AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267800 MtrunA17_Chr8g0386421 92.977 299 11 2 1 291 1 297 0.0 528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267800 AT2G32500.2 57.721 272 110 3 24 291 6 276 6.79e-109 317
Msa1267800 AT2G32500.1 56.938 209 85 3 24 228 6 213 4.95e-77 234

Find 79 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATCTGTTTATTGTTTC+GGG 0.115077 8_2:+73272644 Msa1267800:three_prime_UTR
TCCTTACATCTTTGTATTCT+TGG 0.139609 8_2:-73271820 None:intergenic
CTGCTATCTGTTTATTGTTT+CGG 0.203560 8_2:+73272643 Msa1267800:three_prime_UTR
TTACATGCGGTTTCAGAAAA+AGG 0.210570 8_2:+73270436 Msa1267800:CDS
AATGAAGAGACAGTGATTTC+AGG 0.265594 8_2:-73272292 None:intergenic
CTTGAGAACCTTCAAGTAAA+AGG 0.266883 8_2:-73270486 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 8_2:-73269491 None:intergenic
TATACTCCTTAGAGCTTTCA+TGG 0.280782 8_2:-73271650 None:intergenic
TAATACCACCCATTTGATAC+TGG 0.287395 8_2:-73269772 None:intergenic
TTTCCACTCACAAGTTCTTT+TGG 0.299688 8_2:+73272504 Msa1267800:three_prime_UTR
GGTATTATTGCTATTTCATT+AGG 0.307379 8_2:+73269788 Msa1267800:CDS
GGAACATGCACTGGCATCTC+TGG 0.334936 8_2:+73271384 Msa1267800:CDS
AATGCATTAGCGAGCTAAAA+AGG 0.335331 8_2:+73269225 Msa1267800:five_prime_UTR
TGAAAAGGTTACACTGTGTT+AGG 0.360808 8_2:-73272729 None:intergenic
TTTCCTCTGAGAAGCGAGAT+TGG 0.373152 8_2:-73269540 None:intergenic
TCATCTGATTCTTCTTTGGT+TGG 0.376105 8_2:-73269487 None:intergenic
CCTTTACCTTTACCTTTACA+AGG 0.391427 8_2:+73269353 Msa1267800:CDS
GAGAAGCGAGATTGGAGCTT+TGG 0.392038 8_2:-73269532 None:intergenic
TTCTTAAAGCTCAATGTGTC+TGG 0.392150 8_2:+73272618 Msa1267800:three_prime_UTR
GAATTTCCATGAAAGCTCTA+AGG 0.406314 8_2:+73271644 Msa1267800:CDS
AAAACTTTCCTATGGCAATT+GGG 0.428568 8_2:-73272570 None:intergenic
AAAATAAAATTATATTGAAA+AGG 0.440829 8_2:-73272744 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 8_2:-73272284 None:intergenic
TCATTTAATGAGGGTACCTT+AGG 0.442429 8_2:+73271352 Msa1267800:CDS
TTTCTGAAACCGCATGTAAA+CGG 0.443161 8_2:-73270432 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 8_2:+73272311 Msa1267800:CDS
GGCTCTTGAATCCATTCCAC+TGG 0.451282 8_2:-73269466 None:intergenic
AAAGGTAAAGATAGAGGTGT+TGG 0.454888 8_2:-73269335 None:intergenic
AAGGTAAAGATAGAGGTGTT+GGG 0.456800 8_2:-73269334 None:intergenic
GTACACAACCCAGTATCAAA+TGG 0.466541 8_2:+73269763 Msa1267800:CDS
ATCTCGCTTCTCAGAGGAAA+AGG 0.472916 8_2:+73269543 Msa1267800:CDS
AAAGGTAAAGGTAAAGATAG+AGG 0.480721 8_2:-73269341 None:intergenic
TCATTTCTCTGTTGATCCAG+TGG 0.484155 8_2:+73272310 Msa1267800:CDS
TTGTGTAAATTGTACTATCA+AGG 0.504240 8_2:-73271431 None:intergenic
ATGTCAAAATCAAACCTTCA+AGG 0.507168 8_2:+73272682 Msa1267800:three_prime_UTR
ACGGCATGAGTATAGTGGTC+AGG 0.516130 8_2:-73270413 None:intergenic
TGTAAACGGCATGAGTATAG+TGG 0.519619 8_2:-73270418 None:intergenic
AATACCACCCATTTGATACT+GGG 0.530236 8_2:-73269771 None:intergenic
TAACCAGGCGGAACATGCAC+TGG 0.530562 8_2:+73271375 Msa1267800:CDS
TAACTGTCTGGACCTTGTAA+AGG 0.530646 8_2:-73269365 None:intergenic
TACACAACCCAGTATCAAAT+GGG 0.530800 8_2:+73269764 Msa1267800:CDS
CCTTGTAAAGGTAAAGGTAA+AGG 0.531828 8_2:-73269353 None:intergenic
GTAGTGATACGATTCCGATC+AGG 0.536411 8_2:+73271681 Msa1267800:CDS
TCTGGACCTTGTAAAGGTAA+AGG 0.536544 8_2:-73269359 None:intergenic
ATGCCAGTGCATGTTCCGCC+TGG 0.536544 8_2:-73271378 None:intergenic
