Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686020 | XP_013456384.2 | 92.237 | 438 | 34 | 0 | 1 | 438 | 1 | 438 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686020 | sp|Q9LN62|RRA3_ARATH | 67.426 | 439 | 130 | 5 | 1 | 437 | 1 | 428 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686020 | A0A072UX35 | 92.009 | 438 | 35 | 0 | 1 | 438 | 1 | 438 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605400 | Msa0686020 | 0.871659 | 5.776251e-67 | -8.615850e-47 |
| Msa0623980 | Msa0686020 | 0.819354 | 1.213646e-52 | -8.615850e-47 |
| Msa0626980 | Msa0686020 | 0.804157 | 2.472256e-49 | -8.615850e-47 |
| Msa0627360 | Msa0686020 | 0.801162 | 1.025577e-48 | -8.615850e-47 |
| Msa0655430 | Msa0686020 | 0.838912 | 2.169710e-57 | -8.615850e-47 |
| Msa0658120 | Msa0686020 | 0.812628 | 3.852081e-51 | -8.615850e-47 |
| Msa0673940 | Msa0686020 | 0.804198 | 2.423161e-49 | -8.615850e-47 |
| Msa0686020 | Msa0702970 | 0.809344 | 1.982200e-50 | -8.615850e-47 |
| Msa0686020 | Msa0751970 | 0.816546 | 5.231028e-52 | -8.615850e-47 |
| Msa0686020 | Msa0761830 | 0.818150 | 2.277679e-52 | -8.615850e-47 |
| Msa0686020 | Msa0847140 | 0.800901 | 1.159438e-48 | -8.615850e-47 |
| Msa0686020 | Msa0852890 | 0.809112 | 2.223123e-50 | -8.615850e-47 |
| Msa0686020 | Msa0869660 | 0.843911 | 1.046983e-58 | -8.615850e-47 |
| Msa0686020 | Msa0900830 | 0.810216 | 1.286972e-50 | -8.615850e-47 |
| Msa0686020 | Msa0965800 | 0.820476 | 6.723541e-53 | -8.615850e-47 |
| Msa0686020 | Msa1041260 | 0.805649 | 1.205540e-49 | -8.615850e-47 |
| Msa0686020 | Msa1055450 | 0.801194 | 1.010252e-48 | -8.615850e-47 |
| Msa0686020 | Msa1165660 | 0.834074 | 3.698455e-56 | -8.615850e-47 |
| Msa0686020 | Msa1179340 | 0.826661 | 2.400164e-54 | -8.615850e-47 |
| Msa0686020 | Msa1186670 | 0.806835 | 6.781948e-50 | -8.615850e-47 |
| Msa0686020 | Msa1187900 | 0.829595 | 4.713396e-55 | -8.615850e-47 |
| Msa0686020 | Msa1233090 | 0.808910 | 2.455671e-50 | -8.615850e-47 |
| Msa0686020 | Msa1275220 | 0.856133 | 3.952390e-62 | -8.615850e-47 |
| Msa0686020 | Msa1313720 | 0.830141 | 3.471117e-55 | -8.615850e-47 |
| Msa0686020 | Msa1366470 | 0.819328 | 1.230558e-52 | -8.615850e-47 |
| Msa0686020 | Msa1395050 | 0.815183 | 1.053381e-51 | -8.615850e-47 |
| Msa0188970 | Msa0686020 | 0.821057 | 4.941762e-53 | -8.615850e-47 |
| Msa0210790 | Msa0686020 | 0.848523 | 5.807169e-60 | -8.615850e-47 |
| Msa0210850 | Msa0686020 | 0.833051 | 6.657895e-56 | -8.615850e-47 |
| Msa0251120 | Msa0686020 | 0.821948 | 3.076987e-53 | -8.615850e-47 |
| Msa0327890 | Msa0686020 | 0.825477 | 4.589417e-54 | -8.615850e-47 |
| Msa0530660 | Msa0686020 | 0.804438 | 2.159985e-49 | -8.615850e-47 |
| Msa0537210 | Msa0686020 | 0.812537 | 4.033676e-51 | -8.615850e-47 |
| Msa0549920 | Msa0686020 | 0.806708 | 7.214006e-50 | -8.615850e-47 |
| Msa0562050 | Msa0686020 | 0.803172 | 3.956453e-49 | -8.615850e-47 |
| Msa0566460 | Msa0686020 | 0.818640 | 1.763826e-52 | -8.615850e-47 |
| Msa0580730 | Msa0686020 | 0.806815 | 6.847029e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686020 | MtrunA17_Chr4g0034621 | 92.009 | 438 | 35 | 0 | 1 | 438 | 1 | 438 | 0.0 | 824 |
| Msa0686020 | MtrunA17_Chr4g0034611 | 84.932 | 438 | 65 | 1 | 1 | 438 | 1 | 437 | 0.0 | 787 |
| Msa0686020 | MtrunA17_Chr4g0034641 | 84.174 | 436 | 64 | 1 | 1 | 436 | 1 | 431 | 0.0 | 763 |
| Msa0686020 | MtrunA17_Chr4g0034631 | 85.092 | 436 | 58 | 1 | 1 | 436 | 1 | 429 | 0.0 | 762 |
| Msa0686020 | MtrunA17_Chr4g0034661 | 83.028 | 436 | 58 | 2 | 1 | 436 | 1 | 420 | 0.0 | 730 |
| Msa0686020 | MtrunA17_Chr4g0034651 | 80.505 | 436 | 76 | 1 | 1 | 436 | 34 | 460 | 0.0 | 708 |
| Msa0686020 | MtrunA17_Chr1g0154701 | 68.837 | 430 | 127 | 3 | 7 | 436 | 5 | 427 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686020 | AT1G19360.1 | 67.426 | 439 | 130 | 5 | 1 | 437 | 1 | 428 | 0.0 | 603 |
| Msa0686020 | AT1G19360.2 | 67.426 | 439 | 130 | 5 | 1 | 437 | 1 | 428 | 0.0 | 603 |
| Msa0686020 | AT1G75110.1 | 67.381 | 420 | 136 | 1 | 17 | 436 | 9 | 427 | 0.0 | 598 |
| Msa0686020 | AT1G75120.1 | 61.985 | 413 | 131 | 4 | 24 | 436 | 16 | 402 | 0.0 | 525 |
Find 93 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCTTCAATTGAGCTTT+TGG | 0.172013 | 4_4:-50341067 | Msa0686020:CDS |
| AGGATATGGGTTTACAATTC+TGG | 0.249487 | 4_4:-50341111 | Msa0686020:CDS |
| TTCATTCGCCGAAGCTTATC+AGG | 0.266822 | 4_4:+50340823 | None:intergenic |
| CACAATAACATGACAGCTTA+TGG | 0.281097 | 4_4:-50341192 | Msa0686020:CDS |
| GGAGGGAGAGCAGCTGTCTC+TGG | 0.299812 | 4_4:-50341351 | Msa0686020:CDS |
