AlfalfaGEDB | Msa0010890

M. sativa cultivar zhongmu-4 / Msa0010890

KEGG: K00058
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF00389.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010890	sp\|O04130\|SERA2_ARATH	75.962	624	137	4	16	628	3	624	0.0	957

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010890	Msa0012080	0.800797	1.217484e-48	-8.615850e-47
Msa0010890	Msa0017510	0.803823	2.900485e-49	-8.615850e-47
Msa0010890	Msa0034270	0.822467	2.332529e-53	-8.615850e-47
Msa0010890	Msa0047030	0.802546	5.328842e-49	-8.615850e-47
Msa0010890	Msa0054480	0.840495	8.401351e-58	-8.615850e-47
Msa0010890	Msa0061380	0.804571	2.026125e-49	-8.615850e-47
Msa0010890	Msa0063890	0.822724	2.032332e-53	-8.615850e-47
Msa0010890	Msa0070700	0.814004	1.920986e-51	-8.615850e-47
Msa0010890	Msa0100090	0.801558	8.509329e-49	-8.615850e-47
Msa0010890	Msa0101440	0.823974	1.037703e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010890	MtrunA17_Chr4g0000511	96.530	634	12	3	1	628	1	630	0.0	1225
Msa0010890	MtrunA17_Chr1g0208141	77.939	553	122	0	76	628	45	597	0.0	902
Msa0010890	MtrunA17_Chr1g0210971	34.564	298	172	7	115	390	50	346	1.96e-32	129
Msa0010890	MtrunA17_Chr3g0077771	31.890	254	153	5	149	385	117	367	2.39e-30	123
Msa0010890	MtrunA17_Chr4g0004721	29.412	255	171	4	149	402	68	314	5.32e-29	117
Msa0010890	MtrunA17_Chr4g0004711	29.183	257	167	5	150	402	68	313	5.94e-28	114
Msa0010890	MtrunA17_Chr4g0004681	27.907	258	172	4	149	406	67	310	8.69e-27	111
Msa0010890	MtrunA17_Chr6g0450811	30.081	246	168	3	150	391	122	367	4.67e-26	110
Msa0010890	MtrunA17_Chr8g0351111	29.811	265	167	6	150	409	76	326	2.73e-23	101
Msa0010890	MtrunA17_Chr4g0004741	31.154	260	164	6	149	406	67	313	4.26e-22	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010890	AT1G17745.1	75.962	624	137	4	16	628	3	624	0.0	957
Msa0010890	AT1G17745.2	72.657	651	138	6	16	628	3	651	0.0	937
Msa0010890	AT4G34200.1	77.034	553	127	0	76	628	51	603	0.0	892
Msa0010890	AT3G19480.1	76.427	543	128	0	86	628	46	588	0.0	869
Msa0010890	AT1G68010.1	34.564	298	172	7	115	390	50	346	1.14e-31	127
Msa0010890	AT1G68010.3	34.737	285	163	7	115	377	50	333	7.14e-31	124
Msa0010890	AT1G68010.2	34.783	299	171	8	115	390	50	347	3.54e-30	123
Msa0010890	AT1G79870.1	30.980	255	165	6	150	402	68	313	1.87e-27	113
Msa0010890	AT5G14780.2	31.532	222	148	3	156	373	112	333	4.10e-27	114
Msa0010890	AT5G14780.3	31.532	222	148	3	156	373	100	321	4.53e-27	113