AGCTCTAAGGAGTATACTCA+TGG 0.540924 8_2:+73271657 Msa1267800:CDS
GCAATTGGGTTTCAGAATGT+CGG 0.544545 8_2:-73272556 None:intergenic
TTGTGAGTGGAAATAGAAGC+AGG 0.552159 8_2:-73272494 None:intergenic
GTGATTTCAGGACAATAGGC+TGG 0.558184 8_2:-73272280 None:intergenic
ATCTCTGGCAACAGTGATGT+TGG 0.558570 8_2:+73271399 Msa1267800:CDS
TACATAAGCTCAGTTCCCAC+TGG 0.566469 8_2:-73272326 None:intergenic
CGAAACAATAAACAGATAGC+AGG 0.568699 8_2:-73272642 None:intergenic
TTGTCTGCTAAAAGCAAAGG+AGG 0.570007 8_2:+73269700 Msa1267800:CDS
TGTGGCCAGGAGTTCAGCCA+TGG 0.572033 8_2:+73271307 Msa1267800:intron
ATGTTCCGCCTGGTTACCTA+AGG 0.573483 8_2:-73271368 None:intergenic
AAAGAATAAACTCCACTCCA+TGG 0.578056 8_2:-73271324 None:intergenic
ATGATTTATATATTTCGCAA+AGG 0.580470 8_2:+73270685 Msa1267800:CDS
AGGTAAAGATAGAGGTGTTG+GGG 0.581375 8_2:-73269333 None:intergenic
CCAGGAGTTCAGCCATGGAG+TGG 0.591915 8_2:+73271312 Msa1267800:intron
TTTCTACATGAATTGTGACT+GGG 0.592766 8_2:+73272436 Msa1267800:three_prime_UTR
TGAGGGTACCTTAGGTAACC+AGG 0.595164 8_2:+73271360 Msa1267800:CDS
GTAAATTGTACTATCAAGGA+AGG 0.603275 8_2:-73271427 None:intergenic
TTCTGAAACCCAATTGCCAT+AGG 0.610330 8_2:+73272562 Msa1267800:three_prime_UTR
ATACTCATGCCGTTTACATG+CGG 0.618288 8_2:+73270423 Msa1267800:CDS
TTATATATTTCGCAAAGGAG+AGG 0.620757 8_2:+73270690 Msa1267800:CDS
CATTTGTCTGCTAAAAGCAA+AGG 0.624906 8_2:+73269697 Msa1267800:CDS
AAAGGAGGGATTATCTGAAG+AGG 0.627071 8_2:+73269715 Msa1267800:CDS
TTCGTGTAGAAGAAAAGTTG+TGG 0.627662 8_2:+73269670 Msa1267800:intron
TGAGATTGGGATAACCTGAT+CGG 0.630126 8_2:-73271695 None:intergenic
TAGCCAAAAGAACTTGTGAG+TGG 0.632547 8_2:-73272507 None:intergenic
TGTCTGCTAAAAGCAAAGGA+GGG 0.635547 8_2:+73269701 Msa1267800:CDS
GGAACTGAGCTTATGTAGTG+AGG 0.643018 8_2:+73272332 Msa1267800:exon
GCTCCAATCTCGCTTCTCAG+AGG 0.670450 8_2:+73269537 Msa1267800:CDS
GGTGTTGGGGTGAATTGACG+AGG 0.673613 8_2:-73269320 None:intergenic
GCTGCGTATAAATATCTCGA+AGG 0.686766 8_2:-73271798 None:intergenic
TTGATAGTACAATTTACACA+AGG 0.690159 8_2:+73271433 Msa1267800:CDS
ACAACCCAGTATCAAATGGG+TGG 0.704834 8_2:+73269767 Msa1267800:CDS
GTGTTGGGGTGAATTGACGA+GGG 0.732265 8_2:-73269319 None:intergenic
GGGTACCTTAGGTAACCAGG+CGG 0.811298 8_2:+73271363 Msa1267800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTTATAATAGA+TGG - chr8_2:73270017-73270036 None:intergenic 10.0%
!! TCTATTATAAAAAAAAAACA+AGG + chr8_2:73270017-73270036 Msa1267800:intron 10.0%
!! AATATAAACTAAACTATATT+TGG + chr8_2:73272227-73272246 Msa1267800:intron 10.0%
!! TTATTACTTATTACTGTATT+AGG + chr8_2:73269592-73269611 Msa1267800:intron 15.0%
!!! TATCTATTTTTTTCAACATT+AGG + chr8_2:73270159-73270178 Msa1267800:intron 15.0%
!! TTATTCTAACAGTAATTATT+TGG + chr8_2:73271251-73271270 Msa1267800:intron 15.0%
!! TATTCTAACAGTAATTATTT+GGG + chr8_2:73271252-73271271 Msa1267800:intron 15.0%
!! GTTATTAATATTTAATTGTC+AGG + chr8_2:73271618-73271637 Msa1267800:intron 15.0%
!! TATAATTCAGAATATTTGTT+TGG + chr8_2:73271961-73271980 Msa1267800:intron 15.0%
!! ATAATTCAGAATATTTGTTT+GGG + chr8_2:73271962-73271981 Msa1267800:intron 15.0%
!!! ATTTCAGTTTTTATTTTTGA+AGG - chr8_2:73272164-73272183 None:intergenic 15.0%
!!! AATACATCATATTTTTCTAT+TGG + chr8_2:73272791-73272810 Msa1267800:three_prime_UTR 15.0%
!! TAATCATAATGACATGAAAA+TGG - chr8_2:73269628-73269647 None:intergenic 20.0%