| GTAATCATTGGAGTTCTTAC+TGG | 0.301834 | 4_4:-50345075 | Msa0686020:CDS |
| TAGTTCATACCACGAGGATA+TGG | 0.304296 | 4_4:-50341125 | Msa0686020:CDS |
| AAGGCAACAACTAGATAATT+AGG | 0.329864 | 4_4:+50341465 | None:intergenic |
| TCATGCTTCTAAAAGAACTA+TGG | 0.336021 | 4_4:-50340947 | Msa0686020:CDS |
| AGCATGAAGCCCGTCATAAC+CGG | 0.354815 | 4_4:+50340963 | None:intergenic |
| GCTTCTTGCATTAGGTAAAC+AGG | 0.362356 | 4_4:-50341685 | Msa0686020:CDS |
| TCTAATATATTTGCCAATCT+CGG | 0.386117 | 4_4:+50341588 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4_4:+50340850 | None:intergenic |
| TGAGAAACAAAGAATTCATT+AGG | 0.391068 | 4_4:+50345030 | None:intergenic |
| GTTGTTGATTATTATGTCAA+TGG | 0.405758 | 4_4:-50340796 | Msa0686020:CDS |
| TATACCGACTCTCTTGATAT+TGG | 0.413611 | 4_4:+50341488 | None:intergenic |
| GGTTACCACTTTGAGCCATC+AGG | 0.421929 | 4_4:+50340748 | None:intergenic |
| CTAATATATTTGCCAATCTC+GGG | 0.422456 | 4_4:+50341589 | None:intergenic |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4_4:-50341238 | Msa0686020:CDS |
| CCTTGCAAACTCCAATGTTA+AGG | 0.426563 | 4_4:-50341532 | Msa0686020:CDS |
| ATCATTGCCGCTGTAATCAT+TGG | 0.429648 | 4_4:-50345087 | Msa0686020:CDS |
| AATCGTCACCTACCTATTGC+TGG | 0.431274 | 4_4:-50344994 | Msa0686020:CDS |
| TTGGTCCCATGCTTTCTCCT+TGG | 0.439083 | 4_4:+50341023 | None:intergenic |
| TGAGTCTTGGGTCCAGCAAT+AGG | 0.439605 | 4_4:+50344982 | None:intergenic |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4_4:-50341808 | Msa0686020:CDS |
| CTCAATCTCTACTGATATCA+AGG | 0.441387 | 4_4:-50345110 | Msa0686020:CDS |
| TTGTTGATTATTATGTCAAT+GGG | 0.453648 | 4_4:-50340795 | Msa0686020:CDS |
| CTCGGGTTCACGGATTCATC+AGG | 0.461693 | 4_4:+50341606 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4_4:+50341072 | None:intergenic |
| ACAGTATCAATACCATCATC+CGG | 0.475603 | 4_4:+50341384 | None:intergenic |
| AGTTCATACCACGAGGATAT+GGG | 0.478586 | 4_4:-50341124 | Msa0686020:CDS |
| TGAATCCGTGAACCCGAGAT+TGG | 0.481653 | 4_4:-50341601 | Msa0686020:CDS |
| AATAGGTAGGTGACGATTTG+AGG | 0.481988 | 4_4:+50344999 | None:intergenic |
| TTAAGGAGACCCTCGAGGTC+TGG | 0.486077 | 4_4:-50341515 | Msa0686020:CDS |
| ATCAGGAGCAACAGTAGGAT+TGG | 0.486219 | 4_4:+50341623 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.491186 | 4_4:+50341068 | None:intergenic |
| GGAAAGGTTTGAGAGCATCT+TGG | 0.491288 | 4_4:+50340770 | None:intergenic |
| CCGTCCCATCCCGGTTATGA+CGG | 0.491722 | 4_4:-50340973 | Msa0686020:CDS |
| TACAAAAGAGACCCGGATGA+TGG | 0.496519 | 4_4:-50341396 | Msa0686020:CDS |
| TAACCTCAGTAAATTAAAAC+CGG | 0.496942 | 4_4:-50340869 | Msa0686020:CDS |
| TATCTATGACGAACCTGTGA+TGG | 0.498138 | 4_4:-50341160 | Msa0686020:CDS |
| GAAAATGAAACCTGAGTCTT+GGG | 0.499818 | 4_4:+50344970 | None:intergenic |
| CTTGATATCAGTAGAGATTG+AGG | 0.500376 | 4_4:+50345111 | None:intergenic |
| CACTTTGAGCCATCAGGGAA+AGG | 0.502373 | 4_4:+50340754 | None:intergenic |
| CGATCCAAAAGCTCAATTGA+AGG | 0.505035 | 4_4:+50341063 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4_4:+50341243 | None:intergenic |
| ATTTGCCAATCTCGGGTTCA+CGG | 0.510225 | 4_4:+50341596 | None:intergenic |
| GTTCTTCATTGAAAACAGCT+TGG | 0.514126 | 4_4:+50341004 | None:intergenic |
| CTTTGAAATTTCCTCGTCGA+AGG | 0.515983 | 4_4:+50341446 | None:intergenic |
| CCTTAACATTGGAGTTTGCA+AGG | 0.516596 | 4_4:+50341532 | None:intergenic |
| GAGGGAGAGCAGCTGTCTCT+GGG | 0.517475 | 4_4:-50341350 | Msa0686020:CDS |
| AGGCTTCAGCTTGCAGAGCA+AGG | 0.524017 | 4_4:-50341729 | Msa0686020:CDS |
| CGTCCCATCCCGGTTATGAC+GGG | 0.525047 | 4_4:-50340972 | Msa0686020:CDS |
| GGCTTTCCAAGGAGAAAGCA+TGG | 0.525521 | 4_4:-50341029 | Msa0686020:CDS |
| TGAGGGTTGTTCTTCATCAA+AGG | 0.532197 | 4_4:+50345129 | None:intergenic |
| TTGATATCAGTAGAGATTGA+GGG | 0.536003 | 4_4:+50345112 | None:intergenic |
| ATTACCATCCTGATAAGCTT+CGG | 0.537140 | 4_4:-50340831 | Msa0686020:CDS |
| TGAAAATGAAACCTGAGTCT+TGG | 0.544330 | 4_4:+50344969 | None:intergenic |
| AAGCCCGTCATAACCGGGAT+GGG | 0.548733 | 4_4:+50340969 | None:intergenic |
| CTTAACATTGGAGTTTGCAA+GGG | 0.559512 | 4_4:+50341533 | None:intergenic |
| GCTCTCAAACCTTTCCCTGA+TGG | 0.559523 | 4_4:-50340763 | Msa0686020:CDS |
| GTTACCACTTTGAGCCATCA+GGG | 0.562119 | 4_4:+50340749 | None:intergenic |
| CTCGAGGGTCTCCTTAACAT+TGG | 0.565730 | 4_4:+50341521 | None:intergenic |
| GTTATTGTGACCATCACTCA+TGG | 0.567499 | 4_4:+50341206 | None:intergenic |
| AATGCTTTGACAGTACCAAA+AGG | 0.570284 | 4_4:+50341651 | None:intergenic |
| GCATGAAGCCCGTCATAACC+GGG | 0.579502 | 4_4:+50340964 | None:intergenic |
