AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0772160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772160 MtrunA17_Chr5g0409821 99.513 411 2 0 1 411 1 411 0.0 851
Msa0772160 MtrunA17_Chr4g0057631 30.645 124 83 2 137 257 90 213 8.13e-13 69.7
Msa0772160 MtrunA17_Chr7g0225691 28.125 160 112 2 137 293 110 269 9.42e-13 69.7
Msa0772160 MtrunA17_Chr6g0457931 36.667 90 56 1 169 257 5 94 1.85e-12 68.2
Msa0772160 MtrunA17_Chr3g0102981 26.752 157 114 1 137 292 105 261 5.54e-12 67.4
Msa0772160 MtrunA17_Chr5g0447081 26.415 159 114 2 137 292 105 263 3.68e-11 64.7
Msa0772160 MtrunA17_Chr4g0037431 25.907 193 112 6 66 253 90 256 4.71e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772160 AT1G32060.1 80.872 413 59 5 1 411 1 395 0.0 679
Msa0772160 AT3G27440.1 24.681 235 154 5 64 293 28 244 1.07e-15 79.0
Msa0772160 AT3G27440.2 24.681 235 154 5 64 293 28 244 1.41e-15 78.6
Msa0772160 AT3G27440.3 25.843 178 129 3 119 293 20 197 1.74e-14 75.1
Msa0772160 AT3G27190.1 33.065 124 80 2 137 257 119 242 3.00e-14 74.7
Msa0772160 AT1G55810.3 25.506 247 145 7 18 257 10 224 3.79e-14 74.3
Msa0772160 AT1G55810.1 25.506 247 145 7 18 257 10 224 3.79e-14 74.3
Msa0772160 AT1G55810.6 25.506 247 145 7 18 257 10 224 3.79e-14 74.3
Msa0772160 AT1G55810.2 25.506 247 145 7 18 257 10 224 3.80e-14 74.3
Msa0772160 AT1G55810.5 25.506 247 145 7 18 257 10 224 4.26e-14 74.3
Msa0772160 AT1G55810.4 25.506 247 145 7 18 257 10 224 4.26e-14 74.3
Msa0772160 AT1G55810.7 26.000 200 124 5 64 257 33 214 9.94e-14 73.2
Msa0772160 AT5G40870.1 28.302 159 111 2 137 292 119 277 4.90e-13 70.9
Msa0772160 AT1G26190.1 26.368 201 109 7 66 257 66 236 8.39e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCAATGACCAAGATTT+TGG 0.150126 5_2:-46310941 None:intergenic
AGTATTTAACACCCTCTTTC+TGG 0.157752 5_2:-46312252 None:intergenic
TTCTCGAGTCAGAGATCTTT+TGG 0.212624 5_2:+46311539 Msa0772160:CDS
TAATCATGTTACTGGTCTTT+TGG 0.213994 5_2:+46310894 Msa0772160:CDS
TTTGGATGATTACCATTCTT+TGG 0.234705 5_2:+46310750 Msa0772160:CDS
AGTGACTTCTCCATAGAATT+TGG 0.257225 5_2:-46313577 None:intergenic
CCTATTTATAATCATGTTAC+TGG 0.259857 5_2:+46310886 Msa0772160:CDS
TTGTTCTCTCTTTCTCTCTA+AGG 0.263380 5_2:-46310368 None:intergenic
TCTTATCTTCAAACCAACTA+TGG 0.263816 5_2:-46313661 None:intergenic
GAAATTTGCTTGGAAAATTC+AGG 0.264484 5_2:+46311596 Msa0772160:CDS
AAGTTGGATAGAGGATTATT+TGG 0.283269 5_2:-46310314 None:intergenic
CCAGTAACATGATTATAAAT+AGG 0.295466 5_2:-46310886 None:intergenic
CCAATATAAGCTTCAAAATC+AGG 0.308836 5_2:-46311792 None:intergenic
GAGTCAGGGTTTCCACCTTT+TGG 0.320180 5_2:-46310691 None:intergenic
TATATATACATACATAATAT+TGG 0.332409 5_2:+46313760 Msa0772160:three_prime_UTR
CATTATCATCTGGAATTAGT+TGG 0.339527 5_2:-46312201 None:intergenic
CCGTCATCAAACAAGTAAAC+TGG 0.339534 5_2:-46312280 None:intergenic
CTGATAAGTGTGTTTGAGTC+AGG 0.348587 5_2:-46310706 None:intergenic
ATGACGGTTCTACAATTTCA+TGG 0.358447 5_2:+46312296 Msa0772160:CDS
ATTGAGATGTTTGTTCTTAG+AGG 0.359760 5_2:-46310436 None:intergenic
TCATTTCCTTTGTAAGTCTC+TGG 0.363648 5_2:-46312376 None:intergenic
AAGAAGAAGTGAGTTTAAGT+TGG 0.366190 5_2:-46310330 None:intergenic
ATCTTTCCTTCATTATCATC+TGG 0.370333 5_2:-46312211 None:intergenic
ATTGGTCTAGCAGCTGATTC+AGG 0.370444 5_2:+46310607 Msa0772160:CDS
TATTAAACCACCCAAAATCT+TGG 0.372303 5_2:+46310930 Msa0772160:CDS
AGTTGGATAGAGGATTATTT+GGG 0.372468 5_2:-46310313 None:intergenic
AACCTCTCTTCCAAATTCTA+TGG 0.381744 5_2:+46313567 Msa0772160:CDS
ATATTCATATGCATGGACTA+TGG 0.386337 5_2:-46314002 None:intergenic
TCTTCAAACCAACTATGGTT+TGG 0.386867 5_2:-46313656 None:intergenic