!!! AGAACATTTACTTTGTTATT+AGG + chr8_2:73269851-73269870 Msa1267800:intron 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG + chr8_2:73270034-73270053 Msa1267800:intron 20.0%
!! ATTTGAATTCAAATGTTACT+CGG - chr8_2:73270132-73270151 None:intergenic 20.0%
!! AAAATAAAGGAAAAGAGAAT+CGG - chr8_2:73270557-73270576 None:intergenic 20.0%
!!! ACCTTTACTAATTTTGTTTT+AGG + chr8_2:73270621-73270640 Msa1267800:intron 20.0%
!!! CCTTTACTAATTTTGTTTTA+GGG + chr8_2:73270622-73270641 Msa1267800:intron 20.0%
!! ATGATTTATATATTTCGCAA+AGG + chr8_2:73270685-73270704 Msa1267800:CDS 20.0%
!! TTACTGTTAGAATAAAATAC+TGG - chr8_2:73271246-73271265 None:intergenic 20.0%
!! ATTCTAACAGTAATTATTTG+GGG + chr8_2:73271253-73271272 Msa1267800:intron 20.0%
!!! TCTTTTGATATCATTTAATG+AGG + chr8_2:73271342-73271361 Msa1267800:CDS 20.0%
!!! CTTTTGATATCATTTAATGA+GGG + chr8_2:73271343-73271362 Msa1267800:CDS 20.0%
!!! TTAAACATTGTTTTATGCTT+AGG + chr8_2:73271860-73271879 Msa1267800:intron 20.0%
!! ATTATATAGTTTACAGGAAA+GGG - chr8_2:73271947-73271966 None:intergenic 20.0%
!! AATTATATAGTTTACAGGAA+AGG - chr8_2:73271948-73271967 None:intergenic 20.0%
!! TTCTGAATTATATAGTTTAC+AGG - chr8_2:73271953-73271972 None:intergenic 20.0%
!! TAATTCAGAATATTTGTTTG+GGG + chr8_2:73271963-73271982 Msa1267800:intron 20.0%
!! AACTAAACTATATTTGGATT+TGG + chr8_2:73272233-73272252 Msa1267800:intron 20.0%
!!! GGTATTATTGCTATTTCATT+AGG + chr8_2:73269788-73269807 Msa1267800:CDS 25.0%
! ATTCTAGATGAAATTCATGT+GGG - chr8_2:73269939-73269958 None:intergenic 25.0%
!!! ATTAAACTAGAGAAGTGTTA+AGG - chr8_2:73269991-73270010 None:intergenic 25.0%
!! AGTTTTCATAGAACTTTTCA+AGG - chr8_2:73270466-73270485 None:intergenic 25.0%
! TGAGAGTAACAGAAAAATAA+AGG - chr8_2:73270570-73270589 None:intergenic 25.0%
! CCCTAAAACAAAATTAGTAA+AGG - chr8_2:73270625-73270644 None:intergenic 25.0%
!!! GTTTTAGGGATTAATTAATG+TGG + chr8_2:73270636-73270655 Msa1267800:intron 25.0%
!! ATTCCTAATACTTTAGTCTT+AGG + chr8_2:73271000-73271019 Msa1267800:intron 25.0%
!! TATCCTAAGACTAAAGTATT+AGG - chr8_2:73271006-73271025 None:intergenic 25.0%
! TTCTAACAGTAATTATTTGG+GGG + chr8_2:73271254-73271273 Msa1267800:intron 25.0%
! TTGTGTAAATTGTACTATCA+AGG - chr8_2:73271434-73271453 None:intergenic 25.0%
!! TTGATAGTACAATTTACACA+AGG + chr8_2:73271433-73271452 Msa1267800:CDS 25.0%
! TAAAAGACCTAATTACACAA+CGG - chr8_2:73271507-73271526 None:intergenic 25.0%
!! TGTAATTAGGTCTTTTAACA+TGG + chr8_2:73271510-73271529 Msa1267800:intron 25.0%
!!! GTCTGATTTTTTTTCCAATT+TGG + chr8_2:73271729-73271748 Msa1267800:intron 25.0%
! TGTAAAATGTATTTGTCTAC+AGG - chr8_2:73272121-73272140 None:intergenic 25.0%
!! TATATTTGGATTTGGTAAAC+AGG + chr8_2:73272241-73272260 Msa1267800:intron 25.0%
!! ATATAAAAAGTGTACCTTGA+AGG - chr8_2:73272699-73272718 None:intergenic 25.0%
AAAGGTAAAGGTAAAGATAG+AGG - chr8_2:73269344-73269363 None:intergenic 30.0%
CATTCTAGATGAAATTCATG+TGG - chr8_2:73269940-73269959 None:intergenic 30.0%
! TAGTCTCTTTTTGTTCTTTC+TGG - chr8_2:73270256-73270275 None:intergenic 30.0%
! TGAAAACTCCTTTTACTTGA+AGG + chr8_2:73270478-73270497 Msa1267800:CDS 30.0%
TTATATATTTCGCAAAGGAG+AGG + chr8_2:73270690-73270709 Msa1267800:CDS 30.0%
TTCTGGATCGATAAATTGAA+GGG + chr8_2:73270736-73270755 Msa1267800:intron 30.0%
CAATTCATATTTGACCATAC+AGG + chr8_2:73270778-73270797 Msa1267800:intron 30.0%
! TTAGCATCCACATTTTGTAA+TGG - chr8_2:73270882-73270901 None:intergenic 30.0%
