AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374610 MtrunA17_Chr8g0347631 87.736 212 11 2 1 197 1 212 5.90e-127 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374610 AT2G04039.1 62.658 158 53 3 44 196 42 198 2.47e-54 172
Msa1374610 AT2G04039.2 75.926 108 25 1 90 196 57 164 4.40e-54 170
Msa1374610 AT2G04039.3 56.881 109 41 3 44 147 42 149 1.68e-24 95.9

Find 44 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTACTGTTGCTGCTTT+TGG 0.124923 tig0019561:-58203 None:intergenic
AAGGCAACCCCTATTCATTT+TGG 0.130826 tig0019561:+59341 Msa1374610:CDS
CTTCAAAACTTATTGTCTTT+TGG 0.181488 tig0019561:+59559 Msa1374610:CDS
TTCTTTCCCACAGGAATTAC+AGG 0.261997 tig0019561:+59367 Msa1374610:CDS
TCTAATATTGCTTTCAATGA+AGG 0.341804 tig0019561:-58284 None:intergenic
CTCATTGACTATGTGGTATA+TGG 0.382028 tig0019561:+59704 Msa1374610:three_prime_UTR
AAGAAGGCCCAAAATGAATA+GGG 0.412873 tig0019561:-59349 None:intergenic
AAAGAAGGCCCAAAATGAAT+AGG 0.419642 tig0019561:-59350 None:intergenic
GGCTTAGCTGGAGCTTTAGC+AGG 0.433823 tig0019561:-58230 None:intergenic
CACGTTTGTTGATGAATGCC+CGG 0.446871 tig0019561:+59781 Msa1374610:three_prime_UTR
TTCTTCTCATCAACTAGAAA+CGG 0.449513 tig0019561:-59531 None:intergenic
CTCCTCCATCATCTGAGGTA+AGG 0.455147 tig0019561:-58252 None:intergenic
AATATCAGAGAGATCTTGTT+GGG 0.459022 tig0019561:-58309 None:intergenic
TTGCTAAGAGGTGGAGCACT+TGG 0.471802 tig0019561:+57491 Msa1374610:CDS
CACAAGGGATTATTCCTGTA+TGG 0.477768 tig0019561:+59601 Msa1374610:CDS
AAAACACAGAAGAATGCAAA+TGG 0.496803 tig0019561:+57463 None:intergenic
GAGAATCAATCTTTCCATAC+AGG 0.504256 tig0019561:-59615 None:intergenic
TGTGCTTGAACAGGTCCAAA+GGG 0.506399 tig0019561:+59465 Msa1374610:intron
TTTAGCTACTGCTGAAACAA+AGG 0.509101 tig0019561:+58160 Msa1374610:intron
TGTAATTCCTGTGGGAAAGA+AGG 0.510749 tig0019561:-59365 None:intergenic
AAAAGCAGCAACAGTAAAGA+AGG 0.515492 tig0019561:+58205 Msa1374610:CDS
GATGACAGAGAAAACCCCTT+TGG 0.524451 tig0019561:-59480 None:intergenic
CAATATCAGAGAGATCTTGT+TGG 0.526999 tig0019561:-58310 None:intergenic
ACGTTTGTTGATGAATGCCC+GGG 0.529352 tig0019561:+59782 Msa1374610:three_prime_UTR
TCCTCCATCATCTGAGGTAA+GGG 0.531229 tig0019561:-58251 None:intergenic
AGATCTCTCTGATATTGAGC+TGG 0.533275 tig0019561:+58316 Msa1374610:CDS
TCTCTGTCATCTTACAACTC+AGG 0.533545 tig0019561:+59492 Msa1374610:CDS
ACCTTGACTCATTGACTATG+TGG 0.544780 tig0019561:+59697 Msa1374610:three_prime_UTR
TAAGCCCTTACCTCAGATGA+TGG 0.552759 tig0019561:+58247 Msa1374610:CDS
TATTATGATTAACAGTTGGA+AGG 0.560411 tig0019561:+59304 Msa1374610:intron
ATGTGCTTGAACAGGTCCAA+AGG 0.565480 tig0019561:+59464 Msa1374610:intron
TTGGGAGACATGCAAAGAAG+AGG 0.578806 tig0019561:-57549 None:intergenic
TACTGCTGAAACAAAGGAGG+AGG 0.583102 tig0019561:+58166 Msa1374610:CDS
GTACGAAATAATCACAAACC+CGG 0.590236 tig0019561:-59800 None:intergenic
TACATACCTGTAATTCCTGT+GGG 0.591415 tig0019561:-59373 None:intergenic
CTTACCTCAGATGATGGAGG+AGG 0.618521 tig0019561:+58253 Msa1374610:CDS
GTACATACCTGTAATTCCTG+TGG 0.624066 tig0019561:-59374 None:intergenic
AGCTACTGCTGAAACAAAGG+AGG 0.625682 tig0019561:+58163 Msa1374610:intron