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Find 162 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACCTGTGCTTCTT+TGG	0.221839	1_1:-16456174	None:intergenic
AAAAGGCCTTCGCATAAGCG+AGG	0.668434	1_1:+16456876	Msa0010890:CDS
AAAGGAAAGTTGAAAGTTGT+TGG	0.405100	1_1:+16454626	Msa0010890:CDS
AACAACAGAAACAACGTTGT+TGG	0.441735	1_1:-16454405	None:intergenic
AACACAAACTCCTCAATAGC+AGG	0.528948	1_1:-16457279	None:intergenic
AACCTGTGCTTCTTTGGTGC+TGG	0.432833	1_1:-16456168	None:intergenic
AACTAGTGCAATTATTTGAA+AGG	0.474444	1_1:+16457645	Msa0010890:three_prime_UTR
AACTGCTGTCAATGCTCCTA+TGG	0.495186	1_1:+16456355	Msa0010890:CDS
AACTTACTGTCTTTGGCTGG+AGG	0.538388	1_1:-16456104	None:intergenic
AAGAAAAGGTTTAGAGGGAA+GGG	0.500168	1_1:-16454098	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGAAGAAAAGGTTTAGA+GGG	-	chr1_1:16454106-16454125	None:intergenic	30.0%
AGATAGAAGAAAAGGTTTAG+AGG	-	chr1_1:16454107-16454126	None:intergenic	30.0%
ATGAGAGAGTTTAATGTTGT+TGG	-	chr1_1:16454309-16454328	None:intergenic	30.0%
AAATGAAAAACCAACGATCT+TGG	+	chr1_1:16454436-16454455	Msa0010890:CDS	30.0%
AAAGGAAAGTTGAAAGTTGT+TGG	+	chr1_1:16454626-16454645	Msa0010890:CDS	30.0%
TGGGAAAACATTAGCAATAA+TGG	+	chr1_1:16455387-16455406	Msa0010890:CDS	30.0%
GGGAAAACATTAGCAATAAT+GGG	+	chr1_1:16455388-16455407	Msa0010890:CDS	30.0%
TCAAGGAACATGTAAACTAT+AGG	-	chr1_1:16455829-16455848	None:intergenic	30.0%
GCGATTTCCAAAATAGTAAA+TGG	-	chr1_1:16455856-16455875	None:intergenic	30.0%
GAAGAAGAAAAAATGCAAGT+AGG	-	chr1_1:16456210-16456229	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	16453941	16457825	16453941	ID=Msa0010890;Name=Msa0010890
chr1_1	mRNA	16453941	16457825	16453941	ID=Msa0010890-mRNA-1;Parent=Msa0010890;Name=Msa0010890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=247\|1\|1\|1\|1\|1\|5\|511\|628
chr1_1	exon	16453941	16454818	16453941	ID=Msa0010890-mRNA-1:exon:5995;Parent=Msa0010890-mRNA-1
chr1_1	exon	16455347	16455723	16455347	ID=Msa0010890-mRNA-1:exon:5996;Parent=Msa0010890-mRNA-1
chr1_1	exon	16456077	16456187	16456077	ID=Msa0010890-mRNA-1:exon:5997;Parent=Msa0010890-mRNA-1
chr1_1	exon	16456293	16456388	16456293	ID=Msa0010890-mRNA-1:exon:5998;Parent=Msa0010890-mRNA-1
chr1_1	exon	16456643	16457825	16456643	ID=Msa0010890-mRNA-1:exon:5999;Parent=Msa0010890-mRNA-1
chr1_1	five_prime_UTR	16453941	16454187	16453941	ID=Msa0010890-mRNA-1:five_prime_utr;Parent=Msa0010890-mRNA-1
chr1_1	CDS	16454188	16454818	16454188	ID=Msa0010890-mRNA-1:cds;Parent=Msa0010890-mRNA-1
chr1_1	CDS	16455347	16455723	16455347	ID=Msa0010890-mRNA-1:cds;Parent=Msa0010890-mRNA-1
chr1_1	CDS	16456077	16456187	16456077	ID=Msa0010890-mRNA-1:cds;Parent=Msa0010890-mRNA-1
chr1_1	CDS	16456293	16456388	16456293	ID=Msa0010890-mRNA-1:cds;Parent=Msa0010890-mRNA-1
chr1_1	CDS	16456643	16457314	16456643	ID=Msa0010890-mRNA-1:cds;Parent=Msa0010890-mRNA-1
chr1_1	three_prime_UTR	16457315	16457825	16457315	ID=Msa0010890-mRNA-1:three_prime_utr;Parent=Msa0010890-mRNA-1

Gene Sequence

>Msa0010890

ATGTCTTCCTCTTCTTGTACCAACTCAATTCTTCCTTCACCTATCTTCTCTTCTGAAACCAAATCTTCAAAATCCTCTAATCTCTCATTCCTTAACTCCAACACTTTTGGAATCATTACCAACAACATTAAACTCTCTCATGCTAACTCTCAACAACGTTGTTTTGTGGTCAACAGTGTTTTAAAAACCGTTGACCAAACAAAACAAACAACTCAAACCAACAACGTTGTTTCTGTTGTTAACGATGAAAATGAAAAACCAACGATCTTGGTCTCCGAGAAACTCGGAGAAGCAGGCTTACAAGTTTTAAGACAATTAGGACATGTGGAATGTGCTTATGATCTTTCACCAGAAGACCTATGCAAGAAGATCTCAAGCTGTGATGCTTTGATTGTGAGAAGCGGTACGAAAGTCACAAGACAAGTGTTTGAAGCAGGGAAAGGAAAGTTGAAAGTTGTTGGTAGAGCTGGTGTTGGGATTGATAATGTGGATCTACAAGCTGCTACTGAATTTGGTTGTCTTGTTGTGAATGCTCCTACTGCTAATACTATTGCTGCTGCTGAACATGGGATTGCTCTTCTTGCTGCTATGGCTCGTAATGTTTCTCAGGCTGATGCTTCCCTTAAAGCCGGAAAATGGCTGAGGAACAAGTATGTTGGAGTGTCTATGGTTGGGAAAACATTAGCAATAATGGGATTTGGAAAAGTTGGATCTGAAGTGGCAAGGCGTGCAAAAGGATTAGGAATGAATGTGATTGCTCATGACCCTTATGCTCCAGCTGATAGAGCACGTGCTGTTGGTGTCGAATTAGTTTCATTTGATCAAGCAATCTCAACCGCTGATTTCATCTCACTTCACATGCCTCTCACTCCAACTACTAACAAAGTTTTCAATGACAATACTTTTGCTAAGATGAAGAAGGGTGTGAGAATCATCAATGTTGCTAGAGGTGGTGTTATTGATGAAGATGCTTTAGTCAAAGCTCTTGATAGTGGAATTGTTGCTCAGGCAGCTCTTGATGTGTTCACTGAGGAGCCTCCAGCCAAAGACAGTAAGTTAGTGCAACATGAGAATGTGATTGCTACTCCTCATCTTGGAGCCAGCACCAAAGAAGCACAGGAGGGTGTGGCTATTGAAATAGCAGAGGCTGTTGTTGGTGCATTGAATGGTGAACTTTCAGCAACTGCTGTCAATGCTCCTATGGTTGCTCCTGAGGTATTATCAGAATTGGCTCCATATGTTGTGCTGGCTGAGAAGCTAGGAAGGTTAGCTGTGCAGTTGGTATCCGGAGGAAGTGGAATCCAATCTGTAAAAGTGGTTTACCGATCGGCCAGGGGTCCCGATGACCTAGACACCAGACTTCTTCGAGCCATGATCACAAAAGGCATTATTGAACCAATATCAAACACAATTGTCAACCTTGTAAATGCTGATTACATCGCAAAGCAAAAAGGCCTTCGCATAAGCGAGGAAAGAGTAGTGGTTGATGCGTCTCCTGAGCTACCTGTTGAGTCAATCCAGATACAAATATCCAATGTGGAGTCCAAATTCGCAAGTGCTGTATCAGAGACTGGTCAGATAAGCATTGACGGAAAAGTGAAGTATGGTACACCACACCTTACATGTGTGGGATCTTTTGGTGTGGATGTGAGCTTAGAAGGGAATCTGATTTTGTGCAGACAGACTGATCAGCCTGGGATGATTGGTAAAGTCGGAAACATATTAGGCGAGAAAAATGTGAATGTGAGCTTTATGAGCGTCGGAAGAACATCGCGTAGGAAGAAAGCGCTTATGGCTATTGGCGTCGATGAAGAGCCAAATAAGGAAGCTCTTGAGAATATTGGAGCTGTGCCTGCTATTGAGGAGTTTGTGTTTCTCAAGCTTTAA

Protein sequence

>Msa0010890

MSSSSCTNSILPSPIFSSETKSSKSSNLSFLNSNTFGIITNNIKLSHANSQQRCFVVNSVLKTVDQTKQTTQTNNVVSVVNDENEKPTILVSEKLGEAGLQVLRQLGHVECAYDLSPEDLCKKISSCDALIVRSGTKVTRQVFEAGKGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLAAMARNVSQADASLKAGKWLRNKYVGVSMVGKTLAIMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAVGVELVSFDQAISTADFISLHMPLTPTTNKVFNDNTFAKMKKGVRIINVARGGVIDEDALVKALDSGIVAQAALDVFTEEPPAKDSKLVQHENVIATPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVAPEVLSELAPYVVLAEKLGRLAVQLVSGGSGIQSVKVVYRSARGPDDLDTRLLRAMITKGIIEPISNTIVNLVNADYIAKQKGLRISEERVVVDASPELPVESIQIQISNVESKFASAVSETGQISIDGKVKYGTPHLTCVGSFGVDVSLEGNLILCRQTDQPGMIGKVGNILGEKNVNVSFMSVGRTSRRKKALMAIGVDEEPNKEALENIGAVPAIEEFVFLKL*