TCTAACAGTAATTATTTGGG+GGG + chr8_2:73271255-73271274 Msa1267800:intron 30.0%
GTAAATTGTACTATCAAGGA+AGG - chr8_2:73271430-73271449 None:intergenic 30.0%
AACATGTGAATAAATGTTGG+TGG - chr8_2:73271472-73271491 None:intergenic 30.0%
!!! CAGTTCATTGTTTTGACAAA+AGG + chr8_2:73271549-73271568 Msa1267800:intron 30.0%
TCCTTACATCTTTGTATTCT+TGG - chr8_2:73271823-73271842 None:intergenic 30.0%
! GTCATTTGTTACACAACTTT+AGG + chr8_2:73271885-73271904 Msa1267800:intron 30.0%
! ATTTGTTACACAACTTTAGG+TGG + chr8_2:73271888-73271907 Msa1267800:intron 30.0%
! TCGAGTAAAATTGAAAGTGT+CGG - chr8_2:73272030-73272049 None:intergenic 30.0%
TATTTATTCCAAATGCTCAC+AGG + chr8_2:73272412-73272431 Msa1267800:intron 30.0%
! TTTTCTACATGAATTGTGAC+TGG + chr8_2:73272435-73272454 Msa1267800:three_prime_UTR 30.0%
TTTCTACATGAATTGTGACT+GGG + chr8_2:73272436-73272455 Msa1267800:three_prime_UTR 30.0%
AAAACTTTCCTATGGCAATT+GGG - chr8_2:73272573-73272592 None:intergenic 30.0%
AAAAACTTTCCTATGGCAAT+TGG - chr8_2:73272574-73272593 None:intergenic 30.0%
AAGCAACAAAAACTTTCCTA+TGG - chr8_2:73272581-73272600 None:intergenic 30.0%
CTGCTATCTGTTTATTGTTT+CGG + chr8_2:73272643-73272662 Msa1267800:three_prime_UTR 30.0%
TGCTATCTGTTTATTGTTTC+GGG + chr8_2:73272644-73272663 Msa1267800:three_prime_UTR 30.0%
ATGTCAAAATCAAACCTTCA+AGG + chr8_2:73272682-73272701 Msa1267800:three_prime_UTR 30.0%
AATGCATTAGCGAGCTAAAA+AGG + chr8_2:73269225-73269244 Msa1267800:five_prime_UTR 35.0%
!! AAGGTAAAGATAGAGGTGTT+GGG - chr8_2:73269337-73269356 None:intergenic 35.0%
! AAAGGTAAAGATAGAGGTGT+TGG - chr8_2:73269338-73269357 None:intergenic 35.0%
CCTTGTAAAGGTAAAGGTAA+AGG - chr8_2:73269356-73269375 None:intergenic 35.0%
CCTTTACCTTTACCTTTACA+AGG + chr8_2:73269353-73269372 Msa1267800:CDS 35.0%
AGGAAATTGAAGTAACTGTC+TGG - chr8_2:73269380-73269399 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG - chr8_2:73269490-73269509 None:intergenic 35.0%
ACTCTCATCTGATTCTTCTT+TGG - chr8_2:73269494-73269513 None:intergenic 35.0%
TTCGTGTAGAAGAAAAGTTG+TGG + chr8_2:73269670-73269689 Msa1267800:intron 35.0%
CATTTGTCTGCTAAAAGCAA+AGG + chr8_2:73269697-73269716 Msa1267800:CDS 35.0%
TACACAACCCAGTATCAAAT+GGG + chr8_2:73269764-73269783 Msa1267800:CDS 35.0%
AATACCACCCATTTGATACT+GGG - chr8_2:73269774-73269793 None:intergenic 35.0%
TAATACCACCCATTTGATAC+TGG - chr8_2:73269775-73269794 None:intergenic 35.0%
ACACTCACACACATTGAATT+GGG + chr8_2:73269893-73269912 Msa1267800:intron 35.0%
TGTGTTCGACATGTTACATT+TGG - chr8_2:73270068-73270087 None:intergenic 35.0%
TACTCGGTTACTCTATCTAT+CGG - chr8_2:73270116-73270135 None:intergenic 35.0%
!! TTTCTGAAACCGCATGTAAA+CGG - chr8_2:73270435-73270454 None:intergenic 35.0%
TTACATGCGGTTTCAGAAAA+AGG + chr8_2:73270436-73270455 Msa1267800:CDS 35.0%
CTTGAGAACCTTCAAGTAAA+AGG - chr8_2:73270489-73270508 None:intergenic 35.0%
! CTTTTACTTGAAGGTTCTCA+AGG + chr8_2:73270487-73270506 Msa1267800:CDS 35.0%
TTTACATGTTGGTGCATACA+TGG - chr8_2:73270532-73270551 None:intergenic 35.0%
ATCTCAAAACGTTCATAAGG+AGG - chr8_2:73270599-73270618 None:intergenic 35.0%
!!! TCCTTATGAACGTTTTGAGA+TGG + chr8_2:73270598-73270617 Msa1267800:intron 35.0%
TCCATCTCAAAACGTTCATA+AGG - chr8_2:73270602-73270621 None:intergenic 35.0%
CTGATTTACATTTCCTCTTC+TGG + chr8_2:73270719-73270738 Msa1267800:intron 35.0%
TCAATTTATCGATCCAGAAG+AGG - chr8_2:73270735-73270754 None:intergenic 35.0%
CTTCTGGATCGATAAATTGA+AGG + chr8_2:73270735-73270754 Msa1267800:intron 35.0%
