Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567680 | XP_013447005.1 | 85.000 | 180 | 15 | 2 | 9 | 176 | 118 | 297 | 8.71e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567680 | A0A072TUC9 | 85.000 | 180 | 15 | 2 | 9 | 176 | 118 | 297 | 4.16e-102 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203330 | Msa0567680 | 0.801350 | 9.384031e-49 | -8.615850e-47 |
| Msa0224980 | Msa0567680 | 0.803717 | 3.050965e-49 | -8.615850e-47 |
| Msa0225030 | Msa0567680 | 0.808555 | 2.924485e-50 | -8.615850e-47 |
| Msa0365350 | Msa0567680 | 0.817447 | 3.282827e-52 | -8.615850e-47 |
| Msa0249670 | Msa0567680 | 0.813540 | 2.430463e-51 | -8.615850e-47 |
| Msa0504640 | Msa0567680 | 0.803659 | 3.136414e-49 | -8.615850e-47 |
| Msa0508770 | Msa0567680 | 0.821031 | 5.012401e-53 | -8.615850e-47 |
| Msa0565930 | Msa0567680 | 0.821746 | 3.427206e-53 | -8.615850e-47 |
| Msa0567420 | Msa0567680 | 0.805514 | 1.286729e-49 | -8.615850e-47 |
| Msa0567680 | Msa0567700 | 0.996183 | 2.186083e-224 | -8.615850e-47 |
| Msa0567680 | Msa0567720 | 0.874142 | 8.510338e-68 | -8.615850e-47 |
| Msa0567680 | Msa0567970 | 0.886138 | 4.438978e-72 | -8.615850e-47 |
| Msa0567680 | Msa0568810 | 0.830378 | 3.037010e-55 | -8.615850e-47 |
| Msa0567680 | Msa0569540 | 0.806874 | 6.655900e-50 | -8.615850e-47 |
| Msa0567680 | Msa0598680 | 0.831385 | 1.720322e-55 | -8.615850e-47 |
| Msa0567680 | Msa0626900 | 0.801977 | 6.979851e-49 | -8.615850e-47 |
| Msa0567680 | Msa0663580 | 0.802639 | 5.099733e-49 | -8.615850e-47 |
| Msa0567680 | Msa0704000 | 0.844027 | 9.749833e-59 | -8.615850e-47 |
| Msa0567680 | Msa0704040 | 0.812958 | 3.262033e-51 | -8.615850e-47 |
| Msa0567680 | Msa0761930 | 0.804027 | 2.629995e-49 | -8.615850e-47 |
| Msa0567680 | Msa0880370 | 0.815368 | 9.579965e-52 | -8.615850e-47 |
| Msa0567680 | Msa0978440 | 0.825747 | 3.961053e-54 | -8.615850e-47 |
| Msa0567680 | Msa1015020 | 0.802249 | 6.136339e-49 | -8.615850e-47 |
| Msa0567680 | Msa1029010 | 0.802951 | 4.395665e-49 | -8.615850e-47 |
| Msa0567680 | Msa1040030 | 0.809880 | 1.520121e-50 | -8.615850e-47 |
| Msa0567680 | Msa1112230 | 0.810173 | 1.314892e-50 | -8.615850e-47 |
| Msa0567680 | Msa1134830 | 0.800280 | 1.551972e-48 | -8.615850e-47 |
| Msa0567680 | Msa1158540 | 0.805559 | 1.259370e-49 | -8.615850e-47 |
| Msa0567680 | Msa1223600 | 0.818905 | 1.535998e-52 | -8.615850e-47 |
| Msa0567680 | Msa1229880 | 0.844037 | 9.685444e-59 | -8.615850e-47 |
| Msa0567680 | Msa1252220 | 0.804664 | 1.937993e-49 | -8.615850e-47 |
| Msa0567680 | Msa1267800 | 0.817158 | 3.813187e-52 | -8.615850e-47 |
| Msa0567680 | Msa1269370 | 0.802801 | 4.721148e-49 | -8.615850e-47 |
| Msa0567680 | Msa1310620 | 0.837640 | 4.613456e-57 | -8.615850e-47 |
| Msa0567680 | Msa1350350 | 0.803316 | 3.695533e-49 | -8.615850e-47 |
| Msa0567680 | Msa1368800 | 0.825213 | 5.298918e-54 | -8.615850e-47 |
| Msa0567680 | Msa1374610 | 0.807727 | 4.388891e-50 | -8.615850e-47 |
| Msa0567680 | Msa1449510 | 0.811077 | 8.385904e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567680 | MtrunA17_Chr8g0386421 | 85.000 | 180 | 15 | 2 | 9 | 176 | 118 | 297 | 8.01e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567680 | AT2G32500.2 | 51.111 | 180 | 76 | 2 | 9 | 176 | 97 | 276 | 2.03e-58 | 184 |
| Msa0567680 | AT2G32500.1 | 51.282 | 117 | 54 | 1 | 9 | 122 | 97 | 213 | 2.75e-35 | 123 |
Find 46 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATCTGTTTATTGTTTC+GGG | 0.115077 | 4_1:-69001224 | Msa0567680:three_prime_UTR |
| CTGCTATCTGTTTATTGTTT+CGG | 0.203560 | 4_1:-69001225 | Msa0567680:three_prime_UTR |
| TTTCCACTCACATGTTCTTT+TGG | 0.254274 | 4_1:-69001364 | Msa0567680:three_prime_UTR |
| CTTGAGAACCTTCAAGTAAA+AGG | 0.266883 | 4_1:+69003347 | None:intergenic |
| AATGAAGAGATAGTGATTTC+AGG | 0.286116 | 4_1:+69001585 | None:intergenic |
| GGAACATGCACTGGCATCTC+TGG | 0.334936 | 4_1:-69002464 | Msa0567680:CDS |
| TCAGATATAAACCGTGAGAT+TGG | 0.359114 | 4_1:+69002140 | None:intergenic |
| GAATTTCAACGAAAGTTCTA+AGG | 0.371566 | 4_1:-69002205 | Msa0567680:CDS |
| GATAGTGATTTCAGGACAAT+AGG | 0.387522 | 4_1:+69001593 | None:intergenic |
| TTCTTAAAGCTCAATGTGTC+TGG | 0.392150 | 4_1:-69001250 | Msa0567680:three_prime_UTR |
| TCTAGCTTATGTGCTCCTGC+AGG | 0.440665 | 4_1:-69003462 | Msa0567680:CDS |
| TCATTTAATGAGGGTACCTT+AGG | 0.442429 | 4_1:-69002496 | Msa0567680:CDS |
| ATATTAAAAGTGTACCTTGA+AGG | 0.446290 | 4_1:+69001172 | None:intergenic |
