AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439120 MtrunA17_Chr7g0215351 69.006 171 8 1 11 136 11 181 1.99e-79 232
Msa0439120 MtrunA17_Chr7g0215381 68.421 171 9 1 11 136 11 181 3.30e-79 231
Msa0439120 MtrunA17_Chr7g0215421 69.006 171 8 1 11 136 11 181 4.84e-79 231
Msa0439120 MtrunA17_Chr7g0215361 68.824 170 8 1 12 136 12 181 9.55e-79 230
Msa0439120 MtrunA17_Chr7g0215431 68.235 170 9 1 12 136 12 181 6.64e-78 228
Msa0439120 MtrunA17_Chr6g0457471 61.453 179 23 2 4 136 2 180 5.63e-72 213
Msa0439120 MtrunA17_Chr6g0457461 60.335 179 22 3 4 136 2 177 1.43e-68 204
Msa0439120 MtrunA17_Chr4g0072241 48.649 74 38 0 62 135 96 169 1.05e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439120 AT5G38410.1 51.648 182 38 3 1 136 1 178 1.37e-56 174
Msa0439120 AT5G38410.3 50.267 187 38 3 1 136 1 183 1.01e-55 172
Msa0439120 AT5G38430.1 50.549 182 40 3 1 136 1 178 6.83e-55 170
Msa0439120 AT5G38430.2 50.549 182 40 3 1 136 1 178 6.83e-55 170
Msa0439120 AT1G67090.1 50.549 182 40 3 1 136 1 178 8.80e-55 170
Msa0439120 AT5G38420.1 50.549 182 40 3 1 136 1 178 1.09e-54 169
Msa0439120 AT5G38410.2 51.429 175 42 4 1 136 1 171 6.88e-53 165
Msa0439120 AT1G67090.2 44.538 119 46 7 1 118 1 100 1.04e-15 69.3

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATAAGACCATAATAT+TGG 0.289906 3_3:+4644974 Msa0439120:five_prime_UTR
GGCGCGGTGGCTCCATTTGT+TGG 0.318301 3_3:+4645170 Msa0439120:CDS
TCTTTGTTGACCTTTGTAAC+TGG 0.323260 3_3:-4645215 None:intergenic
AAGACCATAATATTGGAAAT+AGG 0.332452 3_3:+4644981 Msa0439120:five_prime_UTR
CATATTCACAACCAACAAAA+TGG 0.334950 3_3:+4644932 None:intergenic
GATACTATGACGGACGTTAC+TGG 0.345500 3_3:+4645874 Msa0439120:CDS
CTTTACTAGTGAACTAAGTA+AGG 0.376005 3_3:+4645071 Msa0439120:five_prime_UTR
ATGTGGAATTTGCCTTTGTT+TGG 0.407708 3_3:+4645900 Msa0439120:CDS
TGATGCTTCTCAAGTGTTGA+AGG 0.410018 3_3:+4645929 Msa0439120:CDS
GAAATTACAAACAGAACAAA+TGG 0.425519 3_3:-4646113 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 3_3:+4645139 Msa0439120:CDS
AATTTACTGTTTGCCATTGA+AGG 0.435829 3_3:+4646075 Msa0439120:three_prime_UTR
ATGATACGGACAAAGGCATC+AGG 0.443523 3_3:-4645978 None:intergenic
GATGCCTTTGTCCGTATCAT+CGG 0.484184 3_3:+4645981 Msa0439120:CDS
CGTGCCTCTTCGGTACAATC+TGG 0.487772 3_3:+4645149 Msa0439120:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.513160 3_3:+4645188 Msa0439120:CDS
CTTTGTTGACCTTTGTAACT+GGG 0.514716 3_3:-4645214 None:intergenic
TCTCAAATTTAGTAGACTGC+AGG 0.515110 3_3:-4646053 None:intergenic
CGTGAGAACCACAGTTCACC+AGG 0.516570 3_3:+4645852 Msa0439120:CDS
ATGGACTTTAGTCCAACAAA+TGG 0.519141 3_3:-4645182 None:intergenic
TATTATGGTCTTATAAATTG+TGG 0.521418 3_3:-4644970 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.537419 3_3:-4645246 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 3_3:-4645870 None:intergenic
ACTTCCATTGCAAGCAATGG+TGG 0.573273 3_3:+4645242 Msa0439120:CDS
CGTTGTCGAATCCGATGATA+CGG 0.577082 3_3:-4645992 None:intergenic
TTTACTAGTGAACTAAGTAA+GGG 0.581770 3_3:+4645072 Msa0439120:five_prime_UTR
ATTACTTCCATTGCAAGCAA+TGG 0.582522 3_3:+4645239 Msa0439120:CDS
CTGGTGAACTGTGGTTCTCA+CGG 0.583102 3_3:-4645851 None:intergenic
ATTTGTTGGACTAAAGTCCA+TGG 0.586371 3_3:+4645184 Msa0439120:CDS
CGCGCCAGATTGTACCGAAG+AGG 0.592678 3_3:-4645153 None:intergenic
GGCTGGCTTCCCAGTTACAA+AGG 0.593536 3_3:+4645205 Msa0439120:CDS
AACTGTAGTCACAGCTGAAG+AGG 0.597051 3_3:-4645123 None:intergenic
GCATCAGTTGCTCCAAACAA+AGG 0.598394 3_3:-4645912 None:intergenic
TTCGGTACAATCTGGCGCGG+TGG 0.607482 3_3:+4645157 Msa0439120:CDS
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 3_3:-4645201 None:intergenic
AGCTGAAGAGGACATCATAG+AGG 0.638411 3_3:-4645111 None:intergenic
CATAGTATCCTGGTGAACTG+TGG 0.641120 3_3:-4645860 None:intergenic
CTCTTCGGTACAATCTGGCG+CGG 0.651184 3_3:+4645154 Msa0439120:CDS
CAGATTGTACCGAAGAGGCA+CGG 0.652303 3_3:-4645148 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 3_3:+4645262 Msa0439120:CDS