AGTGAGTTTAAGTTGGATAG+AGG 0.388378 5_2:-46310323 None:intergenic
ATATTATGTATGTATATATA+AGG 0.388663 5_2:-46313757 None:intergenic
CCCAAAATCTTGGTCATTGA+AGG 0.390954 5_2:+46310940 Msa0772160:CDS
TAAGCTTTAGCTGCTCCTAC+TGG 0.408909 5_2:-46313723 None:intergenic
ATTATCATCTGGAATTAGTT+GGG 0.412929 5_2:-46312200 None:intergenic
TGGAAGAGAGGTTGCTTAAG+TGG 0.427841 5_2:-46313557 None:intergenic
TTTGAACAATTTGTCATCAC+TGG 0.433037 5_2:+46313967 Msa0772160:three_prime_UTR
CACAACCACTGTGATATGTT+TGG 0.440482 5_2:+46310732 Msa0772160:CDS
CCTGTTCCATTGTTGCTACC+AGG 0.444673 5_2:-46313627 None:intergenic
TACCATTCTTTGGATAGAAC+TGG 0.449333 5_2:+46310760 Msa0772160:CDS
ATAGGTGTCAGTTGTGGAAA+TGG 0.452646 5_2:+46313491 Msa0772160:intron
TACCAGTTCTATCCAAAGAA+TGG 0.458109 5_2:-46310762 None:intergenic
GCAATGAGGTGAAATTTGCT+TGG 0.466967 5_2:+46311586 Msa0772160:CDS
TCATCTGGAATTAGTTGGGT+TGG 0.467987 5_2:-46312196 None:intergenic
CAAAACAAAGGGAGTTTAGC+AGG 0.468657 5_2:-46310232 None:intergenic
AGATCAAAATCATTAGCTCT+TGG 0.471925 5_2:-46310814 None:intergenic
GGTCTCTTCCAAACCATAGT+TGG 0.473792 5_2:+46313648 Msa0772160:CDS
CCTGGTAGCAACAATGGAAC+AGG 0.476412 5_2:+46313627 Msa0772160:CDS
TTGAGCAGATAGTAGCAAGC+AGG 0.481692 5_2:+46313691 Msa0772160:CDS
AGTAGGAGCAGCTAAAGCTT+AGG 0.484112 5_2:+46313725 Msa0772160:CDS
TTGGGTGGTTTAATAAGCTC+AGG 0.487228 5_2:-46310922 None:intergenic
ACAATAATATTCAGTGAGAA+TGG 0.495990 5_2:+46310387 Msa0772160:exon
CTAGCAGCTGATTCAGGATG+TGG 0.497361 5_2:+46310613 Msa0772160:CDS
TTTGTAAGTCTCTGGTCCAT+AGG 0.514381 5_2:-46312368 None:intergenic
CTCCATAGAATTTGGAAGAG+AGG 0.516431 5_2:-46313569 None:intergenic
TATGTATGTATATATAAGGC+AGG 0.519140 5_2:-46313753 None:intergenic
CCATAGGAAAATTTAATGCC+AGG 0.522813 5_2:-46312352 None:intergenic
AAACTTACATGCTCTTATCC+TGG 0.529194 5_2:+46312334 Msa0772160:CDS
GAACTTTAAATCAAAACAAA+GGG 0.529797 5_2:-46310243 None:intergenic
CCAGTTTACTTGTTTGATGA+CGG 0.531064 5_2:+46312280 Msa0772160:CDS
TACTTGATAACATGTGGAGC+AGG 0.532032 5_2:+46310565 Msa0772160:CDS
CTAATTCCAGATGATAATGA+AGG 0.532317 5_2:+46312205 Msa0772160:CDS
GACTCACAGACAATTGTGAT+TGG 0.537034 5_2:+46310589 Msa0772160:CDS
TGATAAGTGTGTTTGAGTCA+GGG 0.540780 5_2:-46310705 None:intergenic
CTGTTCCATTGTTGCTACCA+GGG 0.541192 5_2:-46313626 None:intergenic
ATGTTGTATTAATAATATAG+AGG 0.542686 5_2:+46313902 Msa0772160:three_prime_UTR
ACAAGTTAAAGCTATTAAAG+AGG 0.546142 5_2:+46310846 Msa0772160:CDS
TGGAACACATAAAATATATG+AGG 0.549816 5_2:-46310268 None:intergenic
GATTTCCCTGGTAGCAACAA+TGG 0.550594 5_2:+46313621 Msa0772160:CDS
AGTGAGGTTGATCCAGAAAG+AGG 0.553461 5_2:+46312240 Msa0772160:CDS
AACATACAATACATGAAATG+TGG 0.565555 5_2:-46313836 None:intergenic
CAAGTTAAAGCTATTAAAGA+GGG 0.566898 5_2:+46310847 Msa0772160:CDS
AGAACTGGTAGAAAAGAGAA+AGG 0.567928 5_2:+46310775 Msa0772160:CDS
GGAACTTTAAATCAAAACAA+AGG 0.576138 5_2:-46310244 None:intergenic
CGTCATCAAACAAGTAAACT+GGG 0.577268 5_2:-46312279 None:intergenic
TGAGCAGATAGTAGCAAGCA+GGG 0.579633 5_2:+46313692 Msa0772160:CDS
TTGAAGCATGCTGATTTCCC+TGG 0.586959 5_2:+46313609 Msa0772160:CDS
CATGTAAGTTTCCTTCCACA+TGG 0.594474 5_2:-46312322 None:intergenic
ACACAGTCTTGAAAGTATCA+AGG 0.597310 5_2:+46311749 Msa0772160:CDS
TTTCATGGATACCATGTGGA+AGG 0.599237 5_2:+46312311 Msa0772160:CDS
GTGAGGTTGATCCAGAAAGA+GGG 0.602515 5_2:+46312241 Msa0772160:CDS
AGAAGATACTTGATAACATG+TGG 0.602583 5_2:+46310559 Msa0772160:CDS
AACACATAAAATATATGAGG+TGG 0.602665 5_2:-46310265 None:intergenic
GGTGGTTTAATAAGCTCAGG+AGG 0.603286 5_2:-46310919 None:intergenic
GCAGCAGAACCTCCAAAAGG+TGG 0.608673 5_2:+46310679 Msa0772160:CDS
GGTGCAGCAGAACCTCCAAA+AGG 0.611239 5_2:+46310676 Msa0772160:CDS