TACGAAATAATCACAAACCC+GGG 0.631214 tig0019561:-59799 None:intergenic
ACATCCTCCTCCATCATCTG+AGG 0.640524 tig0019561:-58257 None:intergenic
ACCACATAGTCAATGAGTCA+AGG 0.642220 tig0019561:-59698 None:intergenic
GCCCTTACCTCAGATGATGG+AGG 0.648548 tig0019561:+58250 Msa1374610:CDS
AGAAGGCCCAAAATGAATAG+GGG 0.671714 tig0019561:-59348 None:intergenic
GTGCTTGAACAGGTCCAAAG+GGG 0.694256 tig0019561:+59466 Msa1374610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTTAGTTTAAT+TGG + tig0019561:57910-57929 Msa1374610:intron 10.0%
!!! TTTTATTTTGTTAGTTTAAT+TGG + tig0019561:57910-57929 Msa1374610:intron 10.0%
!! ATATCTTTACAAATATCTAT+GGG - tig0019561:57988-58007 None:intergenic 15.0%
!! AATATCTTTACAAATATCTA+TGG - tig0019561:57989-58008 None:intergenic 15.0%
!!! GATATTTGTAAAGATATTTT+AGG + tig0019561:57991-58010 Msa1374610:intron 15.0%
!!! TTAGCTTGATTTTATAAAAT+CGG + tig0019561:58712-58731 Msa1374610:intron 15.0%
!!! TTATGTTTAGATTTTATTTG+TGG + tig0019561:58751-58770 Msa1374610:intron 15.0%
!!! TTTATTTTTCAACTATTTTG+AGG - tig0019561:59188-59207 None:intergenic 15.0%
!! TCAAAATAGTTGAAAAATAA+AGG + tig0019561:59187-59206 Msa1374610:intron 15.0%
!! ATATCTTTACAAATATCTAT+GGG - tig0019561:57988-58007 None:intergenic 15.0%
!! AATATCTTTACAAATATCTA+TGG - tig0019561:57989-58008 None:intergenic 15.0%
!!! GATATTTGTAAAGATATTTT+AGG + tig0019561:57991-58010 Msa1374610:intron 15.0%
!!! TTAGCTTGATTTTATAAAAT+CGG + tig0019561:58712-58731 Msa1374610:intron 15.0%
!!! TTATGTTTAGATTTTATTTG+TGG + tig0019561:58751-58770 Msa1374610:intron 15.0%
!!! TTTATTTTTCAACTATTTTG+AGG - tig0019561:59188-59207 None:intergenic 15.0%
!! TCAAAATAGTTGAAAAATAA+AGG + tig0019561:59187-59206 Msa1374610:intron 15.0%
!! AATGAACATAATCAAAACTT+TGG + tig0019561:57882-57901 Msa1374610:intron 20.0%
!! TGTGATGTAATTAAAATTTG+TGG + tig0019561:58136-58155 Msa1374610:intron 20.0%
!! TTCAAAATAGCATTCAAAAT+AGG - tig0019561:58459-58478 None:intergenic 20.0%
!!! AAAGTGAACAACTATAATTT+TGG - tig0019561:58514-58533 None:intergenic 20.0%
!! AAATTATAGTTGTTCACTTT+CGG + tig0019561:58514-58533 Msa1374610:intron 20.0%
!! TACAATTTCAAATAATTCCA+CGG + tig0019561:59089-59108 Msa1374610:intron 20.0%
!! TTGATATTATGATTAACAGT+TGG + tig0019561:59300-59319 Msa1374610:intron 20.0%
!!! TTCAAAACTTATTGTCTTTT+GGG + tig0019561:59560-59579 Msa1374610:CDS 20.0%
!!! TCGTATACAAATTTTCATTT+TGG + tig0019561:59636-59655 Msa1374610:three_prime_UTR 20.0%
!! AATGAACATAATCAAAACTT+TGG + tig0019561:57882-57901 Msa1374610:intron 20.0%
!! TGTGATGTAATTAAAATTTG+TGG + tig0019561:58136-58155 Msa1374610:intron 20.0%
!! TTCAAAATAGCATTCAAAAT+AGG - tig0019561:58459-58478 None:intergenic 20.0%
!!! AAAGTGAACAACTATAATTT+TGG - tig0019561:58514-58533 None:intergenic 20.0%
!! AAATTATAGTTGTTCACTTT+CGG + tig0019561:58514-58533 Msa1374610:intron 20.0%
!! TACAATTTCAAATAATTCCA+CGG + tig0019561:59089-59108 Msa1374610:intron 20.0%
!! TTGATATTATGATTAACAGT+TGG + tig0019561:59300-59319 Msa1374610:intron 20.0%
!!! TTCAAAACTTATTGTCTTTT+GGG + tig0019561:59560-59579 Msa1374610:CDS 20.0%
!!! TCGTATACAAATTTTCATTT+TGG + tig0019561:59636-59655 Msa1374610:three_prime_UTR 20.0%
