AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432210 MtrunA17_Chr3g0137181 100.000 51 0 0 13 63 1 51 2.08e-32 105
Msa0432210 MtrunA17_Chr1g0149761 100.000 51 0 0 13 63 1 51 2.08e-32 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432210 AT4G31985.1 90.196 51 5 0 13 63 1 51 1.91e-29 98.6
Msa0432210 AT3G02190.1 88.235 51 6 0 13 63 1 51 4.33e-28 95.1
Msa0432210 AT2G25210.1 90.909 44 4 0 20 63 1 44 6.17e-24 84.7

Find 36 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTGTAGTTAATTAA+AGG 0.251556 3_2:+84429724 Msa0432210:three_prime_UTR
ATAGGCTATTCATTGTGATA+TGG 0.254961 3_2:+84429841 Msa0432210:three_prime_UTR
ATTTAAGACAATCGATGTTT+TGG 0.282559 3_2:+84429645 Msa0432210:three_prime_UTR
GTGCAGCCGTCGAGCATTTC+CGG 0.303652 3_2:+84429203 Msa0432210:intron
ATTCGTAATCAAGAAGAAAT+TGG 0.321220 3_2:+84429345 Msa0432210:CDS
GGGATTTGAGTTCATTCTAT+AGG 0.347390 3_2:+84429823 Msa0432210:three_prime_UTR
AATGGCATACATCACCAATA+AGG 0.381130 3_2:-84429957 None:intergenic
CCGGAGGCAAGGATCGAAAA+TGG 0.389081 3_2:+84429222 Msa0432210:CDS
GGCATTGTAATGTTATACTT+TGG 0.392128 3_2:+84429666 Msa0432210:three_prime_UTR
TTATTTCATCAAGGGAAATA+CGG 0.394107 3_2:+84429868 Msa0432210:three_prime_UTR
TAGGCTATTCATTGTGATAT+GGG 0.396854 3_2:+84429842 Msa0432210:three_prime_UTR
TCAAGCGAGTGCAATCAAAA+TGG 0.413755 3_2:-84429975 None:intergenic
CGAAGAAGATGAGGCAGAAC+AGG 0.428707 3_2:+84429368 Msa0432210:CDS
AGAACAGGCCCATCCCTTAC+TGG 0.442668 3_2:+84429383 Msa0432210:CDS
TCCCTTACTGGATCCGTATG+AGG 0.452674 3_2:+84429395 Msa0432210:CDS
CACTGGCGCCGTACCAAGCT+CGG 0.478359 3_2:+84429551 Msa0432210:CDS
AACCCTAATAGTTCAAGAAA+AGG 0.479806 3_2:-84429605 None:intergenic
TATTTCATCAAGGGAAATAC+GGG 0.488022 3_2:+84429869 Msa0432210:three_prime_UTR
ACAATGCTAAGCGCCGTCAC+TGG 0.497185 3_2:+84429534 Msa0432210:CDS
CTCAAAATCCGAGCTTGGTA+CGG 0.513650 3_2:-84429559 None:intergenic
GCTTGGTACGGCGCCAGTGA+CGG 0.518206 3_2:-84429547 None:intergenic
TGAGGACTGACAACACCATC+AGG 0.522876 3_2:+84429413 Msa0432210:CDS
GTCCTCATACGGATCCAGTA+AGG 0.528387 3_2:-84429397 None:intergenic
GGACAAAACGCGGCAAAGCA+AGG 0.533748 3_2:-84429584 None:intergenic
GTCGAGCATTTCCGGAGGCA+AGG 0.547294 3_2:+84429211 Msa0432210:CDS
TGGTGTTGTCAGTCCTCATA+CGG 0.570137 3_2:-84429408 None:intergenic
ATACGGATCCAGTAAGGGAT+GGG 0.581906 3_2:-84429391 None:intergenic
AGGACCTCAAAATCCGAGCT+TGG 0.583429 3_2:-84429564 None:intergenic
ACAATTTCCTAGTATACAGT+AGG 0.587677 3_2:-84429901 None:intergenic
AGAAATTGGCGAAGAAGATG+AGG 0.597939 3_2:+84429359 Msa0432210:CDS
ATTACGAATGTCTTGTGTGA+CGG 0.598814 3_2:-84429331 None:intergenic
TCCTCATACGGATCCAGTAA+GGG 0.602358 3_2:-84429396 None:intergenic
