AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0571220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571220 MtrunA17_Chr8g0386421 92.308 299 13 2 1 291 1 297 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571220 AT2G32500.2 58.088 272 109 3 24 291 6 276 1.62e-109 318
Msa0571220 AT2G32500.1 56.938 209 85 3 24 228 6 213 7.25e-77 233

Find 79 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATCTGTTTATTGTTTC+GGG 0.115077 4_1:+73792206 Msa0571220:three_prime_UTR
TCCTTACATCTTTATATTCT+TGG 0.165785 4_1:-73791381 None:intergenic
CTGCTATCTGTTTATTGTTT+CGG 0.203560 4_1:+73792205 Msa0571220:three_prime_UTR
TTACATGCGGTTTCAGAAAA+AGG 0.210570 4_1:+73789996 Msa0571220:CDS
CTTTAGAACCTTCAAGTAAA+AGG 0.235434 4_1:-73790046 None:intergenic
AATGAAGAGACAGTGATTTC+AGG 0.265594 4_1:-73791854 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 4_1:-73789053 None:intergenic
TATACTCCTTAGAGCTTTCA+TGG 0.280782 4_1:-73791211 None:intergenic
TAATACCACCCATTTGATAC+TGG 0.287395 4_1:-73789334 None:intergenic
TTTCCACTCACAAGTTCTTT+TGG 0.299688 4_1:+73792066 Msa0571220:three_prime_UTR
GGTATTATTGCTATTTCATT+AGG 0.307379 4_1:+73789350 Msa0571220:CDS
GGAACATGCACTGGCATCTC+TGG 0.334936 4_1:+73790945 Msa0571220:CDS
AATGCATTAGCGAGCTAAAA+AGG 0.335331 4_1:+73788783 Msa0571220:five_prime_UTR
TGAAAAGGTTACACTGTGTT+AGG 0.360808 4_1:-73792291 None:intergenic
TTTCCTCTGAGAAGCGAGAT+TGG 0.373152 4_1:-73789102 None:intergenic
TCATCTGATTCTTCTTTGGT+TGG 0.376105 4_1:-73789049 None:intergenic
CCTTTACCTTTACCTTTACA+AGG 0.391427 4_1:+73788911 Msa0571220:CDS
GAGAAGCGAGATTGGAGCTT+TGG 0.392038 4_1:-73789094 None:intergenic
TTCTTAAAGCTCAATGTGTC+TGG 0.392150 4_1:+73792180 Msa0571220:three_prime_UTR
GAATTTCCATGAAAGCTCTA+AGG 0.406314 4_1:+73791205 Msa0571220:CDS
AAAACTTTCCTATGGCAATT+GGG 0.428568 4_1:-73792132 None:intergenic
AAAATAAAATTATATTGAAA+AGG 0.440829 4_1:-73792306 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 4_1:-73791846 None:intergenic
TCATTTAATGAGGGTACCTT+AGG 0.442429 4_1:+73790913 Msa0571220:CDS
TTTCTGAAACCGCATGTAAA+CGG 0.443161 4_1:-73789992 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 4_1:+73791873 Msa0571220:CDS
GGCTCTTGAATCCATTCCAC+TGG 0.451282 4_1:-73789028 None:intergenic
AAAGGTAAAGATAGAGGTGT+TGG 0.454888 4_1:-73788893 None:intergenic
AAGGTAAAGATAGAGGTGTT+GGG 0.456800 4_1:-73788892 None:intergenic
GTACACAACCCAGTATCAAA+TGG 0.466541 4_1:+73789325 Msa0571220:CDS
ATCTCGCTTCTCAGAGGAAA+AGG 0.472916 4_1:+73789105 Msa0571220:CDS
AAAGGTAAAGGTAAAGATAG+AGG 0.480721 4_1:-73788899 None:intergenic