! ACATAATCAAAACTTTGGTT+TGG + tig0019561:57887-57906 Msa1374610:intron 25.0%
! AAATCAGTTAGACTATTTAG+TGG - tig0019561:58108-58127 None:intergenic 25.0%
! TCTAATATTGCTTTCAATGA+AGG - tig0019561:58287-58306 None:intergenic 25.0%
! AAAGAGAGTAATTTGAACAA+TGG - tig0019561:58386-58405 None:intergenic 25.0%
!!! TTGAATGCTATTTTGAAGTA+AGG + tig0019561:58462-58481 Msa1374610:intron 25.0%
!!! CTATAATTTTGGCGTTAAAT+TGG - tig0019561:58503-58522 None:intergenic 25.0%
!! AGCTAATTTTATATCACAGT+TGG - tig0019561:58698-58717 None:intergenic 25.0%
!!! GACCATAAACTTTTACTTTT+AGG + tig0019561:59032-59051 Msa1374610:intron 25.0%
! CTCCTAAAAGTAAAAGTTTA+TGG - tig0019561:59037-59056 None:intergenic 25.0%
! TTATCAAGAGCTTCAAATTA+TGG + tig0019561:59248-59267 Msa1374610:intron 25.0%
! TATTATGATTAACAGTTGGA+AGG + tig0019561:59304-59323 Msa1374610:intron 25.0%
!! CTTCAAAACTTATTGTCTTT+TGG + tig0019561:59559-59578 Msa1374610:CDS 25.0%
! ACATAATCAAAACTTTGGTT+TGG + tig0019561:57887-57906 Msa1374610:intron 25.0%
! AAATCAGTTAGACTATTTAG+TGG - tig0019561:58108-58127 None:intergenic 25.0%
! TCTAATATTGCTTTCAATGA+AGG - tig0019561:58287-58306 None:intergenic 25.0%
! AAAGAGAGTAATTTGAACAA+TGG - tig0019561:58386-58405 None:intergenic 25.0%
!!! TTGAATGCTATTTTGAAGTA+AGG + tig0019561:58462-58481 Msa1374610:intron 25.0%
!!! CTATAATTTTGGCGTTAAAT+TGG - tig0019561:58503-58522 None:intergenic 25.0%
!! AGCTAATTTTATATCACAGT+TGG - tig0019561:58698-58717 None:intergenic 25.0%
!!! GACCATAAACTTTTACTTTT+AGG + tig0019561:59032-59051 Msa1374610:intron 25.0%
! CTCCTAAAAGTAAAAGTTTA+TGG - tig0019561:59037-59056 None:intergenic 25.0%
! TTATCAAGAGCTTCAAATTA+TGG + tig0019561:59248-59267 Msa1374610:intron 25.0%
! TATTATGATTAACAGTTGGA+AGG + tig0019561:59304-59323 Msa1374610:intron 25.0%
!! CTTCAAAACTTATTGTCTTT+TGG + tig0019561:59559-59578 Msa1374610:CDS 25.0%
! GTTGGGTATGATAACATTTT+GGG - tig0019561:57570-57589 None:intergenic 30.0%
! AGTTGGGTATGATAACATTT+TGG - tig0019561:57571-57590 None:intergenic 30.0%
CATAAATTGAGACATACCAA+AGG - tig0019561:57614-57633 None:intergenic 30.0%
! TCACACTGATTAAGTATGAT+TGG + tig0019561:58018-58037 Msa1374610:intron 30.0%
AATATCAGAGAGATCTTGTT+GGG - tig0019561:58312-58331 None:intergenic 30.0%
TTAGAAGTGATCAAACAAGT+TGG + tig0019561:58571-58590 Msa1374610:intron 30.0%
!! AAAATCGGTTTGAAGTGAAA+CGG + tig0019561:58727-58746 Msa1374610:intron 30.0%
!!! TGAAACATGGTTTTGTTAGA+AGG - tig0019561:59163-59182 None:intergenic 30.0%
!! CTATTTTGAGGATTGAAACA+TGG - tig0019561:59176-59195 None:intergenic 30.0%
TTCTTCTCATCAACTAGAAA+CGG - tig0019561:59534-59553 None:intergenic 30.0%
! GTTGGGTATGATAACATTTT+GGG - tig0019561:57570-57589 None:intergenic 30.0%
! AGTTGGGTATGATAACATTT+TGG - tig0019561:57571-57590 None:intergenic 30.0%
CATAAATTGAGACATACCAA+AGG - tig0019561:57614-57633 None:intergenic 30.0%
! TCACACTGATTAAGTATGAT+TGG + tig0019561:58018-58037 Msa1374610:intron 30.0%
AATATCAGAGAGATCTTGTT+GGG - tig0019561:58312-58331 None:intergenic 30.0%
TTAGAAGTGATCAAACAAGT+TGG + tig0019561:58571-58590 Msa1374610:intron 30.0%