CATACGGATCCAGTAAGGGA+TGG 0.605764 3_2:-84429392 None:intergenic
TTGCCTCCGGAAATGCTCGA+CGG 0.662148 3_2:-84429209 None:intergenic
TTCAAGAAAAGGACAAAACG+CGG 0.690502 3_2:-84429594 None:intergenic
CAGCCGTCGAGCATTTCCGG+AGG 0.690561 3_2:+84429206 Msa0432210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATTTTTAATTTATTTC+TGG + chr3_2:84429022-84429041 Msa0432210:intron 10.0%
!!! GAATATTTTTAATTTATTTC+TGG + chr3_2:84429022-84429041 Msa0432210:intron 10.0%
!!! TTTTTATTTTTTCCTCTTTT+AGG + chr3_2:84429510-84429529 Msa0432210:intron 15.0%
!! AACTTATTGTAGTTAATTAA+AGG + chr3_2:84429724-84429743 Msa0432210:three_prime_UTR 15.0%
!! AAATCCGAATTAATTAAAAA+AGG - chr3_2:84429756-84429775 None:intergenic 15.0%
!!! TAGGTTTTATATATTTTTGT+TGG + chr3_2:84429932-84429951 Msa0432210:three_prime_UTR 15.0%
!!! TTTTTATTTTTTCCTCTTTT+AGG + chr3_2:84429510-84429529 Msa0432210:intron 15.0%
!! AACTTATTGTAGTTAATTAA+AGG + chr3_2:84429724-84429743 Msa0432210:three_prime_UTR 15.0%
!! AAATCCGAATTAATTAAAAA+AGG - chr3_2:84429756-84429775 None:intergenic 15.0%
!!! TAGGTTTTATATATTTTTGT+TGG + chr3_2:84429932-84429951 Msa0432210:three_prime_UTR 15.0%
!!! CATTCAAAACTAAAATTTTG+AGG + chr3_2:84428969-84428988 Msa0432210:intron 20.0%
!! AAAAGTTGTTATAGACAAAA+AGG + chr3_2:84428996-84429015 Msa0432210:intron 20.0%
!! AAAGTTGTTATAGACAAAAA+GGG + chr3_2:84428997-84429016 Msa0432210:intron 20.0%
!!! TTTATTTCTGGAAAAATTTG+TGG + chr3_2:84429034-84429053 Msa0432210:intron 20.0%
!!! AAAGATTCTGAAATTAGATT+AGG + chr3_2:84429155-84429174 Msa0432210:intron 20.0%
!!! AAGATTCTGAAATTAGATTA+GGG + chr3_2:84429156-84429175 Msa0432210:intron 20.0%
!!! TATATAAGTAAGAACTTTTG+CGG + chr3_2:84429692-84429711 Msa0432210:three_prime_UTR 20.0%
!!! GACACCTTTTTTAATTAATT+CGG + chr3_2:84429749-84429768 Msa0432210:three_prime_UTR 20.0%
!!! TTATACATATTTAGTTTTGC+TGG + chr3_2:84429802-84429821 Msa0432210:three_prime_UTR 20.0%
!!! TATACATATTTAGTTTTGCT+GGG + chr3_2:84429803-84429822 Msa0432210:three_prime_UTR 20.0%
!! CAAAAATATATAAAACCTAG+AGG - chr3_2:84429931-84429950 None:intergenic 20.0%
!!! CATTCAAAACTAAAATTTTG+AGG + chr3_2:84428969-84428988 Msa0432210:intron 20.0%
!! AAAAGTTGTTATAGACAAAA+AGG + chr3_2:84428996-84429015 Msa0432210:intron 20.0%
!! AAAGTTGTTATAGACAAAAA+GGG + chr3_2:84428997-84429016 Msa0432210:intron 20.0%
!!! TTTATTTCTGGAAAAATTTG+TGG + chr3_2:84429034-84429053 Msa0432210:intron 20.0%
!!! AAAGATTCTGAAATTAGATT+AGG + chr3_2:84429155-84429174 Msa0432210:intron 20.0%
!!! AAGATTCTGAAATTAGATTA+GGG + chr3_2:84429156-84429175 Msa0432210:intron 20.0%