TGATACGGACAAAGGCATCA+GGG 0.656050 3_3:-4645977 None:intergenic
AGTTCACCAGGATACTATGA+CGG 0.676016 3_3:+4645864 Msa0439120:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 3_3:-4645985 None:intergenic
ACGGACGTTACTGGACAATG+TGG 0.688198 3_3:+4645883 Msa0439120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAGACCATAATAT+TGG + chr3_3:4644974-4644993 Msa0439120:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr3_3:4645553-4645572 Msa0439120:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr3_3:4646129-4646148 Msa0439120:intron 15.0%
!!! ATATTTCCTTTAAAAAGAAA+AGG - chr3_3:4646138-4646157 None:intergenic 15.0%
!! AATTTATAAGACCATAATAT+TGG + chr3_3:4644974-4644993 Msa0439120:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr3_3:4645553-4645572 Msa0439120:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr3_3:4646129-4646148 Msa0439120:intron 15.0%
!!! ATATTTCCTTTAAAAAGAAA+AGG - chr3_3:4646138-4646157 None:intergenic 15.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr3_3:4644973-4644992 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr3_3:4644988-4645007 None:intergenic 20.0%
!!! AAATATCTCCATTGTTTTTT+CGG + chr3_3:4646152-4646171 Msa0439120:three_prime_UTR 20.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr3_3:4644973-4644992 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr3_3:4644988-4645007 None:intergenic 20.0%
!!! AAATATCTCCATTGTTTTTT+CGG + chr3_3:4646152-4646171 Msa0439120:three_prime_UTR 20.0%
! AAGACCATAATATTGGAAAT+AGG + chr3_3:4644981-4645000 Msa0439120:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr3_3:4645072-4645091 Msa0439120:five_prime_UTR 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr3_3:4645085-4645104 Msa0439120:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr3_3:4645441-4645460 None:intergenic 25.0%
!! ATGTTACTCTTTAATGCTTT+TGG + chr3_3:4645447-4645466 Msa0439120:intron 25.0%
!! AACGTACATGTTACATATTT+TGG + chr3_3:4645498-4645517 Msa0439120:intron 25.0%
!!! TTACATATTTTGGTACTAGA+AGG + chr3_3:4645508-4645527 Msa0439120:intron 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr3_3:4645558-4645577 Msa0439120:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr3_3:4645651-4645670 Msa0439120:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr3_3:4645708-4645727 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr3_3:4645804-4645823 Msa0439120:intron 25.0%
! AGAAAAAAATGTTCCTTCAA+TGG - chr3_3:4646091-4646110 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr3_3:4646116-4646135 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr3_3:4646187-4646206 Msa0439120:three_prime_UTR 25.0%
! AAGACCATAATATTGGAAAT+AGG + chr3_3:4644981-4645000 Msa0439120:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr3_3:4645072-4645091 Msa0439120:five_prime_UTR 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr3_3:4645085-4645104 Msa0439120:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr3_3:4645441-4645460 None:intergenic 25.0%
!! ATGTTACTCTTTAATGCTTT+TGG + chr3_3:4645447-4645466 Msa0439120:intron 25.0%
!! AACGTACATGTTACATATTT+TGG + chr3_3:4645498-4645517 Msa0439120:intron 25.0%
!!! TTACATATTTTGGTACTAGA+AGG + chr3_3:4645508-4645527 Msa0439120:intron 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr3_3:4645558-4645577 Msa0439120:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr3_3:4645651-4645670 Msa0439120:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr3_3:4645708-4645727 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr3_3:4645804-4645823 Msa0439120:intron 25.0%
! AGAAAAAAATGTTCCTTCAA+TGG - chr3_3:4646091-4646110 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr3_3:4646116-4646135 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr3_3:4646187-4646206 Msa0439120:three_prime_UTR 25.0%
! GCTTCATAATACCATTTTGT+TGG - chr3_3:4644946-4644965 None:intergenic 30.0%