GTGTCAGTTGTGGAAATGGA+TGG 0.614489 5_2:+46313495 Msa0772160:CDS
CAGAGAGACATGGCGGAACG+TGG 0.615135 5_2:+46311726 Msa0772160:intron
AGAGACTTACAAAGGAAATG+AGG 0.618923 5_2:+46312378 Msa0772160:CDS
ACAAATATTTCAGAGAGACA+TGG 0.624789 5_2:+46311716 Msa0772160:intron
TCAAGGCTAGCATTGAAGCA+AGG 0.642202 5_2:+46311766 Msa0772160:CDS
CTACTTAGACATTAGCAATG+AGG 0.647945 5_2:+46311572 Msa0772160:CDS
TGTGCAATAGGTGTCAGTTG+TGG 0.648349 5_2:+46313485 Msa0772160:intron
AGCAGGGCTGAGACTCCAGT+AGG 0.659219 5_2:+46313708 Msa0772160:CDS
ACAATTTCATGGATACCATG+TGG 0.667312 5_2:+46312307 Msa0772160:CDS
TACATACATAATATTGGACA+AGG 0.682019 5_2:+46313766 Msa0772160:three_prime_UTR
TATGGACCAGAGACTTACAA+AGG 0.682242 5_2:+46312370 Msa0772160:CDS
AATATTTCAGAGAGACATGG+CGG 0.751503 5_2:+46311719 Msa0772160:intron
ATCATCCAAACATATCACAG+TGG 0.763501 5_2:-46310737 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATGTATGTATATATA+AGG - chr5_2:46313760-46313779 None:intergenic 10.0%
!! TATATATACATACATAATAT+TGG + chr5_2:46313760-46313779 Msa0772160:three_prime_UTR 10.0%
!!! AAAAATAAGAAAATGATTTT+GGG - chr5_2:46313809-46313828 None:intergenic 10.0%
!!! TGAAACAGATATTTTTTAAA+TGG - chr5_2:46310201-46310220 None:intergenic 15.0%
!!! ATATATTCTAAGAAAAAGTT+TGG - chr5_2:46310291-46310310 None:intergenic 15.0%
!! CAATCATAAAAAAATAGATA+AGG - chr5_2:46311314-46311333 None:intergenic 15.0%
!! ATATTTGTCAAAAAATTGTT+AGG - chr5_2:46311704-46311723 None:intergenic 15.0%
!! TATAAATCTACAGTAAATAA+TGG + chr5_2:46312510-46312529 Msa0772160:intron 15.0%
!! TTCTATTAGTTATTATCTAA+AGG - chr5_2:46312638-46312657 None:intergenic 15.0%
!! TCAGTTTAAAAAACAATTAT+AGG + chr5_2:46313233-46313252 Msa0772160:intron 15.0%
!! CAGTTTAAAAAACAATTATA+GGG + chr5_2:46313234-46313253 Msa0772160:intron 15.0%
!! AGTTTAAAAAACAATTATAG+GGG + chr5_2:46313235-46313254 Msa0772160:intron 15.0%
!!! TATTTGCTATAGTTTTATAA+AGG - chr5_2:46313400-46313419 None:intergenic 15.0%
!!! TTTTTAAATTTTTGTGCAAT+AGG + chr5_2:46313473-46313492 Msa0772160:intron 15.0%
!!! CAAAAATAAGAAAATGATTT+TGG - chr5_2:46313810-46313829 None:intergenic 15.0%
!! ATGTTGTATTAATAATATAG+AGG + chr5_2:46313902-46313921 Msa0772160:three_prime_UTR 15.0%
!! AAAAAAAATATTCATATGCA+TGG - chr5_2:46314012-46314031 None:intergenic 15.0%
!!! GTAAACAACAATTTTGATTT+TGG - chr5_2:46310179-46310198 None:intergenic 20.0%
!! GAACTTTAAATCAAAACAAA+GGG - chr5_2:46310246-46310265 None:intergenic 20.0%
!!! TTGAATTTTATCTAGTAAGA+TGG - chr5_2:46311013-46311032 None:intergenic 20.0%
!! ATAAAATTCAAAATTAGCGA+CGG + chr5_2:46311022-46311041 Msa0772160:intron 20.0%
!!! ACATTAGACATTTTTATCTA+TGG - chr5_2:46311167-46311186 None:intergenic 20.0%
!!! TCTATTTTTTTATGATTGTG+TGG + chr5_2:46311316-46311335 Msa0772160:intron 20.0%
!!! ATTTTACTATAGAGTAACAA+TGG - chr5_2:46311411-46311430 None:intergenic 20.0%
!! AAAACTTATGCAATTCTATA+AGG + chr5_2:46311648-46311667 Msa0772160:intron 20.0%
!! TACTTGTACAAATTATTCAT+TGG + chr5_2:46312084-46312103 Msa0772160:intron 20.0%
!! ATTGAAATCAAATAGTTGAT+TGG - chr5_2:46312430-46312449 None:intergenic 20.0%
!! CTGTAGATTTATAATTAAAC+TGG - chr5_2:46312554-46312573 None:intergenic 20.0%
!! TAAATATGTCACATTGTTAA+AGG + chr5_2:46312583-46312602 Msa0772160:intron 20.0%
!! AATAACACAATTACCAATTA+GGG + chr5_2:46312850-46312869 Msa0772160:intron 20.0%
!! AATGTAAAGTTACTTATGTT+TGG + chr5_2:46312954-46312973 Msa0772160:intron 20.0%
!! AGTTTCCTTCAAAAAAAAAA+TGG + chr5_2:46312996-46313015 Msa0772160:intron 20.0%
!! GTTTCCTTCAAAAAAAAAAT+GGG + chr5_2:46312997-46313016 Msa0772160:intron 20.0%
!!! ATTTCCCATTTTTTTTTTGA+AGG - chr5_2:46313004-46313023 None:intergenic 20.0%
