AlfalfaGEDB | Msa1267800

M. sativa cultivar zhongmu-4 / Msa1267800

KEGG: -
GO: -
PFAM: PF07876.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267800	XP_013447005.1	92.977	299	11	2	1	291	1	297	0.0	528

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1267800	0.817056	4.018453e-52	-8.615850e-47
Msa0000220	Msa1267800	0.898873	3.459777e-77	-8.615850e-47
Msa0000610	Msa1267800	0.821302	4.339255e-53	-8.615850e-47
Msa0001040	Msa1267800	0.865225	6.892724e-65	-8.615850e-47
Msa0001510	Msa1267800	0.849667	2.791631e-60	-8.615850e-47
Msa0002060	Msa1267800	0.803852	2.860311e-49	-8.615850e-47
Msa0002110	Msa1267800	0.800518	1.387931e-48	-8.615850e-47
Msa0002690	Msa1267800	0.895270	1.123935e-75	-8.615850e-47
Msa0002700	Msa1267800	0.896091	5.144648e-76	-8.615850e-47
Msa0003340	Msa1267800	0.832386	9.739346e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267800	MtrunA17_Chr8g0386421	92.977	299	11	2	1	291	1	297	0.0	528

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267800	AT2G32500.2	57.721	272	110	3	24	291	6	276	6.79e-109	317
Msa1267800	AT2G32500.1	56.938	209	85	3	24	228	6	213	4.95e-77	234

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Find 79 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTCCTATGGCAATT+GGG	0.428568	8_2:-73272570	None:intergenic
AAAATAAAATTATATTGAAA+AGG	0.440829	8_2:-73272744	None:intergenic
AAAGAATAAACTCCACTCCA+TGG	0.578056	8_2:-73271324	None:intergenic
AAAGGAGGGATTATCTGAAG+AGG	0.627071	8_2:+73269715	Msa1267800:CDS
AAAGGTAAAGATAGAGGTGT+TGG	0.454888	8_2:-73269335	None:intergenic
AAAGGTAAAGGTAAAGATAG+AGG	0.480721	8_2:-73269341	None:intergenic
AAGGTAAAGATAGAGGTGTT+GGG	0.456800	8_2:-73269334	None:intergenic
AATACCACCCATTTGATACT+GGG	0.530236	8_2:-73269771	None:intergenic
AATGAAGAGACAGTGATTTC+AGG	0.265594	8_2:-73272292	None:intergenic
AATGCATTAGCGAGCTAAAA+AGG	0.335331	8_2:+73269225	Msa1267800:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAAAGGTAAAGATAG+AGG	-	chr8_2:73269344-73269363	None:intergenic	30.0%
CATTCTAGATGAAATTCATG+TGG	-	chr8_2:73269940-73269959	None:intergenic	30.0%
TTATATATTTCGCAAAGGAG+AGG	+	chr8_2:73270690-73270709	Msa1267800:CDS	30.0%
TTCTGGATCGATAAATTGAA+GGG	+	chr8_2:73270736-73270755	Msa1267800:intron	30.0%
CAATTCATATTTGACCATAC+AGG	+	chr8_2:73270778-73270797	Msa1267800:intron	30.0%
TCTAACAGTAATTATTTGGG+GGG	+	chr8_2:73271255-73271274	Msa1267800:intron	30.0%
GTAAATTGTACTATCAAGGA+AGG	-	chr8_2:73271430-73271449	None:intergenic	30.0%
AACATGTGAATAAATGTTGG+TGG	-	chr8_2:73271472-73271491	None:intergenic	30.0%
TCCTTACATCTTTGTATTCT+TGG	-	chr8_2:73271823-73271842	None:intergenic	30.0%
TATTTATTCCAAATGCTCAC+AGG	+	chr8_2:73272412-73272431	Msa1267800:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	73269223	73272826	73269223	ID=Msa1267800;Name=Msa1267800
chr8_2	mRNA	73269223	73272826	73269223	ID=Msa1267800-mRNA-1;Parent=Msa1267800;Name=Msa1267800-mRNA-1;_AED=0.24;_eAED=0.24;_QI=52\|1\|1\|1\|0.88\|0.8\|10\|407\|291
chr8_2	exon	73269223	73269374	73269223	ID=Msa1267800-mRNA-1:exon:24835;Parent=Msa1267800-mRNA-1
chr8_2	exon	73269462	73269564	73269462	ID=Msa1267800-mRNA-1:exon:24836;Parent=Msa1267800-mRNA-1
chr8_2	exon	73269679	73269809	73269679	ID=Msa1267800-mRNA-1:exon:24837;Parent=Msa1267800-mRNA-1
chr8_2	exon	73270393	73270532	73270393	ID=Msa1267800-mRNA-1:exon:24838;Parent=Msa1267800-mRNA-1
chr8_2	exon	73270643	73270711	73270643	ID=Msa1267800-mRNA-1:exon:24839;Parent=Msa1267800-mRNA-1
chr8_2	exon	73271316	73271454	73271316	ID=Msa1267800-mRNA-1:exon:24840;Parent=Msa1267800-mRNA-1
chr8_2	exon	73271640	73271702	73271640	ID=Msa1267800-mRNA-1:exon:24841;Parent=Msa1267800-mRNA-1
chr8_2	exon	73271792	73271835	73271792	ID=Msa1267800-mRNA-1:exon:24842;Parent=Msa1267800-mRNA-1
chr8_2	exon	73272263	73272363	73272263	ID=Msa1267800-mRNA-1:exon:24843;Parent=Msa1267800-mRNA-1
chr8_2	exon	73272434	73272826	73272434	ID=Msa1267800-mRNA-1:exon:24844;Parent=Msa1267800-mRNA-1
chr8_2	five_prime_UTR	73269223	73269274	73269223	ID=Msa1267800-mRNA-1:five_prime_utr;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73269275	73269374	73269275	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73269462	73269564	73269462	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73269679	73269809	73269679	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73270393	73270532	73270393	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73270643	73270711	73270643	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73271316	73271454	73271316	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73271640	73271702	73271640	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73271792	73271835	73271792	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	CDS	73272263	73272349	73272263	ID=Msa1267800-mRNA-1:cds;Parent=Msa1267800-mRNA-1
chr8_2	three_prime_UTR	73272350	73272363	73272350	ID=Msa1267800-mRNA-1:three_prime_utr;Parent=Msa1267800-mRNA-1
chr8_2	three_prime_UTR	73272434	73272826	73272434	ID=Msa1267800-mRNA-1:three_prime_utr;Parent=Msa1267800-mRNA-1

Gene Sequence

>Msa1267800

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTTACCTTTACAAGCATGCCAGTGGAATGGATTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTCTCAGAGGAAAAGAAGAAAAGTTGTGGAGCACATTTGTCTGCTAAAAGCAAAGGAGGGATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAGTATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCCGTTTACATGCGGTTTCAGAAAAAGGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGAGTTCAGCCATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCCATGAAAGCTCTAAGGAGTATACTCATGGAGTAGTGATACGATTCCGATCAGTTGAGGCCTTCGAGATATTTATACGCAGCCAAGAATACAAAGATGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTGTCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGCTTATGTAG

Protein sequence

>Msa1267800

MSFAMQCSNYSSFCVPRQFTPTPLSLPLPLPLQACQWNGFKSQPKKNQMRVFCSSDDQSSNLASQRKRRKVVEHICLLKAKEGLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKKENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFRKGEEFSHGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFHESSKEYTHGVVIRFRSVEAFEIFIRSQEYKDVWISKFQPIVLKSLSLHFSVDPVGTELM*