!! AAAATCGGTTTGAAGTGAAA+CGG + tig0019561:58727-58746 Msa1374610:intron 30.0%
!!! TGAAACATGGTTTTGTTAGA+AGG - tig0019561:59163-59182 None:intergenic 30.0%
!! CTATTTTGAGGATTGAAACA+TGG - tig0019561:59176-59195 None:intergenic 30.0%
TTCTTCTCATCAACTAGAAA+CGG - tig0019561:59534-59553 None:intergenic 30.0%
!! ATTGGTGATGATGTTGAGTT+GGG - tig0019561:57587-57606 None:intergenic 35.0%
!! TATTGGTGATGATGTTGAGT+TGG - tig0019561:57588-57607 None:intergenic 35.0%
ATCATCACCAATACTACCTT+TGG + tig0019561:57595-57614 Msa1374610:intron 35.0%
AGACATACCAAAGGTAGTAT+TGG - tig0019561:57605-57624 None:intergenic 35.0%
TTTAGCTACTGCTGAAACAA+AGG + tig0019561:58160-58179 Msa1374610:intron 35.0%
!!! TTCTTTACTGTTGCTGCTTT+TGG - tig0019561:58206-58225 None:intergenic 35.0%
AAAAGCAGCAACAGTAAAGA+AGG + tig0019561:58205-58224 Msa1374610:CDS 35.0%
CAATATCAGAGAGATCTTGT+TGG - tig0019561:58313-58332 None:intergenic 35.0%
!!! TGATATTGAGCTGGTTTTTC+AGG + tig0019561:58325-58344 Msa1374610:CDS 35.0%
! CTATATAACAAGGTACCCTA+TGG + tig0019561:58433-58452 Msa1374610:intron 35.0%
AGCATTCAAAATAGGCCATA+GGG - tig0019561:58451-58470 None:intergenic 35.0%
TAGCATTCAAAATAGGCCAT+AGG - tig0019561:58452-58471 None:intergenic 35.0%
!! ACACATACTTAGGGCATTTT+AGG - tig0019561:58660-58679 None:intergenic 35.0%
AAATGCCCTAAGTATGTGTT+TGG + tig0019561:58661-58680 Msa1374610:intron 35.0%
CTTGTCCAAACACATACTTA+GGG - tig0019561:58669-58688 None:intergenic 35.0%
ACTTGTCCAAACACATACTT+AGG - tig0019561:58670-58689 None:intergenic 35.0%
CTATGGATCACTTATCAAGA+TGG - tig0019561:58793-58812 None:intergenic 35.0%
TCTTGATAAGTGATCCATAG+TGG + tig0019561:58793-58812 Msa1374610:intron 35.0%
AAGTCATTGTCTTAGTTGTG+AGG - tig0019561:58894-58913 None:intergenic 35.0%
AAGCAATGACAAACACATAC+TGG + tig0019561:58934-58953 Msa1374610:intron 35.0%
! CATCTGAGATAATGACCAAT+TGG - tig0019561:58999-59018 None:intergenic 35.0%
! GAAGGTTCCTTTCTGAAAAA+AGG + tig0019561:59322-59341 Msa1374610:CDS 35.0%
AAGAAGGCCCAAAATGAATA+GGG - tig0019561:59352-59371 None:intergenic 35.0%
AAAGAAGGCCCAAAATGAAT+AGG - tig0019561:59353-59372 None:intergenic 35.0%
TACATACCTGTAATTCCTGT+GGG - tig0019561:59376-59395 None:intergenic 35.0%
GGAATTGCTTTCTTAATAGC+AGG - tig0019561:59408-59427 None:intergenic 35.0%
CATTTAACTCGATGTAAGTG+AGG - tig0019561:59429-59448 None:intergenic 35.0%
TAACAACTATGTGCTTGAAC+AGG + tig0019561:59456-59475 Msa1374610:intron 35.0%
!!! CTTTTGGGTTGAAAAACGTT+TGG + tig0019561:59575-59594 Msa1374610:CDS 35.0%
GAGAATCAATCTTTCCATAC+AGG - tig0019561:59618-59637 None:intergenic 35.0%
! CTCATTGACTATGTGGTATA+TGG + tig0019561:59704-59723 Msa1374610:three_prime_UTR 35.0%
!! ATTGGTGATGATGTTGAGTT+GGG - tig0019561:57587-57606 None:intergenic 35.0%
!! TATTGGTGATGATGTTGAGT+TGG - tig0019561:57588-57607 None:intergenic 35.0%
ATCATCACCAATACTACCTT+TGG + tig0019561:57595-57614 Msa1374610:intron 35.0%
AGACATACCAAAGGTAGTAT+TGG - tig0019561:57605-57624 None:intergenic 35.0%
TTTAGCTACTGCTGAAACAA+AGG + tig0019561:58160-58179 Msa1374610:intron 35.0%
!!! TTCTTTACTGTTGCTGCTTT+TGG - tig0019561:58206-58225 None:intergenic 35.0%
