Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704000 | XP_013447005.1 | 70.472 | 254 | 13 | 3 | 1 | 192 | 1 | 254 | 1.67e-116 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704000 | A0A072TUC9 | 70.472 | 254 | 13 | 3 | 1 | 192 | 1 | 254 | 7.97e-117 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638550 | Msa0704000 | 0.800031 | 1.744363e-48 | -8.615850e-47 |
| Msa0697230 | Msa0704000 | 0.806734 | 7.121995e-50 | -8.615850e-47 |
| Msa0704000 | Msa0704040 | 0.917450 | 5.230200e-86 | -8.615850e-47 |
| Msa0704000 | Msa0772160 | 0.805655 | 1.202173e-49 | -8.615850e-47 |
| Msa0704000 | Msa0978440 | 0.809130 | 2.202738e-50 | -8.615850e-47 |
| Msa0704000 | Msa1134830 | 0.806134 | 9.532405e-50 | -8.615850e-47 |
| Msa0704000 | Msa1229880 | 0.819826 | 9.471620e-53 | -8.615850e-47 |
| Msa0704000 | Msa1267800 | 0.821097 | 4.837905e-53 | -8.615850e-47 |
| Msa0704000 | Msa1310620 | 0.837103 | 6.331444e-57 | -8.615850e-47 |
| Msa0704000 | Msa1350350 | 0.804898 | 1.731878e-49 | -8.615850e-47 |
| Msa0704000 | Msa1368800 | 0.803704 | 3.069997e-49 | -8.615850e-47 |
| Msa0704000 | Msa1374610 | 0.800736 | 1.253135e-48 | -8.615850e-47 |
| Msa0225050 | Msa0704000 | 0.803302 | 3.719811e-49 | -8.615850e-47 |
| Msa0439120 | Msa0704000 | 0.801427 | 9.049364e-49 | -8.615850e-47 |
| Msa0508770 | Msa0704000 | 0.813132 | 2.987813e-51 | -8.615850e-47 |
| Msa0567680 | Msa0704000 | 0.844027 | 9.749833e-59 | -8.615850e-47 |
| Msa0567700 | Msa0704000 | 0.843409 | 1.426505e-58 | -8.615850e-47 |
| Msa0567720 | Msa0704000 | 0.834531 | 2.840380e-56 | -8.615850e-47 |
| Msa0567970 | Msa0704000 | 0.833395 | 5.467039e-56 | -8.615850e-47 |
| Msa0568810 | Msa0704000 | 0.802868 | 4.574527e-49 | -8.615850e-47 |
| Msa0571220 | Msa0704000 | 0.805228 | 1.476950e-49 | -8.615850e-47 |
| Msa0598680 | Msa0704000 | 0.805662 | 1.197938e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704000 | MtrunA17_Chr8g0386421 | 70.472 | 254 | 13 | 3 | 1 | 192 | 1 | 254 | 1.53e-120 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704000 | AT2G32500.2 | 50.667 | 150 | 57 | 3 | 62 | 194 | 86 | 235 | 4.07e-42 | 143 |
| Msa0704000 | AT2G32500.1 | 47.656 | 128 | 50 | 3 | 62 | 172 | 86 | 213 | 5.78e-31 | 113 |
Find 80 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATCTGTTTATTGTTTC+GGG | 0.115077 | 4_4:+76064268 | Msa0704000:three_prime_UTR |
| TCCTTACATCTTTATATTCT+TGG | 0.165785 | 4_4:-76063466 | None:intergenic |
| CTGCTATCTGTTTATTGTTT+CGG | 0.203560 | 4_4:+76064267 | Msa0704000:three_prime_UTR |
| TTTCCACTCACATGTTCTTT+TGG | 0.254274 | 4_4:+76064128 | Msa0704000:three_prime_UTR |
| AATGAAGAGACAGTGATTTC+AGG | 0.265594 | 4_4:-76063907 | None:intergenic |
| CTTGAGAACCTTCAAGTAAA+AGG | 0.266883 | 4_4:-76062136 | None:intergenic |
| ATGGGTTAGCACAGACAAAT+TGG | 0.272280 | 4_4:-76063388 | None:intergenic |
| ACTCTCATCTGATTCTTCTT+TGG | 0.275343 | 4_4:-76061174 | None:intergenic |
| TTGTCTGTGCTAACCCATTC+TGG | 0.285901 | 4_4:+76063393 | Msa0704000:three_prime_UTR |
| AATGCATTAGCCAGCTAAAA+AGG | 0.310769 | 4_4:+76060919 | Msa0704000:five_prime_UTR |
| GGAACATGCACTGGCATCTC+TGG | 0.334936 | 4_4:+76063028 | Msa0704000:CDS |
| TCAGATATAAACCGTGAGAT+TGG | 0.359114 | 4_4:-76063352 | None:intergenic |
| GAATTTCAACGAAAGTTCTA+AGG | 0.371566 | 4_4:+76063287 | Msa0704000:CDS |
| TTTCAGCTTGCCAGTGGAAT+GGG | 0.373534 | 4_4:+76061139 | Msa0704000:intron |
| GTAGAAAAGCTGCGAGCATT+TGG | 0.374035 | 4_4:-76064039 | None:intergenic |
| TCATCTGATTCTTCTTTGGT+TGG | 0.376105 | 4_4:-76061170 | None:intergenic |
| TTTCCTCTGATAAGCGAGAT+TGG | 0.384256 | 4_4:-76061223 | None:intergenic |
| TTCTTAAAGCTCAATGTGTC+TGG | 0.392150 | 4_4:+76064242 | Msa0704000:three_prime_UTR |