TTTAACACTCACTCTCTCAT+TGG + chr8_2:73270819-73270838 Msa1267800:intron 35.0%
CTCATTGGATGAAATCAATG+TGG + chr8_2:73270834-73270853 Msa1267800:intron 35.0%
AAAATGAACATAGTTGCTCC+TGG + chr8_2:73270964-73270983 Msa1267800:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG + chr8_2:73270965-73270984 Msa1267800:intron 35.0%
TTGACTAATAGCAGCTATAG+TGG - chr8_2:73271100-73271119 None:intergenic 35.0%
!! GTGATTTGTTCAAATTCCAC+TGG + chr8_2:73271153-73271172 Msa1267800:intron 35.0%
! GAAGCAGTGTTGTTAAATAG+CGG - chr8_2:73271205-73271224 None:intergenic 35.0%
! GGTGGATCAAATGAATTTTG+TGG + chr8_2:73271289-73271308 Msa1267800:intron 35.0%
! ATCAAATGAATTTTGTGGCC+AGG + chr8_2:73271294-73271313 Msa1267800:intron 35.0%
AAAGAATAAACTCCACTCCA+TGG - chr8_2:73271327-73271346 None:intergenic 35.0%
!! TCATTTAATGAGGGTACCTT+AGG + chr8_2:73271352-73271371 Msa1267800:CDS 35.0%
GGCAACATGTGAATAAATGT+TGG - chr8_2:73271475-73271494 None:intergenic 35.0%
!! GGTCTTTTAACATGGTTTGT+TGG + chr8_2:73271518-73271537 Msa1267800:intron 35.0%
GAATTTCCATGAAAGCTCTA+AGG + chr8_2:73271644-73271663 Msa1267800:CDS 35.0%
TATACTCCTTAGAGCTTTCA+TGG - chr8_2:73271653-73271672 None:intergenic 35.0%
ACATAACAGACCATGAGATT+GGG - chr8_2:73271711-73271730 None:intergenic 35.0%
GCCAAGAATACAAAGATGTA+AGG + chr8_2:73271819-73271838 Msa1267800:intron 35.0%
! TTGGATTTGGTAAACAGGTA+TGG + chr8_2:73272246-73272265 Msa1267800:intron 35.0%
AATGAAGAGACAGTGATTTC+AGG - chr8_2:73272295-73272314 None:intergenic 35.0%
!! TCCTCTTCTTTTTAGGAACA+AGG + chr8_2:73272461-73272480 Msa1267800:three_prime_UTR 35.0%
TCCTTGTTCCTAAAAAGAAG+AGG - chr8_2:73272465-73272484 None:intergenic 35.0%
!! CTTCTTTTTAGGAACAAGGA+AGG + chr8_2:73272465-73272484 Msa1267800:three_prime_UTR 35.0%
! TTTCCACTCACAAGTTCTTT+TGG + chr8_2:73272504-73272523 Msa1267800:three_prime_UTR 35.0%
TTCTTAAAGCTCAATGTGTC+TGG + chr8_2:73272618-73272637 Msa1267800:three_prime_UTR 35.0%
CGAAACAATAAACAGATAGC+AGG - chr8_2:73272645-73272664 None:intergenic 35.0%
TGAAAAGGTTACACTGTGTT+AGG - chr8_2:73272732-73272751 None:intergenic 35.0%
!! AGGTAAAGATAGAGGTGTTG+GGG - chr8_2:73269336-73269355 None:intergenic 40.0%
TCTGGACCTTGTAAAGGTAA+AGG - chr8_2:73269362-73269381 None:intergenic 40.0%
TAACTGTCTGGACCTTGTAA+AGG - chr8_2:73269368-73269387 None:intergenic 40.0%
CTCAATTCAATGCATGCATG+CGG - chr8_2:73269412-73269431 None:intergenic 40.0%
!!! TTTCTTTTTCAGCATGCCAG+TGG + chr8_2:73269450-73269469 Msa1267800:intron 40.0%
TTGTCTGCTAAAAGCAAAGG+AGG + chr8_2:73269700-73269719 Msa1267800:CDS 40.0%
TGTCTGCTAAAAGCAAAGGA+GGG + chr8_2:73269701-73269720 Msa1267800:CDS 40.0%
AAAGGAGGGATTATCTGAAG+AGG + chr8_2:73269715-73269734 Msa1267800:CDS 40.0%
GTACACAACCCAGTATCAAA+TGG + chr8_2:73269763-73269782 Msa1267800:CDS 40.0%
CACACTCACACACATTGAAT+TGG + chr8_2:73269892-73269911 Msa1267800:intron 40.0%
TTTACTCTCATGTTCCCAAG+TGG - chr8_2:73270230-73270249 None:intergenic 40.0%
TTAAGAGATGCTAGACGCAT+AGG - chr8_2:73270298-73270317 None:intergenic 40.0%
TGTAAACGGCATGAGTATAG+TGG - chr8_2:73270421-73270440 None:intergenic 40.0%
! ATACTCATGCCGTTTACATG+CGG + chr8_2:73270423-73270442 Msa1267800:CDS 40.0%
! GAGAATCGGTGTTTACATGT+TGG - chr8_2:73270543-73270562 None:intergenic 40.0%
!! GTTTTGTTAGCACTCCTGTA+TGG - chr8_2:73270795-73270814 None:intergenic 40.0%
!! GTAATGGATCCCACATAAAG+TGG - chr8_2:73270866-73270885 None:intergenic 40.0%