| CCGTCATAACCGGGATGGGA+CGG | 0.584602 | 4_4:+50340973 | None:intergenic |
| GAAGCCCGTCATAACCGGGA+TGG | 0.590516 | 4_4:+50340968 | None:intergenic |
| TATTGCTGGACCCAAGACTC+AGG | 0.596949 | 4_4:-50344980 | Msa0686020:intron |
| AGGTGAGTGAGTTGACAGAA+AGG | 0.599718 | 4_4:-50341749 | Msa0686020:CDS |
| AATCGAGACCAACCCATCAC+AGG | 0.602173 | 4_4:+50341147 | None:intergenic |
| TGTCGCGACAAGGCTTTCCA+AGG | 0.604324 | 4_4:-50341040 | Msa0686020:CDS |
| TGCAGAGCAAGGAAAAGACC+AGG | 0.607035 | 4_4:-50341718 | Msa0686020:CDS |
| ATGACGAACCTGTGATGGGT+TGG | 0.611315 | 4_4:-50341155 | Msa0686020:CDS |
| TTCGCCGAAGCTTATCAGGA+TGG | 0.615270 | 4_4:+50340827 | None:intergenic |
| CAGTATCAATACCATCATCC+GGG | 0.624695 | 4_4:+50341385 | None:intergenic |
| TCTTGGGTCCAGCAATAGGT+AGG | 0.625086 | 4_4:+50344986 | None:intergenic |
| GATTCATCAGGAGCAACAGT+AGG | 0.626788 | 4_4:+50341618 | None:intergenic |
| TTCACCAATATCAAGAGAGT+CGG | 0.631376 | 4_4:-50341492 | Msa0686020:CDS |
| TGGACTCAACATCCGAATCA+CGG | 0.631798 | 4_4:+50341226 | None:intergenic |
| ATTGAGCGCAGAGAAAGAGA+AGG | 0.634348 | 4_4:-50345153 | Msa0686020:CDS |
| ATCTATGACGAACCTGTGAT+GGG | 0.642865 | 4_4:-50341159 | Msa0686020:CDS |
| GATGATGGTATTGATACTGT+TGG | 0.643432 | 4_4:-50341381 | Msa0686020:CDS |
| GCTTTCCAAGGAGAAAGCAT+GGG | 0.644753 | 4_4:-50341028 | Msa0686020:CDS |
| CTTTCCCTGATGGCTCAAAG+TGG | 0.648347 | 4_4:-50340753 | Msa0686020:CDS |
| TATTGGTGAACCAGACCTCG+AGG | 0.661264 | 4_4:+50341505 | None:intergenic |
| GATGTTGAGTCCATGAGTGA+TGG | 0.662271 | 4_4:-50341216 | Msa0686020:CDS |
| CTCGATTAGTTCATACCACG+AGG | 0.662449 | 4_4:-50341131 | Msa0686020:CDS |
| ATTGGTGAACCAGACCTCGA+GGG | 0.670776 | 4_4:+50341506 | None:intergenic |
| TCTAGTTGTTGCCTTCGACG+AGG | 0.686292 | 4_4:-50341457 | Msa0686020:CDS |
| AAGAACTCCAATGATTACAG+CGG | 0.714568 | 4_4:+50345080 | None:intergenic |
| CAATGTTAAGGAGACCCTCG+AGG | 0.715442 | 4_4:-50341520 | Msa0686020:CDS |
| ATTGTAAACCCATATCCTCG+TGG | 0.729649 | 4_4:+50341116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTATTATTATAA+CGG | + | chr4_4:50342729-50342748 | None:intergenic | 0.0% |
| !! | TTAAATAATATTATAAAAAA+TGG | + | chr4_4:50343187-50343206 | None:intergenic | 0.0% |
| !!! | TTTTTTTATTTTATTTTATT+TGG | - | chr4_4:50344033-50344052 | Msa0686020:intron | 0.0% |
| !!! | TTTTTTATTTTATTTTATTT+GGG | - | chr4_4:50344034-50344053 | Msa0686020:intron | 0.0% |
| !! | TTTAAGCATATTTAATTAAT+TGG | - | chr4_4:50341203-50341222 | Msa0686020:CDS | 10.0% |
| !!! | TTGATTTTAATTAAAATTGT+AGG | - | chr4_4:50341517-50341536 | Msa0686020:CDS | 10.0% |
| !!! | TAAAGATATTATATGATTTT+TGG | + | chr4_4:50341698-50341717 | None:intergenic | 10.0% |
| !! | TTGTTAATATAAAATTCAAA+TGG | + | chr4_4:50342337-50342356 | None:intergenic | 10.0% |
| !!! | GTATTTTAATTAAAGTAAAA+GGG | + | chr4_4:50342594-50342613 | None:intergenic | 10.0% |
| !!! | AGTATTTTAATTAAAGTAAA+AGG | + | chr4_4:50342595-50342614 | None:intergenic | 10.0% |
| !!! | AGTTTTTATATAAAGTAAAA+GGG | + | chr4_4:50342628-50342647 | None:intergenic | 10.0% |
| !!! | CTTATTTTAAAATAAAGTAA+AGG | + | chr4_4:50342699-50342718 | None:intergenic | 10.0% |
| !!! | CATTAAATAATTGATTTATA+TGG | - | chr4_4:50342913-50342932 | Msa0686020:intron | 10.0% |
| !!! | TTATTTCTTATAAATAGTAT+CGG | - | chr4_4:50342987-50343006 | Msa0686020:intron | 10.0% |
| !! | TTGTATATAAAAAGATATAT+CGG | + | chr4_4:50343034-50343053 | None:intergenic | 10.0% |
| !! | CATATAATTCAATAAAAAAG+TGG | + | chr4_4:50341334-50341353 | None:intergenic | 15.0% |
| !!! | TTTAAAAACTCAAGTTTTTA+CGG | - | chr4_4:50342465-50342484 | Msa0686020:intron | 15.0% |
| !! | CATGTAATAATTATATCATT+TGG | + | chr4_4:50342537-50342556 | None:intergenic | 15.0% |
| !!! | GAGTTTTTATATAAAGTAAA+AGG | + | chr4_4:50342629-50342648 | None:intergenic | 15.0% |
| !!! | TAGTTTAAAACCATTAATAT+AGG | - | chr4_4:50342762-50342781 | Msa0686020:intron | 15.0% |
| !! | ATGAGTTGTTTATTATAAAT+AGG | + | chr4_4:50342883-50342902 | None:intergenic | 15.0% |
| !! | TATTATAAAAAATGGCAAAA+TGG | + | chr4_4:50343179-50343198 | None:intergenic | 15.0% |
| !! | ATAGGTAATTTATCTATAAT+TGG | + | chr4_4:50343684-50343703 | None:intergenic | 15.0% |
| !!! | ATGATATTTTAATTGGAAAA+GGG | - | chr4_4:50343731-50343750 | Msa0686020:intron | 15.0% |
| !! | TTGGAAAATAAATTGTAATA+AGG | - | chr4_4:50343767-50343786 | Msa0686020:intron | 15.0% |
| !!! | AACTATACTTATCTTTTTCA+AGG | - | chr4_4:50341558-50341577 | Msa0686020:CDS | 20.0% |
