AlfalfaGEDB | Msa0573350

M. sativa cultivar zhongmu-4 / Msa0573350

KEGG: K02957
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904
PFAM: PF00410.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573350	XP_003630655.1	98.450	129	2	0	1	129	1	129	4.02e-90	267

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573350	sp\|Q9M0E0\|R15A5_ARATH	81.395	129	24	0	1	129	1	129	5.91e-78	229

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573350	B7FH41	98.450	129	2	0	1	129	1	129	1.92e-90	267

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0082280	Msa0573350	0.819943	8.905455e-53	-8.615850e-47
Msa0149190	Msa0573350	0.818051	2.397796e-52	-8.615850e-47
Msa0149200	Msa0573350	0.801040	1.086227e-48	-8.615850e-47
Msa0174770	Msa0573350	0.801190	1.012211e-48	-8.615850e-47
Msa0181610	Msa0573350	0.809599	1.747524e-50	-8.615850e-47
Msa0390030	Msa0573350	0.809546	1.793634e-50	-8.615850e-47
Msa0427150	Msa0573350	0.805840	1.099381e-49	-8.615850e-47
Msa0432210	Msa0573350	0.833471	5.233383e-56	-8.615850e-47
Msa0481850	Msa0573350	0.847987	8.163950e-60	-8.615850e-47
Msa0333910	Msa0573350	0.808333	3.260456e-50	-8.615850e-47
Msa0348830	Msa0573350	0.816985	4.170446e-52	-8.615850e-47
Msa0521050	Msa0573350	0.811574	6.541949e-51	-8.615850e-47
Msa0573350	Msa0604960	0.819590	1.072080e-52	-8.615850e-47
Msa0573350	Msa0615990	0.809628	1.722404e-50	-8.615850e-47
Msa0573350	Msa0643980	0.809977	1.449141e-50	-8.615850e-47
Msa0573350	Msa0685460	0.832823	7.584656e-56	-8.615850e-47
Msa0573350	Msa0712610	0.835012	2.148909e-56	-8.615850e-47
Msa0573350	Msa0752910	0.851900	6.563660e-61	-8.615850e-47
Msa0573350	Msa0792420	0.824257	8.904317e-54	-8.615850e-47
Msa0573350	Msa0945480	0.811495	6.805636e-51	-8.615850e-47
Msa0573350	Msa1023160	0.827345	1.646783e-54	-8.615850e-47
Msa0573350	Msa1080350	0.846491	2.100723e-59	-8.615850e-47
Msa0573350	Msa1085470	0.807408	5.129512e-50	-8.615850e-47
Msa0573350	Msa1125860	0.846609	1.950072e-59	-8.615850e-47
Msa0573350	Msa1126060	0.844353	7.970731e-59	-8.615850e-47
Msa0573350	Msa1126510	0.807008	6.234906e-50	-8.615850e-47
Msa0573350	Msa1126770	0.806482	8.053709e-50	-8.615850e-47
Msa0573350	Msa1166860	0.813144	2.970054e-51	-8.615850e-47
Msa0573350	Msa1256840	0.820352	7.176535e-53	-8.615850e-47
Msa0573350	Msa1257510	0.803129	4.039293e-49	-8.615850e-47
Msa0573350	Msa1295150	0.803154	3.990642e-49	-8.615850e-47
Msa0573350	Msa1321790	0.828084	1.094161e-54	-8.615850e-47
Msa0573350	Msa1338190	0.845196	4.720986e-59	-8.615850e-47
Msa0573350	Msa1356790	0.823299	1.492303e-53	-8.615850e-47
Msa0573350	Msa1362210	0.806589	7.644143e-50	-8.615850e-47
Msa0573350	Msa1362790	0.845453	4.022577e-59	-8.615850e-47
Msa0573350	Msa1369190	0.833692	4.607255e-56	-8.615850e-47
Msa0573350	Msa1370860	0.816089	6.618337e-52	-8.615850e-47
Msa0573350	Msa1407070	0.803498	3.387138e-49	-8.615850e-47
Msa0573350	Msa1413260	0.845162	4.821981e-59	-8.615850e-47
Msa0573350	Msa1425670	0.848553	5.696553e-60	-8.615850e-47
Msa0573350	Msa1450280	0.802536	5.355015e-49	-8.615850e-47
Msa0573350	Msa1456050	0.834889	2.308422e-56	-8.615850e-47
Msa0573350	Msa1462860	0.886389	3.567737e-72	-8.615850e-47
Msa0573350	Msa1465080	0.810953	8.919508e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573350	MtrunA17_Chr8g0389371	98.450	129	2	1	129	1	129	3.69e-94	267
Msa0573350	MtrunA17_Chr4g0051921	52.000	125	60	5	129	6	130	6.13e-46	145
Msa0573350	MtrunA17_Chr1g0205971	52.000	125	60	5	129	6	130	6.13e-46	145