!!! TATATAAGTAAGAACTTTTG+CGG + chr3_2:84429692-84429711 Msa0432210:three_prime_UTR 20.0%
!!! GACACCTTTTTTAATTAATT+CGG + chr3_2:84429749-84429768 Msa0432210:three_prime_UTR 20.0%
!!! TTATACATATTTAGTTTTGC+TGG + chr3_2:84429802-84429821 Msa0432210:three_prime_UTR 20.0%
!!! TATACATATTTAGTTTTGCT+GGG + chr3_2:84429803-84429822 Msa0432210:three_prime_UTR 20.0%
!! CAAAAATATATAAAACCTAG+AGG - chr3_2:84429931-84429950 None:intergenic 20.0%
!!! AGAATAAATAAGCGGATTAT+TGG + chr3_2:84429087-84429106 Msa0432210:intron 25.0%
!!! GAATAAATAAGCGGATTATT+GGG + chr3_2:84429088-84429107 Msa0432210:intron 25.0%
! ATTCGTAATCAAGAAGAAAT+TGG + chr3_2:84429345-84429364 Msa0432210:CDS 25.0%
!!! ATTTAAGACAATCGATGTTT+TGG + chr3_2:84429645-84429664 Msa0432210:three_prime_UTR 25.0%
!!! TATGGGATTTTATTTCATCA+AGG + chr3_2:84429859-84429878 Msa0432210:three_prime_UTR 25.0%
!!! ATGGGATTTTATTTCATCAA+GGG + chr3_2:84429860-84429879 Msa0432210:three_prime_UTR 25.0%
! TTATTTCATCAAGGGAAATA+CGG + chr3_2:84429868-84429887 Msa0432210:three_prime_UTR 25.0%
!!! TATTTTTGTTGGATCCTTAT+TGG + chr3_2:84429943-84429962 Msa0432210:three_prime_UTR 25.0%
!!! AGAATAAATAAGCGGATTAT+TGG + chr3_2:84429087-84429106 Msa0432210:intron 25.0%
!!! GAATAAATAAGCGGATTATT+GGG + chr3_2:84429088-84429107 Msa0432210:intron 25.0%
! ATTCGTAATCAAGAAGAAAT+TGG + chr3_2:84429345-84429364 Msa0432210:CDS 25.0%
!!! ATTTAAGACAATCGATGTTT+TGG + chr3_2:84429645-84429664 Msa0432210:three_prime_UTR 25.0%
!!! TATGGGATTTTATTTCATCA+AGG + chr3_2:84429859-84429878 Msa0432210:three_prime_UTR 25.0%
!!! ATGGGATTTTATTTCATCAA+GGG + chr3_2:84429860-84429879 Msa0432210:three_prime_UTR 25.0%
! TTATTTCATCAAGGGAAATA+CGG + chr3_2:84429868-84429887 Msa0432210:three_prime_UTR 25.0%
!!! TATTTTTGTTGGATCCTTAT+TGG + chr3_2:84429943-84429962 Msa0432210:three_prime_UTR 25.0%
! TTTCTGGAAAAATTTGTGGT+AGG + chr3_2:84429038-84429057 Msa0432210:intron 30.0%
TGTGGTAGGAATATAGTTTA+AGG + chr3_2:84429052-84429071 Msa0432210:intron 30.0%
GTGGTAGGAATATAGTTTAA+GGG + chr3_2:84429053-84429072 Msa0432210:intron 30.0%
TGGTAGGAATATAGTTTAAG+GGG + chr3_2:84429054-84429073 Msa0432210:intron 30.0%
TATGAGGGAGAATAAATAAG+CGG + chr3_2:84429079-84429098 Msa0432210:intron 30.0%
! TTTTTCTTTGTGGGCTTTTA+CGG - chr3_2:84429120-84429139 None:intergenic 30.0%
! ACCACTATCTTTTTCTTTGT+GGG - chr3_2:84429129-84429148 None:intergenic 30.0%
! TGTCCTTTTCTTGAACTATT+AGG + chr3_2:84429602-84429621 Msa0432210:three_prime_UTR 30.0%
! GTCCTTTTCTTGAACTATTA+GGG + chr3_2:84429603-84429622 Msa0432210:three_prime_UTR 30.0%
AACCCTAATAGTTCAAGAAA+AGG - chr3_2:84429608-84429627 None:intergenic 30.0%
