AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTATCTGTTTATTGTTTC+GGG 0.114095 4_1:-69454340 Msa0567970:three_prime_UTR
TCCTTACATCTTTATATTCT+TGG 0.165785 4_1:+69455118 None:intergenic
TAACTATCTGTTTATTGTTT+CGG 0.197611 4_1:-69454341 Msa0567970:three_prime_UTR
TAATACCACCCATTTGATAT+TGG 0.215952 4_1:+69457145 None:intergenic
TTTAAATACCACGCGTGATT+TGG 0.248656 4_1:+69457829 None:intergenic
TTTCCACTCACATGTTCTTT+TGG 0.254274 4_1:-69454459 Msa0567970:three_prime_UTR
AATGAAGAGACAGTGATTTC+AGG 0.265594 4_1:+69454680 None:intergenic
CTTGAGAACCTTCAAGTAAA+AGG 0.266883 4_1:+69456447 None:intergenic
GGCGCCTTATATTCTTCTTT+TGG 0.267592 4_1:+69457850 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 4_1:+69457421 None:intergenic
GGTATTATTGCTATTTCATT+AGG 0.307379 4_1:-69457129 Msa0567970:intron
AATACCACCCATTTGATATT+GGG 0.311535 4_1:+69457146 None:intergenic
GGAACATGCACTGGCATCTC+TGG 0.334936 4_1:-69455555 Msa0567970:three_prime_UTR
GGGGCGGACCTGAGCAGGGC+AGG 0.358713 4_1:+69456538 None:intergenic
GAATTTCAACGAAATTTCTA+AGG 0.371566 4_1:-69455296 Msa0567970:three_prime_UTR
TTTCAGCTTGCCAGTGGAAT+GGG 0.373534 4_1:-69457456 Msa0567970:intron
ATTTCCAAAAGAAGAATATA+AGG 0.373895 4_1:-69457854 Msa0567970:CDS
TCATCTGATTCTTCTTTGGT+TGG 0.376105 4_1:+69457425 None:intergenic
TTTCCTCTGATAAGCGAGAT+TGG 0.384256 4_1:+69457372 None:intergenic
TGCCACACCCTGCCCTGCTC+AGG 0.389636 4_1:-69456546 Msa0567970:intron
AGTCAGGGGCGGACCTGAGC+AGG 0.395517 4_1:+69456533 None:intergenic
GATAAGCGAGATTGGAGCTT+TGG 0.414590 4_1:+69457380 None:intergenic
GTACACAACCCAATATCAAA+TGG 0.421767 4_1:-69457154 Msa0567970:three_prime_UTR
AAAATAAAATTATATTGAAA+AGG 0.440829 4_1:+69454240 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 4_1:+69454688 None:intergenic
TCATTTAATGAGGGTACCTT+AGG 0.442429 4_1:-69455587 Msa0567970:three_prime_UTR
TAAACAACATGAGTATAGTC+AGG 0.448575 4_1:+69456517 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 4_1:-69454661 Msa0567970:three_prime_UTR
ATCTCGCTTATCAGAGGAAA+AGG 0.455399 4_1:-69457369 Msa0567970:intron
GGCTCTTGAACCCATTCCAC+TGG 0.483835 4_1:+69457446 None:intergenic
TCATTTCTCTGTTGATCCAG+TGG 0.484155 4_1:-69454662 Msa0567970:three_prime_UTR
TTGAAAAGGTTACATTGTGT+TGG 0.487010 4_1:+69454254 None:intergenic
TTTACATGTTGGTGCATACA+TGG 0.488043 4_1:+69456404 None:intergenic
TACACAACCCAATATCAAAT+GGG 0.498209 4_1:-69457153 Msa0567970:three_prime_UTR
TTGTGTAAATTGTACTATCA+AGG 0.504240 4_1:+69455508 None:intergenic
GCAATTGAGTTTCAGAATGT+TGG 0.505112 4_1:+69454407 None:intergenic
TGAAAAGGTTACATTGTGTT+GGG 0.507546 4_1:+69454255 None:intergenic
TACATAAGCTCGGTTCCCAC+TGG 0.518561 4_1:+69454646 None:intergenic
TAACCAGGCGGAACATGCAC+TGG 0.530562 4_1:-69455564 Msa0567970:three_prime_UTR
GGGCGGACCTGAGCAGGGCA+GGG 0.532210 4_1:+69456539 None:intergenic
ATGCCAGTGCATGTTCCGCC+TGG 0.536544 4_1:+69455561 None:intergenic
ATGTGAGTGGAAATAGAAGC+AGG 0.552159 4_1:+69454469 None:intergenic
TTCATGTAGAAGAAAAGTTG+TGG 0.555269 4_1:-69457247 Msa0567970:intron
ATTTCTAAGGAGTATACTCA+TGG 0.556842 4_1:-69455283 Msa0567970:three_prime_UTR
AAAGGAGAAATTATCTGAAG+AGG 0.557579 4_1:-69457202 Msa0567970:three_prime_UTR