| !!! | TATTATATTTGCTATATCGT+TGG | + | chr4_4:50341587-50341606 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTAAGGATATAAT+CGG | - | chr4_4:50341657-50341676 | Msa0686020:CDS | 20.0% |
| !!! | TTCATATTTTTACTCATTCA+CGG | - | chr4_4:50342283-50342302 | Msa0686020:intron | 20.0% |
| !!! | ATATTCCGTCTTTTAAAATA+TGG | + | chr4_4:50342371-50342390 | None:intergenic | 20.0% |
| !! | CATGTGATAATTAATTCATT+TGG | + | chr4_4:50342417-50342436 | None:intergenic | 20.0% |
| !! | TTGTTTATTATAAATAGGAC+CGG | + | chr4_4:50342878-50342897 | None:intergenic | 20.0% |
| !! | CATTAAATAATTGATGTATC+TGG | + | chr4_4:50342952-50342971 | None:intergenic | 20.0% |
| !!! | ATAAAAAGATATATCGGTTT+TGG | + | chr4_4:50343028-50343047 | None:intergenic | 20.0% |
| !! | CACAAAAATAGGAATAAAAT+TGG | - | chr4_4:50343276-50343295 | Msa0686020:intron | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | + | chr4_4:50343381-50343400 | None:intergenic | 20.0% |
| !! | AAATTTAGTGCAACATATAA+AGG | - | chr4_4:50343705-50343724 | Msa0686020:intron | 20.0% |
| !! | AATTTAGTGCAACATATAAA+GGG | - | chr4_4:50343706-50343725 | Msa0686020:intron | 20.0% |
| !!! | GATGATATTTTAATTGGAAA+AGG | - | chr4_4:50343730-50343749 | Msa0686020:intron | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | - | chr4_4:50343748-50343767 | Msa0686020:intron | 20.0% |
| !!! | TTATTTTATTTTATTTGGGC+AGG | - | chr4_4:50344038-50344057 | Msa0686020:intron | 20.0% |
| !!! | TTGTTGATTATTATGTCAAT+GGG | - | chr4_4:50345111-50345130 | Msa0686020:CDS | 20.0% |
| ! | TGAGAAACAAAGAATTCATT+AGG | + | chr4_4:50340879-50340898 | None:intergenic | 25.0% |
| ! | CAAGAAAGATAGTAAATCTT+TGG | + | chr4_4:50340963-50340982 | None:intergenic | 25.0% |
| !! | TTTTACTTTACTACATGATG+TGG | - | chr4_4:50341129-50341148 | Msa0686020:CDS | 25.0% |
| ! | TTTACTTTACTACATGATGT+GGG | - | chr4_4:50341130-50341149 | Msa0686020:CDS | 25.0% |
| ! | TTGGATAATCCAAATTCTAT+TGG | - | chr4_4:50341222-50341241 | Msa0686020:CDS | 25.0% |
| ! | TGGATAATCCAAATTCTATT+GGG | - | chr4_4:50341223-50341242 | Msa0686020:CDS | 25.0% |
| !!! | GAAAGTTGGTAATACTATTA+TGG | + | chr4_4:50341292-50341311 | None:intergenic | 25.0% |
| ! | TCAATAAAAAAGTGGACAAA+CGG | + | chr4_4:50341326-50341345 | None:intergenic | 25.0% |
| !!! | AATGGATTACTATGAGAAAT+GGG | + | chr4_4:50342319-50342338 | None:intergenic | 25.0% |
| !!! | AAATGGATTACTATGAGAAA+TGG | + | chr4_4:50342320-50342339 | None:intergenic | 25.0% |
| !!! | ATGTGCCATATTTTAAAAGA+CGG | - | chr4_4:50342363-50342382 | Msa0686020:intron | 25.0% |
| !!! | ATATACTGTTTCTATTGTAG+TGG | + | chr4_4:50342795-50342814 | None:intergenic | 25.0% |
| !! | TTCTTATAAATAGTATCGGA+AGG | - | chr4_4:50342991-50343010 | Msa0686020:intron | 25.0% |
| ! | GCAGTAGAAAATCAAATAAA+CGG | - | chr4_4:50343060-50343079 | Msa0686020:intron | 25.0% |
| ! | TTGACGGTTCATATATTAAT+GGG | + | chr4_4:50343236-50343255 | None:intergenic | 25.0% |
| ! | AATGAACAATGCACAAAAAT+AGG | - | chr4_4:50343265-50343284 | Msa0686020:intron | 25.0% |
| ! | GGGTAAAATTGAAAGAAAAA+TGG | + | chr4_4:50343361-50343380 | None:intergenic | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | + | chr4_4:50343382-50343401 | None:intergenic | 25.0% |
| ! | TTAAGACATGCACATTAAAA+TGG | + | chr4_4:50343403-50343422 | None:intergenic | 25.0% |
| ! | GGTAATTTATCTATAATTGG+TGG | + | chr4_4:50343681-50343700 | None:intergenic | 25.0% |
| ! | TATGTTGCACTAAATTTGAT+AGG | + | chr4_4:50343702-50343721 | None:intergenic | 25.0% |
| !!! | AAGGGAGATGATATTTTAAT+TGG | - | chr4_4:50343724-50343743 | Msa0686020:intron | 25.0% |
| !! | AGTTTGAAGTTAGAGAATTT+CGG | + | chr4_4:50343817-50343836 | None:intergenic | 25.0% |
| !!! | ATCTTGATAATGATGAAGAA+AGG | + | chr4_4:50343855-50343874 | None:intergenic | 25.0% |
| ! | CATGTTAAAATCAGAATTTG+TGG | - | chr4_4:50344098-50344117 | Msa0686020:intron | 25.0% |
| ! | TCTAATATATTTGCCAATCT+CGG | + | chr4_4:50344321-50344340 | None:intergenic | 25.0% |
| ! | ATTGATACTGTTGGAAAAAA+AGG | - | chr4_4:50344534-50344553 | Msa0686020:intron | 25.0% |
| ! | TAACCTCAGTAAATTAAAAC+CGG | - | chr4_4:50345037-50345056 | Msa0686020:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | + | chr4_4:50345059-50345078 | None:intergenic | 25.0% |
| !! | GTTGTTGATTATTATGTCAA+TGG | - | chr4_4:50345110-50345129 | Msa0686020:CDS | 25.0% |
| TTGATATCAGTAGAGATTGA+GGG | + | chr4_4:50340797-50340816 | None:intergenic | 30.0% | |
| ATGATTCACCCAATAGAATT+TGG | + | chr4_4:50341234-50341253 | None:intergenic | 30.0% | |
| TCAACAAATAGCATTCGTAT+AGG | - | chr4_4:50341632-50341651 | Msa0686020:CDS | 30.0% | |
| TTGTTGTACTTGCAAAAGTA+CGG | - | chr4_4:50341725-50341744 | Msa0686020:CDS | 30.0% | |
