 | 0.845544 | 3.800691e-59 | -8.615850e-47 |
| Msa0217700 | Msa0658040 | 0.807477 | 4.958869e-50 | -8.615850e-47 |
| Msa0221000 | Msa0658040 | 0.810615 | 1.055735e-50 | -8.615850e-47 |
| Msa0223230 | Msa0658040 | 0.816418 | 5.587926e-52 | -8.615850e-47 |
| Msa0234090 | Msa0658040 | 0.808394 | 3.164152e-50 | -8.615850e-47 |
| Msa0237210 | Msa0658040 | 0.803740 | 3.017635e-49 | -8.615850e-47 |
| Msa0237420 | Msa0658040 | 0.815260 | 1.012492e-51 | -8.615850e-47 |
| Msa0382370 | Msa0658040 | 0.815571 | 8.633552e-52 | -8.615850e-47 |
| Msa0385500 | Msa0658040 | 0.807828 | 4.176466e-50 | -8.615850e-47 |
| Msa0406770 | Msa0658040 | 0.809822 | 1.564767e-50 | -8.615850e-47 |
| Msa0428920 | Msa0658040 | 0.800570 | 1.354628e-48 | -8.615850e-47 |
| Msa0430750 | Msa0658040 | 0.800876 | 1.173203e-48 | -8.615850e-47 |
| Msa0432160 | Msa0658040 | 0.827331 | 1.659660e-54 | -8.615850e-47 |
| Msa0450400 | Msa0658040 | -0.845683 | 3.486319e-59 | -8.615850e-47 |
| Msa0476680 | Msa0658040 | 0.826141 | 3.192776e-54 | -8.615850e-47 |
| Msa0481970 | Msa0658040 | 0.807814 | 4.204920e-50 | -8.615850e-47 |
| Msa0240900 | Msa0658040 | 0.857399 | 1.675866e-62 | -8.615850e-47 |
| Msa0241140 | Msa0658040 | 0.808905 | 2.461212e-50 | -8.615850e-47 |
| Msa0249580 | Msa0658040 | 0.824878 | 6.358269e-54 | -8.615850e-47 |
| Msa0257490 | Msa0658040 | 0.846186 | 2.543580e-59 | -8.615850e-47 |
| Msa0261170 | Msa0658040 | 0.809550 | 1.790285e-50 | -8.615850e-47 |
| Msa0267790 | Msa0658040 | 0.809364 | 1.962338e-50 | -8.615850e-47 |
| Msa0274980 | Msa0658040 | 0.810750 | 9.867957e-51 | -8.615850e-47 |
| Msa0275020 | Msa0658040 | 0.807382 | 5.194365e-50 | -8.615850e-47 |
| Msa0278570 | Msa0658040 | 0.806473 | 8.088984e-50 | -8.615850e-47 |
| Msa0279850 | Msa0658040 | 0.834261 | 3.320929e-56 | -8.615850e-47 |
| Msa0281530 | Msa0658040 | 0.831942 | 1.254002e-55 | -8.615850e-47 |
| Msa0296790 | Msa0658040 | 0.812943 | 3.287188e-51 | -8.615850e-47 |
| Msa0296820 | Msa0658040 | 0.812449 | 4.215630e-51 | -8.615850e-47 |
| Msa0300270 | Msa0658040 | 0.803930 | 2.755709e-49 | -8.615850e-47 |
| Msa0300320 | Msa0658040 | 0.803593 | 3.237128e-49 | -8.615850e-47 |
| Msa0315690 | Msa0658040 | 0.815739 | 7.922689e-52 | -8.615850e-47 |
| Msa0315940 | Msa0658040 | 0.802269 | 6.078259e-49 | -8.615850e-47 |
| Msa0317970 | Msa0658040 | 0.867981 | 9.162277e-66 | -8.615850e-47 |
| Msa0318470 | Msa0658040 | 0.817298 | 3.545536e-52 | -8.615850e-47 |
| Msa0320590 | Msa0658040 | 0.806128 | 9.560689e-50 | -8.615850e-47 |
| Msa0322900 | Msa0658040 | 0.830210 | 3.338513e-55 | -8.615850e-47 |
| Msa0326480 | Msa0658040 | 0.828593 | 8.247898e-55 | -8.615850e-47 |
| Msa0326590 | Msa0658040 | 0.803216 | 3.876033e-49 | -8.615850e-47 |
| Msa0337700 | Msa0658040 | 0.814401 | 1.570033e-51 | -8.615850e-47 |
| Msa0341690 | Msa0658040 | 0.824847 | 6.464439e-54 | -8.615850e-47 |
| Msa0343850 | Msa0658040 | 0.806543 | 7.817949e-50 | -8.615850e-47 |
| Msa0357900 | Msa0658040 | 0.814098 | 1.831625e-51 | -8.615850e-47 |
| Msa0360210 | Msa0658040 | 0.807502 | 4.898826e-50 | -8.615850e-47 |
| Msa0485240 | Msa0658040 | 0.818241 | 2.171672e-52 | -8.615850e-47 |
| Msa0506670 | Msa0658040 | 0.800537 | 1.375607e-48 | -8.615850e-47 |
| Msa0518030 | Msa0658040 | 0.800799 | 1.216352e-48 | -8.615850e-47 |
| Msa0521010 | Msa0658040 | 0.827886 | 1.220872e-54 | -8.615850e-47 |