GTGATTTCAGGACAATAGGC+TGG 0.558184 4_1:+69454692 None:intergenic
ATCTCTGGCAACAGTGATGT+TGG 0.558570 4_1:-69455540 Msa0567970:three_prime_UTR
GTAGTGATACGATTTCGATC+AGG 0.566672 4_1:-69455259 Msa0567970:intron
GTTTCAGGGATTAATTAATG+TGG 0.569081 4_1:-69456297 Msa0567970:intron
ATGTTCCGCCTGGTTACCTA+AGG 0.573483 4_1:+69455571 None:intergenic
AAAGAATAAACTCCACTCCA+TGG 0.578056 4_1:+69455615 None:intergenic
ATGATTTATATATTTCGCAA+AGG 0.580470 4_1:-69456248 Msa0567970:three_prime_UTR
ATACTCATGTTGTTTACATG+CGG 0.580886 4_1:-69456510 Msa0567970:three_prime_UTR
GTCAGGGGCGGACCTGAGCA+GGG 0.581063 4_1:+69456534 None:intergenic
CCAGGAGTTCAGCCATGGAG+TGG 0.592692 4_1:-69455627 Msa0567970:intron
TGAGGGTACCTTAGGTAACC+AGG 0.595164 4_1:-69455579 Msa0567970:three_prime_UTR
GTAAATTGTACTATCAAGGA+AGG 0.603275 4_1:+69455512 None:intergenic
CATTTGTCTGCTCAAAGCAA+AGG 0.608614 4_1:-69457220 Msa0567970:three_prime_UTR
TTCTGAAACTCAATTGCCAT+AGG 0.613416 4_1:-69454401 Msa0567970:three_prime_UTR
TTATCATCACTACATAAGCT+CGG 0.620603 4_1:+69454636 None:intergenic
TTATATATTTCGCAAAGGAG+AGG 0.620757 4_1:-69456243 Msa0567970:intron
GCTCCAATCTCGCTTATCAG+AGG 0.623806 4_1:-69457375 Msa0567970:three_prime_UTR
TAGCCAAAAGAACATGTGAG+TGG 0.632547 4_1:+69454456 None:intergenic
AAACAACATGAGTATAGTCA+GGG 0.632636 4_1:+69456518 None:intergenic
ACAACCCAATATCAAATGGG+TGG 0.673588 4_1:-69457150 Msa0567970:three_prime_UTR
GCTGCGTATAAATATCTCGA+AGG 0.686766 4_1:+69455140 None:intergenic
TTGATAGTACAATTTACACA+AGG 0.690159 4_1:-69455506 Msa0567970:intron
AACATGAGTATAGTCAGGGG+CGG 0.701056 4_1:+69456522 None:intergenic
ATAAGGCGCCAAATCACGCG+TGG 0.704099 4_1:-69457837 Msa0567970:intron
AACAACATGAGTATAGTCAG+GGG 0.725493 4_1:+69456519 None:intergenic
GGGTACCTTAGGTAACCAGG+CGG 0.811298 4_1:-69455576 Msa0567970:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTCAGTTTTTTTTTA+AGG + chr4_1:69457223-69457242 None:intergenic 10.0%
!! TAATAATGTTATTACGTATT+AGG - chr4_1:69454696-69454715 Msa0567970:three_prime_UTR 15.0%
!! ACAACATTTACTTTATTATT+AGG - chr4_1:69454977-69454996 Msa0567970:intron 15.0%
!!! TATCTATTTTTTTCAACATT+AGG - chr4_1:69455282-69455301 Msa0567970:three_prime_UTR 15.0%
!! TTTCTCATTAAATGAAATTA+AGG + chr4_1:69456008-69456027 None:intergenic 15.0%
!! GTTATTAATATTTAATTGTC+AGG - chr4_1:69456700-69456719 Msa0567970:intron 15.0%
!!! TAAAACATTATTTTATGCTT+AGG - chr4_1:69456949-69456968 Msa0567970:intron 15.0%
!! AACAAGAATATAAACTAAAT+TGG - chr4_1:69457277-69457296 Msa0567970:intron 15.0%
!! AATATAAACTAAATTGGATT+TGG - chr4_1:69457283-69457302 Msa0567970:intron 15.0%
!!! TATATTCTTCTTTTGGAAAT+TGG + chr4_1:69454168-69454187 None:intergenic 20.0%
!! ATTTCCAAAAGAAGAATATA+AGG - chr4_1:69454168-69454187 Msa0567970:three_prime_UTR 20.0%
!! AATCATAATGACATGAAAAA+TGG + chr4_1:69454732-69454751 None:intergenic 20.0%
!!! ATTAAACTAACCTTGTTTTT+TGG + chr4_1:69455154-69455173 None:intergenic 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG - chr4_1:69455158-69455177 Msa0567970:intron 20.0%
!!! AGTTTTCATAGAATTTTTCA+AGG + chr4_1:69455555-69455574 None:intergenic 20.0%
!! TAAGAGTAACAGAAAAATAA+AGG + chr4_1:69455659-69455678 None:intergenic 20.0%