| AAAGTACGGTAATAGAATCT+AGG | - | chr4_4:50341739-50341758 | Msa0686020:CDS | 30.0% | |
| GATTTAGACTGTTTATCTGA+TGG | - | chr4_4:50341761-50341780 | Msa0686020:CDS | 30.0% | |
| TTACTTAGGCAGTAAGTAAT+AGG | - | chr4_4:50341839-50341858 | Msa0686020:CDS | 30.0% | |
| TACTTAGGCAGTAAGTAATA+GGG | - | chr4_4:50341840-50341859 | Msa0686020:CDS | 30.0% | |
| CAGTTGTTTAAGGATATGAT+CGG | - | chr4_4:50342028-50342047 | Msa0686020:intron | 30.0% | |
| TGATCGGAAGTAAAAAAACT+CGG | - | chr4_4:50342044-50342063 | Msa0686020:intron | 30.0% | |
| AACAAGCTAACTCAATTGTT+TGG | + | chr4_4:50342127-50342146 | None:intergenic | 30.0% | |
| ! | TTTTTACTCATTCACGGAAT+TGG | - | chr4_4:50342289-50342308 | Msa0686020:intron | 30.0% |
| ! | GGGGTATGATAAAATCTTTT+TGG | + | chr4_4:50342853-50342872 | None:intergenic | 30.0% |
| TTATTATAAATAGGACCGGA+GGG | + | chr4_4:50342874-50342893 | None:intergenic | 30.0% | |
| TTTATTATAAATAGGACCGG+AGG | + | chr4_4:50342875-50342894 | None:intergenic | 30.0% | |
| CAAGTTAATGTTCATCCTTA+CGG | - | chr4_4:50343085-50343104 | Msa0686020:intron | 30.0% | |
| !! | TTACGGTAGTAGCTTTAAAT+GGG | - | chr4_4:50343102-50343121 | Msa0686020:intron | 30.0% |
| TGGCAAAATGGTTTAAATGA+AGG | + | chr4_4:50343167-50343186 | None:intergenic | 30.0% | |
| TGACGGTTCATATATTAATG+GGG | + | chr4_4:50343235-50343254 | None:intergenic | 30.0% | |
| GTTGACGGTTCATATATTAA+TGG | + | chr4_4:50343237-50343256 | None:intergenic | 30.0% | |
| ! | GTTCATTTCATTGTTGTTGA+CGG | + | chr4_4:50343252-50343271 | None:intergenic | 30.0% |
| AATGCCAGTAGTATATTGTA+AGG | - | chr4_4:50343421-50343440 | Msa0686020:intron | 30.0% | |
| ATGCCAGTAGTATATTGTAA+GGG | - | chr4_4:50343422-50343441 | Msa0686020:intron | 30.0% | |
| CAATGTTGTTCTTATTGTTG+CGG | + | chr4_4:50343521-50343540 | None:intergenic | 30.0% | |
| ATCTATAATTGGTGGAAAGA+TGG | + | chr4_4:50343673-50343692 | None:intergenic | 30.0% | |
| CATTATCAAGATTATGTGAG+AGG | - | chr4_4:50343863-50343882 | Msa0686020:intron | 30.0% | |
| !!! | AACTCTGATTTTCGAGTTAT+GGG | + | chr4_4:50343956-50343975 | None:intergenic | 30.0% |
| TCGAAAATCAGAGTTCTTAT+AGG | - | chr4_4:50343961-50343980 | Msa0686020:intron | 30.0% | |
| AAGTCATTGGGAAAAAAGAA+AGG | + | chr4_4:50343997-50344016 | None:intergenic | 30.0% | |
| TGAGAAACAAAGAAGTCATT+GGG | + | chr4_4:50344009-50344028 | None:intergenic | 30.0% | |
| TTGAGAAACAAAGAAGTCAT+TGG | + | chr4_4:50344010-50344029 | None:intergenic | 30.0% | |
| AAATGAACAGCTGAAAAAAC+AGG | - | chr4_4:50344137-50344156 | Msa0686020:intron | 30.0% | |
| GAAAAAATGCTTCTTGCATT+AGG | - | chr4_4:50344213-50344232 | Msa0686020:intron | 30.0% | |
| CTAATATATTTGCCAATCTC+GGG | + | chr4_4:50344320-50344339 | None:intergenic | 30.0% | |
| AAGGCAACAACTAGATAATT+AGG | + | chr4_4:50344444-50344463 | None:intergenic | 30.0% | |
| ATACTGTTGGAAAAAAAGGA+GGG | - | chr4_4:50344538-50344557 | Msa0686020:intron | 30.0% | |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | - | chr4_4:50344593-50344612 | Msa0686020:intron | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | - | chr4_4:50344594-50344613 | Msa0686020:intron | 30.0% |
| ! | TCATGCTTCTAAAAGAACTA+TGG | - | chr4_4:50344959-50344978 | Msa0686020:intron | 30.0% |
| !! | AAGTTCTTTTCAAGACAGTA+AGG | - | chr4_4:50345006-50345025 | Msa0686020:CDS | 30.0% |
| !!! | TTACCGGTTTTAATTTACTG+AGG | + | chr4_4:50345043-50345062 | None:intergenic | 30.0% |
| CTTGATATCAGTAGAGATTG+AGG | + | chr4_4:50340798-50340817 | None:intergenic | 35.0% | |
| CTCAATCTCTACTGATATCA+AGG | - | chr4_4:50340796-50340815 | Msa0686020:CDS | 35.0% | |
| AAGAACTCCAATGATTACAG+CGG | + | chr4_4:50340829-50340848 | None:intergenic | 35.0% | |
| GTAATCATTGGAGTTCTTAC+TGG | - | chr4_4:50340831-50340850 | Msa0686020:CDS | 35.0% | |
| GAAAATGAAACCTGAGTCTT+GGG | + | chr4_4:50340939-50340958 | None:intergenic | 35.0% | |
| TGAAAATGAAACCTGAGTCT+TGG | + | chr4_4:50340940-50340959 | None:intergenic | 35.0% | |
| ! | CGTATAGGCAAGTTTGTTTA+AGG | - | chr4_4:50341647-50341666 | Msa0686020:CDS | 35.0% |
| ACTTAGGCAGTAAGTAATAG+GGG | - | chr4_4:50341841-50341860 | Msa0686020:CDS | 35.0% | |
| !!! | AGTAAGTAATAGGGGTGTTT+TGG | - | chr4_4:50341849-50341868 | Msa0686020:CDS | 35.0% |
| !!! | GTAAGTAATAGGGGTGTTTT+GGG | - | chr4_4:50341850-50341869 | Msa0686020:intron | 35.0% |
| ! | TTCCTAAAAGACCTCTGAAA+GGG | + | chr4_4:50341995-50342014 | None:intergenic | 35.0% |
| ATTCCTAAAAGACCTCTGAA+AGG | + | chr4_4:50341996-50342015 | None:intergenic | 35.0% | |
| ATTGACAGTCCAGTTGTTTA+AGG | - | chr4_4:50342018-50342037 | Msa0686020:intron | 35.0% | |