GTGGGATCCATTACAAAATG+TGG + chr8_2:73270872-73270891 Msa1267800:intron 40.0%
CATAAAATCTGCTTTCCCCT+AGG - chr8_2:73270924-73270943 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG - chr8_2:73270985-73271004 None:intergenic 40.0%
!!! ACCACTTTTTCCACGATTAG+CGG - chr8_2:73271042-73271061 None:intergenic 40.0%
AACAGTAATTATTTGGGGGG+TGG + chr8_2:73271258-73271277 Msa1267800:intron 40.0%
ACAGTAATTATTTGGGGGGT+GGG + chr8_2:73271259-73271278 Msa1267800:intron 40.0%
ATTACACAACGGCTAACACA+AGG - chr8_2:73271496-73271515 None:intergenic 40.0%
GTGTTAGCCGTTGTGTAATT+AGG + chr8_2:73271497-73271516 Msa1267800:intron 40.0%
!! AGCTCTAAGGAGTATACTCA+TGG + chr8_2:73271657-73271676 Msa1267800:CDS 40.0%
TGAGATTGGGATAACCTGAT+CGG - chr8_2:73271698-73271717 None:intergenic 40.0%
ATCAGGTTATCCCAATCTCA+TGG + chr8_2:73271698-73271717 Msa1267800:intron 40.0%
GACATAACAGACCATGAGAT+TGG - chr8_2:73271712-73271731 None:intergenic 40.0%
GCTGCGTATAAATATCTCGA+AGG - chr8_2:73271801-73271820 None:intergenic 40.0%
GTTACACAACTTTAGGTGGA+AGG + chr8_2:73271892-73271911 Msa1267800:intron 40.0%
!! GTGGAAGGTAGCTTGTTAAA+TGG + chr8_2:73271907-73271926 Msa1267800:intron 40.0%
! GTTTGGGGATCATTTTCTCT+TGG + chr8_2:73271978-73271997 Msa1267800:intron 40.0%
GACAGTGATTTCAGGACAAT+AGG - chr8_2:73272287-73272306 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG + chr8_2:73272310-73272329 Msa1267800:CDS 40.0%
CATTTCTCTGTTGATCCAGT+GGG + chr8_2:73272311-73272330 Msa1267800:CDS 40.0%
AACTTGCCATATGCTTCAAG+TGG + chr8_2:73272374-73272393 Msa1267800:intron 40.0%
GTAGAAAACCTGTGAGCATT+TGG - chr8_2:73272423-73272442 None:intergenic 40.0%
! CTGGGTTTCCTCTTCTTTTT+AGG + chr8_2:73272454-73272473 Msa1267800:three_prime_UTR 40.0%
TTGTGAGTGGAAATAGAAGC+AGG - chr8_2:73272497-73272516 None:intergenic 40.0%
TAGCCAAAAGAACTTGTGAG+TGG - chr8_2:73272510-73272529 None:intergenic 40.0%
GCAATTGGGTTTCAGAATGT+CGG - chr8_2:73272559-73272578 None:intergenic 40.0%
!! TTCTGAAACCCAATTGCCAT+AGG + chr8_2:73272562-73272581 Msa1267800:three_prime_UTR 40.0%
CATGCATGCGGTAACTAATG+AGG - chr8_2:73269400-73269419 None:intergenic 45.0%
! TTTTCAGCATGCCAGTGGAA+TGG + chr8_2:73269455-73269474 Msa1267800:intron 45.0%
! TTTCCTCTGAGAAGCGAGAT+TGG - chr8_2:73269543-73269562 None:intergenic 45.0%
ATCTCGCTTCTCAGAGGAAA+AGG + chr8_2:73269543-73269562 Msa1267800:CDS 45.0%
ACAACCCAGTATCAAATGGG+TGG + chr8_2:73269767-73269786 Msa1267800:CDS 45.0%
TGGATCCCACCACTTTATGT+GGG + chr8_2:73270854-73270873 Msa1267800:intron 45.0%
TGGATCCCACATAAAGTGGT+GGG - chr8_2:73270862-73270881 None:intergenic 45.0%
ATGGATCCCACATAAAGTGG+TGG - chr8_2:73270863-73270882 None:intergenic 45.0%
TGGATGCTAACATGCCTCTT+TGG + chr8_2:73270892-73270911 Msa1267800:intron 45.0%
ATCTGCTTTCCCCTAGGTTA+TGG - chr8_2:73270918-73270937 None:intergenic 45.0%
GTGTTATCAACCGCTAATCG+TGG + chr8_2:73271029-73271048 Msa1267800:intron 45.0%
ACCGCTAATCGTGGAAAAAG+TGG + chr8_2:73271038-73271057 Msa1267800:intron 45.0%
CCTATAATGCGACATTCCAG+TGG - chr8_2:73271172-73271191 None:intergenic 45.0%
CCACTGGAATGTCGCATTAT+AGG + chr8_2:73271169-73271188 Msa1267800:intron 45.0%
CAGTAATTATTTGGGGGGTG+GGG + chr8_2:73271260-73271279 Msa1267800:intron 45.0%
AGTAATTATTTGGGGGGTGG+GGG + chr8_2:73271261-73271280 Msa1267800:intron 45.0%
ATCTCTGGCAACAGTGATGT+TGG + chr8_2:73271399-73271418 Msa1267800:CDS 45.0%