!!! TCAAAAACAGTTTCTTTTTA+TGG + chr5_2:46313113-46313132 Msa0772160:intron 20.0%
!!! GACACAAAAGTTAAATATTT+TGG - chr5_2:46313441-46313460 None:intergenic 20.0%
! GGAACTTTAAATCAAAACAA+AGG - chr5_2:46310247-46310266 None:intergenic 25.0%
! AACACATAAAATATATGAGG+TGG - chr5_2:46310268-46310287 None:intergenic 25.0%
! TGGAACACATAAAATATATG+AGG - chr5_2:46310271-46310290 None:intergenic 25.0%
! ACAATAATATTCAGTGAGAA+TGG + chr5_2:46310387-46310406 Msa0772160:exon 25.0%
!!! TGTTGGTTTTAATCAAAAAC+AGG + chr5_2:46310480-46310499 Msa0772160:CDS 25.0%
! ACAAGTTAAAGCTATTAAAG+AGG + chr5_2:46310846-46310865 Msa0772160:CDS 25.0%
! CAAGTTAAAGCTATTAAAGA+GGG + chr5_2:46310847-46310866 Msa0772160:CDS 25.0%
! CCAGTAACATGATTATAAAT+AGG - chr5_2:46310889-46310908 None:intergenic 25.0%
! CCTATTTATAATCATGTTAC+TGG + chr5_2:46310886-46310905 Msa0772160:CDS 25.0%
! GCATAGATATTACTTACATT+GGG - chr5_2:46310972-46310991 None:intergenic 25.0%
! AGCATAGATATTACTTACAT+TGG - chr5_2:46310973-46310992 None:intergenic 25.0%
! TTCATCACTAATGATATTAG+AGG - chr5_2:46311077-46311096 None:intergenic 25.0%
! AAAATAGATAGTTCAATCCA+TGG + chr5_2:46311426-46311445 Msa0772160:intron 25.0%
!! CTAAAAAGATTTTATGTCCA+TGG - chr5_2:46311446-46311465 None:intergenic 25.0%
!!! GACATAAAATCTTTTTAGCT+TGG + chr5_2:46311448-46311467 Msa0772160:intron 25.0%
! AAATTAATAATCAAGGTGAG+TGG - chr5_2:46311491-46311510 None:intergenic 25.0%
! ACGTCTCAAATTAATAATCA+AGG - chr5_2:46311498-46311517 None:intergenic 25.0%
! AAAAAATTGTTAGGCCAAAA+TGG - chr5_2:46311695-46311714 None:intergenic 25.0%
!! TTTAAGATTTCCTTTCTTTC+AGG - chr5_2:46311839-46311858 None:intergenic 25.0%
! ACATCTTAGATCAAAATTGT+TGG - chr5_2:46311942-46311961 None:intergenic 25.0%
! AAAGTGAATTATCAAATCAG+CGG - chr5_2:46312064-46312083 None:intergenic 25.0%
!! ATTATCATCTGGAATTAGTT+GGG - chr5_2:46312203-46312222 None:intergenic 25.0%
! TAGTTGATTGGATATTTGAA+GGG - chr5_2:46312418-46312437 None:intergenic 25.0%
! ATAGTTGATTGGATATTTGA+AGG - chr5_2:46312419-46312438 None:intergenic 25.0%
! AAATCTACAGTAAATAATGG+TGG + chr5_2:46312513-46312532 Msa0772160:intron 25.0%
! TTTATTTACCGACATTACAT+TGG + chr5_2:46312671-46312690 Msa0772160:intron 25.0%
! TCGATGATTAATCTATGATA+GGG - chr5_2:46312802-46312821 None:intergenic 25.0%
! CAATAACACAATTACCAATT+AGG + chr5_2:46312849-46312868 Msa0772160:intron 25.0%
!! TTGAGAGAATATTTTGCTTT+AGG + chr5_2:46312896-46312915 Msa0772160:intron 25.0%
!! CTTTTTATGTTATGCTTAAC+CGG + chr5_2:46313145-46313164 Msa0772160:intron 25.0%
!! ATTAACTTGAAGCTTGATTA+TGG - chr5_2:46313269-46313288 None:intergenic 25.0%
! TATGTATGTATATATAAGGC+AGG - chr5_2:46313756-46313775 None:intergenic 25.0%
! TACATACATAATATTGGACA+AGG + chr5_2:46313766-46313785 Msa0772160:three_prime_UTR 25.0%
! AACATACAATACATGAAATG+TGG - chr5_2:46313839-46313858 None:intergenic 25.0%
AGTTGGATAGAGGATTATTT+GGG - chr5_2:46310316-46310335 None:intergenic 30.0%
AAGTTGGATAGAGGATTATT+TGG - chr5_2:46310317-46310336 None:intergenic 30.0%
AAGAAGAAGTGAGTTTAAGT+TGG - chr5_2:46310333-46310352 None:intergenic 30.0%
ATTGAGATGTTTGTTCTTAG+AGG - chr5_2:46310439-46310458 None:intergenic 30.0%
!!! ACATGTGTTTTTGATGATGT+TGG - chr5_2:46310463-46310482 None:intergenic 30.0%
ACATCATCAAAAACACATGT+TGG + chr5_2:46310463-46310482 Msa0772160:CDS 30.0%
! AGAAGATACTTGATAACATG+TGG + chr5_2:46310559-46310578 Msa0772160:CDS 30.0%
TTTGGATGATTACCATTCTT+TGG + chr5_2:46310750-46310769 Msa0772160:CDS 30.0%
! AGATCAAAATCATTAGCTCT+TGG - chr5_2:46310817-46310836 None:intergenic 30.0%
!!! TAATCATGTTACTGGTCTTT+TGG + chr5_2:46310894-46310913 Msa0772160:CDS 30.0%
TATTAAACCACCCAAAATCT+TGG + chr5_2:46310930-46310949 Msa0772160:CDS 30.0%