| CATTTCTCTGTTGATCCAGT+GGG | 0.450126 | 4_1:-69001566 | Msa0567680:CDS |
| CAGATATAAACCGTGAGATT+GGG | 0.460477 | 4_1:+69002141 | None:intergenic |
| TCATTTCTCTGTTGATCCAG+TGG | 0.484155 | 4_1:-69001567 | Msa0567680:CDS |
| TGTAAACAACATAAGTATAG+TGG | 0.496712 | 4_1:+69003415 | None:intergenic |
| TTGTGTAAATTGTACTATCA+AGG | 0.504240 | 4_1:+69002417 | None:intergenic |
| GCAATTGAGTTTCAGAATGT+TGG | 0.505112 | 4_1:+69001312 | None:intergenic |
| ACAACATAAGTATAGTGGTC+AGG | 0.505672 | 4_1:+69003420 | None:intergenic |
| ATGTCAAAATCAAACCTTCA+AGG | 0.507168 | 4_1:-69001186 | Msa0567680:three_prime_UTR |
| TGAGCAGAAACACGCCCTGC+AGG | 0.514909 | 4_1:+69003447 | None:intergenic |
| TACATAAGCTCGGTTCCCAC+TGG | 0.518561 | 4_1:+69001551 | None:intergenic |
| TAACCAGGCGGAACATGCAC+TGG | 0.530562 | 4_1:-69002473 | Msa0567680:CDS |
| GTGATTTCAGGACAATAGGC+TGG | 0.532975 | 4_1:+69001597 | None:intergenic |
| ATGCCAGTGCATGTTCCGCC+TGG | 0.536544 | 4_1:+69002470 | None:intergenic |
| ATGTGAGTGGAAATAGAAGC+AGG | 0.552159 | 4_1:+69001374 | None:intergenic |
| AGTTCTAAGGAGTATACTCA+TGG | 0.556075 | 4_1:-69002192 | Msa0567680:CDS |
| ATCTCTGGCAACAGTGATGT+TGG | 0.558570 | 4_1:-69002449 | Msa0567680:CDS |
| CTAGCTTATGTGCTCCTGCA+GGG | 0.560601 | 4_1:-69003461 | Msa0567680:CDS |
| ATACTTATGTTGTTTACATG+CGG | 0.565208 | 4_1:-69003410 | Msa0567680:CDS |
| GTAGTGATACGATTTCGATC+AGG | 0.566672 | 4_1:-69002168 | Msa0567680:CDS |
| CGAAACAATAAACAGATAGC+AGG | 0.568699 | 4_1:+69001226 | None:intergenic |
| GTTTCAGGGATTAATTAATG+TGG | 0.569081 | 4_1:-69003197 | Msa0567680:intron |
| ATGTTCCGCCTGGTTACCTA+AGG | 0.573483 | 4_1:+69002480 | None:intergenic |
| ATCAGGTGATCCCAATCTCA+CGG | 0.579743 | 4_1:-69002151 | Msa0567680:intron |
| ATGATTTATATATTTCGCAA+AGG | 0.580470 | 4_1:-69003148 | Msa0567680:CDS |
| TGAGGGTACCTTAGGTAACC+AGG | 0.595164 | 4_1:-69002488 | Msa0567680:CDS |
| GTAAATTGTACTATCAAGGA+AGG | 0.603275 | 4_1:+69002421 | None:intergenic |
| TTATCCTCACTACATAAGCT+CGG | 0.606028 | 4_1:+69001541 | None:intergenic |
| TTCTGAAACTCAATTGCCAT+AGG | 0.613416 | 4_1:-69001306 | Msa0567680:three_prime_UTR |
| TTATATATTTCGCAAAGGAG+AGG | 0.620757 | 4_1:-69003143 | Msa0567680:intron |
| TAGCCAAAAGAACATGTGAG+TGG | 0.632547 | 4_1:+69001361 | None:intergenic |
| GGAACCGAGCTTATGTAGTG+AGG | 0.674016 | 4_1:-69001545 | Msa0567680:exon |
| TTGATAGTACAATTTACACA+AGG | 0.690159 | 4_1:-69002415 | Msa0567680:intron |
| GGGTACCTTAGGTAACCAGG+CGG | 0.811298 | 4_1:-69002485 | Msa0567680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCAGTTTTTTTTTTTTA+AGG | + | chr4_1:69002920-69002939 | None:intergenic | 10.0% |
| !! | AATATAAACTAAACTATATT+TGG | - | chr4_1:69002983-69003002 | Msa0567680:intron | 10.0% |
| !!! | ATTTCAGTTTTTTTTTTTTA+AGG | + | chr4_1:69002920-69002939 | None:intergenic | 10.0% |
| !! | AATATAAACTAAACTATATT+TGG | - | chr4_1:69002983-69003002 | Msa0567680:intron | 10.0% |
| !! | TTTCTCATTAAATGAAATTA+AGG | + | chr4_1:69001719-69001738 | None:intergenic | 15.0% |
| !! | GTTATTAATATTTAATTGTC+AGG | - | chr4_1:69002402-69002421 | Msa0567680:intron | 15.0% |
| !!! | TAAAACATTATTTTATGCTT+AGG | - | chr4_1:69002650-69002669 | Msa0567680:intron | 15.0% |
| !! | AAAAATTTCTCAAGTAAAAA+TGG | + | chr4_1:69002798-69002817 | None:intergenic | 15.0% |
| !! | TTTCTCATTAAATGAAATTA+AGG | + | chr4_1:69001719-69001738 | None:intergenic | 15.0% |
| !! | GTTATTAATATTTAATTGTC+AGG | - | chr4_1:69002402-69002421 | Msa0567680:intron | 15.0% |
| !!! | TAAAACATTATTTTATGCTT+AGG | - | chr4_1:69002650-69002669 | Msa0567680:intron | 15.0% |
| !! | AAAAATTTCTCAAGTAAAAA+TGG | + | chr4_1:69002798-69002817 | None:intergenic | 15.0% |
| !! | TAAGAGTAACAGAAAAATAA+AGG | + | chr4_1:69001370-69001389 | None:intergenic | 20.0% |
| !! | ATGATTTATATATTTCGCAA+AGG | - | chr4_1:69001485-69001504 | Msa0567680:intron | 20.0% |
| !!! | TCTTTTGATATCATTTAATG+AGG | - | chr4_1:69002127-69002146 | Msa0567680:intron | 20.0% |
| !!! | CTTTTGATATCATTTAATGA+GGG | - | chr4_1:69002128-69002147 | Msa0567680:intron | 20.0% |
| !! | TAAAAGATCTAATTACACAA+CGG | + | chr4_1:69002292-69002311 | None:intergenic | 20.0% |
| !!! | TGTAATTAGATCTTTTAACA+TGG | - | chr4_1:69002295-69002314 | Msa0567680:intron | 20.0% |
| !! | TGTAAAATGTATTTATCTAC+AGG | + | chr4_1:69002880-69002899 | None:intergenic | 20.0% |
| !! | AACTAAACTATATTTGGATT+TGG | - | chr4_1:69002989-69003008 | Msa0567680:intron | 20.0% |
| !! | TAAGAGTAACAGAAAAATAA+AGG | + | chr4_1:69001370-69001389 | None:intergenic | 20.0% |
