Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792420 | XP_003627978.1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 29 | 143 | 5.07e-80 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792420 | sp|Q9SGA6|RS191_ARATH | 82.609 | 115 | 20 | 0 | 1 | 115 | 29 | 143 | 1.39e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792420 | B7FHE5 | 99.130 | 115 | 1 | 0 | 1 | 115 | 29 | 143 | 2.42e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0792420 | 0.839914 | 1.191286e-57 | -8.615850e-47 |
| Msa0002790 | Msa0792420 | 0.836303 | 1.012554e-56 | -8.615850e-47 |
| Msa0032780 | Msa0792420 | 0.813953 | 1.971451e-51 | -8.615850e-47 |
| Msa0045730 | Msa0792420 | 0.838676 | 2.496078e-57 | -8.615850e-47 |
| Msa0049690 | Msa0792420 | 0.839476 | 1.549007e-57 | -8.615850e-47 |
| Msa0100420 | Msa0792420 | 0.802857 | 4.597143e-49 | -8.615850e-47 |
| Msa0116130 | Msa0792420 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
| Msa0116670 | Msa0792420 | 0.802784 | 4.759627e-49 | -8.615850e-47 |
| Msa0604960 | Msa0792420 | 0.850033 | 2.205856e-60 | -8.615850e-47 |
| Msa0622750 | Msa0792420 | 0.855108 | 7.868385e-62 | -8.615850e-47 |
| Msa0623200 | Msa0792420 | 0.825830 | 3.785138e-54 | -8.615850e-47 |
| Msa0625570 | Msa0792420 | 0.828927 | 6.848800e-55 | -8.615850e-47 |
| Msa0643980 | Msa0792420 | 0.828414 | 9.110243e-55 | -8.615850e-47 |
| Msa0659030 | Msa0792420 | 0.801026 | 1.093333e-48 | -8.615850e-47 |
| Msa0685460 | Msa0792420 | 0.800617 | 1.325314e-48 | -8.615850e-47 |
| Msa0705000 | Msa0792420 | 0.803622 | 3.193273e-49 | -8.615850e-47 |
| Msa0705040 | Msa0792420 | 0.803639 | 3.166488e-49 | -8.615850e-47 |
| Msa0705800 | Msa0792420 | 0.847288 | 1.271182e-59 | -8.615850e-47 |
| Msa0712610 | Msa0792420 | 0.902000 | 1.514627e-78 | -8.615850e-47 |
| Msa0729200 | Msa0792420 | 0.821342 | 4.248299e-53 | -8.615850e-47 |
| Msa0752910 | Msa0792420 | 0.827540 | 1.478701e-54 | -8.615850e-47 |
| Msa0769590 | Msa0792420 | 0.815424 | 9.310773e-52 | -8.615850e-47 |
| Msa0781080 | Msa0792420 | 0.840369 | 9.064720e-58 | -8.615850e-47 |
| Msa0785130 | Msa0792420 | 0.819274 | 1.265621e-52 | -8.615850e-47 |
| Msa0792420 | Msa0817540 | 0.811550 | 6.619526e-51 | -8.615850e-47 |
| Msa0792420 | Msa0822580 | 0.820168 | 7.907802e-53 | -8.615850e-47 |
| Msa0792420 | Msa0867060 | 0.828738 | 7.609069e-55 | -8.615850e-47 |
| Msa0792420 | Msa0876170 | 0.808274 | 3.356589e-50 | -8.615850e-47 |
| Msa0792420 | Msa0888810 | 0.850424 | 1.713069e-60 | -8.615850e-47 |
| Msa0792420 | Msa0915540 | 0.853635 | 2.098034e-61 | -8.615850e-47 |
| Msa0792420 | Msa0945480 | 0.847077 | 1.452880e-59 | -8.615850e-47 |
| Msa0792420 | Msa1019260 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0792420 | Msa1021120 | 0.817287 | 3.566420e-52 | -8.615850e-47 |
| Msa0792420 | Msa1037290 | 0.832555 | 8.841279e-56 | -8.615850e-47 |
| Msa0792420 | Msa1042780 | 0.822218 | 2.664655e-53 | -8.615850e-47 |
| Msa0792420 | Msa1078870 | 0.831530 | 1.584419e-55 | -8.615850e-47 |
| Msa0792420 | Msa1080350 | 0.866539 | 2.647951e-65 | -8.615850e-47 |
| Msa0792420 | Msa1082170 | 0.827305 | 1.684059e-54 | -8.615850e-47 |
| Msa0792420 | Msa1085470 | 0.816235 | 6.140228e-52 | -8.615850e-47 |
| Msa0792420 | Msa1088490 | 0.834205 | 3.428899e-56 | -8.615850e-47 |
| Msa0792420 | Msa1125500 | 0.806690 | 7.277850e-50 | -8.615850e-47 |
| Msa0792420 | Msa1125580 | 0.827588 | 1.440102e-54 | -8.615850e-47 |
| Msa0792420 | Msa1125860 | 0.862610 | 4.487504e-64 | -8.615850e-47 |
| Msa0792420 | Msa1126060 | 0.854742 | 1.005219e-61 | -8.615850e-47 |
| Msa0792420 | Msa1126520 | 0.845240 | 4.593174e-59 | -8.615850e-47 |
| Msa0792420 | Msa1164150 | 0.824871 | 6.380958e-54 | -8.615850e-47 |
| Msa0792420 | Msa1166860 | 0.807161 | 5.785026e-50 | -8.615850e-47 |
| Msa0792420 | Msa1167540 | 0.843929 | 1.035289e-58 | -8.615850e-47 |
| Msa0792420 | Msa1215820 | 0.837561 | 4.835195e-57 | -8.615850e-47 |
| Msa0792420 | Msa1241190 | 0.806270 | 8.923176e-50 | -8.615850e-47 |
| Msa0792420 | Msa1256840 | 0.872841 | 2.331479e-67 | -8.615850e-47 |
| Msa0792420 | Msa1266060 | 0.830784 | 2.415783e-55 | -8.615850e-47 |
| Msa0792420 | Msa1273340 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0792420 | Msa1295150 | 0.827160 | 1.824091e-54 | -8.615850e-47 |
| Msa0792420 | Msa1311400 | 0.839004 | 2.053788e-57 | -8.615850e-47 |
| Msa0792420 | Msa1321790 | 0.976069 | 3.987778e-141 | -8.615850e-47 |
| Msa0792420 | Msa1332250 | 0.831015 | 2.120930e-55 | -8.615850e-47 |
| Msa0792420 | Msa1338190 | 0.875426 | 3.110947e-68 | -8.615850e-47 |
| Msa0792420 | Msa1343260 | 0.815411 | 9.371033e-52 | -8.615850e-47 |
| Msa0792420 | Msa1349570 | 0.822003 | 2.987717e-53 | -8.615850e-47 |
| Msa0792420 | Msa1356790 | 0.904828 | 8.159665e-80 | -8.615850e-47 |
| Msa0792420 | Msa1362790 | 0.885916 | 5.380883e-72 | -8.615850e-47 |
| Msa0792420 | Msa1366180 | 0.811565 | 6.569648e-51 | -8.615850e-47 |
| Msa0792420 | Msa1368920 | 0.830257 | 3.252167e-55 | -8.615850e-47 |
| Msa0792420 | Msa1369190 | 0.832039 | 1.186699e-55 | -8.615850e-47 |
| Msa0792420 | Msa1374240 | 0.833040 | 6.700174e-56 | -8.615850e-47 |
| Msa0792420 | Msa1392590 | 0.832130 | 1.127002e-55 | -8.615850e-47 |
| Msa0792420 | Msa1397100 | 0.825763 | 3.925748e-54 | -8.615850e-47 |
| Msa0792420 | Msa1403910 | 0.825162 | 5.447362e-54 | -8.615850e-47 |
| Msa0792420 | Msa1410440 | 0.832648 | 8.382966e-56 | -8.615850e-47 |
| Msa0792420 | Msa1413260 | 0.807745 | 4.349874e-50 | -8.615850e-47 |
| Msa0792420 | Msa1418770 | 0.822810 | 1.941411e-53 | -8.615850e-47 |
| Msa0792420 | Msa1425670 | 0.809340 | 1.986396e-50 | -8.615850e-47 |
| Msa0792420 | Msa1426120 | 0.829936 | 3.895234e-55 | -8.615850e-47 |
| Msa0792420 | Msa1426490 | 0.851757 | 7.208918e-61 | -8.615850e-47 |
| Msa0792420 | Msa1437280 | 0.844589 | 6.883493e-59 | -8.615850e-47 |
| Msa0792420 | Msa1456050 | 0.852642 | 4.036919e-61 | -8.615850e-47 |
| Msa0792420 | Msa1462860 | 0.821165 | 4.668373e-53 | -8.615850e-47 |
| Msa0123010 | Msa0792420 | 0.812342 | 4.448842e-51 | -8.615850e-47 |
| Msa0128750 | Msa0792420 | 0.811809 | 5.812946e-51 | -8.615850e-47 |
| Msa0146340 | Msa0792420 | 0.807049 | 6.111856e-50 | -8.615850e-47 |
| Msa0173530 | Msa0792420 | 0.800515 | 1.390323e-48 | -8.615850e-47 |
| Msa0210330 | Msa0792420 | 0.853942 | 1.711897e-61 | -8.615850e-47 |
| Msa0210360 | Msa0792420 | 0.826339 | 2.864908e-54 | -8.615850e-47 |
| Msa0218830 | Msa0792420 | 0.800910 | 1.154590e-48 | -8.615850e-47 |
| Msa0219120 | Msa0792420 | 0.823866 | 1.099607e-53 | -8.615850e-47 |
| Msa0221030 | Msa0792420 | 0.834354 | 3.146870e-56 | -8.615850e-47 |
| Msa0224560 | Msa0792420 | 0.864753 | 9.689600e-65 | -8.615850e-47 |
| Msa0471880 | Msa0792420 | 0.819490 | 1.130356e-52 | -8.615850e-47 |
| Msa0481520 | Msa0792420 | 0.802333 | 5.895807e-49 | -8.615850e-47 |
| Msa0481850 | Msa0792420 | 0.869933 | 2.134697e-66 | -8.615850e-47 |
| Msa0250820 | Msa0792420 | 0.800798 | 1.217288e-48 | -8.615850e-47 |
| Msa0257450 | Msa0792420 | 0.843672 | 1.212958e-58 | -8.615850e-47 |
| Msa0258850 | Msa0792420 | 0.821700 | 3.512330e-53 | -8.615850e-47 |
| Msa0296720 | Msa0792420 | 0.804158 | 2.470335e-49 | -8.615850e-47 |
| Msa0297830 | Msa0792420 | 0.823608 | 1.263898e-53 | -8.615850e-47 |
| Msa0298200 | Msa0792420 | 0.821148 | 4.709110e-53 | -8.615850e-47 |
| Msa0327330 | Msa0792420 | 0.814224 | 1.718034e-51 | -8.615850e-47 |
| Msa0335840 | Msa0792420 | 0.835705 | 1.436199e-56 | -8.615850e-47 |
| Msa0336010 | Msa0792420 | 0.806380 | 8.461132e-50 | -8.615850e-47 |
| Msa0337670 | Msa0792420 | 0.843347 | 1.481358e-58 | -8.615850e-47 |
| Msa0348830 | Msa0792420 | 0.835703 | 1.438310e-56 | -8.615850e-47 |
| Msa0483110 | Msa0792420 | 0.835650 | 1.483354e-56 | -8.615850e-47 |
| Msa0573350 | Msa0792420 | 0.824257 | 8.904317e-54 | -8.615850e-47 |
| Msa0584030 | Msa0792420 | 0.830930 | 2.224506e-55 | -8.615850e-47 |
| Msa0590940 | Msa0792420 | 0.842305 | 2.805067e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792420 | MtrunA17_Chr8g0353881 | 99.130 | 115 | 1 | 0 | 1 | 115 | 29 | 143 | 4.66e-84 | 241 |
| Msa0792420 | MtrunA17_Chr3g0081741 | 91.304 | 115 | 10 | 0 | 1 | 115 | 29 | 143 | 4.21e-80 | 231 |
| Msa0792420 | MtrunA17_Chr3g0081771 | 77.381 | 84 | 17 | 1 | 32 | 115 | 10 | 91 | 3.05e-42 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792420 | AT3G02080.1 | 82.609 | 115 | 20 | 0 | 1 | 115 | 29 | 143 | 1.41e-72 | 213 |
| Msa0792420 | AT5G61170.1 | 80.702 | 114 | 22 | 0 | 1 | 114 | 29 | 142 | 9.50e-71 | 208 |
| Msa0792420 | AT5G15520.1 | 82.883 | 111 | 19 | 0 | 1 | 111 | 29 | 139 | 6.84e-70 | 206 |
Find 44 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATTCCAAAGGATTTA+TGG | 0.171916 | 5_3:+3659518 | Msa0792420:CDS |
| GCCATATTATGCCTAAATTA+TGG | 0.229792 | 5_3:+3660592 | Msa0792420:three_prime_UTR |
| GGTAGCTAAAACCATAATTT+AGG | 0.245466 | 5_3:-3660603 | None:intergenic |
| TGTCAAATTTAAAAGATATT+AGG | 0.258856 | 5_3:-3660624 | None:intergenic |
| ACCATAATTTAGGCATAATA+TGG | 0.297273 | 5_3:-3660593 | None:intergenic |
| AACTGCAAAATTCAAAGAAT+TGG | 0.319374 | 5_3:+3659293 | Msa0792420:CDS |
| TGATCCGAAAACGTGTAATT+AGG | 0.326862 | 5_3:-3660780 | None:intergenic |
| ATAATACCAATCAGGATCAT+AGG | 0.347366 | 5_3:-3659319 | None:intergenic |
| GGCTCCCACCATAAATCCTT+TGG | 0.389483 | 5_3:-3659526 | None:intergenic |
| GTCGAGATCCCGCCGGCCAC+TGG | 0.400454 | 5_3:-3660488 | None:intergenic |
| ATCTACATAAGAGGCGGTCT+TGG | 0.403127 | 5_3:+3659491 | Msa0792420:CDS |
| GTACTCAATTTCAGCTTCCA+TGG | 0.471471 | 5_3:+3659460 | Msa0792420:intron |
| TGGCTCCCTATGATCCTGAT+TGG | 0.474063 | 5_3:+3659313 | Msa0792420:CDS |
| CGGGATCTCGACCAAGTGGC+TGG | 0.481272 | 5_3:+3660499 | Msa0792420:CDS |
| GCTCTAACATAATACCAATC+AGG | 0.489642 | 5_3:-3659327 | None:intergenic |
| TTGGTGTTGGTTCATTCCAA+AGG | 0.500013 | 5_3:+3659510 | Msa0792420:CDS |
| CTAGAATCCGTCCAGCCACT+TGG | 0.508085 | 5_3:-3660510 | None:intergenic |
| TATGTAGATCTTCCTTGCCA+TGG | 0.510578 | 5_3:-3659477 | None:intergenic |
| GAGGGCGACTTCCATTCCTC+TGG | 0.516528 | 5_3:-3659547 | None:intergenic |
| ATAAGAGGCGGTCTTGGTGT+TGG | 0.519137 | 5_3:+3659497 | Msa0792420:CDS |
| AGATTGTTCAATCTTCACTC+TGG | 0.534772 | 5_3:+3660711 | Msa0792420:three_prime_UTR |
| TAATACCAATCAGGATCATA+GGG | 0.537599 | 5_3:-3659318 | None:intergenic |
| CAATTTCAGCTTCCATGGCA+AGG | 0.544710 | 5_3:+3659465 | Msa0792420:intron |
| GCAAGGAAGATCTACATAAG+AGG | 0.545628 | 5_3:+3659482 | Msa0792420:CDS |
| AATTACATCCAGTGGCCGGC+GGG | 0.546453 | 5_3:+3660480 | Msa0792420:CDS |
| AGGCAAAGAAATAATGTCAA+AGG | 0.556549 | 5_3:-3660760 | None:intergenic |
| TCGTCACATTCTTCAACAGT+TGG | 0.571334 | 5_3:+3659601 | Msa0792420:CDS |
| CATTCCAAAGGATTTATGGT+GGG | 0.572274 | 5_3:+3659522 | Msa0792420:CDS |
| GGATTTATGGTGGGAGCCAG+AGG | 0.572742 | 5_3:+3659531 | Msa0792420:CDS |
| GATTGGTATTATGTTAGAGC+TGG | 0.573765 | 5_3:+3659330 | Msa0792420:CDS |
| ATCTCGACCAAGTGGCTGGA+CGG | 0.574019 | 5_3:+3660503 | Msa0792420:CDS |
| GAACATGAACCTCATCGAGA+TGG | 0.583253 | 5_3:+3659625 | Msa0792420:CDS |
| TCATCGAGATGGATACCAAA+GGG | 0.584221 | 5_3:+3659636 | Msa0792420:CDS |
| GGAAAATTACATCCAGTGGC+CGG | 0.588367 | 5_3:+3660476 | Msa0792420:CDS |
| GGCAGGAAAATTACATCCAG+TGG | 0.598688 | 5_3:+3660472 | Msa0792420:CDS |
| TATGGTGGGAGCCAGAGGAA+TGG | 0.616028 | 5_3:+3659536 | Msa0792420:CDS |
| TCATTCCAAAGGATTTATGG+TGG | 0.619819 | 5_3:+3659521 | Msa0792420:CDS |
| TTGACAAGATCAGTCCACTC+AGG | 0.623178 | 5_3:-3659270 | None:intergenic |
| AATAGTTGGAGCTGCCTGAG+TGG | 0.627148 | 5_3:+3659256 | None:intergenic |
| AAATTACATCCAGTGGCCGG+CGG | 0.648983 | 5_3:+3660479 | Msa0792420:CDS |
| CTCATCGAGATGGATACCAA+AGG | 0.653842 | 5_3:+3659635 | Msa0792420:CDS |
| CTTTGGTATCCATCTCGATG+AGG | 0.659041 | 5_3:-3659634 | None:intergenic |
| AGGAAGATCTACATAAGAGG+CGG | 0.678529 | 5_3:+3659485 | Msa0792420:CDS |
| CCACTTGGTCGAGATCCCGC+CGG | 0.692829 | 5_3:-3660495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAAAATACTGTT+TGG | + | chr5_3:3660014-3660033 | Msa0792420:intron | 10.0% |
| !!! | TATTTTTTAAAAATACTGTT+TGG | + | chr5_3:3660014-3660033 | Msa0792420:intron | 10.0% |
| !! | TATAAATGATATATCTTCAA+AGG | - | chr5_3:3659757-3659776 | None:intergenic | 15.0% |
| !!! | AAATTATTGATTCTAATCAT+AGG | + | chr5_3:3660361-3660380 | Msa0792420:intron | 15.0% |
| !! | TGTCAAATTTAAAAGATATT+AGG | - | chr5_3:3660627-3660646 | None:intergenic | 15.0% |
| !! | TATAAATGATATATCTTCAA+AGG | - | chr5_3:3659757-3659776 | None:intergenic | 15.0% |
| !!! | AAATTATTGATTCTAATCAT+AGG | + | chr5_3:3660361-3660380 | Msa0792420:intron | 15.0% |
| !! | TGTCAAATTTAAAAGATATT+AGG | - | chr5_3:3660627-3660646 | None:intergenic | 15.0% |
| !!! | ATTATATAATCTAGCTTATG+CGG | + | chr5_3:3660070-3660089 | Msa0792420:intron | 20.0% |
| !!! | AATATATTTTTATATCCCAG+TGG | + | chr5_3:3660451-3660470 | Msa0792420:intron | 20.0% |
| !!! | GCTTAATGAAACTTTTTATT+TGG | + | chr5_3:3660557-3660576 | Msa0792420:three_prime_UTR | 20.0% |
| !!! | ATTATATAATCTAGCTTATG+CGG | + | chr5_3:3660070-3660089 | Msa0792420:intron | 20.0% |
| !!! | AATATATTTTTATATCCCAG+TGG | + | chr5_3:3660451-3660470 | Msa0792420:intron | 20.0% |
| !!! | GCTTAATGAAACTTTTTATT+TGG | + | chr5_3:3660557-3660576 | Msa0792420:three_prime_UTR | 20.0% |
| ! | AACTGCAAAATTCAAAGAAT+TGG | + | chr5_3:3659293-3659312 | Msa0792420:CDS | 25.0% |
| ! | AACATGATACTTCTAATTCT+TGG | + | chr5_3:3659396-3659415 | Msa0792420:intron | 25.0% |
| ! | ACATTATGAGCTAAGTAAAA+CGG | - | chr5_3:3659684-3659703 | None:intergenic | 25.0% |
| ! | GAAAATTAATGCTAACATTG+TGG | + | chr5_3:3659719-3659738 | Msa0792420:intron | 25.0% |
| ! | AAGAGTAGATAAAATATCAC+AGG | + | chr5_3:3659805-3659824 | Msa0792420:intron | 25.0% |
| !! | ATGTATGAAGACTAGATTTT+AGG | - | chr5_3:3659867-3659886 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5_3:3659932-3659951 | Msa0792420:intron | 25.0% |
| !!! | AGCTTATCTTTTTTTTTTGG+TGG | - | chr5_3:3659980-3659999 | None:intergenic | 25.0% |
| !!! | CAGAGCTTATCTTTTTTTTT+TGG | - | chr5_3:3659983-3660002 | None:intergenic | 25.0% |
| !!! | ATCAAGTTTGCATCTTTTTT+GGG | - | chr5_3:3660235-3660254 | None:intergenic | 25.0% |
| !!! | AATCAAGTTTGCATCTTTTT+TGG | - | chr5_3:3660236-3660255 | None:intergenic | 25.0% |
| !!! | TCCATTTTTTCTGAATATCA+AGG | + | chr5_3:3660285-3660304 | Msa0792420:intron | 25.0% |
| ! | TCCTTGATATTCAGAAAAAA+TGG | - | chr5_3:3660289-3660308 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGAATATCAAGGA+TGG | + | chr5_3:3660289-3660308 | Msa0792420:intron | 25.0% |
| ! | ACCATAATTTAGGCATAATA+TGG | - | chr5_3:3660596-3660615 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTCAAAGAAT+TGG | + | chr5_3:3659293-3659312 | Msa0792420:CDS | 25.0% |
| ! | AACATGATACTTCTAATTCT+TGG | + | chr5_3:3659396-3659415 | Msa0792420:intron | 25.0% |
| ! | ACATTATGAGCTAAGTAAAA+CGG | - | chr5_3:3659684-3659703 | None:intergenic | 25.0% |
| ! | GAAAATTAATGCTAACATTG+TGG | + | chr5_3:3659719-3659738 | Msa0792420:intron | 25.0% |
| ! | AAGAGTAGATAAAATATCAC+AGG | + | chr5_3:3659805-3659824 | Msa0792420:intron | 25.0% |
| !! | ATGTATGAAGACTAGATTTT+AGG | - | chr5_3:3659867-3659886 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5_3:3659932-3659951 | Msa0792420:intron | 25.0% |
| !!! | AGCTTATCTTTTTTTTTTGG+TGG | - | chr5_3:3659980-3659999 | None:intergenic | 25.0% |
| !!! | CAGAGCTTATCTTTTTTTTT+TGG | - | chr5_3:3659983-3660002 | None:intergenic | 25.0% |
| !!! | ATCAAGTTTGCATCTTTTTT+GGG | - | chr5_3:3660235-3660254 | None:intergenic | 25.0% |
| !!! | AATCAAGTTTGCATCTTTTT+TGG | - | chr5_3:3660236-3660255 | None:intergenic | 25.0% |
| !!! | TCCATTTTTTCTGAATATCA+AGG | + | chr5_3:3660285-3660304 | Msa0792420:intron | 25.0% |
| ! | TCCTTGATATTCAGAAAAAA+TGG | - | chr5_3:3660289-3660308 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGAATATCAAGGA+TGG | + | chr5_3:3660289-3660308 | Msa0792420:intron | 25.0% |
| ! | ACCATAATTTAGGCATAATA+TGG | - | chr5_3:3660596-3660615 | None:intergenic | 25.0% |
| TAATACCAATCAGGATCATA+GGG | - | chr5_3:3659321-3659340 | None:intergenic | 30.0% | |
| ATAATACCAATCAGGATCAT+AGG | - | chr5_3:3659322-3659341 | None:intergenic | 30.0% | |
| !! | GTTAGCATTAATTTTCAAGC+AGG | - | chr5_3:3659715-3659734 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGGTGTCT+AGG | - | chr5_3:3659972-3659991 | None:intergenic | 30.0% |
| ATTAAGCATCACACATTTGA+AGG | + | chr5_3:3660418-3660437 | Msa0792420:intron | 30.0% | |
| GCCATATTATGCCTAAATTA+TGG | + | chr5_3:3660592-3660611 | Msa0792420:three_prime_UTR | 30.0% | |
| GGTAGCTAAAACCATAATTT+AGG | - | chr5_3:3660606-3660625 | None:intergenic | 30.0% | |
| AGGCAAAGAAATAATGTCAA+AGG | - | chr5_3:3660763-3660782 | None:intergenic | 30.0% | |
| ! | TTTGCCTAATTACACGTTTT+CGG | + | chr5_3:3660776-3660795 | Msa0792420:three_prime_UTR | 30.0% |
| TAATACCAATCAGGATCATA+GGG | - | chr5_3:3659321-3659340 | None:intergenic | 30.0% | |
| ATAATACCAATCAGGATCAT+AGG | - | chr5_3:3659322-3659341 | None:intergenic | 30.0% | |
| !! | GTTAGCATTAATTTTCAAGC+AGG | - | chr5_3:3659715-3659734 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGGTGTCT+AGG | - | chr5_3:3659972-3659991 | None:intergenic | 30.0% |
| ATTAAGCATCACACATTTGA+AGG | + | chr5_3:3660418-3660437 | Msa0792420:intron | 30.0% | |
| GCCATATTATGCCTAAATTA+TGG | + | chr5_3:3660592-3660611 | Msa0792420:three_prime_UTR | 30.0% | |
| GGTAGCTAAAACCATAATTT+AGG | - | chr5_3:3660606-3660625 | None:intergenic | 30.0% | |
| AGGCAAAGAAATAATGTCAA+AGG | - | chr5_3:3660763-3660782 | None:intergenic | 30.0% | |
| ! | TTTGCCTAATTACACGTTTT+CGG | + | chr5_3:3660776-3660795 | Msa0792420:three_prime_UTR | 30.0% |
| GCTCTAACATAATACCAATC+AGG | - | chr5_3:3659330-3659349 | None:intergenic | 35.0% | |
| GATTGGTATTATGTTAGAGC+TGG | + | chr5_3:3659330-3659349 | Msa0792420:CDS | 35.0% | |
| GGTTCATTCCAAAGGATTTA+TGG | + | chr5_3:3659518-3659537 | Msa0792420:CDS | 35.0% | |
| TCATTCCAAAGGATTTATGG+TGG | + | chr5_3:3659521-3659540 | Msa0792420:CDS | 35.0% | |
| CATTCCAAAGGATTTATGGT+GGG | + | chr5_3:3659522-3659541 | Msa0792420:CDS | 35.0% | |
| GAAAAAAGAGTTCTACCCTT+TGG | - | chr5_3:3659654-3659673 | None:intergenic | 35.0% | |
| CAGTTGAGAGAAATAGTACT+AGG | - | chr5_3:3659831-3659850 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr5_3:3659937-3659956 | Msa0792420:intron | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | + | chr5_3:3659938-3659957 | Msa0792420:intron | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | + | chr5_3:3659939-3659958 | Msa0792420:intron | 35.0% | |
| ! | TATAATCTAGCTTATGCGGT+CGG | + | chr5_3:3660074-3660093 | Msa0792420:intron | 35.0% |