AATCTTGAGAATCAAGATGT+GGG + chr5_2:46311243-46311262 Msa0772160:intron 30.0%
! TTTTTATGATTGTGTGGACA+AGG + chr5_2:46311322-46311341 Msa0772160:intron 30.0%
TCAATCTTCCTTAATGTATG+TGG + chr5_2:46311362-46311381 Msa0772160:intron 30.0%
! GAAATTTGCTTGGAAAATTC+AGG + chr5_2:46311596-46311615 Msa0772160:CDS 30.0%
CTTATGCAATTCTATAAGGT+TGG + chr5_2:46311652-46311671 Msa0772160:intron 30.0%
! TTTATGCTTCTCATCCATTT+TGG + chr5_2:46311678-46311697 Msa0772160:intron 30.0%
ACAAATATTTCAGAGAGACA+TGG + chr5_2:46311716-46311735 Msa0772160:intron 30.0%
CCAATATAAGCTTCAAAATC+AGG - chr5_2:46311795-46311814 None:intergenic 30.0%
!!! CCTGATTTTGAAGCTTATAT+TGG + chr5_2:46311792-46311811 Msa0772160:CDS 30.0%
TCTTAGATCAAAATTGTTGG+TGG - chr5_2:46311939-46311958 None:intergenic 30.0%
! CATTATCATCTGGAATTAGT+TGG - chr5_2:46312204-46312223 None:intergenic 30.0%
! CTAATTCCAGATGATAATGA+AGG + chr5_2:46312205-46312224 Msa0772160:CDS 30.0%
ATCTTTCCTTCATTATCATC+TGG - chr5_2:46312214-46312233 None:intergenic 30.0%
!! AAGGAAAGATTTTAAGAGTG+AGG + chr5_2:46312224-46312243 Msa0772160:CDS 30.0%
! AACAAACTAGCTTGAATTTG+TGG - chr5_2:46312465-46312484 None:intergenic 30.0%
GAATCTCTTAAGCAATATCT+TGG + chr5_2:46312713-46312732 Msa0772160:intron 30.0%
TTAATCTATGATAGGGAACA+TGG - chr5_2:46312795-46312814 None:intergenic 30.0%
GTCGATGATTAATCTATGAT+AGG - chr5_2:46312803-46312822 None:intergenic 30.0%
AGATTAATCATCGACAAAGT+CGG + chr5_2:46312808-46312827 Msa0772160:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr5_2:46313045-46313064 Msa0772160:intron 30.0%
CGGTTAAGCATAACATAAAA+AGG - chr5_2:46313147-46313166 None:intergenic 30.0%
AAGGAACAAAAACACAAGTT+TGG - chr5_2:46313381-46313400 None:intergenic 30.0%
TCTTATCTTCAAACCAACTA+TGG - chr5_2:46313664-46313683 None:intergenic 30.0%
!!! TGATTTTGGGATAGAATTCA+AGG - chr5_2:46313796-46313815 None:intergenic 30.0%
TAATATAGAGGAGAAAAAGC+AGG + chr5_2:46313914-46313933 Msa0772160:three_prime_UTR 30.0%
TTTGAACAATTTGTCATCAC+TGG + chr5_2:46313967-46313986 Msa0772160:three_prime_UTR 30.0%
! ATATTCATATGCATGGACTA+TGG - chr5_2:46314005-46314024 None:intergenic 30.0%
!! AGTGAGTTTAAGTTGGATAG+AGG - chr5_2:46310326-46310345 None:intergenic 35.0%
TTGTTCTCTCTTTCTCTCTA+AGG - chr5_2:46310371-46310390 None:intergenic 35.0%
! TCTTCTGTTGTTGCTCTTTT+TGG - chr5_2:46310524-46310543 None:intergenic 35.0%
! AGAAGACTCACAAGTGTTTT+TGG + chr5_2:46310652-46310671 Msa0772160:CDS 35.0%
TGATAAGTGTGTTTGAGTCA+GGG - chr5_2:46310708-46310727 None:intergenic 35.0%
ATCATCCAAACATATCACAG+TGG - chr5_2:46310740-46310759 None:intergenic 35.0%
TACCATTCTTTGGATAGAAC+TGG + chr5_2:46310760-46310779 Msa0772160:CDS 35.0%
TACCAGTTCTATCCAAAGAA+TGG - chr5_2:46310765-46310784 None:intergenic 35.0%
AGAACTGGTAGAAAAGAGAA+AGG + chr5_2:46310775-46310794 Msa0772160:CDS 35.0%
! CCTTCAATGACCAAGATTTT+GGG - chr5_2:46310943-46310962 None:intergenic 35.0%
! ACCTTCAATGACCAAGATTT+TGG - chr5_2:46310944-46310963 None:intergenic 35.0%
GAATCTTGAGAATCAAGATG+TGG + chr5_2:46311242-46311261 Msa0772160:intron 35.0%
ATCTTGAGAATCAAGATGTG+GGG + chr5_2:46311244-46311263 Msa0772160:intron 35.0%
TTGTTGGTCCACATACATTA+AGG - chr5_2:46311373-46311392 None:intergenic 35.0%
CTACTTAGACATTAGCAATG+AGG + chr5_2:46311572-46311591 Msa0772160:CDS 35.0%
AATATTTCAGAGAGACATGG+CGG + chr5_2:46311719-46311738 Msa0772160:intron 35.0%
!! ACACAGTCTTGAAAGTATCA+AGG + chr5_2:46311749-46311768 Msa0772160:CDS 35.0%
ATTTCCTTTCTTTCAGGAGT+TGG - chr5_2:46311833-46311852 None:intergenic 35.0%
TCGTCTTTAGCAATTTACGA+CGG + chr5_2:46311879-46311898 Msa0772160:intron 35.0%
AATCGTTTGCGTCTATGTAT+CGG + chr5_2:46312009-46312028 Msa0772160:intron 35.0%