| Msa0527190 | Msa0658040 | 0.800648 | 1.305862e-48 | -8.615850e-47 |
| Msa0531250 | Msa0658040 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
| Msa0532990 | Msa0658040 | 0.807163 | 5.779763e-50 | -8.615850e-47 |
| Msa0547160 | Msa0658040 | 0.807765 | 4.307193e-50 | -8.615850e-47 |
| Msa0582480 | Msa0658040 | 0.808399 | 3.157561e-50 | -8.615850e-47 |
| Msa0588090 | Msa0658040 | 0.816962 | 4.219623e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658040 | MtrunA17_Chr8g0380801 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.05e-154 | 427 |
| Msa0658040 | MtrunA17_Chr2g0277981 | 72.642 | 212 | 51 | 3 | 1 | 211 | 1 | 206 | 5.29e-111 | 316 |
| Msa0658040 | MtrunA17_Chr3g0114751 | 65.877 | 211 | 68 | 2 | 3 | 211 | 9 | 217 | 8.07e-101 | 291 |
| Msa0658040 | MtrunA17_Chr5g0423921 | 70.213 | 188 | 53 | 2 | 24 | 211 | 28 | 212 | 2.28e-93 | 271 |
| Msa0658040 | MtrunA17_Chr8g0380821 | 98.198 | 111 | 2 | 0 | 101 | 211 | 2 | 112 | 5.77e-75 | 221 |
| Msa0658040 | MtrunA17_Chr4g0042721 | 41.919 | 198 | 102 | 3 | 22 | 211 | 24 | 216 | 5.91e-55 | 174 |
| Msa0658040 | MtrunA17_Chr6g0453521 | 40.306 | 196 | 105 | 2 | 24 | 211 | 21 | 212 | 5.31e-53 | 169 |
| Msa0658040 | MtrunA17_Chr5g0417891 | 34.579 | 214 | 126 | 4 | 8 | 211 | 10 | 219 | 2.12e-42 | 142 |
| Msa0658040 | MtrunA17_Chr7g0217911 | 43.448 | 145 | 81 | 1 | 67 | 211 | 5 | 148 | 7.35e-41 | 136 |
| Msa0658040 | MtrunA17_Chr5g0417901 | 32.524 | 206 | 134 | 4 | 8 | 211 | 12 | 214 | 3.04e-33 | 119 |
| Msa0658040 | MtrunA17_Chr5g0417931 | 33.023 | 215 | 129 | 5 | 8 | 211 | 13 | 223 | 2.35e-31 | 114 |
| Msa0658040 | MtrunA17_Chr1g0204631 | 26.486 | 185 | 127 | 4 | 27 | 207 | 27 | 206 | 1.60e-13 | 66.6 |
| Msa0658040 | MtrunA17_Chr7g0260361 | 27.397 | 146 | 101 | 2 | 62 | 207 | 12 | 152 | 1.12e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658040 | AT1G09580.1 | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.14e-106 | 305 |
| Msa0658040 | AT1G57620.1 | 65.714 | 210 | 72 | 0 | 2 | 211 | 3 | 212 | 3.42e-104 | 299 |
| Msa0658040 | AT1G21900.1 | 70.157 | 191 | 53 | 3 | 24 | 211 | 27 | 216 | 2.97e-94 | 274 |
| Msa0658040 | AT3G10780.1 | 55.000 | 200 | 84 | 3 | 17 | 211 | 19 | 217 | 2.33e-69 | 211 |
| Msa0658040 | AT1G14010.1 | 42.857 | 210 | 112 | 5 | 7 | 211 | 6 | 212 | 2.24e-52 | 168 |
| Msa0658040 | AT1G26690.1 | 39.713 | 209 | 115 | 5 | 8 | 211 | 12 | 214 | 2.96e-52 | 167 |
| Msa0658040 | AT1G69460.1 | 37.900 | 219 | 117 | 5 | 2 | 211 | 6 | 214 | 2.90e-48 | 157 |
| Msa0658040 | AT2G03290.1 | 38.384 | 198 | 114 | 3 | 20 | 211 | 18 | 213 | 8.61e-48 | 156 |
| Msa0658040 | AT3G29070.1 | 39.583 | 192 | 111 | 4 | 24 | 211 | 35 | 225 | 1.77e-44 | 148 |
| Msa0658040 | AT2G03040.1 | 35.762 | 151 | 89 | 4 | 20 | 164 | 18 | 166 | 4.55e-28 | 104 |
Find 65 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4_3:+68086148 | None:intergenic |
| TTCACACAGAATTCAGAATT+TGG | 0.212037 | 4_3:+68086337 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4_3:-68085061 | Msa0658040:CDS |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4_3:-68086148 | Msa0658040:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4_3:-68085002 | Msa0658040:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4_3:-68086215 | Msa0658040:CDS |
| TTTAGAGAGAGAAGGGGCTA+TGG | 0.349116 | 4_3:-68086289 | Msa0658040:exon |