GTAGTGATACGATTCCGATC+AGG + chr8_2:73271681-73271700 Msa1267800:CDS 45.0%
ATTGGTTAGCGCGACCAAAT+TGG - chr8_2:73271746-73271765 None:intergenic 45.0%
GTGATTTCAGGACAATAGGC+TGG - chr8_2:73272283-73272302 None:intergenic 45.0%
TACATAAGCTCAGTTCCCAC+TGG - chr8_2:73272329-73272348 None:intergenic 45.0%
GGAACTGAGCTTATGTAGTG+AGG + chr8_2:73272332-73272351 Msa1267800:exon 45.0%
! TGTCTGCCACTTGAAGCATA+TGG - chr8_2:73272383-73272402 None:intergenic 45.0%
!! AAAATAAAATTATATTGAAA+AGG - chr8_2:73272747-73272766 None:intergenic 5.0%
!!! TTTTCAATATAATTTTATTT+TGG + chr8_2:73272746-73272765 Msa1267800:three_prime_UTR 5.0%
GTGTTGGGGTGAATTGACGA+GGG - chr8_2:73269322-73269341 None:intergenic 50.0%
GGCTCTTGAATCCATTCCAC+TGG - chr8_2:73269469-73269488 None:intergenic 50.0%
GAGAAGCGAGATTGGAGCTT+TGG - chr8_2:73269535-73269554 None:intergenic 50.0%
ACTCACACGTACCAACCACT+TGG + chr8_2:73270212-73270231 Msa1267800:intron 50.0%
CTCACACGTACCAACCACTT+GGG + chr8_2:73270213-73270232 Msa1267800:intron 50.0%
CTCTCATGTTCCCAAGTGGT+TGG - chr8_2:73270226-73270245 None:intergenic 50.0%
ATGACCTTGTTGCTCCTGCA+GGG + chr8_2:73270372-73270391 Msa1267800:intron 50.0%
ACGGCATGAGTATAGTGGTC+AGG - chr8_2:73270416-73270435 None:intergenic 50.0%
GTGGATCCCACCACTTTATG+TGG + chr8_2:73270853-73270872 Msa1267800:intron 50.0%
TGCCTCTTTGGCCATAACCT+AGG + chr8_2:73270904-73270923 Msa1267800:intron 50.0%
GCCTCTTTGGCCATAACCTA+GGG + chr8_2:73270905-73270924 Msa1267800:intron 50.0%
CCTCTTTGGCCATAACCTAG+GGG + chr8_2:73270906-73270925 Msa1267800:intron 50.0%
CATAGTTGCTCCTGGGTTCT+AGG + chr8_2:73270972-73270991 Msa1267800:intron 50.0%
AGCAGCTATAGTGGCGCTAT+AGG - chr8_2:73271091-73271110 None:intergenic 50.0%
!! TGAGGGTACCTTAGGTAACC+AGG + chr8_2:73271360-73271379 Msa1267800:CDS 50.0%
ATGTTCCGCCTGGTTACCTA+AGG - chr8_2:73271371-73271390 None:intergenic 50.0%
TTTGGTCGCGCTAACCAATC+TGG + chr8_2:73271747-73271766 Msa1267800:intron 50.0%
GATGACGTCATGCACCAGAT+TGG - chr8_2:73271764-73271783 None:intergenic 50.0%
GACGTCATCTTCTGCAGTTG+AGG + chr8_2:73271775-73271794 Msa1267800:intron 50.0%
! GGTGTTGGGGTGAATTGACG+AGG - chr8_2:73269323-73269342 None:intergenic 55.0%
GCTCCAATCTCGCTTCTCAG+AGG + chr8_2:73269537-73269556 Msa1267800:CDS 55.0%
GATGACCTTGTTGCTCCTGC+AGG + chr8_2:73270371-73270390 Msa1267800:intron 55.0%
CCCCTAGGTTATGGCCAAAG+AGG - chr8_2:73270909-73270928 None:intergenic 55.0%
GGGTACCTTAGGTAACCAGG+CGG + chr8_2:73271363-73271382 Msa1267800:CDS 55.0%
TAACCAGGCGGAACATGCAC+TGG + chr8_2:73271375-73271394 Msa1267800:CDS 55.0%
! GGAACATGCACTGGCATCTC+TGG + chr8_2:73271384-73271403 Msa1267800:CDS 55.0%
TGAGCAGAAACACGCCCTGC+AGG - chr8_2:73270389-73270408 None:intergenic 60.0%
TTATTTGGGGGGTGGGGGTC+TGG + chr8_2:73271266-73271285 Msa1267800:intron 60.0%
TATTTGGGGGGTGGGGGTCT+GGG + chr8_2:73271267-73271286 Msa1267800:intron 60.0%
TGTGGCCAGGAGTTCAGCCA+TGG + chr8_2:73271307-73271326 Msa1267800:intron 60.0%
CCACTCCATGGCTGAACTCC+TGG - chr8_2:73271315-73271334 None:intergenic 60.0%
CCAGGAGTTCAGCCATGGAG+TGG + chr8_2:73271312-73271331 Msa1267800:intron 60.0%
ATGCCAGTGCATGTTCCGCC+TGG - chr8_2:73271381-73271400 None:intergenic 60.0%
CACGCCCTGCAGGAGCAACA+AGG - chr8_2:73270379-73270398 None:intergenic 65.0%
ATTTGGGGGGTGGGGGTCTG+GGG + chr8_2:73271268-73271287 Msa1267800:intron 65.0%
! TGGGGGGTGGGGGTCTGGGG+TGG + chr8_2:73271271-73271290 Msa1267800:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 73269223 73272826 73269223 ID=Msa1267800;Name=Msa1267800