!! ATGATTTATATATTTCGCAA+AGG - chr4_1:69455774-69455793 Msa0567970:intron 20.0%
!!! TCTTTTGATATCATTTAATG+AGG - chr4_1:69456425-69456444 Msa0567970:three_prime_UTR 20.0%
!!! CTTTTGATATCATTTAATGA+GGG - chr4_1:69456426-69456445 Msa0567970:three_prime_UTR 20.0%
!! TAAAAGATCTAATTACACAA+CGG + chr4_1:69456590-69456609 None:intergenic 20.0%
!!! TGTAATTAGATCTTTTAACA+TGG - chr4_1:69456593-69456612 Msa0567970:intron 20.0%
!! TGTAAAATGTATTTATCTAC+AGG + chr4_1:69457183-69457202 None:intergenic 20.0%
!! TAACTATCTGTTTATTGTTT+CGG - chr4_1:69457681-69457700 Msa0567970:intron 20.0%
!!! AATACATCAGATTTTTCTAT+TGG - chr4_1:69457829-69457848 Msa0567970:intron 20.0%
!!! ACAGTTTCTTTATTTTTGAA+AGG - chr4_1:69457859-69457878 Msa0567970:CDS 20.0%
! TCATCTCTCACTTTATTATT+TGG - chr4_1:69454306-69454325 Msa0567970:intron 25.0%
! CATCTCTCACTTTATTATTT+GGG - chr4_1:69454307-69454326 Msa0567970:intron 25.0%
! ATCTCTCACTTTATTATTTG+GGG - chr4_1:69454308-69454327 Msa0567970:intron 25.0%
!!! GGTATTATTGCTATTTCATT+AGG - chr4_1:69454893-69454912 Msa0567970:intron 25.0%
! ATTCTAGATGAAATTCATGT+GGG + chr4_1:69455065-69455084 None:intergenic 25.0%
! ATCCAGAAAGAACAAAAAAA+AGG - chr4_1:69455374-69455393 Msa0567970:intron 25.0%
! AAAATAAAGGAAAAGAGAGT+CGG + chr4_1:69455646-69455665 None:intergenic 25.0%
! CTCATTAAATGAAATTAAGG+TGG + chr4_1:69456005-69456024 None:intergenic 25.0%
! TTGTGTAAATTGTACTATCA+AGG + chr4_1:69456517-69456536 None:intergenic 25.0%
!! TTGATAGTACAATTTACACA+AGG - chr4_1:69456516-69456535 Msa0567970:three_prime_UTR 25.0%
! AGTAGAAAATCAAAACATAC+TGG + chr4_1:69456677-69456696 None:intergenic 25.0%
! GAATTTCAACGAAATTTCTA+AGG - chr4_1:69456726-69456745 Msa0567970:intron 25.0%
! TCCTTACATCTTTATATTCT+TGG + chr4_1:69456907-69456926 None:intergenic 25.0%
! TATAACTCAGGATATTTGTT+TGG - chr4_1:69457011-69457030 Msa0567970:intron 25.0%
! ATAACTCAGGATATTTGTTT+GGG - chr4_1:69457012-69457031 Msa0567970:intron 25.0%
! AACTATCTGTTTATTGTTTC+GGG - chr4_1:69457682-69457701 Msa0567970:intron 25.0%
ATCAGCATCACAAAAACAAT+GGG + chr4_1:69454275-69454294 None:intergenic 30.0%
TAAAGTGAGAGATGATGTTA+AGG + chr4_1:69454301-69454320 None:intergenic 30.0%
TTCATGTAGAAGAAAAGTTG+TGG - chr4_1:69454775-69454794 Msa0567970:intron 30.0%
AAAGGAGAAATTATCTGAAG+AGG - chr4_1:69454820-69454839 Msa0567970:intron 30.0%
TACACAACCCAATATCAAAT+GGG - chr4_1:69454869-69454888 Msa0567970:intron 30.0%
AATACCACCCATTTGATATT+GGG + chr4_1:69454879-69454898 None:intergenic 30.0%
TAATACCACCCATTTGATAT+TGG + chr4_1:69454880-69454899 None:intergenic 30.0%
ACACTCAAACACATTGAATT+GGG - chr4_1:69455019-69455038 Msa0567970:intron 30.0%
CATTCTAGATGAAATTCATG+TGG + chr4_1:69455066-69455085 None:intergenic 30.0%
!!! CCTTGTTTTTTGGTAATAGA+TGG + chr4_1:69455144-69455163 None:intergenic 30.0%
CCATCTATTACCAAAAAACA+AGG - chr4_1:69455141-69455160 Msa0567970:three_prime_UTR 30.0%
!!! AGCCTTTTTTTTGTTCTTTC+TGG + chr4_1:69455379-69455398 None:intergenic 30.0%
AAACAACATGAGTATAGTCA+GGG + chr4_1:69455507-69455526 None:intergenic 30.0%
TAAACAACATGAGTATAGTC+AGG + chr4_1:69455508-69455527 None:intergenic 30.0%
! ATACTCATGTTGTTTACATG+CGG - chr4_1:69455512-69455531 Msa0567970:three_prime_UTR 30.0%