| !! | ATGATTTATATATTTCGCAA+AGG | - | chr4_1:69001485-69001504 | Msa0567680:intron | 20.0% |
| !!! | TCTTTTGATATCATTTAATG+AGG | - | chr4_1:69002127-69002146 | Msa0567680:intron | 20.0% |
| !!! | CTTTTGATATCATTTAATGA+GGG | - | chr4_1:69002128-69002147 | Msa0567680:intron | 20.0% |
| !! | TAAAAGATCTAATTACACAA+CGG | + | chr4_1:69002292-69002311 | None:intergenic | 20.0% |
| !!! | TGTAATTAGATCTTTTAACA+TGG | - | chr4_1:69002295-69002314 | Msa0567680:intron | 20.0% |
| !! | TGTAAAATGTATTTATCTAC+AGG | + | chr4_1:69002880-69002899 | None:intergenic | 20.0% |
| !! | AACTAAACTATATTTGGATT+TGG | - | chr4_1:69002989-69003008 | Msa0567680:intron | 20.0% |
| ! | TGTAAACAACATAAGTATAG+TGG | + | chr4_1:69001221-69001240 | None:intergenic | 25.0% |
| !! | ATACTTATGTTGTTTACATG+CGG | - | chr4_1:69001223-69001242 | Msa0567680:three_prime_UTR | 25.0% |
| !! | AGTTTTCATAGAACTTTTCA+AGG | + | chr4_1:69001266-69001285 | None:intergenic | 25.0% |
| ! | AAAATAAAGGAAAAGAGAGT+CGG | + | chr4_1:69001357-69001376 | None:intergenic | 25.0% |
| ! | CTCATTAAATGAAATTAAGG+TGG | + | chr4_1:69001716-69001735 | None:intergenic | 25.0% |
| !! | AAAGTAGTGTTGTTAAATAG+CGG | + | chr4_1:69002071-69002090 | None:intergenic | 25.0% |
| ! | TTGTGTAAATTGTACTATCA+AGG | + | chr4_1:69002219-69002238 | None:intergenic | 25.0% |
| !! | TTGATAGTACAATTTACACA+AGG | - | chr4_1:69002218-69002237 | Msa0567680:intron | 25.0% |
| ! | AGTAGAAAATCAAAACATAC+TGG | + | chr4_1:69002379-69002398 | None:intergenic | 25.0% |
| ! | TCCTTACATCTTTATATTCT+TGG | + | chr4_1:69002608-69002627 | None:intergenic | 25.0% |
| ! | ATCCTGAGTTATATAGTTTA+CGG | + | chr4_1:69002705-69002724 | None:intergenic | 25.0% |
| ! | TATAACTCAGGATATTTGTT+TGG | - | chr4_1:69002712-69002731 | Msa0567680:intron | 25.0% |
| ! | ATAACTCAGGATATTTGTTT+GGG | - | chr4_1:69002713-69002732 | Msa0567680:intron | 25.0% |
| !! | TATATTTGGATTTGGTAAAC+AGG | - | chr4_1:69002997-69003016 | Msa0567680:intron | 25.0% |
| !! | ATATTAAAAGTGTACCTTGA+AGG | + | chr4_1:69003464-69003483 | None:intergenic | 25.0% |
| ! | TGTAAACAACATAAGTATAG+TGG | + | chr4_1:69001221-69001240 | None:intergenic | 25.0% |
| !! | ATACTTATGTTGTTTACATG+CGG | - | chr4_1:69001223-69001242 | Msa0567680:three_prime_UTR | 25.0% |
| !! | AGTTTTCATAGAACTTTTCA+AGG | + | chr4_1:69001266-69001285 | None:intergenic | 25.0% |
| ! | AAAATAAAGGAAAAGAGAGT+CGG | + | chr4_1:69001357-69001376 | None:intergenic | 25.0% |
| ! | CTCATTAAATGAAATTAAGG+TGG | + | chr4_1:69001716-69001735 | None:intergenic | 25.0% |
| !! | AAAGTAGTGTTGTTAAATAG+CGG | + | chr4_1:69002071-69002090 | None:intergenic | 25.0% |
| ! | TTGTGTAAATTGTACTATCA+AGG | + | chr4_1:69002219-69002238 | None:intergenic | 25.0% |
| !! | TTGATAGTACAATTTACACA+AGG | - | chr4_1:69002218-69002237 | Msa0567680:intron | 25.0% |
| ! | AGTAGAAAATCAAAACATAC+TGG | + | chr4_1:69002379-69002398 | None:intergenic | 25.0% |
| ! | TCCTTACATCTTTATATTCT+TGG | + | chr4_1:69002608-69002627 | None:intergenic | 25.0% |
| ! | ATCCTGAGTTATATAGTTTA+CGG | + | chr4_1:69002705-69002724 | None:intergenic | 25.0% |
| ! | TATAACTCAGGATATTTGTT+TGG | - | chr4_1:69002712-69002731 | Msa0567680:intron | 25.0% |
| ! | ATAACTCAGGATATTTGTTT+GGG | - | chr4_1:69002713-69002732 | Msa0567680:intron | 25.0% |
| !! | TATATTTGGATTTGGTAAAC+AGG | - | chr4_1:69002997-69003016 | Msa0567680:intron | 25.0% |
| !! | ATATTAAAAGTGTACCTTGA+AGG | + | chr4_1:69003464-69003483 | None:intergenic | 25.0% |
| ! | TGAAAACTCCTTTTACTTGA+AGG | - | chr4_1:69001278-69001297 | Msa0567680:three_prime_UTR | 30.0% |
| !!! | ACCTTTACTGATTTTGTTTC+AGG | - | chr4_1:69001421-69001440 | Msa0567680:intron | 30.0% |
| !!! | CCTTTACTGATTTTGTTTCA+GGG | - | chr4_1:69001422-69001441 | Msa0567680:intron | 30.0% |
| GTTTCAGGGATTAATTAATG+TGG | - | chr4_1:69001436-69001455 | Msa0567680:intron | 30.0% | |
| TTATATATTTCGCAAAGGAG+AGG | - | chr4_1:69001490-69001509 | Msa0567680:intron | 30.0% | |
| !! | CTGATTTACTTTTCCTCTTA+TGG | - | chr4_1:69001519-69001538 | Msa0567680:intron | 30.0% |
| TCAATTTATCGATCCATAAG+AGG | + | chr4_1:69001535-69001554 | None:intergenic | 30.0% | |
| CAATTCATATTTGACCATAG+AGG | - | chr4_1:69001578-69001597 | Msa0567680:CDS | 30.0% | |
| TTCCTATATACTTCAGTCTT+AGG | - | chr4_1:69001865-69001884 | Msa0567680:intron | 30.0% | |
| ATCCTAAGACTGAAGTATAT+AGG | + | chr4_1:69001870-69001889 | None:intergenic | 30.0% | |
| ! | TTTAAATGAATTTTGTCGCC+AGG | - | chr4_1:69002088-69002107 | Msa0567680:intron | 30.0% |
| GTAAATTGTACTATCAAGGA+AGG | + | chr4_1:69002215-69002234 | None:intergenic | 30.0% | |
| AACATCTGAATAAATGTTGG+TGG | + | chr4_1:69002257-69002276 | None:intergenic | 30.0% | |
| !! | GATCTTTTAACATGGTTTGT+TGG | - | chr4_1:69002303-69002322 | Msa0567680:intron | 30.0% |
| !!! | AACAGTTCATTGTTTTGACA+AGG | - | chr4_1:69002332-69002351 | Msa0567680:intron | 30.0% |
| GAATTTCAACGAAAGTTCTA+AGG | - | chr4_1:69002428-69002447 | Msa0567680:CDS | 30.0% | |
| !!! | GATTTTTTTTCCTCCCAATT+TGG | - | chr4_1:69002514-69002533 | Msa0567680:CDS | 30.0% |
| GCCAAGAATATAAAGATGTA+AGG | - | chr4_1:69002604-69002623 | Msa0567680:intron | 30.0% | |
| TCCTGAGTTATATAGTTTAC+GGG | + | chr4_1:69002704-69002723 | None:intergenic | 30.0% | |
| TAACTCAGGATATTTGTTTG+GGG | - | chr4_1:69002714-69002733 | Msa0567680:intron | 30.0% | |
| AATGAAGAGATAGTGATTTC+AGG | + | chr4_1:69003051-69003070 | None:intergenic | 30.0% | |
| TTTCTACTTGAAATGTGACT+TGG | - | chr4_1:69003196-69003215 | Msa0567680:intron | 30.0% | |
| !! | TTTTAGGAACAAGGAACATA+TGG | - | chr4_1:69003230-69003249 | Msa0567680:intron | 30.0% |
| AAGCAACAAAAACTTTCCTA+TGG | + | chr4_1:69003346-69003365 | None:intergenic | 30.0% | |
| CTGCTATCTGTTTATTGTTT+CGG | - | chr4_1:69003408-69003427 | Msa0567680:CDS | 30.0% | |
| TGCTATCTGTTTATTGTTTC+GGG | - | chr4_1:69003409-69003428 | Msa0567680:CDS | 30.0% | |
| ATGTCAAAATCAAACCTTCA+AGG | - | chr4_1:69003447-69003466 | Msa0567680:CDS | 30.0% | |
| ! | TGAAAACTCCTTTTACTTGA+AGG | - | chr4_1:69001278-69001297 | Msa0567680:three_prime_UTR | 30.0% |
| !!! | ACCTTTACTGATTTTGTTTC+AGG | - | chr4_1:69001421-69001440 | Msa0567680:intron | 30.0% |
| !!! | CCTTTACTGATTTTGTTTCA+GGG | - | chr4_1:69001422-69001441 | Msa0567680:intron | 30.0% |
| GTTTCAGGGATTAATTAATG+TGG | - | chr4_1:69001436-69001455 | Msa0567680:intron | 30.0% | |
| TTATATATTTCGCAAAGGAG+AGG | - | chr4_1:69001490-69001509 | Msa0567680:intron | 30.0% | |
| !! | CTGATTTACTTTTCCTCTTA+TGG | - | chr4_1:69001519-69001538 | Msa0567680:intron | 30.0% |
| TCAATTTATCGATCCATAAG+AGG | + | chr4_1:69001535-69001554 | None:intergenic | 30.0% | |
| CAATTCATATTTGACCATAG+AGG | - | chr4_1:69001578-69001597 | Msa0567680:CDS | 30.0% | |
| TTCCTATATACTTCAGTCTT+AGG | - | chr4_1:69001865-69001884 | Msa0567680:intron | 30.0% | |
| ATCCTAAGACTGAAGTATAT+AGG | + | chr4_1:69001870-69001889 | None:intergenic | 30.0% | |
| ! | TTTAAATGAATTTTGTCGCC+AGG | - | chr4_1:69002088-69002107 | Msa0567680:intron | 30.0% |
| GTAAATTGTACTATCAAGGA+AGG | + | chr4_1:69002215-69002234 | None:intergenic | 30.0% | |
| AACATCTGAATAAATGTTGG+TGG | + | chr4_1:69002257-69002276 | None:intergenic | 30.0% | |
| !! | GATCTTTTAACATGGTTTGT+TGG | - | chr4_1:69002303-69002322 | Msa0567680:intron | 30.0% |
| !!! | AACAGTTCATTGTTTTGACA+AGG | - | chr4_1:69002332-69002351 | Msa0567680:intron | 30.0% |
| GAATTTCAACGAAAGTTCTA+AGG | - | chr4_1:69002428-69002447 | Msa0567680:CDS | 30.0% | |
| !!! | GATTTTTTTTCCTCCCAATT+TGG | - | chr4_1:69002514-69002533 | Msa0567680:CDS | 30.0% |
| GCCAAGAATATAAAGATGTA+AGG | - | chr4_1:69002604-69002623 | Msa0567680:intron | 30.0% | |
| TCCTGAGTTATATAGTTTAC+GGG | + | chr4_1:69002704-69002723 | None:intergenic | 30.0% | |
| TAACTCAGGATATTTGTTTG+GGG | - | chr4_1:69002714-69002733 | Msa0567680:intron | 30.0% | |
| AATGAAGAGATAGTGATTTC+AGG | + | chr4_1:69003051-69003070 | None:intergenic | 30.0% | |
| TTTCTACTTGAAATGTGACT+TGG | - | chr4_1:69003196-69003215 | Msa0567680:intron | 30.0% | |
| !! | TTTTAGGAACAAGGAACATA+TGG | - | chr4_1:69003230-69003249 | Msa0567680:intron | 30.0% |
| AAGCAACAAAAACTTTCCTA+TGG | + | chr4_1:69003346-69003365 | None:intergenic | 30.0% | |
| CTGCTATCTGTTTATTGTTT+CGG | - | chr4_1:69003408-69003427 | Msa0567680:CDS | 30.0% | |
| TGCTATCTGTTTATTGTTTC+GGG | - | chr4_1:69003409-69003428 | Msa0567680:CDS | 30.0% | |
| ATGTCAAAATCAAACCTTCA+AGG | - | chr4_1:69003447-69003466 | Msa0567680:CDS | 30.0% | |
| ACAACATAAGTATAGTGGTC+AGG | + | chr4_1:69001216-69001235 | None:intergenic | 35.0% | |
| CTTGAGAACCTTCAAGTAAA+AGG | + | chr4_1:69001289-69001308 | None:intergenic | 35.0% | |
| ! | CTTTTACTTGAAGGTTCTCA+AGG | - | chr4_1:69001287-69001306 | Msa0567680:three_prime_UTR | 35.0% |
| TTTACATGTTGGTGCATACA+CGG | + | chr4_1:69001332-69001351 | None:intergenic | 35.0% | |
| !! | TCCTTATGAACGTTTTGACA+CGG | - | chr4_1:69001398-69001417 | Msa0567680:three_prime_UTR | 35.0% |
| CCCTGAAACAAAATCAGTAA+AGG | + | chr4_1:69001425-69001444 | None:intergenic | 35.0% | |
| TTAGTACTCACTCTCTTCAT+TGG | - | chr4_1:69001634-69001653 | Msa0567680:intron | 35.0% | |
| TTCATTGGATGAGATCAATG+TGG | - | chr4_1:69001649-69001668 | Msa0567680:intron | 35.0% | |
| GTAATAGATCCCACATTAAG+TGG | + | chr4_1:69001681-69001700 | None:intergenic | 35.0% | |
| TGGGATCTATTACAAAGTGT+GGG | - | chr4_1:69001688-69001707 | Msa0567680:intron | 35.0% | |
| AAAATGAACATAGTTGCTCC+TGG | - | chr4_1:69001828-69001847 | Msa0567680:intron | 35.0% | |
| AAATGAACATAGTTGCTCCT+GGG | - | chr4_1:69001829-69001848 | Msa0567680:intron | 35.0% | |
| TTGACTAATAGCAGCTATAG+TGG | + | chr4_1:69001966-69001985 | None:intergenic | 35.0% | |
| ! | GTGATTTGTACAAATTCCAG+TGG | - | chr4_1:69002019-69002038 | Msa0567680:intron | 35.0% |
| !! | TCATTTAATGAGGGTACCTT+AGG | - | chr4_1:69002137-69002156 | Msa0567680:intron | 35.0% |
| GGCAACATCTGAATAAATGT+TGG | + | chr4_1:69002260-69002279 | None:intergenic | 35.0% | |
| !! | AGTTCTAAGGAGTATACTCA+TGG | - | chr4_1:69002441-69002460 | Msa0567680:CDS | 35.0% |
| CAGATATAAACCGTGAGATT+GGG | + | chr4_1:69002495-69002514 | None:intergenic | 35.0% | |
| TCAGATATAAACCGTGAGAT+TGG | + | chr4_1:69002496-69002515 | None:intergenic | 35.0% | |
| ATGATGTCATACACCAGAAT+GGG | + | chr4_1:69002549-69002568 | None:intergenic | 35.0% | |
| !! | TGCTTAGGTAGCTTGTTAAA+TGG | - | chr4_1:69002665-69002684 | Msa0567680:intron | 35.0% |
| TCCCGTAAACTATATAACTC+AGG | - | chr4_1:69002700-69002719 | Msa0567680:intron | 35.0% | |
| ATCATGCTATCATTTCCTCT+TGG | - | chr4_1:69002737-69002756 | Msa0567680:intron | 35.0% | |
| !! | GAATTGTGTCATTTACCAAG+AGG | + | chr4_1:69002755-69002774 | None:intergenic | 35.0% |
| ! | TTGGATTTGGTAAACAGGTA+TGG | - | chr4_1:69003002-69003021 | Msa0567680:intron | 35.0% |
| GATAGTGATTTCAGGACAAT+AGG | + | chr4_1:69003043-69003062 | None:intergenic | 35.0% | |
| TTATCCTCACTACATAAGCT+CGG | + | chr4_1:69003095-69003114 | None:intergenic | 35.0% | |
| TACTTGCCATATACTTCAAG+TGG | - | chr4_1:69003134-69003153 | Msa0567680:intron | 35.0% | |
| ! | CTTGGTTTCCTCTTCTTTTT+AGG | - | chr4_1:69003214-69003233 | Msa0567680:intron | 35.0% |
| !! | TCCTCTTCTTTTTAGGAACA+AGG | - | chr4_1:69003221-69003240 | Msa0567680:intron | 35.0% |
| TCCTTGTTCCTAAAAAGAAG+AGG | + | chr4_1:69003225-69003244 | None:intergenic | 35.0% | |
| ! | TTTCCACTCACATGTTCTTT+TGG | - | chr4_1:69003269-69003288 | Msa0567680:intron | 35.0% |
| GCAATTGAGTTTCAGAATGT+TGG | + | chr4_1:69003324-69003343 | None:intergenic | 35.0% | |
| !! | TTCTGAAACTCAATTGCCAT+AGG | - | chr4_1:69003327-69003346 | Msa0567680:CDS | 35.0% |
| TTCTTAAAGCTCAATGTGTC+TGG | - | chr4_1:69003383-69003402 | Msa0567680:CDS | 35.0% | |
| CGAAACAATAAACAGATAGC+AGG | + | chr4_1:69003410-69003429 | None:intergenic | 35.0% | |
| ACAACATAAGTATAGTGGTC+AGG | + | chr4_1:69001216-69001235 | None:intergenic | 35.0% | |
| CTTGAGAACCTTCAAGTAAA+AGG | + | chr4_1:69001289-69001308 | None:intergenic | 35.0% | |
| ! | CTTTTACTTGAAGGTTCTCA+AGG | - | chr4_1:69001287-69001306 | Msa0567680:three_prime_UTR | 35.0% |
| TTTACATGTTGGTGCATACA+CGG | + | chr4_1:69001332-69001351 | None:intergenic | 35.0% | |
| !! | TCCTTATGAACGTTTTGACA+CGG | - | chr4_1:69001398-69001417 | Msa0567680:three_prime_UTR | 35.0% |
| CCCTGAAACAAAATCAGTAA+AGG | + | chr4_1:69001425-69001444 | None:intergenic | 35.0% | |
| TTAGTACTCACTCTCTTCAT+TGG | - | chr4_1:69001634-69001653 | Msa0567680:intron | 35.0% | |
| TTCATTGGATGAGATCAATG+TGG | - | chr4_1:69001649-69001668 | Msa0567680:intron | 35.0% | |
| GTAATAGATCCCACATTAAG+TGG | + | chr4_1:69001681-69001700 | None:intergenic | 35.0% | |
| TGGGATCTATTACAAAGTGT+GGG | - | chr4_1:69001688-69001707 | Msa0567680:intron | 35.0% | |
| AAAATGAACATAGTTGCTCC+TGG | - | chr4_1:69001828-69001847 | Msa0567680:intron | 35.0% | |
| AAATGAACATAGTTGCTCCT+GGG | - | chr4_1:69001829-69001848 | Msa0567680:intron | 35.0% | |
| TTGACTAATAGCAGCTATAG+TGG | + | chr4_1:69001966-69001985 | None:intergenic | 35.0% | |
| ! | GTGATTTGTACAAATTCCAG+TGG | - | chr4_1:69002019-69002038 | Msa0567680:intron | 35.0% |
| !! | TCATTTAATGAGGGTACCTT+AGG | - | chr4_1:69002137-69002156 | Msa0567680:intron | 35.0% |
| GGCAACATCTGAATAAATGT+TGG | + | chr4_1:69002260-69002279 | None:intergenic | 35.0% | |
| !! | AGTTCTAAGGAGTATACTCA+TGG | - | chr4_1:69002441-69002460 | Msa0567680:CDS | 35.0% |
| CAGATATAAACCGTGAGATT+GGG | + | chr4_1:69002495-69002514 | None:intergenic | 35.0% | |
| TCAGATATAAACCGTGAGAT+TGG | + | chr4_1:69002496-69002515 | None:intergenic | 35.0% | |
| ATGATGTCATACACCAGAAT+GGG | + | chr4_1:69002549-69002568 | None:intergenic | 35.0% | |
| !! | TGCTTAGGTAGCTTGTTAAA+TGG | - | chr4_1:69002665-69002684 | Msa0567680:intron | 35.0% |
| TCCCGTAAACTATATAACTC+AGG | - | chr4_1:69002700-69002719 | Msa0567680:intron | 35.0% | |
| ATCATGCTATCATTTCCTCT+TGG | - | chr4_1:69002737-69002756 | Msa0567680:intron | 35.0% | |
| !! | GAATTGTGTCATTTACCAAG+AGG | + | chr4_1:69002755-69002774 | None:intergenic | 35.0% |
| ! | TTGGATTTGGTAAACAGGTA+TGG | - | chr4_1:69003002-69003021 | Msa0567680:intron | 35.0% |
| GATAGTGATTTCAGGACAAT+AGG | + | chr4_1:69003043-69003062 | None:intergenic | 35.0% | |
| TTATCCTCACTACATAAGCT+CGG | + | chr4_1:69003095-69003114 | None:intergenic | 35.0% | |
| TACTTGCCATATACTTCAAG+TGG | - | chr4_1:69003134-69003153 | Msa0567680:intron | 35.0% | |
| ! | CTTGGTTTCCTCTTCTTTTT+AGG | - | chr4_1:69003214-69003233 | Msa0567680:intron | 35.0% |
| !! | TCCTCTTCTTTTTAGGAACA+AGG | - | chr4_1:69003221-69003240 | Msa0567680:intron | 35.0% |
| TCCTTGTTCCTAAAAAGAAG+AGG | + | chr4_1:69003225-69003244 | None:intergenic | 35.0% | |
| ! | TTTCCACTCACATGTTCTTT+TGG | - | chr4_1:69003269-69003288 | Msa0567680:intron | 35.0% |
| GCAATTGAGTTTCAGAATGT+TGG | + | chr4_1:69003324-69003343 | None:intergenic | 35.0% | |
| !! | TTCTGAAACTCAATTGCCAT+AGG | - | chr4_1:69003327-69003346 | Msa0567680:CDS | 35.0% |
| TTCTTAAAGCTCAATGTGTC+TGG | - | chr4_1:69003383-69003402 | Msa0567680:CDS | 35.0% | |
| CGAAACAATAAACAGATAGC+AGG | + | chr4_1:69003410-69003429 | None:intergenic | 35.0% | |
| GTGTCAAAACGTTCATAAGG+AGG | + | chr4_1:69001399-69001418 | None:intergenic | 40.0% | |
| TCCGTGTCAAAACGTTCATA+AGG | + | chr4_1:69001402-69001421 | None:intergenic | 40.0% | |
| ! | ATTTTGCTAGCACTCCTCTA+TGG | + | chr4_1:69001595-69001614 | None:intergenic | 40.0% |
| TAGATCCCACATTAAGTGGT+GGG | + | chr4_1:69001677-69001696 | None:intergenic | 40.0% | |
| ATAGATCCCACATTAAGTGG+TGG | + | chr4_1:69001678-69001697 | None:intergenic | 40.0% | |
| GTGGGATCTATTACAAAGTG+TGG | - | chr4_1:69001687-69001706 | Msa0567680:intron | 40.0% | |
| GGGATCTATTACAAAGTGTG+GGG | - | chr4_1:69001689-69001708 | Msa0567680:intron | 40.0% | |
| GGAATAAATACCTAGAACCC+AGG | + | chr4_1:69001849-69001868 | None:intergenic | 40.0% | |
| ACCACTAATCGCTGAAAAAG+TGG | - | chr4_1:69001903-69001922 | Msa0567680:intron | 40.0% | |
| !!! | ACCACTTTTTCAGCGATTAG+TGG | + | chr4_1:69001907-69001926 | None:intergenic | 40.0% |
| TTGTTAAATAGCGGCTACAG+CGG | + | chr4_1:69002062-69002081 | None:intergenic | 40.0% | |
| ! | AATGAATTTTGTCGCCAGGA+TGG | - | chr4_1:69002092-69002111 | Msa0567680:intron | 40.0% |
| ATTACACAACGGCTAACACA+AGG | + | chr4_1:69002281-69002300 | None:intergenic | 40.0% | |
| GTAGTGATACGATTTCGATC+AGG | - | chr4_1:69002465-69002484 | Msa0567680:CDS | 40.0% | |
| !! | TGGGTTAGCACAACCAAATT+GGG | + | chr4_1:69002530-69002549 | None:intergenic | 40.0% |
| !! | ATGGGTTAGCACAACCAAAT+TGG | + | chr4_1:69002531-69002550 | None:intergenic | 40.0% |
| GATGATGTCATACACCAGAA+TGG | + | chr4_1:69002550-69002569 | None:intergenic | 40.0% | |
| TCATTTCTCTGTTGATCCAG+TGG | - | chr4_1:69003066-69003085 | Msa0567680:intron | 40.0% | |
| CATTTCTCTGTTGATCCAGT+GGG | - | chr4_1:69003067-69003086 | Msa0567680:intron | 40.0% | |
| ! | TGTCTGCCACTTGAAGTATA+TGG | + | chr4_1:69003143-69003162 | None:intergenic | 40.0% |
| ATGTGAGTGGAAATAGAAGC+AGG | + | chr4_1:69003262-69003281 | None:intergenic | 40.0% | |
| TAGCCAAAAGAACATGTGAG+TGG | + | chr4_1:69003275-69003294 | None:intergenic | 40.0% | |
| GTGTCAAAACGTTCATAAGG+AGG | + | chr4_1:69001399-69001418 | None:intergenic | 40.0% | |
| TCCGTGTCAAAACGTTCATA+AGG | + | chr4_1:69001402-69001421 | None:intergenic | 40.0% | |
| ! | ATTTTGCTAGCACTCCTCTA+TGG | + | chr4_1:69001595-69001614 | None:intergenic | 40.0% |
| TAGATCCCACATTAAGTGGT+GGG | + | chr4_1:69001677-69001696 | None:intergenic | 40.0% | |
| ATAGATCCCACATTAAGTGG+TGG | + | chr4_1:69001678-69001697 | None:intergenic | 40.0% | |
| GTGGGATCTATTACAAAGTG+TGG | - | chr4_1:69001687-69001706 | Msa0567680:intron | 40.0% | |
| GGGATCTATTACAAAGTGTG+GGG | - | chr4_1:69001689-69001708 | Msa0567680:intron | 40.0% | |
| GGAATAAATACCTAGAACCC+AGG | + | chr4_1:69001849-69001868 | None:intergenic | 40.0% | |
| ACCACTAATCGCTGAAAAAG+TGG | - | chr4_1:69001903-69001922 | Msa0567680:intron | 40.0% | |
| !!! | ACCACTTTTTCAGCGATTAG+TGG | + | chr4_1:69001907-69001926 | None:intergenic | 40.0% |
| TTGTTAAATAGCGGCTACAG+CGG | + | chr4_1:69002062-69002081 | None:intergenic | 40.0% | |
| ! | AATGAATTTTGTCGCCAGGA+TGG | - | chr4_1:69002092-69002111 | Msa0567680:intron | 40.0% |
| ATTACACAACGGCTAACACA+AGG | + | chr4_1:69002281-69002300 | None:intergenic | 40.0% | |
| GTAGTGATACGATTTCGATC+AGG | - | chr4_1:69002465-69002484 | Msa0567680:CDS | 40.0% | |
| !! | TGGGTTAGCACAACCAAATT+GGG | + | chr4_1:69002530-69002549 | None:intergenic | 40.0% |
| !! | ATGGGTTAGCACAACCAAAT+TGG | + | chr4_1:69002531-69002550 | None:intergenic | 40.0% |
| GATGATGTCATACACCAGAA+TGG | + | chr4_1:69002550-69002569 | None:intergenic | 40.0% | |
| TCATTTCTCTGTTGATCCAG+TGG | - | chr4_1:69003066-69003085 | Msa0567680:intron | 40.0% | |
| CATTTCTCTGTTGATCCAGT+GGG | - | chr4_1:69003067-69003086 | Msa0567680:intron | 40.0% | |
| ! | TGTCTGCCACTTGAAGTATA+TGG | + | chr4_1:69003143-69003162 | None:intergenic | 40.0% |
| ATGTGAGTGGAAATAGAAGC+AGG | + | chr4_1:69003262-69003281 | None:intergenic | 40.0% | |
| TAGCCAAAAGAACATGTGAG+TGG | + | chr4_1:69003275-69003294 | None:intergenic | 40.0% | |
| ! | GAGAGTCGGTGTTTACATGT+TGG | + | chr4_1:69001343-69001362 | None:intergenic | 45.0% |
| TGGATCCCACCACTTAATGT+GGG | - | chr4_1:69001669-69001688 | Msa0567680:intron | 45.0% | |
| GCTTCTTTGGCCATAACCTA+GGG | - | chr4_1:69001770-69001789 | Msa0567680:intron | 45.0% | |
| CTTCTTTGGCCATAACCTAG+GGG | - | chr4_1:69001771-69001790 | Msa0567680:intron | 45.0% | |
| GGTATAATGCTACAGTCCAC+TGG | + | chr4_1:69002038-69002057 | None:intergenic | 45.0% | |
| GAATAAACTCCACTCCATCC+TGG | + | chr4_1:69002109-69002128 | None:intergenic | 45.0% | |
| ATCTCTGGCAACAGTGATGT+TGG | - | chr4_1:69002184-69002203 | Msa0567680:CDS | 45.0% | |
| ATCAGGTGATCCCAATCTCA+CGG | - | chr4_1:69002482-69002501 | Msa0567680:CDS | 45.0% | |
| GTTAGCACAACCAAATTGGG+AGG | + | chr4_1:69002527-69002546 | None:intergenic | 45.0% | |
| TTGGTTGTGCTAACCCATTC+TGG | - | chr4_1:69002533-69002552 | Msa0567680:intron | 45.0% | |
| GACATCATCTTCTGCAGTTG+AGG | - | chr4_1:69002561-69002580 | Msa0567680:intron | 45.0% | |
| GTGATTTCAGGACAATAGGC+TGG | + | chr4_1:69003039-69003058 | None:intergenic | 45.0% | |
| GTAGAAAAGCTGCGAGCATT+TGG | + | chr4_1:69003183-69003202 | None:intergenic | 45.0% | |
| ! | GAGAGTCGGTGTTTACATGT+TGG | + | chr4_1:69001343-69001362 | None:intergenic | 45.0% |
| TGGATCCCACCACTTAATGT+GGG | - | chr4_1:69001669-69001688 | Msa0567680:intron | 45.0% | |
| GCTTCTTTGGCCATAACCTA+GGG | - | chr4_1:69001770-69001789 | Msa0567680:intron | 45.0% | |
| CTTCTTTGGCCATAACCTAG+GGG | - | chr4_1:69001771-69001790 | Msa0567680:intron | 45.0% | |
| GGTATAATGCTACAGTCCAC+TGG | + | chr4_1:69002038-69002057 | None:intergenic | 45.0% | |
| GAATAAACTCCACTCCATCC+TGG | + | chr4_1:69002109-69002128 | None:intergenic | 45.0% | |
| ATCTCTGGCAACAGTGATGT+TGG | - | chr4_1:69002184-69002203 | Msa0567680:CDS | 45.0% | |
| ATCAGGTGATCCCAATCTCA+CGG | - | chr4_1:69002482-69002501 | Msa0567680:CDS | 45.0% | |
| GTTAGCACAACCAAATTGGG+AGG | + | chr4_1:69002527-69002546 | None:intergenic | 45.0% | |
| TTGGTTGTGCTAACCCATTC+TGG | - | chr4_1:69002533-69002552 | Msa0567680:intron | 45.0% | |
| GACATCATCTTCTGCAGTTG+AGG | - | chr4_1:69002561-69002580 | Msa0567680:intron | 45.0% | |
| GTGATTTCAGGACAATAGGC+TGG | + | chr4_1:69003039-69003058 | None:intergenic | 45.0% | |
| GTAGAAAAGCTGCGAGCATT+TGG | + | chr4_1:69003183-69003202 | None:intergenic | 45.0% | |
| ! | TCTAGCTTATGTGCTCCTGC+AGG | - | chr4_1:69001171-69001190 | Msa0567680:three_prime_UTR | 50.0% |
| CTAGCTTATGTGCTCCTGCA+GGG | - | chr4_1:69001172-69001191 | Msa0567680:three_prime_UTR | 50.0% | |
| GTGGATCCCACCACTTAATG+TGG | - | chr4_1:69001668-69001687 | Msa0567680:intron | 50.0% | |
| ACGTTGCTAGCACGCTTCTT+TGG | - | chr4_1:69001757-69001776 | Msa0567680:intron | 50.0% | |
| CGCTTCTTTGGCCATAACCT+AGG | - | chr4_1:69001769-69001788 | Msa0567680:intron | 50.0% | |
| AATCTGCTGCCCCTAGGTTA+TGG | + | chr4_1:69001783-69001802 | None:intergenic | 50.0% | |
| ACGTAAAATCTGCTGCCCCT+AGG | + | chr4_1:69001789-69001808 | None:intergenic | 50.0% | |
| CATAGTTGCTCCTGGGTTCT+AGG | - | chr4_1:69001836-69001855 | Msa0567680:intron | 50.0% | |
| AGCAGCTATAGTGGCGCAAT+AGG | + | chr4_1:69001957-69001976 | None:intergenic | 50.0% | |
| TTAAATAGCGGCTACAGCGG+TGG | + | chr4_1:69002059-69002078 | None:intergenic | 50.0% | |
| ! | ATTTTGTCGCCAGGATGGAG+TGG | - | chr4_1:69002097-69002116 | Msa0567680:intron | 50.0% |
| !! | TGAGGGTACCTTAGGTAACC+AGG | - | chr4_1:69002145-69002164 | Msa0567680:intron | 50.0% |
| ATGTTCCGCCTGGTTACCTA+AGG | + | chr4_1:69002156-69002175 | None:intergenic | 50.0% | |
| TACATAAGCTCGGTTCCCAC+TGG | + | chr4_1:69003085-69003104 | None:intergenic | 50.0% | |
| GGAACCGAGCTTATGTAGTG+AGG | - | chr4_1:69003088-69003107 | Msa0567680:intron | 50.0% | |
| ! | TCTAGCTTATGTGCTCCTGC+AGG | - | chr4_1:69001171-69001190 | Msa0567680:three_prime_UTR | 50.0% |
| CTAGCTTATGTGCTCCTGCA+GGG | - | chr4_1:69001172-69001191 | Msa0567680:three_prime_UTR | 50.0% | |
| GTGGATCCCACCACTTAATG+TGG | - | chr4_1:69001668-69001687 | Msa0567680:intron | 50.0% | |
| ACGTTGCTAGCACGCTTCTT+TGG | - | chr4_1:69001757-69001776 | Msa0567680:intron | 50.0% | |
| CGCTTCTTTGGCCATAACCT+AGG | - | chr4_1:69001769-69001788 | Msa0567680:intron | 50.0% | |
| AATCTGCTGCCCCTAGGTTA+TGG | + | chr4_1:69001783-69001802 | None:intergenic | 50.0% | |
| ACGTAAAATCTGCTGCCCCT+AGG | + | chr4_1:69001789-69001808 | None:intergenic | 50.0% | |
| CATAGTTGCTCCTGGGTTCT+AGG | - | chr4_1:69001836-69001855 | Msa0567680:intron | 50.0% | |
| AGCAGCTATAGTGGCGCAAT+AGG | + | chr4_1:69001957-69001976 | None:intergenic | 50.0% | |
| TTAAATAGCGGCTACAGCGG+TGG | + | chr4_1:69002059-69002078 | None:intergenic | 50.0% | |
| ! | ATTTTGTCGCCAGGATGGAG+TGG | - | chr4_1:69002097-69002116 | Msa0567680:intron | 50.0% |
| !! | TGAGGGTACCTTAGGTAACC+AGG | - | chr4_1:69002145-69002164 | Msa0567680:intron | 50.0% |
| ATGTTCCGCCTGGTTACCTA+AGG | + | chr4_1:69002156-69002175 | None:intergenic | 50.0% | |
| TACATAAGCTCGGTTCCCAC+TGG | + | chr4_1:69003085-69003104 | None:intergenic | 50.0% | |
| GGAACCGAGCTTATGTAGTG+AGG | - | chr4_1:69003088-69003107 | Msa0567680:intron | 50.0% | |
| GGGTACCTTAGGTAACCAGG+CGG | - | chr4_1:69002148-69002167 | Msa0567680:intron | 55.0% | |
| TAACCAGGCGGAACATGCAC+TGG | - | chr4_1:69002160-69002179 | Msa0567680:CDS | 55.0% | |
| ! | GGAACATGCACTGGCATCTC+TGG | - | chr4_1:69002169-69002188 | Msa0567680:CDS | 55.0% |
| GGGTACCTTAGGTAACCAGG+CGG | - | chr4_1:69002148-69002167 | Msa0567680:intron | 55.0% | |
| TAACCAGGCGGAACATGCAC+TGG | - | chr4_1:69002160-69002179 | Msa0567680:CDS | 55.0% | |
| ! | GGAACATGCACTGGCATCTC+TGG | - | chr4_1:69002169-69002188 | Msa0567680:CDS | 55.0% |
| TGAGCAGAAACACGCCCTGC+AGG | + | chr4_1:69001189-69001208 | None:intergenic | 60.0% | |
| ATGCCAGTGCATGTTCCGCC+TGG | + | chr4_1:69002166-69002185 | None:intergenic | 60.0% | |
| TGAGCAGAAACACGCCCTGC+AGG | + | chr4_1:69001189-69001208 | None:intergenic | 60.0% | |
| ATGCCAGTGCATGTTCCGCC+TGG | + | chr4_1:69002166-69002185 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69001168 | 69003487 | 69001168 | ID=Msa0567680;Name=Msa0567680 |
| chr4_1 | mRNA | 69001168 | 69003487 | 69001168 | ID=Msa0567680-mRNA-1;Parent=Msa0567680;Name=Msa0567680-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0|0.8|0.66|1|0.8|0.66|6|266|176 |
| chr4_1 | exon | 69001168 | 69001419 | 69001168 | ID=Msa0567680-mRNA-1:exon:23054;Parent=Msa0567680-mRNA-1 |
| chr4_1 | exon | 69001536 | 69001636 | 69001536 | ID=Msa0567680-mRNA-1:exon:23053;Parent=Msa0567680-mRNA-1 |
| chr4_1 | exon | 69002152 | 69002231 | 69002152 | ID=Msa0567680-mRNA-1:exon:23052;Parent=Msa0567680-mRNA-1 |
| chr4_1 | exon | 69002416 | 69002545 | 69002416 | ID=Msa0567680-mRNA-1:exon:23051;Parent=Msa0567680-mRNA-1 |
| chr4_1 | exon | 69003144 | 69003212 | 69003144 | ID=Msa0567680-mRNA-1:exon:23050;Parent=Msa0567680-mRNA-1 |
| chr4_1 | exon | 69003323 | 69003487 | 69003323 | ID=Msa0567680-mRNA-1:exon:23049;Parent=Msa0567680-mRNA-1 |
| chr4_1 | CDS | 69003323 | 69003487 | 69003323 | ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1 |
| chr4_1 | CDS | 69003144 | 69003212 | 69003144 | ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1 |
| chr4_1 | CDS | 69002416 | 69002545 | 69002416 | ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1 |
| chr4_1 | CDS | 69002152 | 69002231 | 69002152 | ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1 |
| chr4_1 | CDS | 69001550 | 69001636 | 69001550 | ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1 |
| chr4_1 | three_prime_UTR | 69001536 | 69001549 | 69001536 | ID=Msa0567680-mRNA-1:three_prime_utr;Parent=Msa0567680-mRNA-1 |
| chr4_1 | three_prime_UTR | 69001168 | 69001419 | 69001168 | ID=Msa0567680-mRNA-1:three_prime_utr;Parent=Msa0567680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