TCATTTCTCTGTTGATCCAG+TGG 0.484155 4_1:+73791872 Msa0571220:CDS
TTGTGTAAATTGTACTATCA+AGG 0.504240 4_1:-73790992 None:intergenic
ATGTCAAAATCAAACCTTCA+AGG 0.507168 4_1:+73792244 Msa0571220:three_prime_UTR
ACGGCATGAGTATAGTGGTC+AGG 0.516130 4_1:-73789973 None:intergenic
TGTAAACGGCATGAGTATAG+TGG 0.519619 4_1:-73789978 None:intergenic
AATACCACCCATTTGATACT+GGG 0.530236 4_1:-73789333 None:intergenic
TAACCAGGCGGAACATGCAC+TGG 0.530562 4_1:+73790936 Msa0571220:CDS
TAACTGTCTGGACCTTGTAA+AGG 0.530646 4_1:-73788923 None:intergenic
TACACAACCCAGTATCAAAT+GGG 0.530800 4_1:+73789326 Msa0571220:CDS
CCTTGTAAAGGTAAAGGTAA+AGG 0.531828 4_1:-73788911 None:intergenic
GTAGTGATACGATTCCGATC+AGG 0.536411 4_1:+73791242 Msa0571220:CDS
TCTGGACCTTGTAAAGGTAA+AGG 0.536544 4_1:-73788917 None:intergenic
ATGCCAGTGCATGTTCCGCC+TGG 0.536544 4_1:-73790939 None:intergenic
AGCTCTAAGGAGTATACTCA+TGG 0.540924 4_1:+73791218 Msa0571220:CDS
GCAATTGGGTTTCAGAATGT+CGG 0.544545 4_1:-73792118 None:intergenic
TTGTGAGTGGAAATAGAAGC+AGG 0.552159 4_1:-73792056 None:intergenic
GTGATTTCAGGACAATAGGC+TGG 0.558184 4_1:-73791842 None:intergenic
ATCTCTGGCAACAGTGATGT+TGG 0.558570 4_1:+73790960 Msa0571220:CDS
TACATAAGCTCAGTTCCCAC+TGG 0.566469 4_1:-73791888 None:intergenic
CGAAACAATAAACAGATAGC+AGG 0.568699 4_1:-73792204 None:intergenic
TTGTCTGCTAAAAGCAAAGG+AGG 0.570007 4_1:+73789262 Msa0571220:CDS
TGTGGCCAGGAGTTCAGCCA+TGG 0.572033 4_1:+73790868 Msa0571220:intron
ATGTTCCGCCTGGTTACCTA+AGG 0.573483 4_1:-73790929 None:intergenic
AAAGAATAAACTCCACTCCA+TGG 0.578056 4_1:-73790885 None:intergenic
ATGATTTATATATTTCGCAA+AGG 0.580470 4_1:+73790245 Msa0571220:CDS
AGGTAAAGATAGAGGTGTTG+GGG 0.581375 4_1:-73788891 None:intergenic
CCAGGAGTTCAGCCATGGAG+TGG 0.591915 4_1:+73790873 Msa0571220:intron
TTTCTACATGAATTGTGACT+GGG 0.592766 4_1:+73791998 Msa0571220:three_prime_UTR
TGAGGGTACCTTAGGTAACC+AGG 0.595164 4_1:+73790921 Msa0571220:CDS
GTAAATTGTACTATCAAGGA+AGG 0.603275 4_1:-73790988 None:intergenic
TTCTGAAACCCAATTGCCAT+AGG 0.610330 4_1:+73792124 Msa0571220:three_prime_UTR
ATACTCATGCCGTTTACATG+CGG 0.618288 4_1:+73789983 Msa0571220:CDS
TTATATATTTCGCAAAGGAG+AGG 0.620757 4_1:+73790250 Msa0571220:CDS
CATTTGTCTGCTAAAAGCAA+AGG 0.624906 4_1:+73789259 Msa0571220:CDS
AAAGGAGGGATTATCTGAAG+AGG 0.627071 4_1:+73789277 Msa0571220:CDS
TTCGTGTAGAAGAAAAGTTG+TGG 0.627662 4_1:+73789232 Msa0571220:intron
GGTGTTGGGGTGAATTGACG+AGG 0.628065 4_1:-73788878 None:intergenic
TGAGATTGGGATAACCTGAT+CGG 0.630126 4_1:-73791256 None:intergenic
TAGCCAAAAGAACTTGTGAG+TGG 0.632547 4_1:-73792069 None:intergenic