Msa0573350	MtrunA17_Chr4g0065831	52.000	125	60	5	129	6	130	1.57e-45	144

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573350	AT4G29430.1	81.395	129	24	1	129	1	129	6.01e-79	229
Msa0573350	AT2G19720.1	79.845	129	26	1	129	1	129	1.67e-77	225
Msa0573350	AT2G39590.1	52.000	125	60	5	129	6	130	3.64e-46	146
Msa0573350	AT5G59850.1	52.000	125	60	5	129	6	130	2.05e-45	144
Msa0573350	AT1G07770.2	52.000	125	60	5	129	6	130	2.05e-45	144
Msa0573350	AT1G07770.3	52.000	125	60	5	129	6	130	2.05e-45	144
Msa0573350	AT1G07770.1	52.000	125	60	5	129	6	130	2.05e-45	144
Msa0573350	AT3G46040.1	50.400	125	62	5	129	6	130	2.87e-44	141

Find 64 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTCGTTTACCTTGTTATTT+AGG	0.207524	4_1:-76541030	Msa0573350:three_prime_UTR
ATCACAATCTTTGTGGAAAT+TGG	0.217738	4_1:-76540867	Msa0573350:three_prime_UTR
TCTTAACTCTTCAGAACTTT+TGG	0.226678	4_1:+76542417	None:intergenic
CTGTGATCCTCCCCACTCTA+TGG	0.263185	4_1:+76541439	None:intergenic
GAAGAGATAACATTGGAAAT+AGG	0.265767	4_1:+76542098	None:intergenic
TACAACTCCTGATGGTGTTT+TGG	0.307095	4_1:-76541115	Msa0573350:CDS
AATGTAGGTGGTCAGGTTCT+TGG	0.331557	4_1:-76541069	Msa0573350:CDS
AAATCCATTGAAAGCTTATC+AGG	0.331884	4_1:+76540982	None:intergenic
ATCGAGTGAGAAAGAGAAAT+GGG	0.386148	4_1:-76542197	Msa0573350:exon
AGGATATATCAAGGACTTTC+AGG	0.389863	4_1:-76541472	Msa0573350:CDS
CCTTTGCCTTGAGGTCTTGT+CGG	0.398017	4_1:+76541373	None:intergenic
ATCATGAAGAGGCCGCAAAA+AGG	0.404793	4_1:-76541092	Msa0573350:CDS
GTTCGTTAATCGTGAAATAG+TGG	0.410013	4_1:+76542281	None:intergenic
GTTTCCTGATAAGCTTTCAA+TGG	0.417059	4_1:-76540986	Msa0573350:three_prime_UTR
TGAGGTCTTGTCGGTACGTA+AGG	0.430606	4_1:+76541382	None:intergenic
GATCGAGTGAGAAAGAGAAA+TGG	0.452370	4_1:-76542198	Msa0573350:exon
TGTGATCCTCCCCACTCTAT+GGG	0.457890	4_1:+76541440	None:intergenic
ATTGCAGCGTCGCGTGGTAG+CGG	0.459991	4_1:-76542333	Msa0573350:five_prime_UTR
TTCAACATTGATTATCCTCT+AGG	0.463340	4_1:+76540659	None:intergenic
AATAATAGACTAGACTTGAA+TGG	0.465985	4_1:-76540830	Msa0573350:three_prime_UTR
CGAACAAAACCGTTCTAGCT+TGG	0.470138	4_1:-76542263	Msa0573350:five_prime_UTR
GAACGATGCGTTGAGGAGTA+TGG	0.475978	4_1:-76542162	Msa0573350:CDS
GAACACTCTTCCAACACATC+AGG	0.488180	4_1:-76541331	Msa0573350:intron
TCATGATCCAAAACACCATC+AGG	0.488311	4_1:+76541108	None:intergenic
AAGAAAAGAAGAGATAACAT+TGG	0.493444	4_1:+76542091	None:intergenic
GAGAAAGAGAAATGGGGAGA+AGG	0.505773	4_1:-76542190	Msa0573350:exon
CATTAACCAACCTGATGTGT+TGG	0.507241	4_1:+76541321	None:intergenic
GCTTGGCTTTGACATACTGT+TGG	0.516304	4_1:-76542246	Msa0573350:five_prime_UTR
GCGTTGGATCACAATCTTTG+TGG	0.531472	4_1:-76540874	Msa0573350:three_prime_UTR
GCAGCGTCGCGTGGTAGCGG+CGG	0.533603	4_1:-76542330	Msa0573350:five_prime_UTR
AACTGCCACATAATTCATAC+AGG	0.539779	4_1:+76540907	None:intergenic
ATTCAATATCCTTTGCCTTG+AGG	0.544391	4_1:+76541364	None:intergenic
TATCCACCAGGCGACAAGGT+TGG	0.546287	4_1:+76540627	None:intergenic
TTTGTCCTGTATGAATTATG+TGG	0.561597	4_1:-76540912	Msa0573350:three_prime_UTR
GAAGAGAGGCAAAGCTATGG+TGG	0.562394	4_1:-76542129	Msa0573350:CDS
AGATTACAACTAAGATGATA+CGG	0.572731	4_1:+76540804	None:intergenic
GCAGTTCATGCATGATGCGT+TGG	0.574386	4_1:-76540890	Msa0573350:three_prime_UTR
ATGTCAAAGCCAAGCTAGAA+CGG	0.574745	4_1:+76542254	None:intergenic
GTGTATGATCCCCATAGAGT+GGG	0.576109	4_1:-76541450	Msa0573350:CDS
CATGTTGGCAGGATATATCA+AGG	0.581279	4_1:-76541481	Msa0573350:intron