AGTATTTAACACCCTCTTTC+TGG - chr5_2:46312255-46312274 None:intergenic 35.0%
CGTCATCAAACAAGTAAACT+GGG - chr5_2:46312282-46312301 None:intergenic 35.0%
CCAGTTTACTTGTTTGATGA+CGG + chr5_2:46312280-46312299 Msa0772160:CDS 35.0%
ATGACGGTTCTACAATTTCA+TGG + chr5_2:46312296-46312315 Msa0772160:CDS 35.0%
ACAATTTCATGGATACCATG+TGG + chr5_2:46312307-46312326 Msa0772160:CDS 35.0%
AAACTTACATGCTCTTATCC+TGG + chr5_2:46312334-46312353 Msa0772160:CDS 35.0%
CCATAGGAAAATTTAATGCC+AGG - chr5_2:46312355-46312374 None:intergenic 35.0%
! CCTGGCATTAAATTTTCCTA+TGG + chr5_2:46312352-46312371 Msa0772160:CDS 35.0%
TCATTTCCTTTGTAAGTCTC+TGG - chr5_2:46312379-46312398 None:intergenic 35.0%
AGAGACTTACAAAGGAAATG+AGG + chr5_2:46312378-46312397 Msa0772160:CDS 35.0%
CTAAAGGAAATAGCTCAACT+TGG - chr5_2:46312622-46312641 None:intergenic 35.0%
!! TTGGATTTTAGCCATGTAGA+TGG + chr5_2:46312732-46312751 Msa0772160:intron 35.0%
!! TGGATTTTAGCCATGTAGAT+GGG + chr5_2:46312733-46312752 Msa0772160:intron 35.0%
! CCATATTTTTCCCATCTACA+TGG - chr5_2:46312746-46312765 None:intergenic 35.0%
CCATGTAGATGGGAAAAATA+TGG + chr5_2:46312743-46312762 Msa0772160:intron 35.0%
AACCTCTCTTCCAAATTCTA+TGG + chr5_2:46313567-46313586 Msa0772160:CDS 35.0%
AGTGACTTCTCCATAGAATT+TGG - chr5_2:46313580-46313599 None:intergenic 35.0%
TCTTCAAACCAACTATGGTT+TGG - chr5_2:46313659-46313678 None:intergenic 35.0%
!!! TTTTGGTTCTTAACTGTGCG+AGG - chr5_2:46310162-46310181 None:intergenic 40.0%
CAAAACAAAGGGAGTTTAGC+AGG - chr5_2:46310235-46310254 None:intergenic 40.0%
! TACTTGATAACATGTGGAGC+AGG + chr5_2:46310565-46310584 Msa0772160:CDS 40.0%
GACTCACAGACAATTGTGAT+TGG + chr5_2:46310589-46310608 Msa0772160:CDS 40.0%
!!! AGACTCACAAGTGTTTTTGG+AGG + chr5_2:46310655-46310674 Msa0772160:CDS 40.0%
CTGATAAGTGTGTTTGAGTC+AGG - chr5_2:46310709-46310728 None:intergenic 40.0%
CACAACCACTGTGATATGTT+TGG + chr5_2:46310732-46310751 Msa0772160:CDS 40.0%
TTGGGTGGTTTAATAAGCTC+AGG - chr5_2:46310925-46310944 None:intergenic 40.0%
! TCAATGACCAAGATTTTGGG+TGG - chr5_2:46310940-46310959 None:intergenic 40.0%
CCCAAAATCTTGGTCATTGA+AGG + chr5_2:46310940-46310959 Msa0772160:CDS 40.0%
TAGCGACGGAAATTTAGAGA+CGG + chr5_2:46311036-46311055 Msa0772160:intron 40.0%
GAGAATCATACCTACATGCA+TGG - chr5_2:46311524-46311543 None:intergenic 40.0%
! TTCTCGAGTCAGAGATCTTT+TGG + chr5_2:46311539-46311558 Msa0772160:CDS 40.0%
! GCAATGAGGTGAAATTTGCT+TGG + chr5_2:46311586-46311605 Msa0772160:CDS 40.0%
GATTCCAACTCCTGAAAGAA+AGG + chr5_2:46311826-46311845 Msa0772160:intron 40.0%
!! GCATCTGCATATTGCTTTTG+TGG - chr5_2:46312160-46312179 None:intergenic 40.0%
! TCATCTGGAATTAGTTGGGT+TGG - chr5_2:46312199-46312218 None:intergenic 40.0%
CCGTCATCAAACAAGTAAAC+TGG - chr5_2:46312283-46312302 None:intergenic 40.0%
TTTCATGGATACCATGTGGA+AGG + chr5_2:46312311-46312330 Msa0772160:CDS 40.0%
CATGTAAGTTTCCTTCCACA+TGG - chr5_2:46312325-46312344 None:intergenic 40.0%
TTTGTAAGTCTCTGGTCCAT+AGG - chr5_2:46312371-46312390 None:intergenic 40.0%
TATGGACCAGAGACTTACAA+AGG + chr5_2:46312370-46312389 Msa0772160:CDS 40.0%
CACTAGGACCAATGTAATGT+CGG - chr5_2:46312682-46312701 None:intergenic 40.0%
! GATTCGAGTTCAATTCCACT+AGG - chr5_2:46312698-46312717 None:intergenic 40.0%
TCTATGATAGGGAACATGGT+TGG - chr5_2:46312791-46312810 None:intergenic 40.0%
TAATCATCGACAAAGTCGGT+TGG + chr5_2:46312812-46312831 Msa0772160:intron 40.0%
!!! TTTTTTTGGGTCCTGCTAAC+CGG - chr5_2:46313184-46313203 None:intergenic 40.0%
! AGCAAATTCAATTCGACTCG+AGG + chr5_2:46313298-46313317 Msa0772160:intron 40.0%
ATAGGTGTCAGTTGTGGAAA+TGG + chr5_2:46313491-46313510 Msa0772160:intron 40.0%