| TCAGAAGAAGAAGCTTATAT+AGG | 0.352870 | 4_3:-68084020 | Msa0658040:exon |
| TATTTATAAACAAGATGATA+TGG | 0.359079 | 4_3:-68083813 | Msa0658040:three_prime_UTR |
| TGGTTGATTGATTGGTAGCT+AGG | 0.397666 | 4_3:+68086372 | None:intergenic |
| AATTCAGAATTTGGATCTGT+TGG | 0.402588 | 4_3:+68086346 | None:intergenic |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4_3:-68084983 | Msa0658040:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4_3:+68086170 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4_3:-68084982 | Msa0658040:CDS |
| GTTGGGTATGGTTGATTGAT+TGG | 0.420425 | 4_3:+68086364 | None:intergenic |
| CTTGAGCTGAGAAAGCTAGA+AGG | 0.424644 | 4_3:-68084317 | Msa0658040:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4_3:+68086182 | None:intergenic |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4_3:+68086176 | None:intergenic |
| ATTCAGAATTTGGATCTGTT+GGG | 0.457594 | 4_3:+68086347 | None:intergenic |
| TGGTTTAGTATTATGTCGTT+AGG | 0.458318 | 4_3:-68084094 | Msa0658040:CDS |
| TGAAAATTTGCTCTATCTGA+AGG | 0.460174 | 4_3:-68084276 | Msa0658040:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4_3:-68085149 | Msa0658040:intron |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4_3:-68085010 | Msa0658040:CDS |
| GAATTTGGATCTGTTGGGTA+TGG | 0.463938 | 4_3:+68086352 | None:intergenic |
| GAGTCTCAGCTTTGCAATTG+TGG | 0.475357 | 4_3:-68084060 | Msa0658040:CDS |
| TTGGGACTCAGTTGCTAAGA+AGG | 0.475920 | 4_3:-68084964 | Msa0658040:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4_3:+68086158 | None:intergenic |
| GGACTGCGGGTATGATCATC+GGG | 0.487606 | 4_3:+68086108 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4_3:+68085134 | None:intergenic |
| AGCAACTGAGTCCCAATCCT+TGG | 0.491833 | 4_3:+68084971 | None:intergenic |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4_3:-68085083 | Msa0658040:CDS |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4_3:+68085054 | None:intergenic |
| AAAATTGGAAACTCTGTAAG+TGG | 0.524529 | 4_3:+68083889 | None:intergenic |
| CATTACCTTGACAGCGAGAG+TGG | 0.529347 | 4_3:+68086086 | None:intergenic |
| CACAAAGAGAACACAACACA+TGG | 0.530469 | 4_3:-68085113 | Msa0658040:CDS |
| AAAGCTAGAAGGAGCTGTAG+AGG | 0.537093 | 4_3:-68084306 | Msa0658040:CDS |
| GGGACTGCGGGTATGATCAT+CGG | 0.537965 | 4_3:+68086107 | None:intergenic |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4_3:+68086213 | None:intergenic |
| GCGTGTGTTTAGAGAGAGAA+GGG | 0.546751 | 4_3:-68086296 | Msa0658040:five_prime_UTR |
| GACAGCGAGAGTGGGACTGC+GGG | 0.552072 | 4_3:+68086095 | None:intergenic |
| ATTTGCTCTATCTGAAGGGA+AGG | 0.554587 | 4_3:-68084271 | Msa0658040:intron |
| CAGTCCCACTCTCGCTGTCA+AGG | 0.555970 | 4_3:-68086091 | Msa0658040:intron |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4_3:-68084988 | Msa0658040:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4_3:+68086209 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4_3:+68086241 | None:intergenic |
| TCTGGCTGGTACTTGTAAGT+AGG | 0.563061 | 4_3:+68083924 | None:intergenic |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4_3:-68085072 | Msa0658040:CDS |
| GAAAATTTGCTCTATCTGAA+GGG | 0.566763 | 4_3:-68084275 | Msa0658040:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4_3:-68085082 | Msa0658040:CDS |
| ATCGTGAGTGAAAGAACAAA+CGG | 0.572432 | 4_3:-68084127 | Msa0658040:CDS |