| CGATCATATCCTTAAACAAC+TGG | + | chr4_4:50342030-50342049 | None:intergenic | 35.0% | |
| ! | CACCAAATGACGAATCTTTT+GGG | - | chr4_4:50342156-50342175 | Msa0686020:intron | 35.0% |
| !!! | GAATCTTTTGGGACAAACTT+TGG | - | chr4_4:50342167-50342186 | Msa0686020:intron | 35.0% |
| TGGTGCTCTTCCTATATTAA+TGG | + | chr4_4:50342775-50342794 | None:intergenic | 35.0% | |
| TATTATAAATAGGACCGGAG+GGG | + | chr4_4:50342873-50342892 | None:intergenic | 35.0% | |
| ! | CATTTAAAGCTACTACCGTA+AGG | + | chr4_4:50343103-50343122 | None:intergenic | 35.0% |
| !! | CTTACGGTAGTAGCTTTAAA+TGG | - | chr4_4:50343101-50343120 | Msa0686020:intron | 35.0% |
| ACACAAAATTCTGCCCAAAA+GGG | + | chr4_4:50343133-50343152 | None:intergenic | 35.0% | |
| AACACAAAATTCTGCCCAAA+AGG | + | chr4_4:50343134-50343153 | None:intergenic | 35.0% | |
| TGCCAGTAGTATATTGTAAG+GGG | - | chr4_4:50343423-50343442 | Msa0686020:intron | 35.0% | |
| !! | GCGGATTGTTTCTATTTCAA+TGG | + | chr4_4:50343502-50343521 | None:intergenic | 35.0% |
| CGCAACAATAAGAACAACAT+TGG | - | chr4_4:50343519-50343538 | Msa0686020:intron | 35.0% | |
| TAACTCGATCAAAGTCGTAA+TGG | - | chr4_4:50343890-50343909 | Msa0686020:intron | 35.0% | |
| !!! | GTTATGGGGTTTTGAAGATT+TGG | + | chr4_4:50343941-50343960 | None:intergenic | 35.0% |
| !!! | ACTCTGATTTTCGAGTTATG+GGG | + | chr4_4:50343955-50343974 | None:intergenic | 35.0% |
| !!! | GAACTCTGATTTTCGAGTTA+TGG | + | chr4_4:50343957-50343976 | None:intergenic | 35.0% |
| TTAGGTAAACAGGAAAAAGC+TGG | - | chr4_4:50344231-50344250 | Msa0686020:intron | 35.0% | |
| AATGCTTTGACAGTACCAAA+AGG | + | chr4_4:50344258-50344277 | None:intergenic | 35.0% | |
| CTTAACATTGGAGTTTGCAA+GGG | + | chr4_4:50344376-50344395 | None:intergenic | 35.0% | |
| TTCACCAATATCAAGAGAGT+CGG | - | chr4_4:50344414-50344433 | Msa0686020:intron | 35.0% | |
| !! | TATACCGACTCTCTTGATAT+TGG | + | chr4_4:50344421-50344440 | None:intergenic | 35.0% |
| ACAGTATCAATACCATCATC+CGG | + | chr4_4:50344525-50344544 | None:intergenic | 35.0% | |
| !! | GATGATGGTATTGATACTGT+TGG | - | chr4_4:50344525-50344544 | Msa0686020:intron | 35.0% |
| GATACTGTTGGAAAAAAAGG+AGG | - | chr4_4:50344537-50344556 | Msa0686020:intron | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | + | chr4_4:50344666-50344685 | None:intergenic | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | - | chr4_4:50344668-50344687 | Msa0686020:intron | 35.0% | |
| CACAATAACATGACAGCTTA+TGG | - | chr4_4:50344714-50344733 | Msa0686020:intron | 35.0% | |
| AGGATATGGGTTTACAATTC+TGG | - | chr4_4:50344795-50344814 | Msa0686020:intron | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | + | chr4_4:50344841-50344860 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | - | chr4_4:50344839-50344858 | Msa0686020:intron | 35.0% |
| GTTCTTCATTGAAAACAGCT+TGG | + | chr4_4:50344905-50344924 | None:intergenic | 35.0% | |
| ATTACCATCCTGATAAGCTT+CGG | - | chr4_4:50345075-50345094 | Msa0686020:CDS | 35.0% | |
| TGAGGGTTGTTCTTCATCAA+AGG | + | chr4_4:50340780-50340799 | None:intergenic | 40.0% | |
| ATCATTGCCGCTGTAATCAT+TGG | - | chr4_4:50340819-50340838 | Msa0686020:CDS | 40.0% | |
| AATAGGTAGGTGACGATTTG+AGG | + | chr4_4:50340910-50340929 | None:intergenic | 40.0% | |
| AAAAAGTGGACAAACGGACA+CGG | + | chr4_4:50341320-50341339 | None:intergenic | 40.0% | |
| GTTTATCTGATGGCTTGAGA+AGG | - | chr4_4:50341771-50341790 | Msa0686020:CDS | 40.0% | |
| ! | AGCCTGATTTGTCGTTACTT+AGG | - | chr4_4:50341825-50341844 | Msa0686020:CDS | 40.0% |
| TGCCTAAGTAACGACAAATC+AGG | + | chr4_4:50341830-50341849 | None:intergenic | 40.0% | |
| !!! | TAGGGGTGTTTTGGGTATTT+AGG | - | chr4_4:50341858-50341877 | Msa0686020:intron | 40.0% |
| CCAAAAGATTCGTCATTTGG+TGG | + | chr4_4:50342158-50342177 | None:intergenic | 40.0% | |
| ! | CCACCAAATGACGAATCTTT+TGG | - | chr4_4:50342155-50342174 | Msa0686020:intron | 40.0% |
| GTCCCAAAAGATTCGTCATT+TGG | + | chr4_4:50342161-50342180 | None:intergenic | 40.0% | |
| GTGTTAAGACTTCGACTTTC+AGG | + | chr4_4:50342212-50342231 | None:intergenic | 40.0% | |
| ! | AGATTTTATCATACCCCCTC+CGG | - | chr4_4:50342856-50342875 | Msa0686020:intron | 40.0% |
| ATTATAAATAGGACCGGAGG+GGG | + | chr4_4:50342872-50342891 | None:intergenic | 40.0% | |
| ! | TTAAATGGGACACACCCTTT+TGG | - | chr4_4:50343116-50343135 | Msa0686020:intron | 40.0% |
| ! | TAAATGGGACACACCCTTTT+GGG | - | chr4_4:50343117-50343136 | Msa0686020:intron | 40.0% |
| GCCAGTAGTATATTGTAAGG+GGG | - | chr4_4:50343424-50343443 | Msa0686020:intron | 40.0% | |
| ACCCCCTTACAATATACTAC+TGG | + | chr4_4:50343428-50343447 | None:intergenic | 40.0% | |
| !!! | CAAGAAGCATTTTTTCTGCC+TGG | + | chr4_4:50344209-50344228 | None:intergenic | 40.0% |
| GCTTCTTGCATTAGGTAAAC+AGG | - | chr4_4:50344221-50344240 | Msa0686020:intron | 40.0% | |
| CCTTAACATTGGAGTTTGCA+AGG | + | chr4_4:50344377-50344396 | None:intergenic | 40.0% | |
| CCTTGCAAACTCCAATGTTA+AGG | - | chr4_4:50344374-50344393 | Msa0686020:intron | 40.0% | |
| !! | CTTTGAAATTTCCTCGTCGA+AGG | + | chr4_4:50344463-50344482 | None:intergenic | 40.0% |
| ! | CCGGGTCTCTTTTGTAAAAT+GGG | + | chr4_4:50344506-50344525 | None:intergenic | 40.0% |
| ! | CCCATTTTACAAAAGAGACC+CGG | - | chr4_4:50344503-50344522 | Msa0686020:intron | 40.0% |
| ! | TCCGGGTCTCTTTTGTAAAA+TGG | + | chr4_4:50344507-50344526 | None:intergenic | 40.0% |
| CAGTATCAATACCATCATCC+GGG | + | chr4_4:50344524-50344543 | None:intergenic | 40.0% | |
| GTTATTGTGACCATCACTCA+TGG | + | chr4_4:50344703-50344722 | None:intergenic | 40.0% | |
| TATCTATGACGAACCTGTGA+TGG | - | chr4_4:50344746-50344765 | Msa0686020:intron | 40.0% | |
| ATCTATGACGAACCTGTGAT+GGG | - | chr4_4:50344747-50344766 | Msa0686020:intron | 40.0% | |
| TAGTTCATACCACGAGGATA+TGG | - | chr4_4:50344781-50344800 | Msa0686020:intron | 40.0% | |
| AGTTCATACCACGAGGATAT+GGG | - | chr4_4:50344782-50344801 | Msa0686020:intron | 40.0% | |
| ATTGTAAACCCATATCCTCG+TGG | + | chr4_4:50344793-50344812 | None:intergenic | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | + | chr4_4:50344837-50344856 | None:intergenic | 40.0% | |
| CGATCCAAAAGCTCAATTGA+AGG | + | chr4_4:50344846-50344865 | None:intergenic | 40.0% | |
| ATTGAGCGCAGAGAAAGAGA+AGG | - | chr4_4:50340753-50340772 | Msa0686020:CDS | 45.0% | |
| AATCGTCACCTACCTATTGC+TGG | - | chr4_4:50340912-50340931 | Msa0686020:CDS | 45.0% | |
| CTACATGATGTGGGTCATTG+AGG | - | chr4_4:50341139-50341158 | Msa0686020:CDS | 45.0% | |
| CGACAAATCAGGCTCATAGA+GGG | + | chr4_4:50341819-50341838 | None:intergenic | 45.0% | |
| ACGACAAATCAGGCTCATAG+AGG | + | chr4_4:50341820-50341839 | None:intergenic | 45.0% | |
| GGTATTTAGGCGCGTTCTAA+AGG | - | chr4_4:50341871-50341890 | Msa0686020:intron | 45.0% | |
| ! | AGCCCTTTCAGAGGTCTTTT+AGG | - | chr4_4:50341990-50342009 | Msa0686020:intron | 45.0% |
| ! | CTTTCAGGTGAATGAGACTC+TGG | + | chr4_4:50342197-50342216 | None:intergenic | 45.0% |
| ! | AGGTGAGTGAGTTGACAGAA+AGG | - | chr4_4:50344157-50344176 | Msa0686020:intron | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | - | chr4_4:50344240-50344259 | Msa0686020:intron | 45.0% |
| ATCAGGAGCAACAGTAGGAT+TGG | + | chr4_4:50344286-50344305 | None:intergenic | 45.0% | |
| GATTCATCAGGAGCAACAGT+AGG | + | chr4_4:50344291-50344310 | None:intergenic | 45.0% | |
| ATTTGCCAATCTCGGGTTCA+CGG | + | chr4_4:50344313-50344332 | None:intergenic | 45.0% | |
| TACAAAAGAGACCCGGATGA+TGG | - | chr4_4:50344510-50344529 | Msa0686020:intron | 45.0% | |
| TGGACTCAACATCCGAATCA+CGG | + | chr4_4:50344683-50344702 | None:intergenic | 45.0% | |
| GATGTTGAGTCCATGAGTGA+TGG | - | chr4_4:50344690-50344709 | Msa0686020:intron | 45.0% | |
| ! | CTCGATTAGTTCATACCACG+AGG | - | chr4_4:50344775-50344794 | Msa0686020:intron | 45.0% |
| ! | GCTTTCCAAGGAGAAAGCAT+GGG | - | chr4_4:50344878-50344897 | Msa0686020:intron | 45.0% |
| TTCATTCGCCGAAGCTTATC+AGG | + | chr4_4:50345086-50345105 | None:intergenic | 45.0% | |
| !! | GGAAAGGTTTGAGAGCATCT+TGG | + | chr4_4:50345139-50345158 | None:intergenic | 45.0% |
| !! | TAAAATCAAATTTATAAAAA+GGG | + | chr4_4:50341485-50341504 | None:intergenic | 5.0% |
| !! | TTAAAATCAAATTTATAAAA+AGG | + | chr4_4:50341486-50341505 | None:intergenic | 5.0% |
| !!! | TTATTTTAAAATAAAGTAAA+GGG | + | chr4_4:50342698-50342717 | None:intergenic | 5.0% |
| TCTTGGGTCCAGCAATAGGT+AGG | + | chr4_4:50340923-50340942 | None:intergenic | 50.0% | |
| TGAGTCTTGGGTCCAGCAAT+AGG | + | chr4_4:50340927-50340946 | None:intergenic | 50.0% | |
| TATTGCTGGACCCAAGACTC+AGG | - | chr4_4:50340926-50340945 | Msa0686020:CDS | 50.0% | |
| AGGCTTCAAGAAGCGAGTAG+AGG | - | chr4_4:50341891-50341910 | Msa0686020:intron | 50.0% | |
| CTTCAAGAAGCGAGTAGAGG+CGG | - | chr4_4:50341894-50341913 | Msa0686020:intron | 50.0% | |
| TAAAAGGGCCATGAGGCTCA+AGG | + | chr4_4:50341939-50341958 | None:intergenic | 50.0% | |
| ! | TTGAGCCTCATGGCCCTTTT+AGG | - | chr4_4:50341938-50341957 | Msa0686020:intron | 50.0% |
| AGCCTTAGCGCCTCCTAAAA+GGG | + | chr4_4:50341954-50341973 | None:intergenic | 50.0% | |
| AAGCCTTAGCGCCTCCTAAA+AGG | + | chr4_4:50341955-50341974 | None:intergenic | 50.0% | |