| TGTCTGCCACTTGAAGTATA+TGG | 0.403988 | 4_4:-76063999 | None:intergenic |
| GATAAGCGAGATTGGAGCTT+TGG | 0.414590 | 4_4:-76061215 | None:intergenic |
| TCTAGCTTATGTGCTCCTGC+AGG | 0.440665 | 4_4:+76062021 | Msa0704000:intron |
| AAAATAAAATTATATTGAAA+AGG | 0.440829 | 4_4:-76064368 | None:intergenic |
| GACAGTGATTTCAGGACAAT+AGG | 0.441297 | 4_4:-76063899 | None:intergenic |
| TCATTTAATGAGGGTACCTT+AGG | 0.442429 | 4_4:+76062996 | Msa0704000:intron |
| ATATTAAAAGTGTACCTTGA+AGG | 0.446290 | 4_4:-76064320 | None:intergenic |
| TTCTGAAACTCAATTGTCAT+AGG | 0.449277 | 4_4:+76064186 | Msa0704000:three_prime_UTR |
| CATTTCTCTGTTGATCCAGT+GGG | 0.450126 | 4_4:+76063926 | Msa0704000:three_prime_UTR |
| AAAGGTAAAGATAGAGGTGT+TGG | 0.454888 | 4_4:-76061029 | None:intergenic |
| ATCTCGCTTATCAGAGGAAA+AGG | 0.455399 | 4_4:+76061226 | Msa0704000:CDS |
| AAGGTAAAGATAGAGGTGTT+GGG | 0.456800 | 4_4:-76061028 | None:intergenic |
| CAGATATAAACCGTGAGATT+GGG | 0.460477 | 4_4:-76063351 | None:intergenic |
| TCTTTACCTTTACCTTTACA+AGG | 0.466964 | 4_4:+76061041 | Msa0704000:CDS |
| TGAAGTAACTTACCTTGTAA+AGG | 0.483806 | 4_4:-76061053 | None:intergenic |
| GGCTCTTGAACCCATTCCAC+TGG | 0.483835 | 4_4:-76061149 | None:intergenic |
| TCATTTCTCTGTTGATCCAG+TGG | 0.484155 | 4_4:+76063925 | Msa0704000:three_prime_UTR |
| TTGAAAAGGTTACATTGTGT+TGG | 0.487010 | 4_4:-76064354 | None:intergenic |
| AAAGGTAAAGGTAAAGATAG+AGG | 0.496541 | 4_4:-76061035 | None:intergenic |
| TGGGTTAGCACAGACAAATT+GGG | 0.497351 | 4_4:-76063387 | None:intergenic |
| TTGTGTAAATTGTACTATCA+AGG | 0.504240 | 4_4:-76063075 | None:intergenic |
| ACAATTGAGTTTCAGAATGT+TGG | 0.505112 | 4_4:-76064180 | None:intergenic |
| ATGTCAAAATCAAACCTTCA+AGG | 0.507168 | 4_4:+76064306 | Msa0704000:three_prime_UTR |
| TGAAAAGGTTACATTGTGTT+GGG | 0.507546 | 4_4:-76064353 | None:intergenic |
| ATGATGTCATACACCAGAAT+GGG | 0.509698 | 4_4:-76063406 | None:intergenic |
| TGAGCAGAAACACGCCCTGC+AGG | 0.514909 | 4_4:-76062036 | None:intergenic |
| ACAGCATGAGTATAGTGGTC+AGG | 0.516130 | 4_4:-76062063 | None:intergenic |
| TACATAAGCTCGGTTCCCAC+TGG | 0.518561 | 4_4:-76063941 | None:intergenic |
| TGTAAACAGCATGAGTATAG+TGG | 0.519619 | 4_4:-76062068 | None:intergenic |
| GACATCATCTTCTGCAGTTG+AGG | 0.521076 | 4_4:+76063421 | Msa0704000:three_prime_UTR |
| TACTTGCCATATACTTCAAG+TGG | 0.529494 | 4_4:+76063993 | Msa0704000:three_prime_UTR |
| TAACCAGGCGGAACATGCAC+TGG | 0.530562 | 4_4:+76063019 | Msa0704000:CDS |
| AACTTACCTTGTAAAGGTAA+AGG | 0.535195 | 4_4:-76061047 | None:intergenic |
| ATGCCAGTGCATGTTCCGCC+TGG | 0.536544 | 4_4:-76063022 | None:intergenic |
| GATGATGTCATACACCAGAA+TGG | 0.544398 | 4_4:-76063407 | None:intergenic |
| TTTCTACTTGAAATGTGACT+TGG | 0.549173 | 4_4:+76064055 | Msa0704000:three_prime_UTR |
| ATGTGAGTGGAAATAGAAGC+AGG | 0.552159 | 4_4:-76064118 | None:intergenic |
| AGTTCTAAGGAGTATACTCA+TGG | 0.556075 | 4_4:+76063300 | Msa0704000:CDS |
| GTGATTTCAGGACAATAGGC+TGG | 0.558184 | 4_4:-76063895 | None:intergenic |
| ATCTCTGGCAACAGTGATGT+TGG | 0.558570 | 4_4:+76063043 | Msa0704000:CDS |
| CTAGCTTATGTGCTCCTGCA+GGG | 0.560601 | 4_4:+76062022 | Msa0704000:intron |
| GTAGTGATACGATTTCGATC+AGG | 0.566672 | 4_4:+76063324 | Msa0704000:CDS |
| CGAAACAATAAACAGATAGC+AGG | 0.568699 | 4_4:-76064266 | None:intergenic |
| GTTTCAGGGATTAATTAATG+TGG | 0.569081 | 4_4:+76062286 | Msa0704000:intron |
| ATGTTCCGCCTGGTTACCTA+AGG | 0.573483 | 4_4:-76063012 | None:intergenic |
| ATCAGGTGATCCCAATCTCA+CGG | 0.579743 | 4_4:+76063341 | Msa0704000:CDS |
| ATGATTTATATATTTCGCAA+AGG | 0.580470 | 4_4:+76062335 | Msa0704000:CDS |
| AGGTAAAGATAGAGGTGTTG+GGG | 0.581375 | 4_4:-76061027 | None:intergenic |