GGCATTGTAATGTTATACTT+TGG + chr3_2:84429666-84429685 Msa0432210:three_prime_UTR 30.0%
ATAGGCTATTCATTGTGATA+TGG + chr3_2:84429841-84429860 Msa0432210:three_prime_UTR 30.0%
TAGGCTATTCATTGTGATAT+GGG + chr3_2:84429842-84429861 Msa0432210:three_prime_UTR 30.0%
TATTTCATCAAGGGAAATAC+GGG + chr3_2:84429869-84429888 Msa0432210:three_prime_UTR 30.0%
! TTTTGTTCCTACTGTATACT+AGG + chr3_2:84429894-84429913 Msa0432210:three_prime_UTR 30.0%
ACAATTTCCTAGTATACAGT+AGG - chr3_2:84429904-84429923 None:intergenic 30.0%
!! TAGGAAATTGTTTTTCCTCT+AGG + chr3_2:84429913-84429932 Msa0432210:three_prime_UTR 30.0%
! TTTCTGGAAAAATTTGTGGT+AGG + chr3_2:84429038-84429057 Msa0432210:intron 30.0%
TGTGGTAGGAATATAGTTTA+AGG + chr3_2:84429052-84429071 Msa0432210:intron 30.0%
GTGGTAGGAATATAGTTTAA+GGG + chr3_2:84429053-84429072 Msa0432210:intron 30.0%
TGGTAGGAATATAGTTTAAG+GGG + chr3_2:84429054-84429073 Msa0432210:intron 30.0%
TATGAGGGAGAATAAATAAG+CGG + chr3_2:84429079-84429098 Msa0432210:intron 30.0%
! TTTTTCTTTGTGGGCTTTTA+CGG - chr3_2:84429120-84429139 None:intergenic 30.0%
! ACCACTATCTTTTTCTTTGT+GGG - chr3_2:84429129-84429148 None:intergenic 30.0%
! TGTCCTTTTCTTGAACTATT+AGG + chr3_2:84429602-84429621 Msa0432210:three_prime_UTR 30.0%
! GTCCTTTTCTTGAACTATTA+GGG + chr3_2:84429603-84429622 Msa0432210:three_prime_UTR 30.0%
AACCCTAATAGTTCAAGAAA+AGG - chr3_2:84429608-84429627 None:intergenic 30.0%
GGCATTGTAATGTTATACTT+TGG + chr3_2:84429666-84429685 Msa0432210:three_prime_UTR 30.0%
ATAGGCTATTCATTGTGATA+TGG + chr3_2:84429841-84429860 Msa0432210:three_prime_UTR 30.0%
TAGGCTATTCATTGTGATAT+GGG + chr3_2:84429842-84429861 Msa0432210:three_prime_UTR 30.0%
TATTTCATCAAGGGAAATAC+GGG + chr3_2:84429869-84429888 Msa0432210:three_prime_UTR 30.0%
! TTTTGTTCCTACTGTATACT+AGG + chr3_2:84429894-84429913 Msa0432210:three_prime_UTR 30.0%
ACAATTTCCTAGTATACAGT+AGG - chr3_2:84429904-84429923 None:intergenic 30.0%
!! TAGGAAATTGTTTTTCCTCT+AGG + chr3_2:84429913-84429932 Msa0432210:three_prime_UTR 30.0%
GGTAGGAATATAGTTTAAGG+GGG + chr3_2:84429055-84429074 Msa0432210:intron 35.0%
GTAGGAATATAGTTTAAGGG+GGG + chr3_2:84429056-84429075 Msa0432210:intron 35.0%
! TTTTCTTTGTGGGCTTTTAC+GGG - chr3_2:84429119-84429138 None:intergenic 35.0%
! CACCACTATCTTTTTCTTTG+TGG - chr3_2:84429130-84429149 None:intergenic 35.0%
!! TCGTTTACAAGAAGCATTCT+CGG + chr3_2:84429181-84429200 Msa0432210:intron 35.0%
ATTACGAATGTCTTGTGTGA+CGG - chr3_2:84429334-84429353 None:intergenic 35.0%
CTTAGCATTGTACCTAAAAG+AGG - chr3_2:84429525-84429544 None:intergenic 35.0%
TTCAAGAAAAGGACAAAACG+CGG - chr3_2:84429597-84429616 None:intergenic 35.0%
! GGGATTTGAGTTCATTCTAT+AGG + chr3_2:84429823-84429842 Msa0432210:three_prime_UTR 35.0%