ACTTAGCTGAAGACAGTGAC+TGG	0.585077	4_1:+76541007	None:intergenic
GAGGTCTTGTCGGTACGTAA+GGG	0.585892	4_1:+76541383	None:intergenic
TCGAGTGAGAAAGAGAAATG+GGG	0.585958	4_1:-76542196	Msa0573350:exon
AGAAAACTAGTGTTGCAGAA+TGG	0.589693	4_1:+76540732	None:intergenic
GTTCAAAGAGGGTTGAAAGA+CGG	0.593795	4_1:-76542364	Msa0573350:five_prime_UTR
ATAGAGATTGCAGCGTCGCG+TGG	0.608085	4_1:-76542339	Msa0573350:five_prime_UTR
TGAGAAGAGAGGCAAAGCTA+TGG	0.613395	4_1:-76542132	Msa0573350:CDS
GGTGTATGATCCCCATAGAG+TGG	0.614660	4_1:-76541451	Msa0573350:CDS
AAAATATCCACCAGGCGACA+AGG	0.616897	4_1:+76540623	None:intergenic
AGGTAGAATTAACGATTGCA+AGG	0.617470	4_1:-76541406	Msa0573350:CDS
ATACTGTTGGTGAAAACTAT+CGG	0.628180	4_1:-76542233	Msa0573350:five_prime_UTR
TACGTACCGACAAGACCTCA+AGG	0.647236	4_1:-76541379	Msa0573350:CDS
CCGACAAGACCTCAAGGCAA+AGG	0.651183	4_1:-76541373	Msa0573350:CDS
GGATACTGAACGATGCGTTG+AGG	0.657571	4_1:-76542169	Msa0573350:CDS
AGGATCACAGTTGAACTACA+AGG	0.660202	4_1:-76541426	Msa0573350:CDS
AGAATAATATATCATCCTAG+AGG	0.668397	4_1:-76540674	Msa0573350:three_prime_UTR
ATGGTGAATGCTGAGAAGAG+AGG	0.672519	4_1:-76542143	Msa0573350:CDS
AGTGACTGGCCTAAATAACA+AGG	0.673320	4_1:+76541021	None:intergenic
GTTGTGATTACAACTCCTGA+TGG	0.673437	4_1:-76541123	Msa0573350:CDS
GTGATCCTCCCCACTCTATG+GGG	0.676832	4_1:+76541441	None:intergenic
TGTATGATCCCCATAGAGTG+GGG	0.683001	4_1:-76541449	Msa0573350:CDS
TGAAATAGTGGTGTTGCCAG+TGG	0.689997	4_1:+76542293	None:intergenic
ATGATCCCCATAGAGTGGGG+AGG	0.698167	4_1:-76541446	Msa0573350:CDS
CTTCAAATCATGAAACACCG+CGG	0.732704	4_1:-76542071	Msa0573350:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTAAAGATATTTTTAG+TGG	-	chr4_1:76541213-76541232	Msa0573350:intron	10.0%
!!!	ATTTTTAAAGATATTTTTAG+TGG	-	chr4_1:76541213-76541232	Msa0573350:intron	10.0%
!!	AACACTAAATAAAAACAAAA+CGG	+	chr4_1:76541757-76541776	None:intergenic	15.0%
!!!	AGAATTTAAAATATAAAAGC+TGG	+	chr4_1:76541829-76541848	None:intergenic	15.0%
!!	AACACTAAATAAAAACAAAA+CGG	+	chr4_1:76541757-76541776	None:intergenic	15.0%
!!!	AGAATTTAAAATATAAAAGC+TGG	+	chr4_1:76541829-76541848	None:intergenic	15.0%
!!	TGTCTTAATTAATGGAATTT+GGG	+	chr4_1:76541148-76541167	None:intergenic	20.0%
!!	ATGTCTTAATTAATGGAATT+TGG	+	chr4_1:76541149-76541168	None:intergenic	20.0%
!!	CTAATGTATGTCTTAATTAA+TGG	+	chr4_1:76541156-76541175	None:intergenic	20.0%
!!	CATTAATTAAGACATACATT+AGG	-	chr4_1:76541154-76541173	Msa0573350:intron	20.0%
!!	TTACTAATAGATATGAGTAA+AGG	-	chr4_1:76541855-76541874	Msa0573350:intron	20.0%
!!	TGTCTTAATTAATGGAATTT+GGG	+	chr4_1:76541148-76541167	None:intergenic	20.0%
!!	ATGTCTTAATTAATGGAATT+TGG	+	chr4_1:76541149-76541168	None:intergenic	20.0%
!!	CTAATGTATGTCTTAATTAA+TGG	+	chr4_1:76541156-76541175	None:intergenic	20.0%
!!	CATTAATTAAGACATACATT+AGG	-	chr4_1:76541154-76541173	Msa0573350:intron	20.0%
!!	TTACTAATAGATATGAGTAA+AGG	-	chr4_1:76541855-76541874	Msa0573350:intron	20.0%
!	AGAGAAAAAAAAGTTCAAAG+AGG	-	chr4_1:76540672-76540691	Msa0573350:three_prime_UTR	25.0%
!	GAGAAAAAAAAGTTCAAAGA+GGG	-	chr4_1:76540673-76540692	Msa0573350:three_prime_UTR	25.0%
!	AAGAAAAGAAGAGATAACAT+TGG	+	chr4_1:76540960-76540979	None:intergenic	25.0%
!	AATTCAAACAAATATTACCG+CGG	+	chr4_1:76540997-76541016	None:intergenic	25.0%
!	TTTCATACTCATAAGATGAA+GGG	+	chr4_1:76541047-76541066	None:intergenic	25.0%
!	ATTTCATACTCATAAGATGA+AGG	+	chr4_1:76541048-76541067	None:intergenic	25.0%
!!!	TGTGTTTTGGATAATTCATT+AGG	-	chr4_1:76541097-76541116	Msa0573350:CDS	25.0%