! TGAAAACTCCTTTTACTTGA+AGG - chr4_1:69455567-69455586 Msa0567970:three_prime_UTR 30.0%
!!! ACCTTTACTGATTTTGTTTC+AGG - chr4_1:69455710-69455729 Msa0567970:intron 30.0%
!!! CCTTTACTGATTTTGTTTCA+GGG - chr4_1:69455711-69455730 Msa0567970:intron 30.0%
GTTTCAGGGATTAATTAATG+TGG - chr4_1:69455725-69455744 Msa0567970:intron 30.0%
TTATATATTTCGCAAAGGAG+AGG - chr4_1:69455779-69455798 Msa0567970:intron 30.0%
! CTGATTAACTTTTCCTCTTA+TGG - chr4_1:69455808-69455827 Msa0567970:intron 30.0%
TCAATTTATCGATCCATAAG+AGG + chr4_1:69455824-69455843 None:intergenic 30.0%
GTAATAGATCTCACATTAAG+TGG + chr4_1:69455970-69455989 None:intergenic 30.0%
TGAGATCTATTACAAAGTGT+GGG - chr4_1:69455977-69455996 Msa0567970:intron 30.0%
TTCCTATATACTTCAGTCTT+AGG - chr4_1:69456154-69456173 Msa0567970:intron 30.0%
ATCCTAAGACTGAAGTATAT+AGG + chr4_1:69456159-69456178 None:intergenic 30.0%
GTAAATTGTACTATCAAGGA+AGG + chr4_1:69456513-69456532 None:intergenic 30.0%
AACATCTGAATAAATGTTGG+TGG + chr4_1:69456555-69456574 None:intergenic 30.0%
!! GATCTTTTAACATGGTTTGT+TGG - chr4_1:69456601-69456620 Msa0567970:intron 30.0%
!!! AACAGTTCATTGTTTTGACA+AGG - chr4_1:69456630-69456649 Msa0567970:intron 30.0%
! ATTTCTAAGGAGTATACTCA+TGG - chr4_1:69456739-69456758 Msa0567970:intron 30.0%
!!! GATTTTTTTTCCTCCCAATT+TGG - chr4_1:69456812-69456831 Msa0567970:intron 30.0%
GCCAAGAATATAAAGATGTA+AGG - chr4_1:69456903-69456922 Msa0567970:intron 30.0%
TCCTGTAAACTATATAACTC+AGG - chr4_1:69456999-69457018 Msa0567970:intron 30.0%
TCCTGAGTTATATAGTTTAC+AGG + chr4_1:69457003-69457022 None:intergenic 30.0%
TAACTCAGGATATTTGTTTG+GGG - chr4_1:69457013-69457032 Msa0567970:intron 30.0%
! CTAAATTGGATTTGGTAAAC+AGG - chr4_1:69457291-69457310 Msa0567970:intron 30.0%
TTATCATCACTACATAAGCT+CGG + chr4_1:69457389-69457408 None:intergenic 30.0%
TTTCTACTTGAAATGTGACT+TGG - chr4_1:69457490-69457509 Msa0567970:intron 30.0%
!! TTTTAGGAACAAGGAACATA+TGG - chr4_1:69457524-69457543 Msa0567970:intron 30.0%
AAGCAACAAAAACTTTCCTA+TGG + chr4_1:69457640-69457659 None:intergenic 30.0%
ATGTCAAAATCAAACCTTCA+CGG - chr4_1:69457720-69457739 Msa0567970:intron 30.0%
! ATATTAAAAGTGTACCGTGA+AGG + chr4_1:69457737-69457756 None:intergenic 30.0%
TGAAAAGGTTACATTGTGTT+GGG + chr4_1:69457770-69457789 None:intergenic 30.0%
TTGAAAAGGTTACATTGTGT+TGG + chr4_1:69457771-69457790 None:intergenic 30.0%
TTTAAATACCACGCGTGATT+TGG + chr4_1:69454196-69454215 None:intergenic 35.0%
CATCAGCATCACAAAAACAA+TGG + chr4_1:69454276-69454295 None:intergenic 35.0%
AATGCATTAGCCAGCTAAAA+AGG - chr4_1:69454339-69454358 Msa0567970:three_prime_UTR 35.0%
!! ATTTTCACTGCCTTTTTAGC+TGG + chr4_1:69454352-69454371 None:intergenic 35.0%
AAAGGTAAAGGCAAAGATAG+AGG + chr4_1:69454459-69454478 None:intergenic 35.0%
CCTTGTAAAGGTAAAGGTAA+AGG + chr4_1:69454471-69454490 None:intergenic 35.0%
CCTTTACCTTTACCTTTACA+AGG - chr4_1:69454468-69454487 Msa0567970:three_prime_UTR 35.0%
AACTGACCTTGTAAAGGTAA+AGG + chr4_1:69454477-69454496 None:intergenic 35.0%
TGAAGTAACTGACCTTGTAA+AGG + chr4_1:69454483-69454502 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG + chr4_1:69454600-69454619 None:intergenic 35.0%