| TGAGGGTACCTTAGGTAACC+AGG | 0.595164 | 4_4:+76063004 | Msa0704000:intron |
| GTAAATTGTACTATCAAGGA+AGG | 0.603275 | 4_4:-76063071 | None:intergenic |
| ATACTCATGCTGTTTACATG+CGG | 0.603282 | 4_4:+76062073 | Msa0704000:CDS |
| TTATCCTCACTACATAAGCT+CGG | 0.606028 | 4_4:-76063951 | None:intergenic |
| TTATATATTTCGCAAAGGAG+AGG | 0.620757 | 4_4:+76062340 | Msa0704000:CDS |
| GCTCCAATCTCGCTTATCAG+AGG | 0.623806 | 4_4:+76061220 | Msa0704000:CDS |
| TAGCCAAAAGAACATGTGAG+TGG | 0.632547 | 4_4:-76064131 | None:intergenic |
| GGTGTTGGGGTGAATTGACG+AGG | 0.673613 | 4_4:-76061014 | None:intergenic |
| GGAACCGAGCTTATGTAGTG+AGG | 0.674016 | 4_4:+76063947 | Msa0704000:three_prime_UTR |
| GCTGCGTATAAATATCTCGA+AGG | 0.686766 | 4_4:-76063444 | None:intergenic |
| TTGATAGTACAATTTACACA+AGG | 0.690159 | 4_4:+76063077 | Msa0704000:CDS |
| GTTAGCACAGACAAATTGGG+AGG | 0.720395 | 4_4:-76063384 | None:intergenic |
| GTGTTGGGGTGAATTGACGA+GGG | 0.732265 | 4_4:-76061013 | None:intergenic |
| GGGTACCTTAGGTAACCAGG+CGG | 0.811298 | 4_4:+76063007 | Msa0704000:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCAGTTTTTTTTTTA+AGG | - | chr4_4:76063781-76063800 | None:intergenic | 10.0% |
| !! | AATATAAACTAAACTATATT+TGG | + | chr4_4:76063842-76063861 | Msa0704000:intron | 10.0% |
| !! | TAATAATGTTATTACGTATT+AGG | + | chr4_4:76061267-76061286 | Msa0704000:intron | 15.0% |
| !!! | TATCTATTTTTTTCAACATT+AGG | + | chr4_4:76061857-76061876 | Msa0704000:intron | 15.0% |
| !! | TTTCTCATTAAATGAAATTA+AGG | - | chr4_4:76062569-76062588 | None:intergenic | 15.0% |
| !! | GTTATTAATATTTAATTGTC+AGG | + | chr4_4:76063261-76063280 | Msa0704000:intron | 15.0% |
| !!! | TAAAACATTATTTTATGCTT+AGG | + | chr4_4:76063511-76063530 | Msa0704000:intron | 15.0% |
| !! | AATCATAATGACATGAAAAA+TGG | - | chr4_4:76061303-76061322 | None:intergenic | 20.0% |
| !!! | AAATTTAAGTTAGTTTAACG+AGG | + | chr4_4:76061493-76061512 | Msa0704000:intron | 20.0% |
| !!! | ACAACATTTACTTTGTTATT+AGG | + | chr4_4:76061552-76061571 | Msa0704000:intron | 20.0% |
| !!! | ATTAAACTAACCTTGTTTTT+TGG | - | chr4_4:76061729-76061748 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAGTTTAATATTT+AGG | + | chr4_4:76061733-76061752 | Msa0704000:intron | 20.0% |
| !! | TAAGAGTAACAGAAAAATAA+AGG | - | chr4_4:76062220-76062239 | None:intergenic | 20.0% |
| !! | ATGATTTATATATTTCGCAA+AGG | + | chr4_4:76062335-76062354 | Msa0704000:CDS | 20.0% |
| !!! | AAAGTAGTGTTGTTAAATAA+CGG | - | chr4_4:76062921-76062940 | None:intergenic | 20.0% |
| !!! | TCTTTTGATATCATTTAATG+AGG | + | chr4_4:76062986-76063005 | Msa0704000:intron | 20.0% |
| !!! | CTTTTGATATCATTTAATGA+GGG | + | chr4_4:76062987-76063006 | Msa0704000:intron | 20.0% |
| !! | TAAAAGATCTAATTACACAA+CGG | - | chr4_4:76063151-76063170 | None:intergenic | 20.0% |
| !!! | TGTAATTAGATCTTTTAACA+TGG | + | chr4_4:76063154-76063173 | Msa0704000:intron | 20.0% |
| !! | TGTAAAATGTATTTATCTAC+AGG | - | chr4_4:76063741-76063760 | None:intergenic | 20.0% |
| !! | AACTAAACTATATTTGGATT+TGG | + | chr4_4:76063848-76063867 | Msa0704000:intron | 20.0% |
| !!! | AATACATCAGATTTTTCTAT+TGG | + | chr4_4:76064415-76064434 | Msa0704000:three_prime_UTR | 20.0% |
| !!! | ACAGTTTCTTTATTTTTGAA+AGG | + | chr4_4:76064445-76064464 | Msa0704000:three_prime_UTR | 20.0% |
| !!! | GGTATTATTGCTATTTCATT+AGG | + | chr4_4:76061468-76061487 | Msa0704000:intron | 25.0% |
| ! | ATTCTAGATGAAATTCATGT+GGG | - | chr4_4:76061640-76061659 | None:intergenic | 25.0% |
| !! | AGTTTTCATAGAACTTTTCA+AGG | - | chr4_4:76062116-76062135 | None:intergenic | 25.0% |
| ! | AAAATAAAGGAAAAGAGAGT+CGG | - | chr4_4:76062207-76062226 | None:intergenic | 25.0% |