TGTCTGCTAAAAGCAAAGGA+GGG 0.635547 4_1:+73789263 Msa0571220:CDS
GGAACTGAGCTTATGTAGTG+AGG 0.643018 4_1:+73791894 Msa0571220:exon
GTGTTGGGGTGAATTGACGA+GGG 0.649898 4_1:-73788877 None:intergenic
GCTCCAATCTCGCTTCTCAG+AGG 0.670450 4_1:+73789099 Msa0571220:CDS
GCTGCGTATAAATATCTCGA+AGG 0.686766 4_1:-73791359 None:intergenic
TTGATAGTACAATTTACACA+AGG 0.690159 4_1:+73790994 Msa0571220:CDS
ACAACCCAGTATCAAATGGG+TGG 0.704834 4_1:+73789329 Msa0571220:CDS
GGGTACCTTAGGTAACCAGG+CGG 0.811298 4_1:+73790924 Msa0571220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAACTAAACTATATT+TGG + chr4_1:73791789-73791808 Msa0571220:intron 10.0%
!! TTATTACTTATTACTGTATT+AGG + chr4_1:73789154-73789173 Msa0571220:intron 15.0%
!!! CTTGTTTTTTTTATAATAGA+TGG - chr4_1:73789579-73789598 None:intergenic 15.0%
!! CATCTATTATAAAAAAAACA+AGG + chr4_1:73789577-73789596 Msa0571220:intron 15.0%
!!! TATCTATTTTTTTCAACATT+AGG + chr4_1:73789719-73789738 Msa0571220:intron 15.0%
!! TTATTCTAACAGTAATTATT+TGG + chr4_1:73790812-73790831 Msa0571220:intron 15.0%
!! TATTCTAACAGTAATTATTT+GGG + chr4_1:73790813-73790832 Msa0571220:intron 15.0%
!! GTTATTAATATTTAATTGTC+AGG + chr4_1:73791179-73791198 Msa0571220:intron 15.0%
!! TATAATTCAGAATATTTGTT+TGG + chr4_1:73791522-73791541 Msa0571220:intron 15.0%
!! ATAATTCAGAATATTTGTTT+GGG + chr4_1:73791523-73791542 Msa0571220:intron 15.0%
!!! ATTTCAGTTTTTATTTTTGA+AGG - chr4_1:73791726-73791745 None:intergenic 15.0%
!!! AATACATCATATTTTTCTAT+TGG + chr4_1:73792353-73792372 Msa0571220:three_prime_UTR 15.0%
!! TAATCATAATGACATGAAAA+TGG - chr4_1:73789190-73789209 None:intergenic 20.0%
!!! AGAACATTTACTTTGTTATT+AGG + chr4_1:73789413-73789432 Msa0571220:intron 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG + chr4_1:73789594-73789613 Msa0571220:intron 20.0%
!! ATTTGAATTCAAATGTTACT+CGG - chr4_1:73789692-73789711 None:intergenic 20.0%
!! AAAATAAAGGAAAAGAGAAT+CGG - chr4_1:73790117-73790136 None:intergenic 20.0%
!!! ACCTTTACTAATTTTGTTTT+AGG + chr4_1:73790181-73790200 Msa0571220:intron 20.0%
!!! CCTTTACTAATTTTGTTTTA+GGG + chr4_1:73790182-73790201 Msa0571220:intron 20.0%
!! ATGATTTATATATTTCGCAA+AGG + chr4_1:73790245-73790264 Msa0571220:CDS 20.0%
!! TTACTGTTAGAATAAAATAC+TGG - chr4_1:73790807-73790826 None:intergenic 20.0%
!! ATTCTAACAGTAATTATTTG+GGG + chr4_1:73790814-73790833 Msa0571220:intron 20.0%
!!! TCTTTTGATATCATTTAATG+AGG + chr4_1:73790903-73790922 Msa0571220:CDS 20.0%
!!! CTTTTGATATCATTTAATGA+GGG + chr4_1:73790904-73790923 Msa0571220:CDS 20.0%
!!! TTAAACATTGTTTTATGCTT+AGG + chr4_1:73791421-73791440 Msa0571220:intron 20.0%