ACTCTCATCTGATTCTTCTT+TGG + chr4_1:69454604-69454623 None:intergenic 35.0%
GTACACAACCCAATATCAAA+TGG - chr4_1:69454868-69454887 Msa0567970:intron 35.0%
CACACTCAAACACATTGAAT+TGG - chr4_1:69455018-69455037 Msa0567970:intron 35.0%
TGTGTTCGACATGTTACATT+TGG + chr4_1:69455192-69455211 None:intergenic 35.0%
AACAACATGAGTATAGTCAG+GGG + chr4_1:69455506-69455525 None:intergenic 35.0%
TACATGCGGTTTCAGAAAAA+TGG - chr4_1:69455526-69455545 Msa0567970:three_prime_UTR 35.0%
CTTGAGAACCTTCAAGTAAA+AGG + chr4_1:69455578-69455597 None:intergenic 35.0%
! CTTTTACTTGAAGGTTCTCA+AGG - chr4_1:69455576-69455595 Msa0567970:three_prime_UTR 35.0%
TTTACATGTTGGTGCATACA+TGG + chr4_1:69455621-69455640 None:intergenic 35.0%
!! TCCTTATGAACGTTTTGACA+CGG - chr4_1:69455687-69455706 Msa0567970:intron 35.0%
CCCTGAAACAAAATCAGTAA+AGG + chr4_1:69455714-69455733 None:intergenic 35.0%
!! AATTTGCTAGCACTCATCTA+TGG + chr4_1:69455884-69455903 None:intergenic 35.0%
TTAGTACTCACTCTCTTCAT+TGG - chr4_1:69455923-69455942 Msa0567970:intron 35.0%
TTCATTGGATGAGATCAATG+TGG - chr4_1:69455938-69455957 Msa0567970:intron 35.0%
TAGATCTCACATTAAGTGGT+GGG + chr4_1:69455966-69455985 None:intergenic 35.0%
ATAGATCTCACATTAAGTGG+TGG + chr4_1:69455967-69455986 None:intergenic 35.0%
GTGAGATCTATTACAAAGTG+TGG - chr4_1:69455976-69455995 Msa0567970:intron 35.0%
GAGATCTATTACAAAGTGTG+GGG - chr4_1:69455978-69455997 Msa0567970:intron 35.0%
AAAATGAACATAGTTGCTCC+TGG - chr4_1:69456117-69456136 Msa0567970:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG - chr4_1:69456118-69456137 Msa0567970:intron 35.0%
TTGACTAATAGCAGCTATAG+TGG + chr4_1:69456255-69456274 None:intergenic 35.0%
! GTGATTTGTACAAATTCCAG+TGG - chr4_1:69456308-69456327 Msa0567970:intron 35.0%
! GAAGTAGTGTCGTTAAATAG+CGG + chr4_1:69456360-69456379 None:intergenic 35.0%
! TTCAAATGAATTTTGTCGCC+AGG - chr4_1:69456377-69456396 Msa0567970:intron 35.0%
AAAGAATAAACTCCACTCCA+TGG + chr4_1:69456410-69456429 None:intergenic 35.0%
!! TCATTTAATGAGGGTACCTT+AGG - chr4_1:69456435-69456454 Msa0567970:three_prime_UTR 35.0%
GGCAACATCTGAATAAATGT+TGG + chr4_1:69456558-69456577 None:intergenic 35.0%
CAGATATAAACCGTGAGATT+GGG + chr4_1:69456793-69456812 None:intergenic 35.0%
TCAGATATAAACCGTGAGAT+TGG + chr4_1:69456794-69456813 None:intergenic 35.0%
ATGATGTCATACACCAGAAT+GGG + chr4_1:69456847-69456866 None:intergenic 35.0%
!! TGCTTAGGTAGCTTGTTAAA+TGG - chr4_1:69456964-69456983 Msa0567970:intron 35.0%
ATCATGCTATCATTTCCTCT+TGG - chr4_1:69457036-69457055 Msa0567970:intron 35.0%
!! GAATTGTGTCATTTACCAAG+AGG + chr4_1:69457054-69457073 None:intergenic 35.0%
! TTGGATTTGGTAAACAGGTA+TGG - chr4_1:69457296-69457315 Msa0567970:intron 35.0%
AATGAAGAGACAGTGATTTC+AGG + chr4_1:69457345-69457364 None:intergenic 35.0%
TACTTGCCATATACTTCAAG+TGG - chr4_1:69457428-69457447 Msa0567970:CDS 35.0%
! CTTGGTTTCCTCTTCTTTTT+AGG - chr4_1:69457508-69457527 Msa0567970:intron 35.0%
!! TCCTCTTCTTTTTAGGAACA+AGG - chr4_1:69457515-69457534 Msa0567970:intron 35.0%
TCCTTGTTCCTAAAAAGAAG+AGG + chr4_1:69457519-69457538 None:intergenic 35.0%
! TTTCCACTCACATGTTCTTT+TGG - chr4_1:69457563-69457582 Msa0567970:intron 35.0%
GCAATTGAGTTTCAGAATGT+TGG + chr4_1:69457618-69457637 None:intergenic 35.0%