| TGCGTGTGTTTAGAGAGAGA+AGG | 0.586449 | 4_3:-68086297 | Msa0658040:five_prime_UTR |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4_3:+68086183 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4_3:-68086195 | Msa0658040:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.593000 | 4_3:-68084952 | Msa0658040:intron |
| GAACAAACGGCAGAGTGGCA+TGG | 0.610011 | 4_3:-68084114 | Msa0658040:CDS |
| TGACAGCGAGAGTGGGACTG+CGG | 0.612807 | 4_3:+68086094 | None:intergenic |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.614511 | 4_3:-68084150 | Msa0658040:intron |
| ATGTCGTTAGGTATCTGCAT+TGG | 0.618449 | 4_3:-68084082 | Msa0658040:CDS |
| AAATGCATTATAATAAACAT+CGG | 0.643846 | 4_3:+68083857 | None:intergenic |
| ATTACCTTGACAGCGAGAGT+GGG | 0.651605 | 4_3:+68086087 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4_3:+68086179 | None:intergenic |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4_3:-68085030 | Msa0658040:CDS |
| TGAAAGAACAAACGGCAGAG+TGG | 0.682661 | 4_3:-68084119 | Msa0658040:CDS |
| CGTGTGTTTAGAGAGAGAAG+GGG | 0.712848 | 4_3:-68086295 | Msa0658040:five_prime_UTR |
| ACAAAGAGAACACAACACAT+GGG | 0.726810 | 4_3:-68085112 | Msa0658040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAAATGTAATCTTTT+GGG | - | chr4_3:68085345-68085364 | Msa0658040:intron | 10.0% |
| !!! | CATTATAAAATGTAATCTTT+TGG | - | chr4_3:68085344-68085363 | Msa0658040:intron | 15.0% |
| !! | AAATGCATTATAATAAACAT+CGG | + | chr4_3:68086278-68086297 | None:intergenic | 15.0% |
| !! | TATTTATAAACAAGATGATA+TGG | - | chr4_3:68086319-68086338 | Msa0658040:five_prime_UTR | 15.0% |
| !! | AATTGACGTAATTAGTAATA+TGG | - | chr4_3:68084279-68084298 | Msa0658040:CDS | 20.0% |
| !! | ATCCAAAAACAAAACAAAAT+AGG | + | chr4_3:68084537-68084556 | None:intergenic | 20.0% |
| !!! | CATTGTTATATGTCTATTTT+TGG | - | chr4_3:68084581-68084600 | Msa0658040:intron | 20.0% |
| !!! | CTGATAACAATTTGTTAAAA+TGG | - | chr4_3:68084940-68084959 | Msa0658040:intron | 20.0% |
| !!! | TAACTTGTAATGTTTTCTTT+AGG | - | chr4_3:68084967-68084986 | Msa0658040:CDS | 20.0% |
| !!! | TTGGAAAATATTTCTGTTTA+GGG | - | chr4_3:68085484-68085503 | Msa0658040:intron | 20.0% |
| !! | AGAGATATAGATTTAAATTC+AGG | + | chr4_3:68085720-68085739 | None:intergenic | 20.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | + | chr4_3:68084093-68084112 | None:intergenic | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | - | chr4_3:68084091-68084110 | Msa0658040:CDS | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | - | chr4_3:68084353-68084372 | Msa0658040:intron | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | + | chr4_3:68084445-68084464 | None:intergenic | 25.0% |
| !!! | GACCTATTTTGTTTTGTTTT+TGG | - | chr4_3:68084532-68084551 | Msa0658040:intron | 25.0% |
| ! | TTTGGATATATTAATCGATG+AGG | - | chr4_3:68084550-68084569 | Msa0658040:intron | 25.0% |
| ! | TTGGATATATTAATCGATGA+GGG | - | chr4_3:68084551-68084570 | Msa0658040:intron | 25.0% |
| ! | ACAGAGTAAAGATCAATTTA+TGG | + | chr4_3:68084648-68084667 | None:intergenic | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | - | chr4_3:68084721-68084740 | Msa0658040:intron | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | - | chr4_3:68084899-68084918 | Msa0658040:intron | 25.0% |
| ! | AAGTATGAAAGAATCCAAAT+CGG | + | chr4_3:68085389-68085408 | None:intergenic | 25.0% |
| !! | GTTGGAAAATATTTCTGTTT+AGG | - | chr4_3:68085483-68085502 | Msa0658040:intron | 25.0% |
| ! | ATGAATAATTGATTATGCTG+AGG | - | chr4_3:68085593-68085612 | Msa0658040:intron | 25.0% |
| ! | TATAGATTTAAATTCAGGTG+CGG | + | chr4_3:68085715-68085734 | None:intergenic | 25.0% |
| ! | GTATCAATCACATATAGAAA+CGG | + | chr4_3:68085782-68085801 | None:intergenic | 25.0% |
| ! | AAGTGGTAACAAAAAAATTC+TGG | + | chr4_3:68086229-68086248 | None:intergenic | 25.0% |
| ATTCAGAATTTGGATCTGTT+GGG | + | chr4_3:68083788-68083807 | None:intergenic | 30.0% | |
| AATTCAGAATTTGGATCTGT+TGG | + | chr4_3:68083789-68083808 | None:intergenic | 30.0% | |
| TTCACACAGAATTCAGAATT+TGG | + | chr4_3:68083798-68083817 | None:intergenic | 30.0% | |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | - | chr4_3:68084090-68084109 | Msa0658040:CDS | 30.0% |
| CCCACGAAATTAAAATGAAA+AGG | + | chr4_3:68084094-68084113 | None:intergenic | 30.0% | |
| !! | TTCCATTGTTCTGATTTGTT+TGG | - | chr4_3:68084154-68084173 | Msa0658040:intron | 30.0% |
| AACCAAACAAATCAGAACAA+TGG | + | chr4_3:68084159-68084178 | None:intergenic | 30.0% | |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | - | chr4_3:68084162-68084181 | Msa0658040:intron | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | - | chr4_3:68084163-68084182 | Msa0658040:intron | 30.0% |
| ! | TTGACATTGTTCTTCTGTTT+TGG | - | chr4_3:68084198-68084217 | Msa0658040:intron | 30.0% |
| GACGTAATTAGTAATATGGA+TGG | - | chr4_3:68084283-68084302 | Msa0658040:CDS | 30.0% | |
| ! | ATGCATTTTTATATTGTCCG+TGG | - | chr4_3:68084490-68084509 | Msa0658040:intron | 30.0% |
| TGATGAAGATTGTTTCCATA+TGG | + | chr4_3:68085001-68085020 | None:intergenic | 30.0% | |
| AAGATTGAGGTAAGTAGATA+TGG | - | chr4_3:68085193-68085212 | Msa0658040:intron | 30.0% | |
| ATTAATTGTCAGCGATTGAA+AGG | + | chr4_3:68085232-68085251 | None:intergenic | 30.0% | |
| !!! | GTTCAAGCACTGTTTTAAAA+TGG | - | chr4_3:68085285-68085304 | Msa0658040:intron | 30.0% |
| AGATCCATCATTATTGATGT+CGG | + | chr4_3:68085452-68085471 | None:intergenic | 30.0% | |
| TGGATCTTCTTACTATATGT+TGG | - | chr4_3:68085465-68085484 | Msa0658040:intron | 30.0% | |
| ATGGTTTACTACATTTCTTG+AGG | + | chr4_3:68085623-68085642 | None:intergenic | 30.0% | |
| ! | ATAGTCTTGAGATGGAAAAA+TGG | + | chr4_3:68085642-68085661 | None:intergenic | 30.0% |
| ! | AAGTAACTATAGTCTTGAGA+TGG | + | chr4_3:68085650-68085669 | None:intergenic | 30.0% |
| TATATCTCTTCTGTTTGCTT+TGG | - | chr4_3:68085731-68085750 | Msa0658040:intron | 30.0% | |
| TCTATATGTGATTGATACCT+AGG | - | chr4_3:68085784-68085803 | Msa0658040:intron | 30.0% | |
| CTATATGTGATTGATACCTA+GGG | - | chr4_3:68085785-68085804 | Msa0658040:intron | 30.0% | |
| ! | ATAGAGCAAATTTTCATGGA+TGG | + | chr4_3:68085852-68085871 | None:intergenic | 30.0% |
| ! | TCAGATAGAGCAAATTTTCA+TGG | + | chr4_3:68085856-68085875 | None:intergenic | 30.0% |
| ! | TGAAAATTTGCTCTATCTGA+AGG | - | chr4_3:68085856-68085875 | Msa0658040:intron | 30.0% |
| ! | GAAAATTTGCTCTATCTGAA+GGG | - | chr4_3:68085857-68085876 | Msa0658040:intron | 30.0% |
| !!! | ATATTTTGTGCTGTTTGTTC+AGG | - | chr4_3:68085967-68085986 | Msa0658040:intron | 30.0% |
| !!! | TATTTTGTGCTGTTTGTTCA+GGG | - | chr4_3:68085968-68085987 | Msa0658040:intron | 30.0% |
| TGGTTTAGTATTATGTCGTT+AGG | - | chr4_3:68086038-68086057 | Msa0658040:intron | 30.0% | |
| TCAGAAGAAGAAGCTTATAT+AGG | - | chr4_3:68086112-68086131 | Msa0658040:CDS | 30.0% | |
| AAAATTGGAAACTCTGTAAG+TGG | + | chr4_3:68086246-68086265 | None:intergenic | 30.0% | |
| CATCGGTAGATAAGAAAAAT+TGG | + | chr4_3:68086261-68086280 | None:intergenic | 30.0% | |
| GACGTTATTCTGGATTTCTT+CGG | + | chr4_3:68083977-68083996 | None:intergenic | 35.0% | |
| !!! | GTTCTTCTGTTTTGGTCAAT+TGG | - | chr4_3:68084206-68084225 | Msa0658040:intron | 35.0% |
| !!! | TTCTGTTTTGGTCAATTGGT+GGG | - | chr4_3:68084210-68084229 | Msa0658040:intron | 35.0% |
| ! | TTTTTATATTGTCCGTGGTG+TGG | - | chr4_3:68084495-68084514 | Msa0658040:intron | 35.0% |
| ACATGTGGATTCGATTTAGT+CGG | - | chr4_3:68084771-68084790 | Msa0658040:intron | 35.0% | |
| TCATGACTTTCAGATCGTAT+CGG | + | chr4_3:68084862-68084881 | None:intergenic | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | - | chr4_3:68084983-68085002 | Msa0658040:CDS | 35.0% | |
| ACAAAGAGAACACAACACAT+GGG | - | chr4_3:68085020-68085039 | Msa0658040:CDS | 35.0% | |
| ! | CAATTCCAATTTTCCAGTCA+AGG | + | chr4_3:68085138-68085157 | None:intergenic | 35.0% |
| CGCTGACAATTAATTACTCA+AGG | - | chr4_3:68085238-68085257 | Msa0658040:intron | 35.0% | |
| GCAAGAAAATTGATCCGATT+TGG | - | chr4_3:68085372-68085391 | Msa0658040:intron | 35.0% | |
| GATCCATCATTATTGATGTC+GGG | + | chr4_3:68085451-68085470 | None:intergenic | 35.0% | |
| TTTCATGTTACACGAGAGAA+TGG | + | chr4_3:68085678-68085697 | None:intergenic | 35.0% | |
| TCTCGTGTAACATGAAAGTA+AGG | - | chr4_3:68085681-68085700 | Msa0658040:intron | 35.0% | |
| ATCGTGAGTGAAAGAACAAA+CGG | - | chr4_3:68086005-68086024 | Msa0658040:intron | 35.0% | |
| GGTAACAAAAAAATTCTGGC+TGG | + | chr4_3:68086225-68086244 | None:intergenic | 35.0% | |
| ! | TGGTTGATTGATTGGTAGCT+AGG | + | chr4_3:68083763-68083782 | None:intergenic | 40.0% |
| GTTGGGTATGGTTGATTGAT+TGG | + | chr4_3:68083771-68083790 | None:intergenic | 40.0% | |
| GAATTTGGATCTGTTGGGTA+TGG | + | chr4_3:68083783-68083802 | None:intergenic | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | + | chr4_3:68083894-68083913 | None:intergenic | 40.0% | |
| !!! | CTTCTGTTTTGGTCAATTGG+TGG | - | chr4_3:68084209-68084228 | Msa0658040:intron | 40.0% |
| ! | TGTCCAGTTCTGTCTTTTGA+GGG | - | chr4_3:68084677-68084696 | Msa0658040:intron | 40.0% |
| TTATACCGCTCACATACATG+TGG | - | chr4_3:68084756-68084775 | Msa0658040:intron | 40.0% | |
| TACGAAAATGTCTTGCACGT+TGG | - | chr4_3:68084800-68084819 | Msa0658040:intron | 40.0% | |
| CACAAAGAGAACACAACACA+TGG | - | chr4_3:68085019-68085038 | Msa0658040:CDS | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | - | chr4_3:68085050-68085069 | Msa0658040:CDS | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | - | chr4_3:68085130-68085149 | Msa0658040:CDS | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | - | chr4_3:68085144-68085163 | Msa0658040:CDS | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | - | chr4_3:68085180-68085199 | Msa0658040:intron | 40.0% | |
| GTACCCGACATCAATAATGA+TGG | - | chr4_3:68085445-68085464 | Msa0658040:intron | 40.0% | |
| ATTTGCTCTATCTGAAGGGA+AGG | - | chr4_3:68085861-68085880 | Msa0658040:intron | 40.0% | |
| CTAGAAGTTGTTGACGTGAT+TGG | + | chr4_3:68085895-68085914 | None:intergenic | 40.0% | |
| ATGTCGTTAGGTATCTGCAT+TGG | - | chr4_3:68086050-68086069 | Msa0658040:intron | 40.0% | |