AAAAGCAGCAACAGTAAAGA+AGG + tig0019561:58205-58224 Msa1374610:CDS 35.0%
CAATATCAGAGAGATCTTGT+TGG - tig0019561:58313-58332 None:intergenic 35.0%
!!! TGATATTGAGCTGGTTTTTC+AGG + tig0019561:58325-58344 Msa1374610:CDS 35.0%
! CTATATAACAAGGTACCCTA+TGG + tig0019561:58433-58452 Msa1374610:intron 35.0%
AGCATTCAAAATAGGCCATA+GGG - tig0019561:58451-58470 None:intergenic 35.0%
TAGCATTCAAAATAGGCCAT+AGG - tig0019561:58452-58471 None:intergenic 35.0%
!! ACACATACTTAGGGCATTTT+AGG - tig0019561:58660-58679 None:intergenic 35.0%
AAATGCCCTAAGTATGTGTT+TGG + tig0019561:58661-58680 Msa1374610:intron 35.0%
CTTGTCCAAACACATACTTA+GGG - tig0019561:58669-58688 None:intergenic 35.0%
ACTTGTCCAAACACATACTT+AGG - tig0019561:58670-58689 None:intergenic 35.0%
CTATGGATCACTTATCAAGA+TGG - tig0019561:58793-58812 None:intergenic 35.0%
TCTTGATAAGTGATCCATAG+TGG + tig0019561:58793-58812 Msa1374610:intron 35.0%
AAGTCATTGTCTTAGTTGTG+AGG - tig0019561:58894-58913 None:intergenic 35.0%
AAGCAATGACAAACACATAC+TGG + tig0019561:58934-58953 Msa1374610:intron 35.0%
! CATCTGAGATAATGACCAAT+TGG - tig0019561:58999-59018 None:intergenic 35.0%
! GAAGGTTCCTTTCTGAAAAA+AGG + tig0019561:59322-59341 Msa1374610:CDS 35.0%
AAGAAGGCCCAAAATGAATA+GGG - tig0019561:59352-59371 None:intergenic 35.0%
AAAGAAGGCCCAAAATGAAT+AGG - tig0019561:59353-59372 None:intergenic 35.0%
TACATACCTGTAATTCCTGT+GGG - tig0019561:59376-59395 None:intergenic 35.0%
GGAATTGCTTTCTTAATAGC+AGG - tig0019561:59408-59427 None:intergenic 35.0%
CATTTAACTCGATGTAAGTG+AGG - tig0019561:59429-59448 None:intergenic 35.0%
TAACAACTATGTGCTTGAAC+AGG + tig0019561:59456-59475 Msa1374610:intron 35.0%
!!! CTTTTGGGTTGAAAAACGTT+TGG + tig0019561:59575-59594 Msa1374610:CDS 35.0%
GAGAATCAATCTTTCCATAC+AGG - tig0019561:59618-59637 None:intergenic 35.0%
! CTCATTGACTATGTGGTATA+TGG + tig0019561:59704-59723 Msa1374610:three_prime_UTR 35.0%
! CAAATGGCACTTTTGCTAAG+AGG + tig0019561:57479-57498 Msa1374610:CDS 40.0%
AGATCTCTCTGATATTGAGC+TGG + tig0019561:58316-58335 Msa1374610:CDS 40.0%
!!! GCTGGTTTTTCAGGACAATA+AGG + tig0019561:58334-58353 Msa1374610:CDS 40.0%
TGATTGCGAATTTGCGATCT+CGG + tig0019561:58410-58429 Msa1374610:intron 40.0%
!! ATAAGTGATCCATAGTGGAC+TGG + tig0019561:58798-58817 Msa1374610:intron 40.0%
! GATCTTCTACTTCTGAAGGA+CGG - tig0019561:58857-58876 None:intergenic 40.0%
CCTTCAGAAGTAGAAGATCA+CGG + tig0019561:58858-58877 Msa1374610:intron 40.0%
TCTTAGTTGTGAGGATGAAG+AGG - tig0019561:58885-58904 None:intergenic 40.0%
TTTGCCTAACTGACACCAAT+TGG + tig0019561:58981-59000 Msa1374610:intron 40.0%
!! ATGACCAATTGGTGTCAGTT+AGG - tig0019561:58988-59007 None:intergenic 40.0%
GAAGTAACGTAAGTCATCAC+TGG + tig0019561:59059-59078 Msa1374610:intron 40.0%
! GCTTTTGATGCAACTGAATG+AGG - tig0019561:59126-59145 None:intergenic 40.0%
! AAGGCAACCCCTATTCATTT+TGG + tig0019561:59341-59360 Msa1374610:CDS 40.0%
! AGGCAACCCCTATTCATTTT+GGG + tig0019561:59342-59361 Msa1374610:CDS 40.0%
AGAAGGCCCAAAATGAATAG+GGG - tig0019561:59351-59370 None:intergenic 40.0%
TGTAATTCCTGTGGGAAAGA+AGG - tig0019561:59368-59387 None:intergenic 40.0%
TTCTTTCCCACAGGAATTAC+AGG + tig0019561:59367-59386 Msa1374610:CDS 40.0%
GTACATACCTGTAATTCCTG+TGG - tig0019561:59377-59396 None:intergenic 40.0%
TCTCTGTCATCTTACAACTC+AGG + tig0019561:59492-59511 Msa1374610:CDS 40.0%
AAAAACGTTTGGCAGCACAA+GGG + tig0019561:59586-59605 Msa1374610:CDS 40.0%
CACAAGGGATTATTCCTGTA+TGG + tig0019561:59601-59620 Msa1374610:CDS 40.0%
! ACCTTGACTCATTGACTATG+TGG + tig0019561:59697-59716 Msa1374610:three_prime_UTR 40.0%
ACCACATAGTCAATGAGTCA+AGG - tig0019561:59701-59720 None:intergenic 40.0%
! CAAATGGCACTTTTGCTAAG+AGG + tig0019561:57479-57498 Msa1374610:CDS 40.0%
AGATCTCTCTGATATTGAGC+TGG + tig0019561:58316-58335 Msa1374610:CDS 40.0%
!!! GCTGGTTTTTCAGGACAATA+AGG + tig0019561:58334-58353 Msa1374610:CDS 40.0%
TGATTGCGAATTTGCGATCT+CGG + tig0019561:58410-58429 Msa1374610:intron 40.0%
!! ATAAGTGATCCATAGTGGAC+TGG + tig0019561:58798-58817 Msa1374610:intron 40.0%
! GATCTTCTACTTCTGAAGGA+CGG - tig0019561:58857-58876 None:intergenic 40.0%
CCTTCAGAAGTAGAAGATCA+CGG + tig0019561:58858-58877 Msa1374610:intron 40.0%
TCTTAGTTGTGAGGATGAAG+AGG - tig0019561:58885-58904 None:intergenic 40.0%
TTTGCCTAACTGACACCAAT+TGG + tig0019561:58981-59000 Msa1374610:intron 40.0%
!! ATGACCAATTGGTGTCAGTT+AGG - tig0019561:58988-59007 None:intergenic 40.0%
GAAGTAACGTAAGTCATCAC+TGG + tig0019561:59059-59078 Msa1374610:intron 40.0%
! GCTTTTGATGCAACTGAATG+AGG - tig0019561:59126-59145 None:intergenic 40.0%
! AAGGCAACCCCTATTCATTT+TGG + tig0019561:59341-59360 Msa1374610:CDS 40.0%
! AGGCAACCCCTATTCATTTT+GGG + tig0019561:59342-59361 Msa1374610:CDS 40.0%
AGAAGGCCCAAAATGAATAG+GGG - tig0019561:59351-59370 None:intergenic 40.0%
TGTAATTCCTGTGGGAAAGA+AGG - tig0019561:59368-59387 None:intergenic 40.0%
TTCTTTCCCACAGGAATTAC+AGG + tig0019561:59367-59386 Msa1374610:CDS 40.0%
GTACATACCTGTAATTCCTG+TGG - tig0019561:59377-59396 None:intergenic 40.0%
TCTCTGTCATCTTACAACTC+AGG + tig0019561:59492-59511 Msa1374610:CDS 40.0%
AAAAACGTTTGGCAGCACAA+GGG + tig0019561:59586-59605 Msa1374610:CDS 40.0%
CACAAGGGATTATTCCTGTA+TGG + tig0019561:59601-59620 Msa1374610:CDS 40.0%
! ACCTTGACTCATTGACTATG+TGG + tig0019561:59697-59716 Msa1374610:three_prime_UTR 40.0%
ACCACATAGTCAATGAGTCA+AGG - tig0019561:59701-59720 None:intergenic 40.0%
! ATGGCACTTTTGCTAAGAGG+TGG + tig0019561:57482-57501 Msa1374610:CDS 45.0%
TTGGGAGACATGCAAAGAAG+AGG - tig0019561:57552-57571 None:intergenic 45.0%
AGCTACTGCTGAAACAAAGG+AGG + tig0019561:58163-58182 Msa1374610:intron 45.0%
TACTGCTGAAACAAAGGAGG+AGG + tig0019561:58166-58185 Msa1374610:CDS 45.0%
TAAGCCCTTACCTCAGATGA+TGG + tig0019561:58247-58266 Msa1374610:CDS 45.0%
! TCCTCCATCATCTGAGGTAA+GGG - tig0019561:58254-58273 None:intergenic 45.0%
GCGATCTCGGCTATATAACA+AGG + tig0019561:58423-58442 Msa1374610:intron 45.0%
TGAGAAGTTGAGAGCTCCAA+AGG + tig0019561:58610-58629 Msa1374610:intron 45.0%
GAGAAGTTGAGAGCTCCAAA+GGG + tig0019561:58611-58630 Msa1374610:intron 45.0%
AGAAGTTGAGAGCTCCAAAG+GGG + tig0019561:58612-58631 Msa1374610:intron 45.0%
! TTTCAAGTGCCAGTCCACTA+TGG - tig0019561:58810-58829 None:intergenic 45.0%
CCGTGATCTTCTACTTCTGA+AGG - tig0019561:58861-58880 None:intergenic 45.0%