| ! | CAAGTAGATTTAGAGCTGTT+TGG | - | chr5_3:3660162-3660181 | None:intergenic | 35.0% |
| TTGCTACAGACAATACTGTA+CGG | - | chr5_3:3660195-3660214 | None:intergenic | 35.0% | |
| !! | TGCAAACTTGATTTGCATCA+AGG | + | chr5_3:3660243-3660262 | Msa0792420:intron | 35.0% |
| !! | TATTTTTATATCCCAGTGGC+AGG | + | chr5_3:3660455-3660474 | Msa0792420:intron | 35.0% |
| ! | AAGCTTTTGCTGACAAATCA+AGG | - | chr5_3:3660541-3660560 | None:intergenic | 35.0% |
| AGATTGTTCAATCTTCACTC+TGG | + | chr5_3:3660711-3660730 | Msa0792420:three_prime_UTR | 35.0% | |
| TGATCCGAAAACGTGTAATT+AGG | - | chr5_3:3660783-3660802 | None:intergenic | 35.0% | |
| GCTCTAACATAATACCAATC+AGG | - | chr5_3:3659330-3659349 | None:intergenic | 35.0% | |
| GATTGGTATTATGTTAGAGC+TGG | + | chr5_3:3659330-3659349 | Msa0792420:CDS | 35.0% | |
| GGTTCATTCCAAAGGATTTA+TGG | + | chr5_3:3659518-3659537 | Msa0792420:CDS | 35.0% | |
| TCATTCCAAAGGATTTATGG+TGG | + | chr5_3:3659521-3659540 | Msa0792420:CDS | 35.0% | |
| CATTCCAAAGGATTTATGGT+GGG | + | chr5_3:3659522-3659541 | Msa0792420:CDS | 35.0% | |
| GAAAAAAGAGTTCTACCCTT+TGG | - | chr5_3:3659654-3659673 | None:intergenic | 35.0% | |
| CAGTTGAGAGAAATAGTACT+AGG | - | chr5_3:3659831-3659850 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr5_3:3659937-3659956 | Msa0792420:intron | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | + | chr5_3:3659938-3659957 | Msa0792420:intron | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | + | chr5_3:3659939-3659958 | Msa0792420:intron | 35.0% | |
| ! | TATAATCTAGCTTATGCGGT+CGG | + | chr5_3:3660074-3660093 | Msa0792420:intron | 35.0% |
| ! | CAAGTAGATTTAGAGCTGTT+TGG | - | chr5_3:3660162-3660181 | None:intergenic | 35.0% |
| TTGCTACAGACAATACTGTA+CGG | - | chr5_3:3660195-3660214 | None:intergenic | 35.0% | |
| !! | TGCAAACTTGATTTGCATCA+AGG | + | chr5_3:3660243-3660262 | Msa0792420:intron | 35.0% |
| !! | TATTTTTATATCCCAGTGGC+AGG | + | chr5_3:3660455-3660474 | Msa0792420:intron | 35.0% |
| ! | AAGCTTTTGCTGACAAATCA+AGG | - | chr5_3:3660541-3660560 | None:intergenic | 35.0% |
| AGATTGTTCAATCTTCACTC+TGG | + | chr5_3:3660711-3660730 | Msa0792420:three_prime_UTR | 35.0% | |
| TGATCCGAAAACGTGTAATT+AGG | - | chr5_3:3660783-3660802 | None:intergenic | 35.0% | |
| ! | TCTTGGTATTTTGTTGCTGC+TGG | + | chr5_3:3659413-3659432 | Msa0792420:intron | 40.0% |
| GTACTCAATTTCAGCTTCCA+TGG | + | chr5_3:3659460-3659479 | Msa0792420:intron | 40.0% | |
| TATGTAGATCTTCCTTGCCA+TGG | - | chr5_3:3659480-3659499 | None:intergenic | 40.0% | |
| GCAAGGAAGATCTACATAAG+AGG | + | chr5_3:3659482-3659501 | Msa0792420:CDS | 40.0% | |
| AGGAAGATCTACATAAGAGG+CGG | + | chr5_3:3659485-3659504 | Msa0792420:CDS | 40.0% | |
| !! | TTGGTGTTGGTTCATTCCAA+AGG | + | chr5_3:3659510-3659529 | Msa0792420:CDS | 40.0% |
| TGCTCTTGCAAAAATGTGGA+GGG | - | chr5_3:3659568-3659587 | None:intergenic | 40.0% | |
| TCGTCACATTCTTCAACAGT+TGG | + | chr5_3:3659601-3659620 | Msa0792420:CDS | 40.0% | |
| TCATCGAGATGGATACCAAA+GGG | + | chr5_3:3659636-3659655 | Msa0792420:CDS | 40.0% | |
| AGCTAAGTAAAACGGAGCAA+AGG | - | chr5_3:3659676-3659695 | None:intergenic | 40.0% | |
| ! | GATGTAATTTTCCTGCCACT+GGG | - | chr5_3:3660469-3660488 | None:intergenic | 40.0% |
| ! | TCTTGGTATTTTGTTGCTGC+TGG | + | chr5_3:3659413-3659432 | Msa0792420:intron | 40.0% |
| GTACTCAATTTCAGCTTCCA+TGG | + | chr5_3:3659460-3659479 | Msa0792420:intron | 40.0% | |
| TATGTAGATCTTCCTTGCCA+TGG | - | chr5_3:3659480-3659499 | None:intergenic | 40.0% | |
| GCAAGGAAGATCTACATAAG+AGG | + | chr5_3:3659482-3659501 | Msa0792420:CDS | 40.0% | |
| AGGAAGATCTACATAAGAGG+CGG | + | chr5_3:3659485-3659504 | Msa0792420:CDS | 40.0% | |