!! TTCTGAAACTCAATTGCCAT+AGG - chr4_1:69457621-69457640 Msa0567970:intron 35.0%
! GGCGCCTTATATTCTTCTTT+TGG + chr4_1:69454175-69454194 None:intergenic 40.0%
AGCATCACAAAAACAATGGG+TGG + chr4_1:69454272-69454291 None:intergenic 40.0%
!! AAGGCAAAGATAGAGGTGTT+GGG + chr4_1:69454452-69454471 None:intergenic 40.0%
! AAAGGCAAAGATAGAGGTGT+TGG + chr4_1:69454453-69454472 None:intergenic 40.0%
CTCAAATCAATGCATGCATG+CGG + chr4_1:69454522-69454541 None:intergenic 40.0%
!!! TTTCTTTTTCAGCTTGCCAG+TGG - chr4_1:69454560-69454579 Msa0567970:intron 40.0%
TTTCCTCTGATAAGCGAGAT+TGG + chr4_1:69454653-69454672 None:intergenic 40.0%
ATCTCGCTTATCAGAGGAAA+AGG - chr4_1:69454653-69454672 Msa0567970:three_prime_UTR 40.0%
CATTTGTCTGCTCAAAGCAA+AGG - chr4_1:69454802-69454821 Msa0567970:intron 40.0%
ACAACCCAATATCAAATGGG+TGG - chr4_1:69454872-69454891 Msa0567970:intron 40.0%
TATCTATCAGCAGAGAAGAG+AGG + chr4_1:69455234-69455253 None:intergenic 40.0%
GTGTCAAAACGTTCATAAGG+AGG + chr4_1:69455688-69455707 None:intergenic 40.0%
TCCGTGTCAAAACGTTCATA+AGG + chr4_1:69455691-69455710 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG + chr4_1:69456138-69456157 None:intergenic 40.0%
ACCACTAATCGCTGAAAAAG+TGG - chr4_1:69456192-69456211 Msa0567970:intron 40.0%
!!! ACCACTTTTTCAGCGATTAG+TGG + chr4_1:69456196-69456215 None:intergenic 40.0%
ATTACACAACGGCTAACACA+AGG + chr4_1:69456579-69456598 None:intergenic 40.0%
GTAGTGATACGATTTCGATC+AGG - chr4_1:69456763-69456782 Msa0567970:intron 40.0%
!! TGGGTTAGCACAACCAAATT+GGG + chr4_1:69456828-69456847 None:intergenic 40.0%
!! ATGGGTTAGCACAACCAAAT+TGG + chr4_1:69456829-69456848 None:intergenic 40.0%
GATGATGTCATACACCAGAA+TGG + chr4_1:69456848-69456867 None:intergenic 40.0%
GCTGCGTATAAATATCTCGA+AGG + chr4_1:69456885-69456904 None:intergenic 40.0%
GACAGTGATTTCAGGACAAT+AGG + chr4_1:69457337-69457356 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG - chr4_1:69457360-69457379 Msa0567970:intron 40.0%
CATTTCTCTGTTGATCCAGT+GGG - chr4_1:69457361-69457380 Msa0567970:intron 40.0%
! TGTCTGCCACTTGAAGTATA+TGG + chr4_1:69457437-69457456 None:intergenic 40.0%
ATGTGAGTGGAAATAGAAGC+AGG + chr4_1:69457556-69457575 None:intergenic 40.0%
TAGCCAAAAGAACATGTGAG+TGG + chr4_1:69457569-69457588 None:intergenic 40.0%
ACAAAAACAATGGGTGGACC+AGG + chr4_1:69454266-69454285 None:intergenic 45.0%
!! AGGCAAAGATAGAGGTGTTG+GGG + chr4_1:69454451-69454470 None:intergenic 45.0%
CATGCATGCGGTAACAAATG+AGG + chr4_1:69454510-69454529 None:intergenic 45.0%
! TTTTCAGCTTGCCAGTGGAA+TGG - chr4_1:69454565-69454584 Msa0567970:intron 45.0%
TTTCAGCTTGCCAGTGGAAT+GGG - chr4_1:69454566-69454585 Msa0567970:intron 45.0%
GATAAGCGAGATTGGAGCTT+TGG + chr4_1:69454645-69454664 None:intergenic 45.0%
ACTCACACGTACCAATCACT+TGG - chr4_1:69455335-69455354 Msa0567970:intron 45.0%
CTCACACGTACCAATCACTT+GGG - chr4_1:69455336-69455355 Msa0567970:intron 45.0%
CTCTCATGTTCCCAAGTGAT+TGG + chr4_1:69455349-69455368 None:intergenic 45.0%
! ATGTCTAGCTTATGTGCTCC+TGG - chr4_1:69455444-69455463 Msa0567970:intron 45.0%
AACATGAGTATAGTCAGGGG+CGG + chr4_1:69455503-69455522 None:intergenic 45.0%