!	TTACTTCCATTATCTCAAAT+TGG	-	chr4_1:76541330-76541349	Msa0573350:intron	25.0%
!	TCATATCTCATGAAAAGAAA+TGG	-	chr4_1:76541398-76541417	Msa0573350:CDS	25.0%
!	TAATTGTTGGAAAATAACCA+TGG	+	chr4_1:76541427-76541446	None:intergenic	25.0%
!	ATAGATATGAGTAAAGGAAA+AGG	-	chr4_1:76541861-76541880	Msa0573350:intron	25.0%
!!!	TTTTATTTATCTTGATGCAG+TGG	-	chr4_1:76541896-76541915	Msa0573350:intron	25.0%
!	TTTATTTATCTTGATGCAGT+GGG	-	chr4_1:76541897-76541916	Msa0573350:intron	25.0%
!	AATAATAGACTAGACTTGAA+TGG	-	chr4_1:76542218-76542237	Msa0573350:five_prime_UTR	25.0%
!	AGATTACAACTAAGATGATA+CGG	+	chr4_1:76542247-76542266	None:intergenic	25.0%
!	AGAATAATATATCATCCTAG+AGG	-	chr4_1:76542374-76542393	Msa0573350:five_prime_UTR	25.0%
!	AGAGAAAAAAAAGTTCAAAG+AGG	-	chr4_1:76540672-76540691	Msa0573350:three_prime_UTR	25.0%
!	GAGAAAAAAAAGTTCAAAGA+GGG	-	chr4_1:76540673-76540692	Msa0573350:three_prime_UTR	25.0%
!	AAGAAAAGAAGAGATAACAT+TGG	+	chr4_1:76540960-76540979	None:intergenic	25.0%
!	AATTCAAACAAATATTACCG+CGG	+	chr4_1:76540997-76541016	None:intergenic	25.0%
!	TTTCATACTCATAAGATGAA+GGG	+	chr4_1:76541047-76541066	None:intergenic	25.0%
!	ATTTCATACTCATAAGATGA+AGG	+	chr4_1:76541048-76541067	None:intergenic	25.0%
!!!	TGTGTTTTGGATAATTCATT+AGG	-	chr4_1:76541097-76541116	Msa0573350:CDS	25.0%
!	TTACTTCCATTATCTCAAAT+TGG	-	chr4_1:76541330-76541349	Msa0573350:intron	25.0%
!	TCATATCTCATGAAAAGAAA+TGG	-	chr4_1:76541398-76541417	Msa0573350:CDS	25.0%
!	TAATTGTTGGAAAATAACCA+TGG	+	chr4_1:76541427-76541446	None:intergenic	25.0%
!	ATAGATATGAGTAAAGGAAA+AGG	-	chr4_1:76541861-76541880	Msa0573350:intron	25.0%
!!!	TTTTATTTATCTTGATGCAG+TGG	-	chr4_1:76541896-76541915	Msa0573350:intron	25.0%
!	TTTATTTATCTTGATGCAGT+GGG	-	chr4_1:76541897-76541916	Msa0573350:intron	25.0%
!	AATAATAGACTAGACTTGAA+TGG	-	chr4_1:76542218-76542237	Msa0573350:five_prime_UTR	25.0%
!	AGATTACAACTAAGATGATA+CGG	+	chr4_1:76542247-76542266	None:intergenic	25.0%
!	AGAATAATATATCATCCTAG+AGG	-	chr4_1:76542374-76542393	Msa0573350:five_prime_UTR	25.0%
!	ATACTGTTGGTGAAAACTAT+CGG	-	chr4_1:76540815-76540834	Msa0573350:three_prime_UTR	30.0%
	GAAGAGATAACATTGGAAAT+AGG	+	chr4_1:76540953-76540972	None:intergenic	30.0%
!!!	TATGTATTCGTTTTTTGAGC+TGG	-	chr4_1:76541069-76541088	Msa0573350:CDS	30.0%
	ACAAATATAATCACGTGTGT+AGG	+	chr4_1:76541310-76541329	None:intergenic	30.0%
!	GTCATACCAATTTGAGATAA+TGG	+	chr4_1:76541339-76541358	None:intergenic	30.0%
!	ATTTTCCAACAATTATCAGC+TGG	-	chr4_1:76541432-76541451	Msa0573350:CDS	30.0%
	AGCATGTATATGTACATGAA+AGG	-	chr4_1:76541483-76541502	Msa0573350:intron	30.0%
	CAGTTTCTCCTATTTGTATA+TGG	-	chr4_1:76541781-76541800	Msa0573350:intron	30.0%
	AGCATTCTCCATATACAAAT+AGG	+	chr4_1:76541792-76541811	None:intergenic	30.0%
	TTATTTATCTTGATGCAGTG+GGG	-	chr4_1:76541898-76541917	Msa0573350:intron	30.0%
!!	TGTCGTTTACCTTGTTATTT+AGG	-	chr4_1:76542018-76542037	Msa0573350:intron	30.0%
	AAATCCATTGAAAGCTTATC+AGG	+	chr4_1:76542069-76542088	None:intergenic	30.0%
!	TGAAAGAATGTTTTCAGCAA+AGG	-	chr4_1:76542091-76542110	Msa0573350:CDS	30.0%
	TTTGTCCTGTATGAATTATG+TGG	-	chr4_1:76542136-76542155	Msa0573350:CDS	30.0%
	ATCACAATCTTTGTGGAAAT+TGG	-	chr4_1:76542181-76542200	Msa0573350:CDS	30.0%
!!	TTTTCTTATTTGTTTTCGCG+AGG	-	chr4_1:76542333-76542352	Msa0573350:five_prime_UTR	30.0%
!	TTCAACATTGATTATCCTCT+AGG	+	chr4_1:76542392-76542411	None:intergenic	30.0%
!	ATACTGTTGGTGAAAACTAT+CGG	-	chr4_1:76540815-76540834	Msa0573350:three_prime_UTR	30.0%