AATGGCATACATCACCAATA+AGG - chr3_2:84429960-84429979 None:intergenic 35.0%
GGTAGGAATATAGTTTAAGG+GGG + chr3_2:84429055-84429074 Msa0432210:intron 35.0%
GTAGGAATATAGTTTAAGGG+GGG + chr3_2:84429056-84429075 Msa0432210:intron 35.0%
! TTTTCTTTGTGGGCTTTTAC+GGG - chr3_2:84429119-84429138 None:intergenic 35.0%
! CACCACTATCTTTTTCTTTG+TGG - chr3_2:84429130-84429149 None:intergenic 35.0%
!! TCGTTTACAAGAAGCATTCT+CGG + chr3_2:84429181-84429200 Msa0432210:intron 35.0%
ATTACGAATGTCTTGTGTGA+CGG - chr3_2:84429334-84429353 None:intergenic 35.0%
CTTAGCATTGTACCTAAAAG+AGG - chr3_2:84429525-84429544 None:intergenic 35.0%
TTCAAGAAAAGGACAAAACG+CGG - chr3_2:84429597-84429616 None:intergenic 35.0%
! GGGATTTGAGTTCATTCTAT+AGG + chr3_2:84429823-84429842 Msa0432210:three_prime_UTR 35.0%
AATGGCATACATCACCAATA+AGG - chr3_2:84429960-84429979 None:intergenic 35.0%
! TATAGTTTAAGGGGGGTATG+AGG + chr3_2:84429063-84429082 Msa0432210:intron 40.0%
! ATAGTTTAAGGGGGGTATGA+GGG + chr3_2:84429064-84429083 Msa0432210:intron 40.0%
GCCCACAAAGAAAAAGATAG+TGG + chr3_2:84429125-84429144 Msa0432210:intron 40.0%
!! GATTGAAGAGACGCTGATTT+GGG - chr3_2:84429252-84429271 None:intergenic 40.0%
AGCGTCTCTTCAATCGTATT+AGG + chr3_2:84429257-84429276 Msa0432210:intron 40.0%
GCGTCTCTTCAATCGTATTA+GGG + chr3_2:84429258-84429277 Msa0432210:intron 40.0%
AGAAATTGGCGAAGAAGATG+AGG + chr3_2:84429359-84429378 Msa0432210:CDS 40.0%
GAAAGGGAAAGAATACCTGA+TGG - chr3_2:84429431-84429450 None:intergenic 40.0%
AACGCGAAGAAAGAGTGAAA+GGG - chr3_2:84429447-84429466 None:intergenic 40.0%
AAACGCGAAGAAAGAGTGAA+AGG - chr3_2:84429448-84429467 None:intergenic 40.0%
! AAGAACTTTTGCGGTGTTTG+AGG + chr3_2:84429701-84429720 Msa0432210:three_prime_UTR 40.0%
TCAAGCGAGTGCAATCAAAA+TGG - chr3_2:84429978-84429997 None:intergenic 40.0%
! TATAGTTTAAGGGGGGTATG+AGG + chr3_2:84429063-84429082 Msa0432210:intron 40.0%
! ATAGTTTAAGGGGGGTATGA+GGG + chr3_2:84429064-84429083 Msa0432210:intron 40.0%
GCCCACAAAGAAAAAGATAG+TGG + chr3_2:84429125-84429144 Msa0432210:intron 40.0%
!! GATTGAAGAGACGCTGATTT+GGG - chr3_2:84429252-84429271 None:intergenic 40.0%
AGCGTCTCTTCAATCGTATT+AGG + chr3_2:84429257-84429276 Msa0432210:intron 40.0%
GCGTCTCTTCAATCGTATTA+GGG + chr3_2:84429258-84429277 Msa0432210:intron 40.0%
AGAAATTGGCGAAGAAGATG+AGG + chr3_2:84429359-84429378 Msa0432210:CDS 40.0%
GAAAGGGAAAGAATACCTGA+TGG - chr3_2:84429431-84429450 None:intergenic 40.0%
AACGCGAAGAAAGAGTGAAA+GGG - chr3_2:84429447-84429466 None:intergenic 40.0%
AAACGCGAAGAAAGAGTGAA+AGG - chr3_2:84429448-84429467 None:intergenic 40.0%