! GAGAGTCGGTGTTTACATGT+TGG + chr4_1:69455632-69455651 None:intergenic 45.0%
ATGTTGCTAGCACGCTTCTT+TGG - chr4_1:69456046-69456065 Msa0567970:intron 45.0%
GCTTCTTTGGCCATAACCTA+GGG - chr4_1:69456059-69456078 Msa0567970:intron 45.0%
CTTCTTTGGCCATAACCTAG+GGG - chr4_1:69456060-69456079 Msa0567970:intron 45.0%
GGTATAATGCTACAGTCCAC+TGG + chr4_1:69456327-69456346 None:intergenic 45.0%
TCGTTAAATAGCGGCTACAG+CGG + chr4_1:69456351-69456370 None:intergenic 45.0%
ATCTCTGGCAACAGTGATGT+TGG - chr4_1:69456482-69456501 Msa0567970:three_prime_UTR 45.0%
ATCAGGTGATCCCAATCTCA+CGG - chr4_1:69456780-69456799 Msa0567970:intron 45.0%
GTTAGCACAACCAAATTGGG+AGG + chr4_1:69456825-69456844 None:intergenic 45.0%
TTGGTTGTGCTAACCCATTC+TGG - chr4_1:69456831-69456850 Msa0567970:intron 45.0%
GACATCATCTTCTGCAGTTG+AGG - chr4_1:69456859-69456878 Msa0567970:intron 45.0%
GTGATTTCAGGACAATAGGC+TGG + chr4_1:69457333-69457352 None:intergenic 45.0%
GTAGAAAAGCTGCGAGCATT+TGG + chr4_1:69457477-69457496 None:intergenic 45.0%
!! AAAATAAAAATAAAAATGAA+AGG - chr4_1:69454224-69454243 Msa0567970:three_prime_UTR 5.0%
!! AAAATAAAATTATATTGAAA+AGG + chr4_1:69457785-69457804 None:intergenic 5.0%
!!! TTTTCAATATAATTTTATTT+TGG - chr4_1:69457784-69457803 Msa0567970:intron 5.0%
GGCGTTGTTTACTCCAAACC+TGG - chr4_1:69454245-69454264 Msa0567970:three_prime_UTR 50.0%
AACAATGGGTGGACCAGGTT+TGG + chr4_1:69454261-69454280 None:intergenic 50.0%
GTGTTGGGGTGAATTGACGA+GGG + chr4_1:69454437-69454456 None:intergenic 50.0%
GCTCCAATCTCGCTTATCAG+AGG - chr4_1:69454647-69454666 Msa0567970:three_prime_UTR 50.0%
TAGCTTATGTGCTCCTGGTG+TGG - chr4_1:69455449-69455468 Msa0567970:intron 50.0%
CGCTTCTTTGGCCATAACCT+AGG - chr4_1:69456058-69456077 Msa0567970:intron 50.0%
AATCTGCTGCCCCTAGGTTA+TGG + chr4_1:69456072-69456091 None:intergenic 50.0%
ACGTAAAATCTGCTGCCCCT+AGG + chr4_1:69456078-69456097 None:intergenic 50.0%
CATAGTTGCTCCTGGGTTCT+AGG - chr4_1:69456125-69456144 Msa0567970:intron 50.0%
AGCAGCTATAGTGGCGCAAT+AGG + chr4_1:69456246-69456265 None:intergenic 50.0%
TTAAATAGCGGCTACAGCGG+TGG + chr4_1:69456348-69456367 None:intergenic 50.0%
!! TGAGGGTACCTTAGGTAACC+AGG - chr4_1:69456443-69456462 Msa0567970:three_prime_UTR 50.0%
ATGTTCCGCCTGGTTACCTA+AGG + chr4_1:69456454-69456473 None:intergenic 50.0%
TACATAAGCTCGGTTCCCAC+TGG + chr4_1:69457379-69457398 None:intergenic 50.0%
! ATAAGGCGCCAAATCACGCG+TGG - chr4_1:69454185-69454204 Msa0567970:three_prime_UTR 55.0%
! GGTGTTGGGGTGAATTGACG+AGG + chr4_1:69454438-69454457 None:intergenic 55.0%
GGCTCTTGAACCCATTCCAC+TGG + chr4_1:69454579-69454598 None:intergenic 55.0%
GGGTACCTTAGGTAACCAGG+CGG - chr4_1:69456446-69456465 Msa0567970:three_prime_UTR 55.0%
TAACCAGGCGGAACATGCAC+TGG - chr4_1:69456458-69456477 Msa0567970:three_prime_UTR 55.0%
! GGAACATGCACTGGCATCTC+TGG - chr4_1:69456467-69456486 Msa0567970:three_prime_UTR 55.0%
GGTGTGGCAATAGCCACACC+AGG + chr4_1:69455465-69455484 None:intergenic 60.0%
TGTCGCCAGGAGTTCAGCCA+TGG - chr4_1:69456390-69456409 Msa0567970:intron 60.0%
CCACTCCATGGCTGAACTCC+TGG + chr4_1:69456398-69456417 None:intergenic 60.0%
CCAGGAGTTCAGCCATGGAG+TGG - chr4_1:69456395-69456414 Msa0567970:intron 60.0%