| TGCGTGTGTTTAGAGAGAGA+AGG | - | chr4_3:68083835-68083854 | Msa0658040:three_prime_UTR | 45.0% | |
| GCGTGTGTTTAGAGAGAGAA+GGG | - | chr4_3:68083836-68083855 | Msa0658040:three_prime_UTR | 45.0% | |
| CGTGTGTTTAGAGAGAGAAG+GGG | - | chr4_3:68083837-68083856 | Msa0658040:three_prime_UTR | 45.0% | |
| TTTAGAGAGAGAAGGGGCTA+TGG | - | chr4_3:68083843-68083862 | Msa0658040:three_prime_UTR | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | + | chr4_3:68083965-68083984 | None:intergenic | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | + | chr4_3:68083987-68084006 | None:intergenic | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | - | chr4_3:68083984-68084003 | Msa0658040:three_prime_UTR | 45.0% |
| ATTACCTTGACAGCGAGAGT+GGG | + | chr4_3:68084048-68084067 | None:intergenic | 45.0% | |
| AGTACTATGACACCACACCA+CGG | + | chr4_3:68084510-68084529 | None:intergenic | 45.0% | |
| ! | CTGTCCAGTTCTGTCTTTTG+AGG | - | chr4_3:68084676-68084695 | Msa0658040:intron | 45.0% |
| ! | GTCCAGTTCTGTCTTTTGAG+GGG | - | chr4_3:68084678-68084697 | Msa0658040:intron | 45.0% |
| ATCCCCTCAAAAGACAGAAC+TGG | + | chr4_3:68084683-68084702 | None:intergenic | 45.0% | |
| CGAATCCACATGTATGTGAG+CGG | + | chr4_3:68084764-68084783 | None:intergenic | 45.0% | |
| TGTGGATTCGATTTAGTCGG+TGG | - | chr4_3:68084774-68084793 | Msa0658040:intron | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | - | chr4_3:68085049-68085068 | Msa0658040:CDS | 45.0% | |
| ! | GAACTACCTGGCATGCTTTT+GGG | - | chr4_3:68085072-68085091 | Msa0658040:CDS | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | - | chr4_3:68085080-68085099 | Msa0658040:CDS | 45.0% |
| AGGTTAGTGTGAACCTTGAC+TGG | - | chr4_3:68085122-68085141 | Msa0658040:CDS | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | - | chr4_3:68085149-68085168 | Msa0658040:intron | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | - | chr4_3:68085150-68085169 | Msa0658040:intron | 45.0% | |
| TTGGGACTCAGTTGCTAAGA+AGG | - | chr4_3:68085168-68085187 | Msa0658040:intron | 45.0% | |
| CTTGAGCTGAGAAAGCTAGA+AGG | - | chr4_3:68085815-68085834 | Msa0658040:intron | 45.0% | |
| AAAGCTAGAAGGAGCTGTAG+AGG | - | chr4_3:68085826-68085845 | Msa0658040:intron | 45.0% | |
| TGAAAGAACAAACGGCAGAG+TGG | - | chr4_3:68086013-68086032 | Msa0658040:intron | 45.0% | |
| GAGTCTCAGCTTTGCAATTG+TGG | - | chr4_3:68086072-68086091 | Msa0658040:intron | 45.0% | |
| TCTGGCTGGTACTTGTAAGT+AGG | + | chr4_3:68086211-68086230 | None:intergenic | 45.0% | |
| TACCTTCCACACTCGCTATC+TGG | - | chr4_3:68083917-68083936 | Msa0658040:three_prime_UTR | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | + | chr4_3:68083959-68083978 | None:intergenic | 50.0% | |
| CATTACCTTGACAGCGAGAG+TGG | + | chr4_3:68084049-68084068 | None:intergenic | 50.0% | |
| AGATCAAACCTACGCTGCTC+AGG | + | chr4_3:68084609-68084628 | None:intergenic | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | - | chr4_3:68085060-68085079 | Msa0658040:CDS | 50.0% | |
| ! | GGAACTACCTGGCATGCTTT+TGG | - | chr4_3:68085071-68085090 | Msa0658040:CDS | 50.0% |
| ! | CATCTACCCAAAAGCATGCC+AGG | + | chr4_3:68085081-68085100 | None:intergenic | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | - | chr4_3:68085079-68085098 | Msa0658040:CDS | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | - | chr4_3:68085081-68085100 | Msa0658040:CDS | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | - | chr4_3:68085082-68085101 | Msa0658040:CDS | 50.0% |