! AAGAACTTTTGCGGTGTTTG+AGG + chr3_2:84429701-84429720 Msa0432210:three_prime_UTR 40.0%
TCAAGCGAGTGCAATCAAAA+TGG - chr3_2:84429978-84429997 None:intergenic 40.0%
! CGATTGAAGAGACGCTGATT+TGG - chr3_2:84429253-84429272 None:intergenic 45.0%
ATACGGATCCAGTAAGGGAT+GGG - chr3_2:84429394-84429413 None:intergenic 45.0%
TCCTCATACGGATCCAGTAA+GGG - chr3_2:84429399-84429418 None:intergenic 45.0%
!! TGGTGTTGTCAGTCCTCATA+CGG - chr3_2:84429411-84429430 None:intergenic 45.0%
CTCAAAATCCGAGCTTGGTA+CGG - chr3_2:84429562-84429581 None:intergenic 45.0%
! CGATTGAAGAGACGCTGATT+TGG - chr3_2:84429253-84429272 None:intergenic 45.0%
ATACGGATCCAGTAAGGGAT+GGG - chr3_2:84429394-84429413 None:intergenic 45.0%
TCCTCATACGGATCCAGTAA+GGG - chr3_2:84429399-84429418 None:intergenic 45.0%
!! TGGTGTTGTCAGTCCTCATA+CGG - chr3_2:84429411-84429430 None:intergenic 45.0%
CTCAAAATCCGAGCTTGGTA+CGG - chr3_2:84429562-84429581 None:intergenic 45.0%
! TTTGTGGGCTTTTACGGGCT+CGG - chr3_2:84429114-84429133 None:intergenic 50.0%
! CCATTTTCGATCCTTGCCTC+CGG - chr3_2:84429225-84429244 None:intergenic 50.0%
CGAAGAAGATGAGGCAGAAC+AGG + chr3_2:84429368-84429387 Msa0432210:CDS 50.0%
CATACGGATCCAGTAAGGGA+TGG - chr3_2:84429395-84429414 None:intergenic 50.0%
TCCCTTACTGGATCCGTATG+AGG + chr3_2:84429395-84429414 Msa0432210:CDS 50.0%
GTCCTCATACGGATCCAGTA+AGG - chr3_2:84429400-84429419 None:intergenic 50.0%
TGAGGACTGACAACACCATC+AGG + chr3_2:84429413-84429432 Msa0432210:CDS 50.0%
! CGTACCAAGCTCGGATTTTG+AGG + chr3_2:84429560-84429579 Msa0432210:CDS 50.0%
AGGACCTCAAAATCCGAGCT+TGG - chr3_2:84429567-84429586 None:intergenic 50.0%
! TTTGTGGGCTTTTACGGGCT+CGG - chr3_2:84429114-84429133 None:intergenic 50.0%
! CCATTTTCGATCCTTGCCTC+CGG - chr3_2:84429225-84429244 None:intergenic 50.0%
CGAAGAAGATGAGGCAGAAC+AGG + chr3_2:84429368-84429387 Msa0432210:CDS 50.0%
CATACGGATCCAGTAAGGGA+TGG - chr3_2:84429395-84429414 None:intergenic 50.0%
TCCCTTACTGGATCCGTATG+AGG + chr3_2:84429395-84429414 Msa0432210:CDS 50.0%
GTCCTCATACGGATCCAGTA+AGG - chr3_2:84429400-84429419 None:intergenic 50.0%
TGAGGACTGACAACACCATC+AGG + chr3_2:84429413-84429432 Msa0432210:CDS 50.0%
! CGTACCAAGCTCGGATTTTG+AGG + chr3_2:84429560-84429579 Msa0432210:CDS 50.0%
AGGACCTCAAAATCCGAGCT+TGG - chr3_2:84429567-84429586 None:intergenic 50.0%
TTGCCTCCGGAAATGCTCGA+CGG - chr3_2:84429212-84429231 None:intergenic 55.0%
CCGGAGGCAAGGATCGAAAA+TGG + chr3_2:84429222-84429241 Msa0432210:CDS 55.0%
AGAACAGGCCCATCCCTTAC+TGG + chr3_2:84429383-84429402 Msa0432210:CDS 55.0%
! ACAATGCTAAGCGCCGTCAC+TGG + chr3_2:84429534-84429553 Msa0432210:CDS 55.0%
GGACAAAACGCGGCAAAGCA+AGG - chr3_2:84429587-84429606 None:intergenic 55.0%
TTGCCTCCGGAAATGCTCGA+CGG - chr3_2:84429212-84429231 None:intergenic 55.0%
CCGGAGGCAAGGATCGAAAA+TGG + chr3_2:84429222-84429241 Msa0432210:CDS 55.0%
AGAACAGGCCCATCCCTTAC+TGG + chr3_2:84429383-84429402 Msa0432210:CDS 55.0%
! ACAATGCTAAGCGCCGTCAC+TGG + chr3_2:84429534-84429553 Msa0432210:CDS 55.0%
GGACAAAACGCGGCAAAGCA+AGG - chr3_2:84429587-84429606 None:intergenic 55.0%
GTGCAGCCGTCGAGCATTTC+CGG + chr3_2:84429203-84429222 Msa0432210:intron 60.0%
GTCGAGCATTTCCGGAGGCA+AGG + chr3_2:84429211-84429230 Msa0432210:CDS 60.0%
GTGCAGCCGTCGAGCATTTC+CGG + chr3_2:84429203-84429222 Msa0432210:intron 60.0%
GTCGAGCATTTCCGGAGGCA+AGG + chr3_2:84429211-84429230 Msa0432210:CDS 60.0%
CAGCCGTCGAGCATTTCCGG+AGG + chr3_2:84429206-84429225 Msa0432210:intron 65.0%
GCTTGGTACGGCGCCAGTGA+CGG - chr3_2:84429550-84429569 None:intergenic 65.0%
CACTGGCGCCGTACCAAGCT+CGG + chr3_2:84429551-84429570 Msa0432210:CDS 65.0%
CAGCCGTCGAGCATTTCCGG+AGG + chr3_2:84429206-84429225 Msa0432210:intron 65.0%
GCTTGGTACGGCGCCAGTGA+CGG - chr3_2:84429550-84429569 None:intergenic 65.0%
CACTGGCGCCGTACCAAGCT+CGG + chr3_2:84429551-84429570 Msa0432210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84428954 84430026 84428954 ID=Msa0432210;Name=Msa0432210
chr3_2 mRNA 84428954 84430026 84428954 ID=Msa0432210-mRNA-1;Parent=Msa0432210;Name=Msa0432210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|0.75|0|0.5|4|446|63
chr3_2 exon 84428954 84428957 84428954 ID=Msa0432210-mRNA-1:exon:23848;Parent=Msa0432210-mRNA-1
chr3_2 exon 84429209 84429243 84429209 ID=Msa0432210-mRNA-1:exon:23849;Parent=Msa0432210-mRNA-1
chr3_2 exon 84429331 84429434 84429331 ID=Msa0432210-mRNA-1:exon:23850;Parent=Msa0432210-mRNA-1
chr3_2 exon 84429532 84430026 84429532 ID=Msa0432210-mRNA-1:exon:23851;Parent=Msa0432210-mRNA-1
chr3_2 CDS 84428954 84428957 84428954 ID=Msa0432210-mRNA-1:cds;Parent=Msa0432210-mRNA-1
chr3_2 CDS 84429209 84429243 84429209 ID=Msa0432210-mRNA-1:cds;Parent=Msa0432210-mRNA-1
chr3_2 CDS 84429331 84429434 84429331 ID=Msa0432210-mRNA-1:cds;Parent=Msa0432210-mRNA-1
chr3_2 CDS 84429532 84429580 84429532 ID=Msa0432210-mRNA-1:cds;Parent=Msa0432210-mRNA-1
chr3_2 three_prime_UTR 84429581 84430026 84429581 ID=Msa0432210-mRNA-1:three_prime_utr;Parent=Msa0432210-mRNA-1
Gene Sequence

>Msa0432210

ATGGCCGTCGAGCATTTCCGGAGGCAAGGATCGAAAATGCCGTCACACAAGACATTCGTAATCAAGAAGAAATTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGTATGAGGACTGACAACACCATCAGGTACAATGCTAAGCGCCGTCACTGGCGCCGTACCAAGCTCGGATTTTGA
Protein sequence

>Msa0432210

MAVEHFRRQGSKMPSHKTFVIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*