!!! GGGGTTGCCTTTTTTCAGAA+AGG - tig0019561:59332-59351 None:intergenic 45.0%
ATGTGCTTGAACAGGTCCAA+AGG + tig0019561:59464-59483 Msa1374610:intron 45.0%
TGTGCTTGAACAGGTCCAAA+GGG + tig0019561:59465-59484 Msa1374610:intron 45.0%
GATGACAGAGAAAACCCCTT+TGG - tig0019561:59483-59502 None:intergenic 45.0%
GAAAAACGTTTGGCAGCACA+AGG + tig0019561:59585-59604 Msa1374610:CDS 45.0%
! CACGTTTGTTGATGAATGCC+CGG + tig0019561:59781-59800 Msa1374610:three_prime_UTR 45.0%
! ACGTTTGTTGATGAATGCCC+GGG + tig0019561:59782-59801 Msa1374610:three_prime_UTR 45.0%
! ATGGCACTTTTGCTAAGAGG+TGG + tig0019561:57482-57501 Msa1374610:CDS 45.0%
TTGGGAGACATGCAAAGAAG+AGG - tig0019561:57552-57571 None:intergenic 45.0%
AGCTACTGCTGAAACAAAGG+AGG + tig0019561:58163-58182 Msa1374610:intron 45.0%
TACTGCTGAAACAAAGGAGG+AGG + tig0019561:58166-58185 Msa1374610:CDS 45.0%
TAAGCCCTTACCTCAGATGA+TGG + tig0019561:58247-58266 Msa1374610:CDS 45.0%
! TCCTCCATCATCTGAGGTAA+GGG - tig0019561:58254-58273 None:intergenic 45.0%
GCGATCTCGGCTATATAACA+AGG + tig0019561:58423-58442 Msa1374610:intron 45.0%
TGAGAAGTTGAGAGCTCCAA+AGG + tig0019561:58610-58629 Msa1374610:intron 45.0%
GAGAAGTTGAGAGCTCCAAA+GGG + tig0019561:58611-58630 Msa1374610:intron 45.0%
AGAAGTTGAGAGCTCCAAAG+GGG + tig0019561:58612-58631 Msa1374610:intron 45.0%
! TTTCAAGTGCCAGTCCACTA+TGG - tig0019561:58810-58829 None:intergenic 45.0%
CCGTGATCTTCTACTTCTGA+AGG - tig0019561:58861-58880 None:intergenic 45.0%
!!! GGGGTTGCCTTTTTTCAGAA+AGG - tig0019561:59332-59351 None:intergenic 45.0%
ATGTGCTTGAACAGGTCCAA+AGG + tig0019561:59464-59483 Msa1374610:intron 45.0%
TGTGCTTGAACAGGTCCAAA+GGG + tig0019561:59465-59484 Msa1374610:intron 45.0%
GATGACAGAGAAAACCCCTT+TGG - tig0019561:59483-59502 None:intergenic 45.0%
GAAAAACGTTTGGCAGCACA+AGG + tig0019561:59585-59604 Msa1374610:CDS 45.0%
! CACGTTTGTTGATGAATGCC+CGG + tig0019561:59781-59800 Msa1374610:three_prime_UTR 45.0%
! ACGTTTGTTGATGAATGCCC+GGG + tig0019561:59782-59801 Msa1374610:three_prime_UTR 45.0%
! TTGCTAAGAGGTGGAGCACT+TGG + tig0019561:57491-57510 Msa1374610:CDS 50.0%
! ATCTGAGGTAAGGGCTTAGC+TGG - tig0019561:58245-58264 None:intergenic 50.0%
! CTCCTCCATCATCTGAGGTA+AGG - tig0019561:58255-58274 None:intergenic 50.0%
!! CTTACCTCAGATGATGGAGG+AGG + tig0019561:58253-58272 Msa1374610:CDS 50.0%
ACATCCTCCTCCATCATCTG+AGG - tig0019561:58260-58279 None:intergenic 50.0%
GAAGTTGAGAGCTCCAAAGG+GGG + tig0019561:58613-58632 Msa1374610:intron 50.0%
TTTGAGCTCCTAACCCCCTT+TGG - tig0019561:58629-58648 None:intergenic 50.0%
ATGAGGCAACTTCTACACCG+TGG - tig0019561:59109-59128 None:intergenic 50.0%
! TTTTGGGCCTTCTTTCCCAC+AGG + tig0019561:59358-59377 Msa1374610:CDS 50.0%
GTGCTTGAACAGGTCCAAAG+GGG + tig0019561:59466-59485 Msa1374610:intron 50.0%
! TTGCTAAGAGGTGGAGCACT+TGG + tig0019561:57491-57510 Msa1374610:CDS 50.0%
! ATCTGAGGTAAGGGCTTAGC+TGG - tig0019561:58245-58264 None:intergenic 50.0%
! CTCCTCCATCATCTGAGGTA+AGG - tig0019561:58255-58274 None:intergenic 50.0%
!! CTTACCTCAGATGATGGAGG+AGG + tig0019561:58253-58272 Msa1374610:CDS 50.0%
ACATCCTCCTCCATCATCTG+AGG - tig0019561:58260-58279 None:intergenic 50.0%