ATGCCAGTGCATGTTCCGCC+TGG + chr4_1:69456464-69456483 None:intergenic 60.0%
TGCCACACCCTGCCCTGCTC+AGG - chr4_1:69455476-69455495 Msa0567970:intron 70.0%
GACCTGAGCAGGGCAGGGTG+TGG + chr4_1:69455481-69455500 None:intergenic 70.0%
GTCAGGGGCGGACCTGAGCA+GGG + chr4_1:69455491-69455510 None:intergenic 70.0%
AGTCAGGGGCGGACCTGAGC+AGG + chr4_1:69455492-69455511 None:intergenic 70.0%
GGGCGGACCTGAGCAGGGCA+GGG + chr4_1:69455486-69455505 None:intergenic 75.0%
! GGGGCGGACCTGAGCAGGGC+AGG + chr4_1:69455487-69455506 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69454136 69457908 69454136 ID=Msa0567970;Name=Msa0567970
chr4_1 mRNA 69454136 69457908 69454136 ID=Msa0567970-mRNA-1;Parent=Msa0567970;Name=Msa0567970-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.9|0.90|0.90|0.2|0.18|11|1092|43
chr4_1 exon 69454136 69454296 69454136 ID=Msa0567970-mRNA-1:exon:23204;Parent=Msa0567970-mRNA-1
chr4_1 exon 69454317 69454514 69454317 ID=Msa0567970-mRNA-1:exon:23203;Parent=Msa0567970-mRNA-1
chr4_1 exon 69454631 69454731 69454631 ID=Msa0567970-mRNA-1:exon:23202;Parent=Msa0567970-mRNA-1
chr4_1 exon 69455125 69455168 69455125 ID=Msa0567970-mRNA-1:exon:23201;Parent=Msa0567970-mRNA-1
chr4_1 exon 69455260 69455322 69455260 ID=Msa0567970-mRNA-1:exon:23200;Parent=Msa0567970-mRNA-1
chr4_1 exon 69455507 69455637 69455507 ID=Msa0567970-mRNA-1:exon:23199;Parent=Msa0567970-mRNA-1
chr4_1 exon 69456244 69456312 69456244 ID=Msa0567970-mRNA-1:exon:23198;Parent=Msa0567970-mRNA-1
chr4_1 exon 69456409 69456560 69456409 ID=Msa0567970-mRNA-1:exon:23197;Parent=Msa0567970-mRNA-1
chr4_1 exon 69457130 69457260 69457130 ID=Msa0567970-mRNA-1:exon:23196;Parent=Msa0567970-mRNA-1
chr4_1 exon 69457370 69457472 69457370 ID=Msa0567970-mRNA-1:exon:23195;Parent=Msa0567970-mRNA-1
chr4_1 exon 69457838 69457908 69457838 ID=Msa0567970-mRNA-1:exon:23194;Parent=Msa0567970-mRNA-1
chr4_1 CDS 69457838 69457908 69457838 ID=Msa0567970-mRNA-1:cds;Parent=Msa0567970-mRNA-1
chr4_1 CDS 69457412 69457472 69457412 ID=Msa0567970-mRNA-1:cds;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69457370 69457411 69457370 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69457130 69457260 69457130 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69456409 69456560 69456409 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69456244 69456312 69456244 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69455507 69455637 69455507 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69455260 69455322 69455260 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69455125 69455168 69455125 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69454631 69454731 69454631 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69454317 69454514 69454317 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
chr4_1 three_prime_UTR 69454136 69454296 69454136 ID=Msa0567970-mRNA-1:three_prime_utr;Parent=Msa0567970-mRNA-1
Gene Sequence

>Msa0567970

ATGAAGGACGTGCAAGAACTAGAAGAAGTCCAATTTCCAAAAGAAGAATATAAGGCGCCAAATCACGCGTGCTTGCCAGTGGAATGGGTTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAG

Protein sequence

>Msa0567970

MKDVQELEEVQFPKEEYKAPNHACLPVEWVQEPTKEESDESIL*