| !! | TTGGTGTTGGTTCATTCCAA+AGG | + | chr5_3:3659510-3659529 | Msa0792420:CDS | 40.0% |
| TGCTCTTGCAAAAATGTGGA+GGG | - | chr5_3:3659568-3659587 | None:intergenic | 40.0% | |
| TCGTCACATTCTTCAACAGT+TGG | + | chr5_3:3659601-3659620 | Msa0792420:CDS | 40.0% | |
| TCATCGAGATGGATACCAAA+GGG | + | chr5_3:3659636-3659655 | Msa0792420:CDS | 40.0% | |
| AGCTAAGTAAAACGGAGCAA+AGG | - | chr5_3:3659676-3659695 | None:intergenic | 40.0% | |
| ! | GATGTAATTTTCCTGCCACT+GGG | - | chr5_3:3660469-3660488 | None:intergenic | 40.0% |
| TTGACAAGATCAGTCCACTC+AGG | - | chr5_3:3659273-3659292 | None:intergenic | 45.0% | |
| CAATTTCAGCTTCCATGGCA+AGG | + | chr5_3:3659465-3659484 | Msa0792420:intron | 45.0% | |
| ATCTACATAAGAGGCGGTCT+TGG | + | chr5_3:3659491-3659510 | Msa0792420:CDS | 45.0% | |
| CTGCTCTTGCAAAAATGTGG+AGG | - | chr5_3:3659569-3659588 | None:intergenic | 45.0% | |
| CCACTGCTCTTGCAAAAATG+TGG | - | chr5_3:3659572-3659591 | None:intergenic | 45.0% | |
| ! | CCACATTTTTGCAAGAGCAG+TGG | + | chr5_3:3659569-3659588 | Msa0792420:CDS | 45.0% |
| GAACATGAACCTCATCGAGA+TGG | + | chr5_3:3659625-3659644 | Msa0792420:CDS | 45.0% | |
| CTTTGGTATCCATCTCGATG+AGG | - | chr5_3:3659637-3659656 | None:intergenic | 45.0% | |
| CTCATCGAGATGGATACCAA+AGG | + | chr5_3:3659635-3659654 | Msa0792420:CDS | 45.0% | |
| TACCAACTGAGCTATGCTCA+CGG | - | chr5_3:3659910-3659929 | None:intergenic | 45.0% | |
| ! | TGAGCATAGCTCAGTTGGTA+GGG | + | chr5_3:3659910-3659929 | Msa0792420:intron | 45.0% |
| ACAAGCGCGTATCATGATGA+GGG | - | chr5_3:3660113-3660132 | None:intergenic | 45.0% | |
| ! | GGATGTAATTTTCCTGCCAC+TGG | - | chr5_3:3660470-3660489 | None:intergenic | 45.0% |
| GGCAGGAAAATTACATCCAG+TGG | + | chr5_3:3660472-3660491 | Msa0792420:CDS | 45.0% | |
| GGAAAATTACATCCAGTGGC+CGG | + | chr5_3:3660476-3660495 | Msa0792420:CDS | 45.0% | |
| TTGACAAGATCAGTCCACTC+AGG | - | chr5_3:3659273-3659292 | None:intergenic | 45.0% | |
| CAATTTCAGCTTCCATGGCA+AGG | + | chr5_3:3659465-3659484 | Msa0792420:intron | 45.0% | |
| ATCTACATAAGAGGCGGTCT+TGG | + | chr5_3:3659491-3659510 | Msa0792420:CDS | 45.0% | |
| CTGCTCTTGCAAAAATGTGG+AGG | - | chr5_3:3659569-3659588 | None:intergenic | 45.0% | |
| CCACTGCTCTTGCAAAAATG+TGG | - | chr5_3:3659572-3659591 | None:intergenic | 45.0% | |
| ! | CCACATTTTTGCAAGAGCAG+TGG | + | chr5_3:3659569-3659588 | Msa0792420:CDS | 45.0% |
| GAACATGAACCTCATCGAGA+TGG | + | chr5_3:3659625-3659644 | Msa0792420:CDS | 45.0% | |
| CTTTGGTATCCATCTCGATG+AGG | - | chr5_3:3659637-3659656 | None:intergenic | 45.0% | |
| CTCATCGAGATGGATACCAA+AGG | + | chr5_3:3659635-3659654 | Msa0792420:CDS | 45.0% | |
| TACCAACTGAGCTATGCTCA+CGG | - | chr5_3:3659910-3659929 | None:intergenic | 45.0% | |
| ! | TGAGCATAGCTCAGTTGGTA+GGG | + | chr5_3:3659910-3659929 | Msa0792420:intron | 45.0% |
| ACAAGCGCGTATCATGATGA+GGG | - | chr5_3:3660113-3660132 | None:intergenic | 45.0% | |
| ! | GGATGTAATTTTCCTGCCAC+TGG | - | chr5_3:3660470-3660489 | None:intergenic | 45.0% |
| GGCAGGAAAATTACATCCAG+TGG | + | chr5_3:3660472-3660491 | Msa0792420:CDS | 45.0% | |
| GGAAAATTACATCCAGTGGC+CGG | + | chr5_3:3660476-3660495 | Msa0792420:CDS | 45.0% | |
| TGGCTCCCTATGATCCTGAT+TGG | + | chr5_3:3659313-3659332 | Msa0792420:CDS | 50.0% | |
| ! | ATAAGAGGCGGTCTTGGTGT+TGG | + | chr5_3:3659497-3659516 | Msa0792420:CDS | 50.0% |
| GGCTCCCACCATAAATCCTT+TGG | - | chr5_3:3659529-3659548 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr5_3:3659909-3659928 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr5_3:3659909-3659928 | Msa0792420:intron | 50.0% | |
| CACAAGCGCGTATCATGATG+AGG | - | chr5_3:3660114-3660133 | None:intergenic | 50.0% | |
| AAATTACATCCAGTGGCCGG+CGG | + | chr5_3:3660479-3660498 | Msa0792420:CDS | 50.0% | |