GAAGTTGAGAGCTCCAAAGG+GGG + tig0019561:58613-58632 Msa1374610:intron 50.0%
TTTGAGCTCCTAACCCCCTT+TGG - tig0019561:58629-58648 None:intergenic 50.0%
ATGAGGCAACTTCTACACCG+TGG - tig0019561:59109-59128 None:intergenic 50.0%
! TTTTGGGCCTTCTTTCCCAC+AGG + tig0019561:59358-59377 Msa1374610:CDS 50.0%
GTGCTTGAACAGGTCCAAAG+GGG + tig0019561:59466-59485 Msa1374610:intron 50.0%
! GGCTTAGCTGGAGCTTTAGC+AGG - tig0019561:58233-58252 None:intergenic 55.0%
! GCCCTTACCTCAGATGATGG+AGG + tig0019561:58250-58269 Msa1374610:CDS 55.0%
TGAGAGCTCCAAAGGGGGTT+AGG + tig0019561:58618-58637 Msa1374610:intron 55.0%
TCTGAAGGACGGAGAGTCGT+TGG - tig0019561:58846-58865 None:intergenic 55.0%
! GGCTTAGCTGGAGCTTTAGC+AGG - tig0019561:58233-58252 None:intergenic 55.0%
! GCCCTTACCTCAGATGATGG+AGG + tig0019561:58250-58269 Msa1374610:CDS 55.0%
TGAGAGCTCCAAAGGGGGTT+AGG + tig0019561:58618-58637 Msa1374610:intron 55.0%
TCTGAAGGACGGAGAGTCGT+TGG - tig0019561:58846-58865 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0019561 gene 57476 59819 57476 ID=Msa1374610;Name=Msa1374610
tig0019561 mRNA 57476 59819 57476 ID=Msa1374610-mRNA-1;Parent=Msa1374610;Name=Msa1374610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.8|1|0.75|0.8|5|187|197
tig0019561 exon 57476 57574 57476 ID=Msa1374610-mRNA-1:exon:3983;Parent=Msa1374610-mRNA-1
tig0019561 exon 57792 57870 57792 ID=Msa1374610-mRNA-1:exon:3984;Parent=Msa1374610-mRNA-1
tig0019561 exon 58165 58355 58165 ID=Msa1374610-mRNA-1:exon:3985;Parent=Msa1374610-mRNA-1
tig0019561 exon 59319 59388 59319 ID=Msa1374610-mRNA-1:exon:3986;Parent=Msa1374610-mRNA-1
tig0019561 exon 59478 59819 59478 ID=Msa1374610-mRNA-1:exon:3987;Parent=Msa1374610-mRNA-1
tig0019561 CDS 57476 57574 57476 ID=Msa1374610-mRNA-1:cds;Parent=Msa1374610-mRNA-1
tig0019561 CDS 57792 57870 57792 ID=Msa1374610-mRNA-1:cds;Parent=Msa1374610-mRNA-1
tig0019561 CDS 58165 58355 58165 ID=Msa1374610-mRNA-1:cds;Parent=Msa1374610-mRNA-1
tig0019561 CDS 59319 59388 59319 ID=Msa1374610-mRNA-1:cds;Parent=Msa1374610-mRNA-1
tig0019561 CDS 59478 59632 59478 ID=Msa1374610-mRNA-1:cds;Parent=Msa1374610-mRNA-1
tig0019561 three_prime_UTR 59633 59819 59633 ID=Msa1374610-mRNA-1:three_prime_utr;Parent=Msa1374610-mRNA-1
Gene Sequence

>Msa1374610

ATGCAAATGGCACTTTTGCTAAGAGGTGGAGCACTTGGAGATTCTAGCTTTCGTTTGTGTTCTATATCTTCAACCTCTTCTTTGCATGTCTCCCAAAATATTGCAAGTAGATTTAAAGCAGTAAGCAGAAACAAGATTAATTGCTCTGCAGTTCAAGAATCATCTACTAGTACATCAACTACTGCTGAAACAAAGGAGGAGGTTAAAGCAGAAGCTCCAAAAGCAGCAACAGTAAAGAAGGCTCCTGCTAAAGCTCCAGCTAAGCCCTTACCTCAGATGATGGAGGAGGATGTGATTCCTTCATTGAAAGCAATATTAGAAGCCCAACAAGATCTCTCTGATATTGAGCTGGTTTTTCAGGACAATAAGTTGGAAGGTTCCTTTCTGAAAAAAGGCAACCCCTATTCATTTTGGGCCTTCTTTCCCACAGGAATTACAGGTCCAAAGGGGTTTTCTCTGTCATCTTACAACTCAGGAGCAAGCACTGTTGAACCGTTTCTAGTTGATGAGAAGAAAGTTACTTCAAAACTTATTGTCTTTTGGGTTGAAAAACGTTTGGCAGCACAAGGGATTATTCCTGTATGGAAAGATTGA

Protein sequence

>Msa1374610

MQMALLLRGGALGDSSFRLCSISSTSSLHVSQNIASRFKAVSRNKINCSAVQESSTSTSTTAETKEEVKAEAPKAATVKKAPAKAPAKPLPQMMEEDVIPSLKAILEAQQDLSDIELVFQDNKLEGSFLKKGNPYSFWAFFPTGITGPKGFSLSSYNSGASTVEPFLVDEKKVTSKLIVFWVEKRLAAQGIIPVWKD*