CTCCATAGAATTTGGAAGAG+AGG - chr5_2:46313572-46313591 None:intergenic 40.0%
! ATTGGTCTAGCAGCTGATTC+AGG + chr5_2:46310607-46310626 Msa0772160:CDS 45.0%
GGTGGTTTAATAAGCTCAGG+AGG - chr5_2:46310922-46310941 None:intergenic 45.0%
! GAGACGTTTTCCATGCATGT+AGG + chr5_2:46311511-46311530 Msa0772160:intron 45.0%
! TCAAGGCTAGCATTGAAGCA+AGG + chr5_2:46311766-46311785 Msa0772160:CDS 45.0%
! AGTGAGGTTGATCCAGAAAG+AGG + chr5_2:46312240-46312259 Msa0772160:CDS 45.0%
! GTGAGGTTGATCCAGAAAGA+GGG + chr5_2:46312241-46312260 Msa0772160:CDS 45.0%
CGACATTACATTGGTCCTAG+TGG + chr5_2:46312680-46312699 Msa0772160:intron 45.0%
GTTGAAGACTCCACCAAACT+TGG + chr5_2:46312765-46312784 Msa0772160:intron 45.0%
GAGCTTGAAGTAGCCCTAAT+TGG - chr5_2:46312866-46312885 None:intergenic 45.0%
TGTGCAATAGGTGTCAGTTG+TGG + chr5_2:46313485-46313504 Msa0772160:intron 45.0%
GTGTCAGTTGTGGAAATGGA+TGG + chr5_2:46313495-46313514 Msa0772160:CDS 45.0%
TGGAAGAGAGGTTGCTTAAG+TGG - chr5_2:46313560-46313579 None:intergenic 45.0%
!! TTGAAGCATGCTGATTTCCC+TGG + chr5_2:46313609-46313628 Msa0772160:CDS 45.0%
GATTTCCCTGGTAGCAACAA+TGG + chr5_2:46313621-46313640 Msa0772160:CDS 45.0%
CTGTTCCATTGTTGCTACCA+GGG - chr5_2:46313629-46313648 None:intergenic 45.0%
GGTCTCTTCCAAACCATAGT+TGG + chr5_2:46313648-46313667 Msa0772160:CDS 45.0%
TTGAGCAGATAGTAGCAAGC+AGG + chr5_2:46313691-46313710 Msa0772160:CDS 45.0%
TGAGCAGATAGTAGCAAGCA+GGG + chr5_2:46313692-46313711 Msa0772160:CDS 45.0%
! TAAGCTTTAGCTGCTCCTAC+TGG - chr5_2:46313726-46313745 None:intergenic 45.0%
AGTAGGAGCAGCTAAAGCTT+AGG + chr5_2:46313725-46313744 Msa0772160:CDS 45.0%
!!! CTTTTATATTAATTTTTTTT+GGG - chr5_2:46313197-46313216 None:intergenic 5.0%
!!! ACTTTTATATTAATTTTTTT+TGG - chr5_2:46313198-46313217 None:intergenic 5.0%
! CTAGCAGCTGATTCAGGATG+TGG + chr5_2:46310613-46310632 Msa0772160:CDS 50.0%
! TCAGGGTTTCCACCTTTTGG+AGG - chr5_2:46310691-46310710 None:intergenic 50.0%
! GAGTCAGGGTTTCCACCTTT+TGG - chr5_2:46310694-46310713 None:intergenic 50.0%
GACCAACAACATGCACACGT+GGG + chr5_2:46311384-46311403 Msa0772160:intron 50.0%
!! GGAAGCATCGTTGCAGATAC+TGG - chr5_2:46312043-46312062 None:intergenic 50.0%
! ACATGGTTGGCCAAGTTTGG+TGG - chr5_2:46312778-46312797 None:intergenic 50.0%
! GGAACATGGTTGGCCAAGTT+TGG - chr5_2:46312781-46312800 None:intergenic 50.0%
CATCGACAAAGTCGGTTGGT+AGG + chr5_2:46312816-46312835 Msa0772160:intron 50.0%
CATATCCTTAACCAGTGCCC+CGG - chr5_2:46313041-46313060 None:intergenic 50.0%
CCTGTTCCATTGTTGCTACC+AGG - chr5_2:46313630-46313649 None:intergenic 50.0%
CCTGGTAGCAACAATGGAAC+AGG + chr5_2:46313627-46313646 Msa0772160:CDS 50.0%
GGTGCAGCAGAACCTCCAAA+AGG + chr5_2:46310676-46310695 Msa0772160:CDS 55.0%
GCAGCAGAACCTCCAAAAGG+TGG + chr5_2:46310679-46310698 Msa0772160:CDS 55.0%
GGACCAACAACATGCACACG+TGG + chr5_2:46311383-46311402 Msa0772160:intron 55.0%
GACCCACGTGTGCATGTTGT+TGG - chr5_2:46311389-46311408 None:intergenic 55.0%
GATGTGTCTCACGACGCATG+TGG + chr5_2:46311957-46311976 Msa0772160:intron 55.0%
GAAATGCTAACCGCTGCCTC+CGG + chr5_2:46313019-46313038 Msa0772160:intron 55.0%
AAATGCTAACCGCTGCCTCC+GGG + chr5_2:46313020-46313039 Msa0772160:intron 55.0%
GTTATGCTTAACCGGTGCCC+CGG + chr5_2:46313153-46313172 Msa0772160:intron 55.0%
TTATGCTTAACCGGTGCCCC+GGG + chr5_2:46313154-46313173 Msa0772160:intron 55.0%
! CAGAGAGACATGGCGGAACG+TGG + chr5_2:46311726-46311745 Msa0772160:intron 60.0%
AATGCTAACCGCTGCCTCCG+GGG + chr5_2:46313021-46313040 Msa0772160:intron 60.0%
ATCCTTAACCAGTGCCCCGG+AGG - chr5_2:46313038-46313057 None:intergenic 60.0%
TATGCTTAACCGGTGCCCCG+GGG + chr5_2:46313155-46313174 Msa0772160:intron 60.0%
AGCAGGGCTGAGACTCCAGT+AGG + chr5_2:46313708-46313727 Msa0772160:CDS 60.0%