| ! | AGGCGCTAAGGCTTCTGAAA+GGG | - | chr4_4:50341961-50341980 | Msa0686020:intron | 50.0% |
| GGGTCTAAAAGCCCTTTCAG+AGG | - | chr4_4:50341981-50342000 | Msa0686020:intron | 50.0% | |
| TGCAGAGCAAGGAAAAGACC+AGG | - | chr4_4:50344188-50344207 | Msa0686020:intron | 50.0% | |
| TGAATCCGTGAACCCGAGAT+TGG | - | chr4_4:50344305-50344324 | Msa0686020:intron | 50.0% | |
| CTCGAGGGTCTCCTTAACAT+TGG | + | chr4_4:50344388-50344407 | None:intergenic | 50.0% | |
| CAATGTTAAGGAGACCCTCG+AGG | - | chr4_4:50344386-50344405 | Msa0686020:intron | 50.0% | |
| ATTGGTGAACCAGACCTCGA+GGG | + | chr4_4:50344403-50344422 | None:intergenic | 50.0% | |
| TATTGGTGAACCAGACCTCG+AGG | + | chr4_4:50344404-50344423 | None:intergenic | 50.0% | |
| TCTAGTTGTTGCCTTCGACG+AGG | - | chr4_4:50344449-50344468 | Msa0686020:intron | 50.0% | |
| !! | ATGACGAACCTGTGATGGGT+TGG | - | chr4_4:50344751-50344770 | Msa0686020:intron | 50.0% |
| AATCGAGACCAACCCATCAC+AGG | + | chr4_4:50344762-50344781 | None:intergenic | 50.0% | |
| ! | TTTTGGATCGTGTCGCGACA+AGG | - | chr4_4:50344856-50344875 | Msa0686020:intron | 50.0% |
| GGCTTTCCAAGGAGAAAGCA+TGG | - | chr4_4:50344877-50344896 | Msa0686020:intron | 50.0% | |
| TTGGTCCCATGCTTTCTCCT+TGG | + | chr4_4:50344886-50344905 | None:intergenic | 50.0% | |
| ! | CTCTTTTATCCGTCCCATCC+CGG | - | chr4_4:50344924-50344943 | Msa0686020:intron | 50.0% |
| AGCATGAAGCCCGTCATAAC+CGG | + | chr4_4:50344946-50344965 | None:intergenic | 50.0% | |
| TTCGCCGAAGCTTATCAGGA+TGG | + | chr4_4:50345082-50345101 | None:intergenic | 50.0% | |
| GCTCTCAAACCTTTCCCTGA+TGG | - | chr4_4:50345143-50345162 | Msa0686020:CDS | 50.0% | |
| CACTTTGAGCCATCAGGGAA+AGG | + | chr4_4:50345155-50345174 | None:intergenic | 50.0% | |
| CTTTCCCTGATGGCTCAAAG+TGG | - | chr4_4:50345153-50345172 | Msa0686020:CDS | 50.0% | |
| CGGACACGGAGTGTGAAAGT+TGG | + | chr4_4:50341306-50341325 | None:intergenic | 55.0% | |
| ! | AGCCTCATGGCCCTTTTAGG+AGG | - | chr4_4:50341941-50341960 | Msa0686020:intron | 55.0% |
| ! | GAGGCGCTAAGGCTTCTGAA+AGG | - | chr4_4:50341960-50341979 | Msa0686020:intron | 55.0% |
| AGGCTTCAGCTTGCAGAGCA+AGG | - | chr4_4:50344177-50344196 | Msa0686020:intron | 55.0% | |
| CTCGGGTTCACGGATTCATC+AGG | + | chr4_4:50344303-50344322 | None:intergenic | 55.0% | |
| TTAAGGAGACCCTCGAGGTC+TGG | - | chr4_4:50344391-50344410 | Msa0686020:intron | 55.0% | |
| TGTCGCGACAAGGCTTTCCA+AGG | - | chr4_4:50344866-50344885 | Msa0686020:intron | 55.0% | |
| AAGCCCGTCATAACCGGGAT+GGG | + | chr4_4:50344940-50344959 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+GGG | + | chr4_4:50344945-50344964 | None:intergenic | 55.0% | |
| ! | AGCGAGTAGAGGCGGTGTCA+TGG | - | chr4_4:50341902-50341921 | Msa0686020:intron | 60.0% |
| !! | GCGAGTAGAGGCGGTGTCAT+GGG | - | chr4_4:50341903-50341922 | Msa0686020:intron | 60.0% |
| !! | CGAGTAGAGGCGGTGTCATG+GGG | - | chr4_4:50341904-50341923 | Msa0686020:intron | 60.0% |
| CGCCTCCTAAAAGGGCCATG+AGG | + | chr4_4:50341946-50341965 | None:intergenic | 60.0% | |
| !!! | GGCCCTTTTAGGAGGCGCTA+AGG | - | chr4_4:50341949-50341968 | Msa0686020:intron | 60.0% |
| GAGGGAGAGCAGCTGTCTCT+GGG | - | chr4_4:50344556-50344575 | Msa0686020:intron | 60.0% | |
| CCGTCATAACCGGGATGGGA+CGG | + | chr4_4:50344936-50344955 | None:intergenic | 60.0% | |
| CCGTCCCATCCCGGTTATGA+CGG | - | chr4_4:50344933-50344952 | Msa0686020:intron | 60.0% | |
| CGTCCCATCCCGGTTATGAC+GGG | - | chr4_4:50344934-50344953 | Msa0686020:intron | 60.0% | |
| GAAGCCCGTCATAACCGGGA+TGG | + | chr4_4:50344941-50344960 | None:intergenic | 60.0% | |
| !! | GTAGAGGCGGTGTCATGGGG+AGG | - | chr4_4:50341907-50341926 | Msa0686020:intron | 65.0% |
| GGAACGCGCCTTGAGCCTCA+TGG | - | chr4_4:50341928-50341947 | Msa0686020:intron | 65.0% | |
| GGAGGGAGAGCAGCTGTCTC+TGG | - | chr4_4:50344555-50344574 | Msa0686020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 50340750 | 50345178 | 50340750 | ID=Msa0686020;Name=Msa0686020 |
| chr4_4 | mRNA | 50340750 | 50345178 | 50340750 | ID=Msa0686020-mRNA-1;Parent=Msa0686020;Name=Msa0686020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|438 |
| chr4_4 | exon | 50344981 | 50345178 | 50344981 | ID=Msa0686020-mRNA-1:exon:12863;Parent=Msa0686020-mRNA-1 |
| chr4_4 | exon | 50340750 | 50341868 | 50340750 | ID=Msa0686020-mRNA-1:exon:12862;Parent=Msa0686020-mRNA-1 |
| chr4_4 | CDS | 50344981 | 50345178 | 50344981 | ID=Msa0686020-mRNA-1:cds;Parent=Msa0686020-mRNA-1 |
| chr4_4 | CDS | 50340750 | 50341868 | 50340750 | ID=Msa0686020-mRNA-1:cds;Parent=Msa0686020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