	GAAGAGATAACATTGGAAAT+AGG	+	chr4_1:76540953-76540972	None:intergenic	30.0%
!!!	TATGTATTCGTTTTTTGAGC+TGG	-	chr4_1:76541069-76541088	Msa0573350:CDS	30.0%
	ACAAATATAATCACGTGTGT+AGG	+	chr4_1:76541310-76541329	None:intergenic	30.0%
!	GTCATACCAATTTGAGATAA+TGG	+	chr4_1:76541339-76541358	None:intergenic	30.0%
!	ATTTTCCAACAATTATCAGC+TGG	-	chr4_1:76541432-76541451	Msa0573350:CDS	30.0%
	AGCATGTATATGTACATGAA+AGG	-	chr4_1:76541483-76541502	Msa0573350:intron	30.0%
	CAGTTTCTCCTATTTGTATA+TGG	-	chr4_1:76541781-76541800	Msa0573350:intron	30.0%
	AGCATTCTCCATATACAAAT+AGG	+	chr4_1:76541792-76541811	None:intergenic	30.0%
	TTATTTATCTTGATGCAGTG+GGG	-	chr4_1:76541898-76541917	Msa0573350:intron	30.0%
!!	TGTCGTTTACCTTGTTATTT+AGG	-	chr4_1:76542018-76542037	Msa0573350:intron	30.0%
	AAATCCATTGAAAGCTTATC+AGG	+	chr4_1:76542069-76542088	None:intergenic	30.0%
!	TGAAAGAATGTTTTCAGCAA+AGG	-	chr4_1:76542091-76542110	Msa0573350:CDS	30.0%
	TTTGTCCTGTATGAATTATG+TGG	-	chr4_1:76542136-76542155	Msa0573350:CDS	30.0%
	ATCACAATCTTTGTGGAAAT+TGG	-	chr4_1:76542181-76542200	Msa0573350:CDS	30.0%
!!	TTTTCTTATTTGTTTTCGCG+AGG	-	chr4_1:76542333-76542352	Msa0573350:five_prime_UTR	30.0%
!	TTCAACATTGATTATCCTCT+AGG	+	chr4_1:76542392-76542411	None:intergenic	30.0%
	GTTCGTTAATCGTGAAATAG+TGG	+	chr4_1:76540770-76540789	None:intergenic	35.0%
	ATCGAGTGAGAAAGAGAAAT+GGG	-	chr4_1:76540851-76540870	Msa0573350:three_prime_UTR	35.0%
!	TGAGCTGGATTTATGTGTTT+TGG	-	chr4_1:76541084-76541103	Msa0573350:CDS	35.0%
	GCTACATAGTTCTTGAGAAA+TGG	+	chr4_1:76541247-76541266	None:intergenic	35.0%
	ATGAAAAGAAATGGTCTCCA+TGG	-	chr4_1:76541407-76541426	Msa0573350:CDS	35.0%
	CTTATCCAGCTGATAATTGT+TGG	+	chr4_1:76541440-76541459	None:intergenic	35.0%
	AATTATCAGCTGGATAAGCA+TGG	-	chr4_1:76541442-76541461	Msa0573350:CDS	35.0%
!!	TAATTTGCTGTCGTTCATGT+TGG	-	chr4_1:76541552-76541571	Msa0573350:intron	35.0%
	AGGATATATCAAGGACTTTC+AGG	-	chr4_1:76541576-76541595	Msa0573350:intron	35.0%
	AGGTAGAATTAACGATTGCA+AGG	-	chr4_1:76541642-76541661	Msa0573350:intron	35.0%
	ATTCAATATCCTTTGCCTTG+AGG	+	chr4_1:76541687-76541706	None:intergenic	35.0%
	GTTTCCTGATAAGCTTTCAA+TGG	-	chr4_1:76542062-76542081	Msa0573350:intron	35.0%
!	AAGAATGTTTTCAGCAAAGG+AGG	-	chr4_1:76542094-76542113	Msa0573350:CDS	35.0%
	AACTGCCACATAATTCATAC+AGG	+	chr4_1:76542144-76542163	None:intergenic	35.0%
	AGAAAACTAGTGTTGCAGAA+TGG	+	chr4_1:76542319-76542338	None:intergenic	35.0%
	GTTCGTTAATCGTGAAATAG+TGG	+	chr4_1:76540770-76540789	None:intergenic	35.0%
	ATCGAGTGAGAAAGAGAAAT+GGG	-	chr4_1:76540851-76540870	Msa0573350:three_prime_UTR	35.0%
!	TGAGCTGGATTTATGTGTTT+TGG	-	chr4_1:76541084-76541103	Msa0573350:CDS	35.0%
	GCTACATAGTTCTTGAGAAA+TGG	+	chr4_1:76541247-76541266	None:intergenic	35.0%
	ATGAAAAGAAATGGTCTCCA+TGG	-	chr4_1:76541407-76541426	Msa0573350:CDS	35.0%
	CTTATCCAGCTGATAATTGT+TGG	+	chr4_1:76541440-76541459	None:intergenic	35.0%
	AATTATCAGCTGGATAAGCA+TGG	-	chr4_1:76541442-76541461	Msa0573350:CDS	35.0%
!!	TAATTTGCTGTCGTTCATGT+TGG	-	chr4_1:76541552-76541571	Msa0573350:intron	35.0%
	AGGATATATCAAGGACTTTC+AGG	-	chr4_1:76541576-76541595	Msa0573350:intron	35.0%
	AGGTAGAATTAACGATTGCA+AGG	-	chr4_1:76541642-76541661	Msa0573350:intron	35.0%
	ATTCAATATCCTTTGCCTTG+AGG	+	chr4_1:76541687-76541706	None:intergenic	35.0%
	GTTTCCTGATAAGCTTTCAA+TGG	-	chr4_1:76542062-76542081	Msa0573350:intron	35.0%
!	AAGAATGTTTTCAGCAAAGG+AGG	-	chr4_1:76542094-76542113	Msa0573350:CDS	35.0%
	AACTGCCACATAATTCATAC+AGG	+	chr4_1:76542144-76542163	None:intergenic	35.0%