| TGGGTAGATGGGGGTAATCA+AGG | - | chr4_3:68085091-68085110 | Msa0658040:CDS | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | - | chr4_3:68085094-68085113 | Msa0658040:CDS | 50.0% | |
| AGCAACTGAGTCCCAATCCT+TGG | + | chr4_3:68085164-68085183 | None:intergenic | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | - | chr4_3:68085982-68086001 | Msa0658040:intron | 50.0% | |
| AGCCAGATAGCGAGTGTGGA+AGG | + | chr4_3:68083922-68083941 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | + | chr4_3:68083926-68083945 | None:intergenic | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | - | chr4_3:68083937-68083956 | Msa0658040:three_prime_UTR | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | + | chr4_3:68083952-68083971 | None:intergenic | 55.0% |
| GGACTGCGGGTATGATCATC+GGG | + | chr4_3:68084027-68084046 | None:intergenic | 55.0% | |
| GGGACTGCGGGTATGATCAT+CGG | + | chr4_3:68084028-68084047 | None:intergenic | 55.0% | |
| !!! | TTTTGGAGCCTGAGCAGCGT+AGG | - | chr4_3:68084598-68084617 | Msa0658040:intron | 55.0% |
| GGGTAATCAAGGAGGTCACG+AGG | - | chr4_3:68085102-68085121 | Msa0658040:CDS | 55.0% | |
| CAGCTCAAGCTCAACTCCCT+AGG | + | chr4_3:68085804-68085823 | None:intergenic | 55.0% | |
| GAACAAACGGCAGAGTGGCA+TGG | - | chr4_3:68086018-68086037 | Msa0658040:intron | 55.0% | |
| !! | GACGCATTTGGTACCGGTGG+TGG | + | chr4_3:68083953-68083972 | None:intergenic | 60.0% |
| ! | GGAGACGCATTTGGTACCGG+TGG | + | chr4_3:68083956-68083975 | None:intergenic | 60.0% |
| TGACAGCGAGAGTGGGACTG+CGG | + | chr4_3:68084041-68084060 | None:intergenic | 60.0% | |
| CAGTCCCACTCTCGCTGTCA+AGG | - | chr4_3:68084041-68084060 | Msa0658040:CDS | 60.0% | |
| GACAGCGAGAGTGGGACTGC+GGG | + | chr4_3:68084040-68084059 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 68083731 | 68086423 | 68083731 | ID=Msa0658040;Name=Msa0658040 |
| chr4_3 | mRNA | 68083731 | 68086423 | 68083731 | ID=Msa0658040-mRNA-1;Parent=Msa0658040;Name=Msa0658040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=131|1|1|1|1|1|4|290|211 |
| chr4_3 | exon | 68083731 | 68084165 | 68083731 | ID=Msa0658040-mRNA-1:exon:19657;Parent=Msa0658040-mRNA-1 |
| chr4_3 | exon | 68084272 | 68084348 | 68084272 | ID=Msa0658040-mRNA-1:exon:19656;Parent=Msa0658040-mRNA-1 |
| chr4_3 | exon | 68084953 | 68085165 | 68084953 | ID=Msa0658040-mRNA-1:exon:19655;Parent=Msa0658040-mRNA-1 |
| chr4_3 | exon | 68086092 | 68086423 | 68086092 | ID=Msa0658040-mRNA-1:exon:19654;Parent=Msa0658040-mRNA-1 |
| chr4_3 | five_prime_UTR | 68086293 | 68086423 | 68086293 | ID=Msa0658040-mRNA-1:five_prime_utr;Parent=Msa0658040-mRNA-1 |
| chr4_3 | CDS | 68086092 | 68086292 | 68086092 | ID=Msa0658040-mRNA-1:cds;Parent=Msa0658040-mRNA-1 |
| chr4_3 | CDS | 68084953 | 68085165 | 68084953 | ID=Msa0658040-mRNA-1:cds;Parent=Msa0658040-mRNA-1 |
| chr4_3 | CDS | 68084272 | 68084348 | 68084272 | ID=Msa0658040-mRNA-1:cds;Parent=Msa0658040-mRNA-1 |
| chr4_3 | CDS | 68084021 | 68084165 | 68084021 | ID=Msa0658040-mRNA-1:cds;Parent=Msa0658040-mRNA-1 |
| chr4_3 | three_prime_UTR | 68083731 | 68084020 | 68083731 | ID=Msa0658040-mRNA-1:three_prime_utr;Parent=Msa0658040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