| ! | CTCATTAAATGAAATTAAGG+TGG | - | chr4_4:76062566-76062585 | None:intergenic | 25.0% |
| ! | TTGTGTAAATTGTACTATCA+AGG | - | chr4_4:76063078-76063097 | None:intergenic | 25.0% |
| !! | TTGATAGTACAATTTACACA+AGG | + | chr4_4:76063077-76063096 | Msa0704000:CDS | 25.0% |
| ! | AGTAGAAAATCAAAACATAC+TGG | - | chr4_4:76063238-76063257 | None:intergenic | 25.0% |
| ! | TCCTTACATCTTTATATTCT+TGG | - | chr4_4:76063469-76063488 | None:intergenic | 25.0% |
| !! | TATATTTGGATTTGGTAAAC+AGG | + | chr4_4:76063856-76063875 | Msa0704000:intron | 25.0% |
| !! | ATATTAAAAGTGTACCTTGA+AGG | - | chr4_4:76064323-76064342 | None:intergenic | 25.0% |
| AAAGGTAAAGGTAAAGATAG+AGG | - | chr4_4:76061038-76061057 | None:intergenic | 30.0% | |
| TCTTTACCTTTACCTTTACA+AGG | + | chr4_4:76061041-76061060 | Msa0704000:CDS | 30.0% | |
| AACTTACCTTGTAAAGGTAA+AGG | - | chr4_4:76061050-76061069 | None:intergenic | 30.0% | |
| TGAAGTAACTTACCTTGTAA+AGG | - | chr4_4:76061056-76061075 | None:intergenic | 30.0% | |
| TTCATGTAGAAGAAAAGTTG+TGG | + | chr4_4:76061350-76061369 | Msa0704000:intron | 30.0% | |
| AAAGGAGAAATTATCTGAAG+AGG | + | chr4_4:76061395-76061414 | Msa0704000:intron | 30.0% | |
| TACACAACCCAATATCAAAT+GGG | + | chr4_4:76061444-76061463 | Msa0704000:intron | 30.0% | |
| AATACCACCCATTTGATATT+GGG | - | chr4_4:76061454-76061473 | None:intergenic | 30.0% | |
| TAATACCACCCATTTGATAT+TGG | - | chr4_4:76061455-76061474 | None:intergenic | 30.0% | |
| ACACTCAAACACATTGAATT+GGG | + | chr4_4:76061594-76061613 | Msa0704000:intron | 30.0% | |
| CATTCTAGATGAAATTCATG+TGG | - | chr4_4:76061641-76061660 | None:intergenic | 30.0% | |
| !!! | CCTTGTTTTTTGGTAATAGA+TGG | - | chr4_4:76061719-76061738 | None:intergenic | 30.0% |
| CCATCTATTACCAAAAAACA+AGG | + | chr4_4:76061716-76061735 | Msa0704000:intron | 30.0% | |
| TGTGTTCTACATGTTACATT+TGG | - | chr4_4:76061767-76061786 | None:intergenic | 30.0% | |
| GATCCAGAAAGAACAAAAAA+AGG | + | chr4_4:76061948-76061967 | Msa0704000:intron | 30.0% | |
| !!! | TAGCCTTTTTTTGTTCTTTC+TGG | - | chr4_4:76061954-76061973 | None:intergenic | 30.0% |
| ! | TGAAAACTCCTTTTACTTGA+AGG | + | chr4_4:76062128-76062147 | Msa0704000:CDS | 30.0% |
| !!! | ACCTTTACTGATTTTGTTTC+AGG | + | chr4_4:76062271-76062290 | Msa0704000:intron | 30.0% |
| !!! | CCTTTACTGATTTTGTTTCA+GGG | + | chr4_4:76062272-76062291 | Msa0704000:intron | 30.0% |
| GTTTCAGGGATTAATTAATG+TGG | + | chr4_4:76062286-76062305 | Msa0704000:intron | 30.0% | |
| TTATATATTTCGCAAAGGAG+AGG | + | chr4_4:76062340-76062359 | Msa0704000:CDS | 30.0% | |
| !! | CTGATTTACTTTTCCTCTTA+TGG | + | chr4_4:76062369-76062388 | Msa0704000:intron | 30.0% |
| TCAATTTATCGATCCATAAG+AGG | - | chr4_4:76062385-76062404 | None:intergenic | 30.0% | |
| CAATTCATATTTGACCATAG+AGG | + | chr4_4:76062428-76062447 | Msa0704000:intron | 30.0% | |
| TTCCTATATACTTCAGTCTT+AGG | + | chr4_4:76062715-76062734 | Msa0704000:intron | 30.0% | |
| ATCCTAAGACTGAAGTATAT+AGG | - | chr4_4:76062720-76062739 | None:intergenic | 30.0% | |
| ! | TTTAAATGAATTTTGTCGCC+AGG | + | chr4_4:76062938-76062957 | Msa0704000:intron | 30.0% |
| GTAAATTGTACTATCAAGGA+AGG | - | chr4_4:76063074-76063093 | None:intergenic | 30.0% | |
| AACATCTGAATAAATGTTGG+TGG | - | chr4_4:76063116-76063135 | None:intergenic | 30.0% | |
| !! | GATCTTTTAACATGGTTTGT+TGG | + | chr4_4:76063162-76063181 | Msa0704000:intron | 30.0% |
| !!! | AACAGTTCATTGTTTTGACA+AGG | + | chr4_4:76063191-76063210 | Msa0704000:intron | 30.0% |
| GAATTTCAACGAAAGTTCTA+AGG | + | chr4_4:76063287-76063306 | Msa0704000:CDS | 30.0% | |
| GCCAAGAATATAAAGATGTA+AGG | + | chr4_4:76063465-76063484 | Msa0704000:intron | 30.0% | |
| ATCCCGAGTTATATAGTTTA+CGG | - | chr4_4:76063566-76063585 | None:intergenic | 30.0% | |
| TATAACTCGGGATATTTGTT+TGG | + | chr4_4:76063573-76063592 | Msa0704000:intron | 30.0% | |
| ATAACTCGGGATATTTGTTT+GGG | + | chr4_4:76063574-76063593 | Msa0704000:intron | 30.0% | |
| TTTCTACTTGAAATGTGACT+TGG | + | chr4_4:76064055-76064074 | Msa0704000:three_prime_UTR | 30.0% | |
| !! | TTTTAGGAACAAGGAACATA+TGG | + | chr4_4:76064089-76064108 | Msa0704000:three_prime_UTR | 30.0% |
| ACAATTGAGTTTCAGAATGT+TGG | - | chr4_4:76064183-76064202 | None:intergenic | 30.0% | |
| !! | TTCTGAAACTCAATTGTCAT+AGG | + | chr4_4:76064186-76064205 | Msa0704000:three_prime_UTR | 30.0% |
| CTGCTATCTGTTTATTGTTT+CGG | + | chr4_4:76064267-76064286 | Msa0704000:three_prime_UTR | 30.0% | |
| TGCTATCTGTTTATTGTTTC+GGG | + | chr4_4:76064268-76064287 | Msa0704000:three_prime_UTR | 30.0% | |
| ATGTCAAAATCAAACCTTCA+AGG | + | chr4_4:76064306-76064325 | Msa0704000:three_prime_UTR | 30.0% | |
| TGAAAAGGTTACATTGTGTT+GGG | - | chr4_4:76064356-76064375 | None:intergenic | 30.0% | |
| TTGAAAAGGTTACATTGTGT+TGG | - | chr4_4:76064357-76064376 | None:intergenic | 30.0% | |
| AATGCATTAGCCAGCTAAAA+AGG | + | chr4_4:76060919-76060938 | Msa0704000:five_prime_UTR | 35.0% | |
| !! | ATTTTCACTGCCTTTTTAGC+TGG | - | chr4_4:76060932-76060951 | None:intergenic | 35.0% |
| !! | AAGGTAAAGATAGAGGTGTT+GGG | - | chr4_4:76061031-76061050 | None:intergenic | 35.0% |
| ! | AAAGGTAAAGATAGAGGTGT+TGG | - | chr4_4:76061032-76061051 | None:intergenic | 35.0% |
| TCATCTGATTCTTCTTTGGT+TGG | - | chr4_4:76061173-76061192 | None:intergenic | 35.0% | |
| ACTCTCATCTGATTCTTCTT+TGG | - | chr4_4:76061177-76061196 | None:intergenic | 35.0% | |
| GTACACAACCCAATATCAAA+TGG | + | chr4_4:76061443-76061462 | Msa0704000:intron | 35.0% | |
| CACACTCAAACACATTGAAT+TGG | + | chr4_4:76061593-76061612 | Msa0704000:intron | 35.0% | |
| TGTAAACAGCATGAGTATAG+TGG | - | chr4_4:76062071-76062090 | None:intergenic | 35.0% | |
| ! | ATACTCATGCTGTTTACATG+CGG | + | chr4_4:76062073-76062092 | Msa0704000:CDS | 35.0% |
| CTTGAGAACCTTCAAGTAAA+AGG | - | chr4_4:76062139-76062158 | None:intergenic | 35.0% | |
| ! | CTTTTACTTGAAGGTTCTCA+AGG | + | chr4_4:76062137-76062156 | Msa0704000:CDS | 35.0% |
| TTTACATGTTGGTGCATACA+TGG | - | chr4_4:76062182-76062201 | None:intergenic | 35.0% | |
| !! | TCCTTATGAACGTTTTGACA+CGG | + | chr4_4:76062248-76062267 | Msa0704000:intron | 35.0% |
| CCCTGAAACAAAATCAGTAA+AGG | - | chr4_4:76062275-76062294 | None:intergenic | 35.0% | |
| TTAGTACTCACTCTCTTCAT+TGG | + | chr4_4:76062484-76062503 | Msa0704000:intron | 35.0% | |
| TTCATTGGATGAGATCAATG+TGG | + | chr4_4:76062499-76062518 | Msa0704000:intron | 35.0% | |
| GTAATAGATCCCACATTAAG+TGG | - | chr4_4:76062531-76062550 | None:intergenic | 35.0% | |
| TGGGATCTATTACAAAGTGT+GGG | + | chr4_4:76062538-76062557 | Msa0704000:intron | 35.0% | |
| AAAATGAACATAGTTGCTCC+TGG | + | chr4_4:76062678-76062697 | Msa0704000:intron | 35.0% | |
| AAATGAACATAGTTGCTCCT+GGG | + | chr4_4:76062679-76062698 | Msa0704000:intron | 35.0% | |
| TTGACTAATAGCAGCTATAG+TGG | - | chr4_4:76062816-76062835 | None:intergenic | 35.0% | |
| ! | GTGATTTGTACAAATTCCAG+TGG | + | chr4_4:76062869-76062888 | Msa0704000:intron | 35.0% |
| TTGTTAAATAACGGCTACAG+CGG | - | chr4_4:76062912-76062931 | None:intergenic | 35.0% | |
| AAAGAATAAACTCCACTCCA+TGG | - | chr4_4:76062971-76062990 | None:intergenic | 35.0% | |
| !! | TCATTTAATGAGGGTACCTT+AGG | + | chr4_4:76062996-76063015 | Msa0704000:intron | 35.0% |
| GGCAACATCTGAATAAATGT+TGG | - | chr4_4:76063119-76063138 | None:intergenic | 35.0% | |
| !! | AGTTCTAAGGAGTATACTCA+TGG | + | chr4_4:76063300-76063319 | Msa0704000:CDS | 35.0% |
| CAGATATAAACCGTGAGATT+GGG | - | chr4_4:76063354-76063373 | None:intergenic | 35.0% | |
| TCAGATATAAACCGTGAGAT+TGG | - | chr4_4:76063355-76063374 | None:intergenic | 35.0% | |
| ATGATGTCATACACCAGAAT+GGG | - | chr4_4:76063409-76063428 | None:intergenic | 35.0% | |
| !! | TGCTTAGGTAGCTTGTTAAA+TGG | + | chr4_4:76063526-76063545 | Msa0704000:intron | 35.0% |
| CTCCCGTAAACTATATAACT+CGG | + | chr4_4:76063560-76063579 | Msa0704000:intron | 35.0% | |
| TCCCGTAAACTATATAACTC+GGG | + | chr4_4:76063561-76063580 | Msa0704000:intron | 35.0% | |
| TCCCGAGTTATATAGTTTAC+GGG | - | chr4_4:76063565-76063584 | None:intergenic | 35.0% | |
| TAACTCGGGATATTTGTTTG+GGG | + | chr4_4:76063575-76063594 | Msa0704000:intron | 35.0% | |
| ATCATGCTATCATTTCCTCT+TGG | + | chr4_4:76063598-76063617 | Msa0704000:intron | 35.0% | |
| !! | GAATTGTGTCATTTACCAAG+AGG | - | chr4_4:76063616-76063635 | None:intergenic | 35.0% |
| ! | TTGGATTTGGTAAACAGGTA+TGG | + | chr4_4:76063861-76063880 | Msa0704000:intron | 35.0% |
| AATGAAGAGACAGTGATTTC+AGG | - | chr4_4:76063910-76063929 | None:intergenic | 35.0% | |
| TTATCCTCACTACATAAGCT+CGG | - | chr4_4:76063954-76063973 | None:intergenic | 35.0% | |
| TACTTGCCATATACTTCAAG+TGG | + | chr4_4:76063993-76064012 | Msa0704000:three_prime_UTR | 35.0% | |
| ! | CTTGGTTTCCTCTTCTTTTT+AGG | + | chr4_4:76064073-76064092 | Msa0704000:three_prime_UTR | 35.0% |
| !! | TCCTCTTCTTTTTAGGAACA+AGG | + | chr4_4:76064080-76064099 | Msa0704000:three_prime_UTR | 35.0% |
| TCCTTGTTCCTAAAAAGAAG+AGG | - | chr4_4:76064084-76064103 | None:intergenic | 35.0% | |
| ! | TTTCCACTCACATGTTCTTT+TGG | + | chr4_4:76064128-76064147 | Msa0704000:three_prime_UTR | 35.0% |
| TTCTTAAAGCTCAATGTGTC+TGG | + | chr4_4:76064242-76064261 | Msa0704000:three_prime_UTR | 35.0% | |
| CGAAACAATAAACAGATAGC+AGG | - | chr4_4:76064269-76064288 | None:intergenic | 35.0% | |
| !! | AGGTAAAGATAGAGGTGTTG+GGG | - | chr4_4:76061030-76061049 | None:intergenic | 40.0% |
| CTCAAATCAATGCATGCATG+CGG | - | chr4_4:76061095-76061114 | None:intergenic | 40.0% | |
| !!! | TTTCTTTTTCAGCTTGCCAG+TGG | + | chr4_4:76061133-76061152 | Msa0704000:intron | 40.0% |
| TTTCCTCTGATAAGCGAGAT+TGG | - | chr4_4:76061226-76061245 | None:intergenic | 40.0% | |
| ATCTCGCTTATCAGAGGAAA+AGG | + | chr4_4:76061226-76061245 | Msa0704000:CDS | 40.0% | |
| CATTTGTCTGCTCAAAGCAA+AGG | + | chr4_4:76061377-76061396 | Msa0704000:intron | 40.0% | |
| ACAACCCAATATCAAATGGG+TGG | + | chr4_4:76061447-76061466 | Msa0704000:intron | 40.0% | |
| TATCTATCAGCAGAGAAGAG+AGG | - | chr4_4:76061809-76061828 | None:intergenic | 40.0% | |
| GTGTCAAAACGTTCATAAGG+AGG | - | chr4_4:76062249-76062268 | None:intergenic | 40.0% | |
| TCCGTGTCAAAACGTTCATA+AGG | - | chr4_4:76062252-76062271 | None:intergenic | 40.0% | |
| ! | ATTTTGCTAGCACTCCTCTA+TGG | - | chr4_4:76062445-76062464 | None:intergenic | 40.0% |
| TAGATCCCACATTAAGTGGT+GGG | - | chr4_4:76062527-76062546 | None:intergenic | 40.0% | |
| ATAGATCCCACATTAAGTGG+TGG | - | chr4_4:76062528-76062547 | None:intergenic | 40.0% | |
| GTGGGATCTATTACAAAGTG+TGG | + | chr4_4:76062537-76062556 | Msa0704000:intron | 40.0% | |
| GGGATCTATTACAAAGTGTG+GGG | + | chr4_4:76062539-76062558 | Msa0704000:intron | 40.0% | |
| GGAATAAATACCTAGAACCC+AGG | - | chr4_4:76062699-76062718 | None:intergenic | 40.0% | |
| ACCACTAATCGCTGAAAAAG+TGG | + | chr4_4:76062753-76062772 | Msa0704000:intron | 40.0% | |
| !!! | ACCACTTTTTCAGCGATTAG+TGG | - | chr4_4:76062757-76062776 | None:intergenic | 40.0% |
| ATTACACAACGGCTAACACA+AGG | - | chr4_4:76063140-76063159 | None:intergenic | 40.0% | |
| GTAGTGATACGATTTCGATC+AGG | + | chr4_4:76063324-76063343 | Msa0704000:CDS | 40.0% | |
| !! | TGGGTTAGCACAGACAAATT+GGG | - | chr4_4:76063390-76063409 | None:intergenic | 40.0% |
| !! | ATGGGTTAGCACAGACAAAT+TGG | - | chr4_4:76063391-76063410 | None:intergenic | 40.0% |
| GATGATGTCATACACCAGAA+TGG | - | chr4_4:76063410-76063429 | None:intergenic | 40.0% | |
| GCTGCGTATAAATATCTCGA+AGG | - | chr4_4:76063447-76063466 | None:intergenic | 40.0% | |
| GACAGTGATTTCAGGACAAT+AGG | - | chr4_4:76063902-76063921 | None:intergenic | 40.0% | |
| TCATTTCTCTGTTGATCCAG+TGG | + | chr4_4:76063925-76063944 | Msa0704000:three_prime_UTR | 40.0% | |
| CATTTCTCTGTTGATCCAGT+GGG | + | chr4_4:76063926-76063945 | Msa0704000:three_prime_UTR | 40.0% | |
| ! | TGTCTGCCACTTGAAGTATA+TGG | - | chr4_4:76064002-76064021 | None:intergenic | 40.0% |
| ATGTGAGTGGAAATAGAAGC+AGG | - | chr4_4:76064121-76064140 | None:intergenic | 40.0% | |
| TAGCCAAAAGAACATGTGAG+TGG | - | chr4_4:76064134-76064153 | None:intergenic | 40.0% | |
| CATGCATGCGGTAACAAATG+AGG | - | chr4_4:76061083-76061102 | None:intergenic | 45.0% | |
| ! | TTTTCAGCTTGCCAGTGGAA+TGG | + | chr4_4:76061138-76061157 | Msa0704000:intron | 45.0% |
| TTTCAGCTTGCCAGTGGAAT+GGG | + | chr4_4:76061139-76061158 | Msa0704000:intron | 45.0% | |
| GATAAGCGAGATTGGAGCTT+TGG | - | chr4_4:76061218-76061237 | None:intergenic | 45.0% | |
| ACTCACACGTACCAATCACT+TGG | + | chr4_4:76061910-76061929 | Msa0704000:intron | 45.0% | |
| CTCACACGTACCAATCACTT+GGG | + | chr4_4:76061911-76061930 | Msa0704000:intron | 45.0% | |
| CTCTCATGTTCCCAAGTGAT+TGG | - | chr4_4:76061924-76061943 | None:intergenic | 45.0% | |
| ACAGCATGAGTATAGTGGTC+AGG | - | chr4_4:76062066-76062085 | None:intergenic | 45.0% | |
| ! | GAGAGTCGGTGTTTACATGT+TGG | - | chr4_4:76062193-76062212 | None:intergenic | 45.0% |
| TGGATCCCACCACTTAATGT+GGG | + | chr4_4:76062519-76062538 | Msa0704000:intron | 45.0% | |
| GCTTCTTTGGCCATAACCTA+GGG | + | chr4_4:76062620-76062639 | Msa0704000:intron | 45.0% | |
| CTTCTTTGGCCATAACCTAG+GGG | + | chr4_4:76062621-76062640 | Msa0704000:intron | 45.0% | |
| GGTATAATGCTACAGTCCAC+TGG | - | chr4_4:76062888-76062907 | None:intergenic | 45.0% | |
| TTAAATAACGGCTACAGCGG+TGG | - | chr4_4:76062909-76062928 | None:intergenic | 45.0% | |
| ATCTCTGGCAACAGTGATGT+TGG | + | chr4_4:76063043-76063062 | Msa0704000:CDS | 45.0% | |
| ATCAGGTGATCCCAATCTCA+CGG | + | chr4_4:76063341-76063360 | Msa0704000:CDS | 45.0% | |
| GTTAGCACAGACAAATTGGG+AGG | - | chr4_4:76063387-76063406 | None:intergenic | 45.0% | |
| TTGTCTGTGCTAACCCATTC+TGG | + | chr4_4:76063393-76063412 | Msa0704000:three_prime_UTR | 45.0% | |
| GACATCATCTTCTGCAGTTG+AGG | + | chr4_4:76063421-76063440 | Msa0704000:three_prime_UTR | 45.0% | |
| GTGATTTCAGGACAATAGGC+TGG | - | chr4_4:76063898-76063917 | None:intergenic | 45.0% | |
| GTAGAAAAGCTGCGAGCATT+TGG | - | chr4_4:76064042-76064061 | None:intergenic | 45.0% | |
| !! | AAAATAAAATTATATTGAAA+AGG | - | chr4_4:76064371-76064390 | None:intergenic | 5.0% |
| !!! | TTTTCAATATAATTTTATTT+TGG | + | chr4_4:76064370-76064389 | Msa0704000:three_prime_UTR | 5.0% |
| GTGTTGGGGTGAATTGACGA+GGG | - | chr4_4:76061016-76061035 | None:intergenic | 50.0% | |
| GCTCCAATCTCGCTTATCAG+AGG | + | chr4_4:76061220-76061239 | Msa0704000:CDS | 50.0% | |
| ! | TCTAGCTTATGTGCTCCTGC+AGG | + | chr4_4:76062021-76062040 | Msa0704000:intron | 50.0% |
| CTAGCTTATGTGCTCCTGCA+GGG | + | chr4_4:76062022-76062041 | Msa0704000:intron | 50.0% | |
| GTGGATCCCACCACTTAATG+TGG | + | chr4_4:76062518-76062537 | Msa0704000:intron | 50.0% | |
| ACGTTGCTAGCACGCTTCTT+TGG | + | chr4_4:76062607-76062626 | Msa0704000:intron | 50.0% | |
| CGCTTCTTTGGCCATAACCT+AGG | + | chr4_4:76062619-76062638 | Msa0704000:intron | 50.0% | |