CTTTACTAGTGAACTAAGTA+AGG + chr3_3:4645071-4645090 Msa0439120:five_prime_UTR 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr3_3:4645529-4645548 Msa0439120:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr3_3:4645655-4645674 Msa0439120:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr3_3:4645656-4645675 Msa0439120:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr3_3:4645747-4645766 Msa0439120:intron 30.0%
AATTTACTGTTTGCCATTGA+AGG + chr3_3:4646075-4646094 Msa0439120:three_prime_UTR 30.0%
! GCTTCATAATACCATTTTGT+TGG - chr3_3:4644946-4644965 None:intergenic 30.0%
CTTTACTAGTGAACTAAGTA+AGG + chr3_3:4645071-4645090 Msa0439120:five_prime_UTR 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr3_3:4645529-4645548 Msa0439120:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr3_3:4645655-4645674 Msa0439120:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr3_3:4645656-4645675 Msa0439120:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr3_3:4645747-4645766 Msa0439120:intron 30.0%
AATTTACTGTTTGCCATTGA+AGG + chr3_3:4646075-4646094 Msa0439120:three_prime_UTR 30.0%
ATGGACTTTAGTCCAACAAA+TGG - chr3_3:4645185-4645204 None:intergenic 35.0%
! ATTTGTTGGACTAAAGTCCA+TGG + chr3_3:4645184-4645203 Msa0439120:CDS 35.0%
CTTTGTTGACCTTTGTAACT+GGG - chr3_3:4645217-4645236 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr3_3:4645218-4645237 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr3_3:4645239-4645258 Msa0439120:CDS 35.0%
CATACAAGGTGATATAAAGC+AGG - chr3_3:4645303-4645322 None:intergenic 35.0%
!! ATCACCTTGTATGACTTGTT+TGG + chr3_3:4645310-4645329 Msa0439120:intron 35.0%
CAATCCAAACAAGTCATACA+AGG - chr3_3:4645317-4645336 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4645587-4645606 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr3_3:4645660-4645679 Msa0439120:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr3_3:4645661-4645680 Msa0439120:intron 35.0%
ATGTGGAATTTGCCTTTGTT+TGG + chr3_3:4645900-4645919 Msa0439120:CDS 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr3_3:4646056-4646075 None:intergenic 35.0%
AGCAAAGACCGAAAAAACAA+TGG - chr3_3:4646163-4646182 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr3_3:4646165-4646184 Msa0439120:three_prime_UTR 35.0%
ATGGACTTTAGTCCAACAAA+TGG - chr3_3:4645185-4645204 None:intergenic 35.0%
! ATTTGTTGGACTAAAGTCCA+TGG + chr3_3:4645184-4645203 Msa0439120:CDS 35.0%
CTTTGTTGACCTTTGTAACT+GGG - chr3_3:4645217-4645236 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr3_3:4645218-4645237 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr3_3:4645239-4645258 Msa0439120:CDS 35.0%
CATACAAGGTGATATAAAGC+AGG - chr3_3:4645303-4645322 None:intergenic 35.0%
!! ATCACCTTGTATGACTTGTT+TGG + chr3_3:4645310-4645329 Msa0439120:intron 35.0%
CAATCCAAACAAGTCATACA+AGG - chr3_3:4645317-4645336 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4645587-4645606 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr3_3:4645660-4645679 Msa0439120:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr3_3:4645661-4645680 Msa0439120:intron 35.0%
ATGTGGAATTTGCCTTTGTT+TGG + chr3_3:4645900-4645919 Msa0439120:CDS 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr3_3:4646056-4646075 None:intergenic 35.0%
AGCAAAGACCGAAAAAACAA+TGG - chr3_3:4646163-4646182 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr3_3:4646165-4646184 Msa0439120:three_prime_UTR 35.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4645584-4645603 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4645626-4645645 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4645625-4645644 Msa0439120:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr3_3:4645636-4645655 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4645773-4645792 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr3_3:4645819-4645838 Msa0439120:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr3_3:4645864-4645883 Msa0439120:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr3_3:4645929-4645948 Msa0439120:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4645584-4645603 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4645626-4645645 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4645625-4645644 Msa0439120:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr3_3:4645636-4645655 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4645773-4645792 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr3_3:4645819-4645838 Msa0439120:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr3_3:4645864-4645883 Msa0439120:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr3_3:4645929-4645948 Msa0439120:CDS 40.0%
AGCTGAAGAGGACATCATAG+AGG - chr3_3:4645114-4645133 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr3_3:4645126-4645145 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr3_3:4645139-4645158 Msa0439120:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr3_3:4645242-4645261 Msa0439120:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr3_3:4645249-4645268 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4645262-4645281 Msa0439120:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr3_3:4645569-4645588 Msa0439120:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4645629-4645648 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4645667-4645686 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr3_3:4645863-4645882 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr3_3:4645873-4645892 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr3_3:4645874-4645893 Msa0439120:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr3_3:4645915-4645934 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4645980-4645999 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4645981-4646000 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4645981-4646000 Msa0439120:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4645988-4646007 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4645995-4646014 None:intergenic 45.0%
AGCTGAAGAGGACATCATAG+AGG - chr3_3:4645114-4645133 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr3_3:4645126-4645145 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr3_3:4645139-4645158 Msa0439120:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr3_3:4645242-4645261 Msa0439120:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr3_3:4645249-4645268 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4645262-4645281 Msa0439120:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr3_3:4645569-4645588 Msa0439120:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4645629-4645648 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4645667-4645686 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr3_3:4645863-4645882 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr3_3:4645873-4645892 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr3_3:4645874-4645893 Msa0439120:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr3_3:4645915-4645934 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4645980-4645999 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4645981-4646000 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4645981-4646000 Msa0439120:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4645988-4646007 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4645995-4646014 None:intergenic 45.0%
CAGATTGTACCGAAGAGGCA+CGG - chr3_3:4645151-4645170 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr3_3:4645188-4645207 Msa0439120:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4645622-4645641 None:intergenic 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr3_3:4645694-4645713 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr3_3:4645753-4645772 Msa0439120:intron 50.0%
CTGGTGAACTGTGGTTCTCA+CGG - chr3_3:4645854-4645873 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr3_3:4645883-4645902 Msa0439120:CDS 50.0%
CAGATTGTACCGAAGAGGCA+CGG - chr3_3:4645151-4645170 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr3_3:4645188-4645207 Msa0439120:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4645622-4645641 None:intergenic 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr3_3:4645694-4645713 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr3_3:4645753-4645772 Msa0439120:intron 50.0%
CTGGTGAACTGTGGTTCTCA+CGG - chr3_3:4645854-4645873 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr3_3:4645883-4645902 Msa0439120:CDS 50.0%
CGTGCCTCTTCGGTACAATC+TGG + chr3_3:4645149-4645168 Msa0439120:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr3_3:4645154-4645173 Msa0439120:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr3_3:4645204-4645223 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr3_3:4645205-4645224 Msa0439120:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr3_3:4645690-4645709 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr3_3:4645688-4645707 Msa0439120:intron 55.0%
CGTGAGAACCACAGTTCACC+AGG + chr3_3:4645852-4645871 Msa0439120:CDS 55.0%
CGTGCCTCTTCGGTACAATC+TGG + chr3_3:4645149-4645168 Msa0439120:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr3_3:4645154-4645173 Msa0439120:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr3_3:4645204-4645223 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr3_3:4645205-4645224 Msa0439120:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr3_3:4645690-4645709 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr3_3:4645688-4645707 Msa0439120:intron 55.0%
CGTGAGAACCACAGTTCACC+AGG + chr3_3:4645852-4645871 Msa0439120:CDS 55.0%
CGCGCCAGATTGTACCGAAG+AGG - chr3_3:4645156-4645175 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr3_3:4645157-4645176 Msa0439120:CDS 60.0%
CGCGCCAGATTGTACCGAAG+AGG - chr3_3:4645156-4645175 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr3_3:4645157-4645176 Msa0439120:CDS 60.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr3_3:4645170-4645189 Msa0439120:CDS 65.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr3_3:4645673-4645692 Msa0439120:intron 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr3_3:4645170-4645189 Msa0439120:CDS 65.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr3_3:4645673-4645692 Msa0439120:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 4644940 4646257 4644940 ID=Msa0439120;Name=Msa0439120
chr3_3 mRNA 4644940 4646257 4644940 ID=Msa0439120-mRNA-1;Parent=Msa0439120;Name=Msa0439120-mRNA-1;_AED=0.42;_eAED=0.42;_QI=164|0.5|1|1|0.5|0.33|3|163|136
chr3_3 exon 4644940 4645283 4644940 ID=Msa0439120-mRNA-1:exon:997;Parent=Msa0439120-mRNA-1
chr3_3 exon 4645837 4646123 4645837 ID=Msa0439120-mRNA-1:exon:998;Parent=Msa0439120-mRNA-1
chr3_3 exon 4646151 4646257 4646151 ID=Msa0439120-mRNA-1:exon:999;Parent=Msa0439120-mRNA-1
chr3_3 five_prime_UTR 4644940 4645103 4644940 ID=Msa0439120-mRNA-1:five_prime_utr;Parent=Msa0439120-mRNA-1
chr3_3 CDS 4645104 4645283 4645104 ID=Msa0439120-mRNA-1:cds;Parent=Msa0439120-mRNA-1
chr3_3 CDS 4645837 4646067 4645837 ID=Msa0439120-mRNA-1:cds;Parent=Msa0439120-mRNA-1
chr3_3 three_prime_UTR 4646068 4646123 4646068 ID=Msa0439120-mRNA-1:three_prime_utr;Parent=Msa0439120-mRNA-1
chr3_3 three_prime_UTR 4646151 4646257 4646151 ID=Msa0439120-mRNA-1:three_prime_utr;Parent=Msa0439120-mRNA-1
Gene Sequence

>Msa0439120

ATGGCTTCCTCTATGATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCTGGCGCGGTGGCTCCATTTGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGGTCAACAAAGACATTACTTCCATTGCAAGCAATGGTGGAAGAGTAAACTGCATGCAGAAAGGATTTGTGTACCGTGAGAACCACAGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAATTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCATCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa0439120

MASSMMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSIASNGGRVNCMQKGFVYRENHSSPGYYDGRYWTMWNLPLFGATDASQVLKELDEAIAAYPDAFVRIIGFDNVHQVQCISFIAHTPAVY*