	AGAAAACTAGTGTTGCAGAA+TGG	+	chr4_1:76542319-76542338	None:intergenic	35.0%
	GTTCAAAGAGGGTTGAAAGA+CGG	-	chr4_1:76540684-76540703	Msa0573350:three_prime_UTR	40.0%
	ATGTCAAAGCCAAGCTAGAA+CGG	+	chr4_1:76540797-76540816	None:intergenic	40.0%
	GATCGAGTGAGAAAGAGAAA+TGG	-	chr4_1:76540850-76540869	Msa0573350:three_prime_UTR	40.0%
	TCGAGTGAGAAAGAGAAATG+GGG	-	chr4_1:76540852-76540871	Msa0573350:three_prime_UTR	40.0%
	CTTCAAATCATGAAACACCG+CGG	-	chr4_1:76540977-76540996	Msa0573350:three_prime_UTR	40.0%
	CTCAAATTGGTATGACGTTG+AGG	-	chr4_1:76541343-76541362	Msa0573350:CDS	40.0%
	CATGTTGGCAGGATATATCA+AGG	-	chr4_1:76541567-76541586	Msa0573350:intron	40.0%
	AGGATCACAGTTGAACTACA+AGG	-	chr4_1:76541622-76541641	Msa0573350:intron	40.0%
	CATTAACCAACCTGATGTGT+TGG	+	chr4_1:76541730-76541749	None:intergenic	40.0%
	GTTGTGATTACAACTCCTGA+TGG	-	chr4_1:76541925-76541944	Msa0573350:intron	40.0%
!!	TACAACTCCTGATGGTGTTT+TGG	-	chr4_1:76541933-76541952	Msa0573350:intron	40.0%
	TCATGATCCAAAACACCATC+AGG	+	chr4_1:76541943-76541962	None:intergenic	40.0%
!!	TGGTGTTTTGGATCATGAAG+AGG	-	chr4_1:76541945-76541964	Msa0573350:intron	40.0%
!	ACCACCTACATTCCTTTTTG+CGG	+	chr4_1:76541971-76541990	None:intergenic	40.0%
	AAAAAGGAATGTAGGTGGTC+AGG	-	chr4_1:76541972-76541991	Msa0573350:intron	40.0%
!!	AGTGACTGGCCTAAATAACA+AGG	+	chr4_1:76542030-76542049	None:intergenic	40.0%
	GTTCAAAGAGGGTTGAAAGA+CGG	-	chr4_1:76540684-76540703	Msa0573350:three_prime_UTR	40.0%
	ATGTCAAAGCCAAGCTAGAA+CGG	+	chr4_1:76540797-76540816	None:intergenic	40.0%
	GATCGAGTGAGAAAGAGAAA+TGG	-	chr4_1:76540850-76540869	Msa0573350:three_prime_UTR	40.0%
	TCGAGTGAGAAAGAGAAATG+GGG	-	chr4_1:76540852-76540871	Msa0573350:three_prime_UTR	40.0%
	CTTCAAATCATGAAACACCG+CGG	-	chr4_1:76540977-76540996	Msa0573350:three_prime_UTR	40.0%
	CTCAAATTGGTATGACGTTG+AGG	-	chr4_1:76541343-76541362	Msa0573350:CDS	40.0%
	CATGTTGGCAGGATATATCA+AGG	-	chr4_1:76541567-76541586	Msa0573350:intron	40.0%
	AGGATCACAGTTGAACTACA+AGG	-	chr4_1:76541622-76541641	Msa0573350:intron	40.0%
	CATTAACCAACCTGATGTGT+TGG	+	chr4_1:76541730-76541749	None:intergenic	40.0%
	GTTGTGATTACAACTCCTGA+TGG	-	chr4_1:76541925-76541944	Msa0573350:intron	40.0%
!!	TACAACTCCTGATGGTGTTT+TGG	-	chr4_1:76541933-76541952	Msa0573350:intron	40.0%
	TCATGATCCAAAACACCATC+AGG	+	chr4_1:76541943-76541962	None:intergenic	40.0%
!!	TGGTGTTTTGGATCATGAAG+AGG	-	chr4_1:76541945-76541964	Msa0573350:intron	40.0%
!	ACCACCTACATTCCTTTTTG+CGG	+	chr4_1:76541971-76541990	None:intergenic	40.0%
	AAAAAGGAATGTAGGTGGTC+AGG	-	chr4_1:76541972-76541991	Msa0573350:intron	40.0%
!!	AGTGACTGGCCTAAATAACA+AGG	+	chr4_1:76542030-76542049	None:intergenic	40.0%
!!	TGAAATAGTGGTGTTGCCAG+TGG	+	chr4_1:76540758-76540777	None:intergenic	45.0%
!	CGAACAAAACCGTTCTAGCT+TGG	-	chr4_1:76540785-76540804	Msa0573350:three_prime_UTR	45.0%
!!	GCTTGGCTTTGACATACTGT+TGG	-	chr4_1:76540802-76540821	Msa0573350:three_prime_UTR	45.0%
	GAGAAAGAGAAATGGGGAGA+AGG	-	chr4_1:76540858-76540877	Msa0573350:three_prime_UTR	45.0%
	ATGGTGAATGCTGAGAAGAG+AGG	-	chr4_1:76540905-76540924	Msa0573350:three_prime_UTR	45.0%
	TGAGAAGAGAGGCAAAGCTA+TGG	-	chr4_1:76540916-76540935	Msa0573350:three_prime_UTR	45.0%
	ATTGGTATGACGTTGAGGTG+TGG	-	chr4_1:76541348-76541367	Msa0573350:CDS	45.0%
	GTGTATGATCCCCATAGAGT+GGG	-	chr4_1:76541598-76541617	Msa0573350:intron	45.0%
	TGTATGATCCCCATAGAGTG+GGG	-	chr4_1:76541599-76541618	Msa0573350:intron	45.0%