| AATCTGCTGCCCCTAGGTTA+TGG | - | chr4_4:76062633-76062652 | None:intergenic | 50.0% | |
| ACGTAAAATCTGCTGCCCCT+AGG | - | chr4_4:76062639-76062658 | None:intergenic | 50.0% | |
| CATAGTTGCTCCTGGGTTCT+AGG | + | chr4_4:76062686-76062705 | Msa0704000:intron | 50.0% | |
| AGCAGCTATAGTGGCGCAAT+AGG | - | chr4_4:76062807-76062826 | None:intergenic | 50.0% | |
| !! | TGAGGGTACCTTAGGTAACC+AGG | + | chr4_4:76063004-76063023 | Msa0704000:intron | 50.0% |
| ATGTTCCGCCTGGTTACCTA+AGG | - | chr4_4:76063015-76063034 | None:intergenic | 50.0% | |
| TACATAAGCTCGGTTCCCAC+TGG | - | chr4_4:76063944-76063963 | None:intergenic | 50.0% | |
| GGAACCGAGCTTATGTAGTG+AGG | + | chr4_4:76063947-76063966 | Msa0704000:three_prime_UTR | 50.0% | |
| ! | GGTGTTGGGGTGAATTGACG+AGG | - | chr4_4:76061017-76061036 | None:intergenic | 55.0% |
| GGCTCTTGAACCCATTCCAC+TGG | - | chr4_4:76061152-76061171 | None:intergenic | 55.0% | |
| GGGTACCTTAGGTAACCAGG+CGG | + | chr4_4:76063007-76063026 | Msa0704000:intron | 55.0% | |
| TAACCAGGCGGAACATGCAC+TGG | + | chr4_4:76063019-76063038 | Msa0704000:CDS | 55.0% | |
| ! | GGAACATGCACTGGCATCTC+TGG | + | chr4_4:76063028-76063047 | Msa0704000:CDS | 55.0% |
| TGAGCAGAAACACGCCCTGC+AGG | - | chr4_4:76062039-76062058 | None:intergenic | 60.0% | |
| TGTCGCCAGGAGTTCAGCCA+TGG | + | chr4_4:76062951-76062970 | Msa0704000:intron | 60.0% | |
| CCACTCCATGGCTGAACTCC+TGG | - | chr4_4:76062959-76062978 | None:intergenic | 60.0% | |
| CCAGGAGTTCAGCCATGGAG+TGG | + | chr4_4:76062956-76062975 | Msa0704000:intron | 60.0% | |
| ATGCCAGTGCATGTTCCGCC+TGG | - | chr4_4:76063025-76063044 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 76060917 | 76064469 | 76060917 | ID=Msa0704000;Name=Msa0704000 |
| chr4_4 | mRNA | 76060917 | 76064469 | 76060917 | ID=Msa0704000-mRNA-1;Parent=Msa0704000;Name=Msa0704000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=52|0.66|0.71|1|0.66|0.71|7|699|201 |
| chr4_4 | exon | 76060917 | 76061062 | 76060917 | ID=Msa0704000-mRNA-1:exon:23963;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76061145 | 76061247 | 76061145 | ID=Msa0704000-mRNA-1:exon:23964;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76062026 | 76062182 | 76062026 | ID=Msa0704000-mRNA-1:exon:23965;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76062293 | 76062361 | 76062293 | ID=Msa0704000-mRNA-1:exon:23966;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76063008 | 76063098 | 76063008 | ID=Msa0704000-mRNA-1:exon:23967;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76063283 | 76063481 | 76063283 | ID=Msa0704000-mRNA-1:exon:23968;Parent=Msa0704000-mRNA-1 |
| chr4_4 | exon | 76063878 | 76064469 | 76063878 | ID=Msa0704000-mRNA-1:exon:23969;Parent=Msa0704000-mRNA-1 |
| chr4_4 | five_prime_UTR | 76060917 | 76060968 | 76060917 | ID=Msa0704000-mRNA-1:five_prime_utr;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76060969 | 76061062 | 76060969 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76061145 | 76061247 | 76061145 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76062026 | 76062182 | 76062026 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76062293 | 76062361 | 76062293 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76063008 | 76063098 | 76063008 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | CDS | 76063283 | 76063374 | 76063283 | ID=Msa0704000-mRNA-1:cds;Parent=Msa0704000-mRNA-1 |
| chr4_4 | three_prime_UTR | 76063375 | 76063481 | 76063375 | ID=Msa0704000-mRNA-1:three_prime_utr;Parent=Msa0704000-mRNA-1 |
| chr4_4 | three_prime_UTR | 76063878 | 76064469 | 76063878 | ID=Msa0704000-mRNA-1:three_prime_utr;Parent=Msa0704000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