chr8_2 mRNA 73269223 73272826 73269223 ID=Msa1267800-mRNA-1;Parent=Msa1267800;Name=Msa1267800-mRNA-1;_AED=0.24;_eAED=0.24;_QI=52|1|1|1|0.88|0.8|10|407|291
chr8_2 exon 73269223 73269374 73269223 ID=Msa1267800-mRNA-1:exon:24835;Parent=Msa1267800-mRNA-1
chr8_2 exon 73269462 73269564 73269462 ID=Msa1267800-mRNA-1:exon:24836;Parent=Msa1267800-mRNA-1
chr8_2 exon 73269679 73269809 73269679 ID=Msa1267800-mRNA-1:exon:24837;Parent=Msa1267800-mRNA-1
chr8_2 exon 73270393 73270532 73270393 ID=Msa1267800-mRNA-1:exon:24838;Parent=Msa1267800-mRNA-1
chr8_2 exon 73270643 73270711 73270643 ID=Msa1267800-mRNA-1:exon:24839;Parent=Msa1267800-mRNA-1
chr8_2 exon 73271316 73271454 73271316 ID=Msa1267800-mRNA-1:exon:24840;Parent=Msa1267800-mRNA-1
chr8_2 exon 73271640 73271702 73271640 ID=Msa1267800-mRNA-1:exon:24841;Parent=Msa1267800-mRNA-1
chr8_2 exon 73271792 73271835 73271792 ID=Msa1267800-mRNA-1:exon:24842;Parent=Msa1267800-mRNA-1
chr8_2 exon 73272263 73272363 73272263 ID=Msa1267800-mRNA-1:exon:24843;Parent=Msa1267800-mRNA-1
chr8_2 exon 73272434 73272826 73272434 ID=Msa1267800-mRNA-1:exon:24844;Parent=Msa1267800-mRNA-1
chr8_2 five_prime_UTR 73269223 73269274 73269223 ID=Msa1267800-mRNA-1:five_prime_utr;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73269275 73269374 73269275 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73269462 73269564 73269462 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73269679 73269809 73269679 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73270393 73270532 73270393 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73270643 73270711 73270643 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73271316 73271454 73271316 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73271640 73271702 73271640 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73271792 73271835 73271792 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 CDS 73272263 73272349 73272263 ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2 three_prime_UTR 73272350 73272363 73272350 ID=Msa1267800-mRNA-1:three_prime_utr;Parent=Msa1267800-mRNA-1
chr8_2 three_prime_UTR 73272434 73272826 73272434 ID=Msa1267800-mRNA-1:three_prime_utr;Parent=Msa1267800-mRNA-1
Gene Sequence

>Msa1267800

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTTACCTTTACAAGCATGCCAGTGGAATGGATTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTCTCAGAGGAAAAGAAGAAAAGTTGTGGAGCACATTTGTCTGCTAAAAGCAAAGGAGGGATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAGTATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCCGTTTACATGCGGTTTCAGAAAAAGGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGAGTTCAGCCATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCCATGAAAGCTCTAAGGAGTATACTCATGGAGTAGTGATACGATTCCGATCAGTTGAGGCCTTCGAGATATTTATACGCAGCCAAGAATACAAAGATGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTGTCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGCTTATGTAG

Protein sequence

>Msa1267800

MSFAMQCSNYSSFCVPRQFTPTPLSLPLPLPLQACQWNGFKSQPKKNQMRVFCSSDDQSSNLASQRKRRKVVEHICLLKAKEGLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKKENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFRKGEEFSHGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFHESSKEYTHGVVIRFRSVEAFEIFIRSQEYKDVWISKFQPIVLKSLSLHFSVDPVGTELM*