!! TGCCTCCGGGGCACTGGTTA+AGG + chr5_2:46313033-46313052 Msa0772160:intron 65.0%
TCCTGCTAACCGGTGTCCCC+GGG - chr5_2:46313174-46313193 None:intergenic 65.0%
GTCCTGCTAACCGGTGTCCC+CGG - chr5_2:46313175-46313194 None:intergenic 65.0%
AACCAGTGCCCCGGAGGCAG+CGG - chr5_2:46313032-46313051 None:intergenic 70.0%
CCTGCTAACCGGTGTCCCCG+GGG - chr5_2:46313173-46313192 None:intergenic 70.0%
AACCGCTGCCTCCGGGGCAC+TGG + chr5_2:46313027-46313046 Msa0772160:intron 75.0%
AACCGGTGCCCCGGGGACAC+CGG + chr5_2:46313162-46313181 Msa0772160:intron 75.0%
AACCGGTGTCCCCGGGGCAC+CGG - chr5_2:46313167-46313186 None:intergenic 75.0%
! CCCCGGGGACACCGGTTAGC+AGG + chr5_2:46313170-46313189 Msa0772160:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 46310145 46314040 46310145 ID=Msa0772160;Name=Msa0772160
chr5_2 mRNA 46310145 46314040 46310145 ID=Msa0772160-mRNA-1;Parent=Msa0772160;Name=Msa0772160-mRNA-1;_AED=0.17;_eAED=0.17;_QI=261|1|1|1|1|1|5|294|411
chr5_2 exon 46310145 46310974 46310145 ID=Msa0772160-mRNA-1:exon:13875;Parent=Msa0772160-mRNA-1
chr5_2 exon 46311533 46311617 46311533 ID=Msa0772160-mRNA-1:exon:13876;Parent=Msa0772160-mRNA-1
chr5_2 exon 46311729 46311813 46311729 ID=Msa0772160-mRNA-1:exon:13877;Parent=Msa0772160-mRNA-1
chr5_2 exon 46312155 46312399 46312155 ID=Msa0772160-mRNA-1:exon:13878;Parent=Msa0772160-mRNA-1
chr5_2 exon 46313495 46314040 46313495 ID=Msa0772160-mRNA-1:exon:13879;Parent=Msa0772160-mRNA-1
chr5_2 five_prime_UTR 46310145 46310405 46310145 ID=Msa0772160-mRNA-1:five_prime_utr;Parent=Msa0772160-mRNA-1
chr5_2 CDS 46310406 46310974 46310406 ID=Msa0772160-mRNA-1:cds;Parent=Msa0772160-mRNA-1
chr5_2 CDS 46311533 46311617 46311533 ID=Msa0772160-mRNA-1:cds;Parent=Msa0772160-mRNA-1
chr5_2 CDS 46311729 46311813 46311729 ID=Msa0772160-mRNA-1:cds;Parent=Msa0772160-mRNA-1
chr5_2 CDS 46312155 46312399 46312155 ID=Msa0772160-mRNA-1:cds;Parent=Msa0772160-mRNA-1
chr5_2 CDS 46313495 46313746 46313495 ID=Msa0772160-mRNA-1:cds;Parent=Msa0772160-mRNA-1
chr5_2 three_prime_UTR 46313747 46314040 46313747 ID=Msa0772160-mRNA-1:three_prime_utr;Parent=Msa0772160-mRNA-1
Gene Sequence

>Msa0772160

ATGGCAGCATGTACTGTCTACTCAACACAACCTCTAAGAACAAACATCTCAATTCCAACATCATCAAAAACACATGTTGGTTTTAATCAAAAACAGGTAGTGTTCTACACAACAACCAAAAAGAGCAACAACAGAAGAACTAACAGTAACAACAGAAGATACTTGATAACATGTGGAGCAGGTGACTCACAGACAATTGTGATTGGTCTAGCAGCTGATTCAGGATGTGGAAAAAGTACTTTCATGAGAAGACTCACAAGTGTTTTTGGAGGTGCAGCAGAACCTCCAAAAGGTGGAAACCCTGACTCAAACACACTTATCAGTGACACAACCACTGTGATATGTTTGGATGATTACCATTCTTTGGATAGAACTGGTAGAAAAGAGAAAGGTGTTACTGCACTTGATCCAAGAGCTAATGATTTTGATCTTATGTATGAACAAGTTAAAGCTATTAAAGAGGGTATTTCTGTTCAAAAACCTATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCACCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGATTCTCGAGTCAGAGATCTTTTGGACTTCAGTATCTACTTAGACATTAGCAATGAGGTGAAATTTGCTTGGAAAATTCAGAGAGACATGGCGGAACGTGGACACAGTCTTGAAAGTATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGAAGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTAATTCCAGATGATAATGAAGGAAAGATTTTAAGAGTGAGGTTGATCCAGAAAGAGGGTGTTAAATACTTTAGCCCAGTTTACTTGTTTGATGACGGTTCTACAATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTATCCTGGCATTAAATTTTCCTATGGACCAGAGACTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGACTAGATGAACTAATATATGTTGAGAGCCACTTAAGCAACCTCTCTTCCAAATTCTATGGAGAAGTCACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGACTCCAGTAGGAGCAGCTAAAGCTTAG

Protein sequence

>Msa0772160

MAACTVYSTQPLRTNISIPTSSKTHVGFNQKQVVFYTTTKKSNNRRTNSNNRRYLITCGAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFSYGPETYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA*