AlfalfaGEDB | Msa0567680

M. sativa cultivar zhongmu-4 / Msa0567680

KEGG: -
GO: -
PFAM: PF07876.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0567680	XP_013447005.1	85.000	180	15	2	9	176	118	297	8.71e-102	305

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0567680	A0A072TUC9	85.000	180	15	2	9	176	118	297	4.16e-102	305

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0203330	Msa0567680	0.801350	9.384031e-49	-8.615850e-47
Msa0224980	Msa0567680	0.803717	3.050965e-49	-8.615850e-47
Msa0225030	Msa0567680	0.808555	2.924485e-50	-8.615850e-47
Msa0249670	Msa0567680	0.813540	2.430463e-51	-8.615850e-47
Msa0365350	Msa0567680	0.817447	3.282827e-52	-8.615850e-47
Msa0504640	Msa0567680	0.803659	3.136414e-49	-8.615850e-47
Msa0508770	Msa0567680	0.821031	5.012401e-53	-8.615850e-47
Msa0565930	Msa0567680	0.821746	3.427206e-53	-8.615850e-47
Msa0567420	Msa0567680	0.805514	1.286729e-49	-8.615850e-47
Msa0567680	Msa0567700	0.996183	2.186083e-224	-8.615850e-47

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0567680	MtrunA17_Chr8g0386421	85.000	180	15	2	9	176	118	297	8.01e-106	305

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0567680	AT2G32500.2	51.111	180	76	2	9	176	97	276	2.03e-58	184
Msa0567680	AT2G32500.1	51.282	117	54	1	9	122	97	213	2.75e-35	123

Showing 1 to 2 of 2 entries

Previous1Next

Find 46 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAGAGATAGTGATTTC+AGG	0.286116	4_1:+69001585	None:intergenic
ACAACATAAGTATAGTGGTC+AGG	0.505672	4_1:+69003420	None:intergenic
AGTTCTAAGGAGTATACTCA+TGG	0.556075	4_1:-69002192	Msa0567680:CDS
ATACTTATGTTGTTTACATG+CGG	0.565208	4_1:-69003410	Msa0567680:CDS
ATATTAAAAGTGTACCTTGA+AGG	0.446290	4_1:+69001172	None:intergenic
ATCAGGTGATCCCAATCTCA+CGG	0.579743	4_1:-69002151	Msa0567680:intron
ATCTCTGGCAACAGTGATGT+TGG	0.558570	4_1:-69002449	Msa0567680:CDS
ATGATTTATATATTTCGCAA+AGG	0.580470	4_1:-69003148	Msa0567680:CDS
ATGCCAGTGCATGTTCCGCC+TGG	0.536544	4_1:+69002470	None:intergenic
ATGTCAAAATCAAACCTTCA+AGG	0.507168	4_1:-69001186	Msa0567680:three_prime_UTR

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCAGGGATTAATTAATG+TGG	-	chr4_1:69001436-69001455	Msa0567680:intron	30.0%
TTATATATTTCGCAAAGGAG+AGG	-	chr4_1:69001490-69001509	Msa0567680:intron	30.0%
TCAATTTATCGATCCATAAG+AGG	+	chr4_1:69001535-69001554	None:intergenic	30.0%
CAATTCATATTTGACCATAG+AGG	-	chr4_1:69001578-69001597	Msa0567680:CDS	30.0%
TTCCTATATACTTCAGTCTT+AGG	-	chr4_1:69001865-69001884	Msa0567680:intron	30.0%
ATCCTAAGACTGAAGTATAT+AGG	+	chr4_1:69001870-69001889	None:intergenic	30.0%
GTAAATTGTACTATCAAGGA+AGG	+	chr4_1:69002215-69002234	None:intergenic	30.0%
AACATCTGAATAAATGTTGG+TGG	+	chr4_1:69002257-69002276	None:intergenic	30.0%
GAATTTCAACGAAAGTTCTA+AGG	-	chr4_1:69002428-69002447	Msa0567680:CDS	30.0%
GCCAAGAATATAAAGATGTA+AGG	-	chr4_1:69002604-69002623	Msa0567680:intron	30.0%

Showing 1 to 10 of 294 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	69001168	69003487	69001168	ID=Msa0567680;Name=Msa0567680
chr4_1	mRNA	69001168	69003487	69001168	ID=Msa0567680-mRNA-1;Parent=Msa0567680;Name=Msa0567680-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0\|0.8\|0.66\|1\|0.8\|0.66\|6\|266\|176
chr4_1	exon	69001168	69001419	69001168	ID=Msa0567680-mRNA-1:exon:23054;Parent=Msa0567680-mRNA-1
chr4_1	exon	69001536	69001636	69001536	ID=Msa0567680-mRNA-1:exon:23053;Parent=Msa0567680-mRNA-1
chr4_1	exon	69002152	69002231	69002152	ID=Msa0567680-mRNA-1:exon:23052;Parent=Msa0567680-mRNA-1
chr4_1	exon	69002416	69002545	69002416	ID=Msa0567680-mRNA-1:exon:23051;Parent=Msa0567680-mRNA-1
chr4_1	exon	69003144	69003212	69003144	ID=Msa0567680-mRNA-1:exon:23050;Parent=Msa0567680-mRNA-1
chr4_1	exon	69003323	69003487	69003323	ID=Msa0567680-mRNA-1:exon:23049;Parent=Msa0567680-mRNA-1
chr4_1	CDS	69003323	69003487	69003323	ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1
chr4_1	CDS	69003144	69003212	69003144	ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1
chr4_1	CDS	69002416	69002545	69002416	ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1
chr4_1	CDS	69002152	69002231	69002152	ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1
chr4_1	CDS	69001550	69001636	69001550	ID=Msa0567680-mRNA-1:cds;Parent=Msa0567680-mRNA-1
chr4_1	three_prime_UTR	69001536	69001549	69001536	ID=Msa0567680-mRNA-1:three_prime_utr;Parent=Msa0567680-mRNA-1
chr4_1	three_prime_UTR	69001168	69001419	69001168	ID=Msa0567680-mRNA-1:three_prime_utr;Parent=Msa0567680-mRNA-1

Gene Sequence

>Msa0567680

ATGTCTAGCTTATGTGCTCCTGCAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTTATGTTGTTTACATGCGGTTTCAGAAAAATGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCGTGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCAACGAAAGTTCTAAGGAGTATACTCATGGAGTAGTGATACGATTTCGATCAGGTGATCCCAATCTCACGGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTATCTCTTCATTTCTCTGTTGATCCAGTGGGAACCGAGCTTATGTAG

Protein sequence

>Msa0567680

MSSLCAPAGRVSAQNPDHYTYVVYMRFQKNENLEKFYENSFYLKVLKDHVMTYCRGLINVDYESEVDDDMIYIFRKGEDGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFNESSKEYTHGVVIRFRSGDPNLTVWISKFQPIVLKSLSLHFSVDPVGTELM*