	GAACACTCTTCCAACACATC+AGG	-	chr4_1:76541717-76541736	Msa0573350:intron	45.0%
	ACTCTTCCAACACATCAGGT+TGG	-	chr4_1:76541721-76541740	Msa0573350:intron	45.0%
	ATCATGAAGAGGCCGCAAAA+AGG	-	chr4_1:76541956-76541975	Msa0573350:intron	45.0%
	AATGTAGGTGGTCAGGTTCT+TGG	-	chr4_1:76541979-76541998	Msa0573350:intron	45.0%
	ACTTAGCTGAAGACAGTGAC+TGG	+	chr4_1:76542044-76542063	None:intergenic	45.0%
	GCGTTGGATCACAATCTTTG+TGG	-	chr4_1:76542174-76542193	Msa0573350:CDS	45.0%
!!	TGAAATAGTGGTGTTGCCAG+TGG	+	chr4_1:76540758-76540777	None:intergenic	45.0%
!	CGAACAAAACCGTTCTAGCT+TGG	-	chr4_1:76540785-76540804	Msa0573350:three_prime_UTR	45.0%
!!	GCTTGGCTTTGACATACTGT+TGG	-	chr4_1:76540802-76540821	Msa0573350:three_prime_UTR	45.0%
	GAGAAAGAGAAATGGGGAGA+AGG	-	chr4_1:76540858-76540877	Msa0573350:three_prime_UTR	45.0%
	ATGGTGAATGCTGAGAAGAG+AGG	-	chr4_1:76540905-76540924	Msa0573350:three_prime_UTR	45.0%
	TGAGAAGAGAGGCAAAGCTA+TGG	-	chr4_1:76540916-76540935	Msa0573350:three_prime_UTR	45.0%
	ATTGGTATGACGTTGAGGTG+TGG	-	chr4_1:76541348-76541367	Msa0573350:CDS	45.0%
	GTGTATGATCCCCATAGAGT+GGG	-	chr4_1:76541598-76541617	Msa0573350:intron	45.0%
	TGTATGATCCCCATAGAGTG+GGG	-	chr4_1:76541599-76541618	Msa0573350:intron	45.0%
	GAACACTCTTCCAACACATC+AGG	-	chr4_1:76541717-76541736	Msa0573350:intron	45.0%
	ACTCTTCCAACACATCAGGT+TGG	-	chr4_1:76541721-76541740	Msa0573350:intron	45.0%
	ATCATGAAGAGGCCGCAAAA+AGG	-	chr4_1:76541956-76541975	Msa0573350:intron	45.0%
	AATGTAGGTGGTCAGGTTCT+TGG	-	chr4_1:76541979-76541998	Msa0573350:intron	45.0%
	ACTTAGCTGAAGACAGTGAC+TGG	+	chr4_1:76542044-76542063	None:intergenic	45.0%
	GCGTTGGATCACAATCTTTG+TGG	-	chr4_1:76542174-76542193	Msa0573350:CDS	45.0%
!!!	TATTATTAATTTTAGATTTT+TGG	-	chr4_1:76541178-76541197	Msa0573350:intron	5.0%
!!!	TATTATTAATTTTAGATTTT+TGG	-	chr4_1:76541178-76541197	Msa0573350:intron	5.0%
!	GGCGAACATTTTCTGACCAC+TGG	-	chr4_1:76540739-76540758	Msa0573350:three_prime_UTR	50.0%
	GGATACTGAACGATGCGTTG+AGG	-	chr4_1:76540879-76540898	Msa0573350:three_prime_UTR	50.0%
	GAACGATGCGTTGAGGAGTA+TGG	-	chr4_1:76540886-76540905	Msa0573350:three_prime_UTR	50.0%
	GAAGAGAGGCAAAGCTATGG+TGG	-	chr4_1:76540919-76540938	Msa0573350:three_prime_UTR	50.0%
	TTGCTGTCGTTCATGTTGGC+AGG	-	chr4_1:76541556-76541575	Msa0573350:intron	50.0%
	GGTGTATGATCCCCATAGAG+TGG	-	chr4_1:76541597-76541616	Msa0573350:intron	50.0%
	TGTGATCCTCCCCACTCTAT+GGG	+	chr4_1:76541611-76541630	None:intergenic	50.0%
!	GAGGTCTTGTCGGTACGTAA+GGG	+	chr4_1:76541668-76541687	None:intergenic	50.0%
!	TGAGGTCTTGTCGGTACGTA+AGG	+	chr4_1:76541669-76541688	None:intergenic	50.0%
!	TACGTACCGACAAGACCTCA+AGG	-	chr4_1:76541669-76541688	Msa0573350:intron	50.0%
!	CCTTTGCCTTGAGGTCTTGT+CGG	+	chr4_1:76541678-76541697	None:intergenic	50.0%
	GAGGCCGCAAAAAGGAATGT+AGG	-	chr4_1:76541964-76541983	Msa0573350:intron	50.0%
	GCCGCAAAAAGGAATGTAGG+TGG	-	chr4_1:76541967-76541986	Msa0573350:intron	50.0%
	GCAGTTCATGCATGATGCGT+TGG	-	chr4_1:76542158-76542177	Msa0573350:CDS	50.0%
!	GGCGAACATTTTCTGACCAC+TGG	-	chr4_1:76540739-76540758	Msa0573350:three_prime_UTR	50.0%
	GGATACTGAACGATGCGTTG+AGG	-	chr4_1:76540879-76540898	Msa0573350:three_prime_UTR	50.0%
	GAACGATGCGTTGAGGAGTA+TGG	-	chr4_1:76540886-76540905	Msa0573350:three_prime_UTR	50.0%
	GAAGAGAGGCAAAGCTATGG+TGG	-	chr4_1:76540919-76540938	Msa0573350:three_prime_UTR	50.0%
	TTGCTGTCGTTCATGTTGGC+AGG	-	chr4_1:76541556-76541575	Msa0573350:intron	50.0%
	GGTGTATGATCCCCATAGAG+TGG	-	chr4_1:76541597-76541616	Msa0573350:intron	50.0%