| TGGCTCCCTATGATCCTGAT+TGG | + | chr5_3:3659313-3659332 | Msa0792420:CDS | 50.0% | |
| ! | ATAAGAGGCGGTCTTGGTGT+TGG | + | chr5_3:3659497-3659516 | Msa0792420:CDS | 50.0% |
| GGCTCCCACCATAAATCCTT+TGG | - | chr5_3:3659529-3659548 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr5_3:3659909-3659928 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr5_3:3659909-3659928 | Msa0792420:intron | 50.0% | |
| CACAAGCGCGTATCATGATG+AGG | - | chr5_3:3660114-3660133 | None:intergenic | 50.0% | |
| AAATTACATCCAGTGGCCGG+CGG | + | chr5_3:3660479-3660498 | Msa0792420:CDS | 50.0% | |
| ! | GGATTTATGGTGGGAGCCAG+AGG | + | chr5_3:3659531-3659550 | Msa0792420:CDS | 55.0% |
| ! | TATGGTGGGAGCCAGAGGAA+TGG | + | chr5_3:3659536-3659555 | Msa0792420:CDS | 55.0% |
| CCAACTGAGCTATGCTCACG+GGG | - | chr5_3:3659908-3659927 | None:intergenic | 55.0% | |
| AATTACATCCAGTGGCCGGC+GGG | + | chr5_3:3660480-3660499 | Msa0792420:CDS | 55.0% | |
| ATCTCGACCAAGTGGCTGGA+CGG | + | chr5_3:3660503-3660522 | Msa0792420:CDS | 55.0% | |
| CTAGAATCCGTCCAGCCACT+TGG | - | chr5_3:3660513-3660532 | None:intergenic | 55.0% | |
| ! | GGATTTATGGTGGGAGCCAG+AGG | + | chr5_3:3659531-3659550 | Msa0792420:CDS | 55.0% |
| ! | TATGGTGGGAGCCAGAGGAA+TGG | + | chr5_3:3659536-3659555 | Msa0792420:CDS | 55.0% |
| CCAACTGAGCTATGCTCACG+GGG | - | chr5_3:3659908-3659927 | None:intergenic | 55.0% | |
| AATTACATCCAGTGGCCGGC+GGG | + | chr5_3:3660480-3660499 | Msa0792420:CDS | 55.0% | |
| ATCTCGACCAAGTGGCTGGA+CGG | + | chr5_3:3660503-3660522 | Msa0792420:CDS | 55.0% | |
| CTAGAATCCGTCCAGCCACT+TGG | - | chr5_3:3660513-3660532 | None:intergenic | 55.0% | |
| GAGGGCGACTTCCATTCCTC+TGG | - | chr5_3:3659550-3659569 | None:intergenic | 60.0% | |
| CCCCGTGAGCATAGCTCAGT+TGG | + | chr5_3:3659905-3659924 | Msa0792420:intron | 60.0% | |
| GAGGGCGACTTCCATTCCTC+TGG | - | chr5_3:3659550-3659569 | None:intergenic | 60.0% | |
| CCCCGTGAGCATAGCTCAGT+TGG | + | chr5_3:3659905-3659924 | Msa0792420:intron | 60.0% | |
| CCACTTGGTCGAGATCCCGC+CGG | - | chr5_3:3660498-3660517 | None:intergenic | 65.0% | |
| CGGGATCTCGACCAAGTGGC+TGG | + | chr5_3:3660499-3660518 | Msa0792420:CDS | 65.0% | |
| CCACTTGGTCGAGATCCCGC+CGG | - | chr5_3:3660498-3660517 | None:intergenic | 65.0% | |
| CGGGATCTCGACCAAGTGGC+TGG | + | chr5_3:3660499-3660518 | Msa0792420:CDS | 65.0% | |
| CCGGCGGGATCTCGACCAAG+TGG | + | chr5_3:3660495-3660514 | Msa0792420:CDS | 70.0% | |
| CCGGCGGGATCTCGACCAAG+TGG | + | chr5_3:3660495-3660514 | Msa0792420:CDS | 70.0% | |
| GTCGAGATCCCGCCGGCCAC+TGG | - | chr5_3:3660491-3660510 | None:intergenic | 75.0% | |
| GTCGAGATCCCGCCGGCCAC+TGG | - | chr5_3:3660491-3660510 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3659261 | 3660830 | 3659261 | ID=Msa0792420;Name=Msa0792420 |
| chr5_3 | mRNA | 3659261 | 3660830 | 3659261 | ID=Msa0792420-mRNA-1;Parent=Msa0792420;Name=Msa0792420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.66|1|1|1|3|287|115 |
| chr5_3 | exon | 3659261 | 3659351 | 3659261 | ID=Msa0792420-mRNA-1:exon:1585;Parent=Msa0792420-mRNA-1 |
| chr5_3 | exon | 3659474 | 3659657 | 3659474 | ID=Msa0792420-mRNA-1:exon:1586;Parent=Msa0792420-mRNA-1 |
| chr5_3 | exon | 3660471 | 3660830 | 3660471 | ID=Msa0792420-mRNA-1:exon:1587;Parent=Msa0792420-mRNA-1 |
| chr5_3 | CDS | 3659261 | 3659351 | 3659261 | ID=Msa0792420-mRNA-1:cds;Parent=Msa0792420-mRNA-1 |
| chr5_3 | CDS | 3659474 | 3659657 | 3659474 | ID=Msa0792420-mRNA-1:cds;Parent=Msa0792420-mRNA-1 |
| chr5_3 | CDS | 3660471 | 3660543 | 3660471 | ID=Msa0792420-mRNA-1:cds;Parent=Msa0792420-mRNA-1 |
| chr5_3 | three_prime_UTR | 3660544 | 3660830 | 3660544 | ID=Msa0792420-mRNA-1:three_prime_utr;Parent=Msa0792420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