	TGTGATCCTCCCCACTCTAT+GGG	+	chr4_1:76541611-76541630	None:intergenic	50.0%
!	GAGGTCTTGTCGGTACGTAA+GGG	+	chr4_1:76541668-76541687	None:intergenic	50.0%
!	TGAGGTCTTGTCGGTACGTA+AGG	+	chr4_1:76541669-76541688	None:intergenic	50.0%
!	TACGTACCGACAAGACCTCA+AGG	-	chr4_1:76541669-76541688	Msa0573350:intron	50.0%
!	CCTTTGCCTTGAGGTCTTGT+CGG	+	chr4_1:76541678-76541697	None:intergenic	50.0%
	GAGGCCGCAAAAAGGAATGT+AGG	-	chr4_1:76541964-76541983	Msa0573350:intron	50.0%
	GCCGCAAAAAGGAATGTAGG+TGG	-	chr4_1:76541967-76541986	Msa0573350:intron	50.0%
	GCAGTTCATGCATGATGCGT+TGG	-	chr4_1:76542158-76542177	Msa0573350:CDS	50.0%
	ATAGAGATTGCAGCGTCGCG+TGG	-	chr4_1:76540709-76540728	Msa0573350:three_prime_UTR	55.0%
	ATGATCCCCATAGAGTGGGG+AGG	-	chr4_1:76541602-76541621	Msa0573350:intron	55.0%
	GTGATCCTCCCCACTCTATG+GGG	+	chr4_1:76541610-76541629	None:intergenic	55.0%
	CTGTGATCCTCCCCACTCTA+TGG	+	chr4_1:76541612-76541631	None:intergenic	55.0%
	CCGACAAGACCTCAAGGCAA+AGG	-	chr4_1:76541675-76541694	Msa0573350:intron	55.0%
	ATAGAGATTGCAGCGTCGCG+TGG	-	chr4_1:76540709-76540728	Msa0573350:three_prime_UTR	55.0%
	ATGATCCCCATAGAGTGGGG+AGG	-	chr4_1:76541602-76541621	Msa0573350:intron	55.0%
	GTGATCCTCCCCACTCTATG+GGG	+	chr4_1:76541610-76541629	None:intergenic	55.0%
	CTGTGATCCTCCCCACTCTA+TGG	+	chr4_1:76541612-76541631	None:intergenic	55.0%
	CCGACAAGACCTCAAGGCAA+AGG	-	chr4_1:76541675-76541694	Msa0573350:intron	55.0%
	ATTGCAGCGTCGCGTGGTAG+CGG	-	chr4_1:76540715-76540734	Msa0573350:three_prime_UTR	60.0%
	ATTGCAGCGTCGCGTGGTAG+CGG	-	chr4_1:76540715-76540734	Msa0573350:three_prime_UTR	60.0%
!!	GCAGCGTCGCGTGGTAGCGG+CGG	-	chr4_1:76540718-76540737	Msa0573350:three_prime_UTR	75.0%
!!	GCAGCGTCGCGTGGTAGCGG+CGG	-	chr4_1:76540718-76540737	Msa0573350:three_prime_UTR	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76540634	76542436	76540634	ID=Msa0573350;Name=Msa0573350
chr4_1	mRNA	76540634	76542436	76540634	ID=Msa0573350-mRNA-1;Parent=Msa0573350;Name=Msa0573350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=235\|1\|1\|1\|1\|1\|3\|422\|129
chr4_1	exon	76540634	76541154	76540634	ID=Msa0573350-mRNA-1:exon:26804;Parent=Msa0573350-mRNA-1
chr4_1	exon	76541332	76541492	76541332	ID=Msa0573350-mRNA-1:exon:26803;Parent=Msa0573350-mRNA-1
chr4_1	exon	76542072	76542436	76542072	ID=Msa0573350-mRNA-1:exon:26802;Parent=Msa0573350-mRNA-1
chr4_1	five_prime_UTR	76542202	76542436	76542202	ID=Msa0573350-mRNA-1:five_prime_utr;Parent=Msa0573350-mRNA-1
chr4_1	CDS	76542072	76542201	76542072	ID=Msa0573350-mRNA-1:cds;Parent=Msa0573350-mRNA-1
chr4_1	CDS	76541332	76541492	76541332	ID=Msa0573350-mRNA-1:cds;Parent=Msa0573350-mRNA-1
chr4_1	CDS	76541056	76541154	76541056	ID=Msa0573350-mRNA-1:cds;Parent=Msa0573350-mRNA-1
chr4_1	three_prime_UTR	76540634	76541055	76540634	ID=Msa0573350-mRNA-1:three_prime_utr;Parent=Msa0573350-mRNA-1

Gene Sequence

>Msa0573350

ATGGGGAGAAGGATACTGAACGATGCGTTGAGGAGTATGGTGAATGCTGAGAAGAGAGGCAAAGCTATGGTGGAGCTTAAACCTATTTCCAATGTTATCTCTTCTTTTCTTCAAATCATGAAACACCGCGGATATATCAAGGACTTTCAGGTGTATGATCCCCATAGAGTGGGGAGGATCACAGTTGAACTACAAGGTAGAATTAACGATTGCAAGGCCCTTACGTACCGACAAGACCTCAAGGCAAAGGATATTGAATCTTACAGATTGAACACTCTTCCAACACATCAGTGGGGTTATGTTGTGATTACAACTCCTGATGGTGTTTTGGATCATGAAGAGGCCGCAAAAAGGAATGTAGGTGGTCAGGTTCTTGGTTACTTTCACTAA

Protein sequence

>Msa0573350

MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLQIMKHRGYIKDFQVYDPHRVGRITVELQGRINDCKALTYRQDLKAKDIESYRLNTLPTHQWGYVVITTPDGVLDHEEAAKRNVGGQVLGYFH*