!! ATTATATAGTTTACAGGAAA+GGG - chr4_1:73791508-73791527 None:intergenic 20.0%
!! AATTATATAGTTTACAGGAA+AGG - chr4_1:73791509-73791528 None:intergenic 20.0%
!! TTCTGAATTATATAGTTTAC+AGG - chr4_1:73791514-73791533 None:intergenic 20.0%
!! TAATTCAGAATATTTGTTTG+GGG + chr4_1:73791524-73791543 Msa0571220:intron 20.0%
!! AACTAAACTATATTTGGATT+TGG + chr4_1:73791795-73791814 Msa0571220:intron 20.0%
!! TGGAATAAATATGAGAAATA+TGG - chr4_1:73791965-73791984 None:intergenic 20.0%
!!! GGTATTATTGCTATTTCATT+AGG + chr4_1:73789350-73789369 Msa0571220:CDS 25.0%
! ATTCTAGATGAAATTCATGT+GGG - chr4_1:73789501-73789520 None:intergenic 25.0%
!!! ATTAAACTAGAGAAGTGTTA+AGG - chr4_1:73789553-73789572 None:intergenic 25.0%
!! AGTTTTCATAGAACTTTTCA+AGG - chr4_1:73790026-73790045 None:intergenic 25.0%
! TGAGAGTAACAGAAAAATAA+AGG - chr4_1:73790130-73790149 None:intergenic 25.0%
! CCCTAAAACAAAATTAGTAA+AGG - chr4_1:73790185-73790204 None:intergenic 25.0%
!!! GTTTTAGGGATTAATTAATG+TGG + chr4_1:73790196-73790215 Msa0571220:intron 25.0%
! CAATTCATATTTAACCATAC+AGG + chr4_1:73790338-73790357 Msa0571220:intron 25.0%
!! TTCCTATATACTTTAGTCTT+AGG + chr4_1:73790561-73790580 Msa0571220:intron 25.0%
! ATCCTAAGACTAAAGTATAT+AGG - chr4_1:73790566-73790585 None:intergenic 25.0%
! TTCTAACAGTAATTATTTGG+GGG + chr4_1:73790815-73790834 Msa0571220:intron 25.0%
! TTGTGTAAATTGTACTATCA+AGG - chr4_1:73790995-73791014 None:intergenic 25.0%
!! TTGATAGTACAATTTACACA+AGG + chr4_1:73790994-73791013 Msa0571220:CDS 25.0%
! TAAAAGACCTAATTACACAA+CGG - chr4_1:73791068-73791087 None:intergenic 25.0%
!! TGTAATTAGGTCTTTTAACA+TGG + chr4_1:73791071-73791090 Msa0571220:intron 25.0%
!!! GTCTGATTTTTTTTCCAATT+TGG + chr4_1:73791290-73791309 Msa0571220:intron 25.0%
! TCCTTACATCTTTATATTCT+TGG - chr4_1:73791384-73791403 None:intergenic 25.0%
! TGTAAAATGTATTTGTCTAC+AGG - chr4_1:73791683-73791702 None:intergenic 25.0%
!! TATATTTGGATTTGGTAAAC+AGG + chr4_1:73791803-73791822 Msa0571220:intron 25.0%
!! ATATAAAAAGTGTACCTTGA+AGG - chr4_1:73792261-73792280 None:intergenic 25.0%
AAAGGTAAAGGTAAAGATAG+AGG - chr4_1:73788902-73788921 None:intergenic 30.0%
CATTCTAGATGAAATTCATG+TGG - chr4_1:73789502-73789521 None:intergenic 30.0%
! TAGTCTCTTTTTGTTCTTTC+TGG - chr4_1:73789816-73789835 None:intergenic 30.0%
! TGAAAACTCCTTTTACTTGA+AGG + chr4_1:73790038-73790057 Msa0571220:CDS 30.0%
!! CTTTAGAACCTTCAAGTAAA+AGG - chr4_1:73790049-73790068 None:intergenic 30.0%
!! CTTTTACTTGAAGGTTCTAA+AGG + chr4_1:73790047-73790066 Msa0571220:CDS 30.0%
TTATATATTTCGCAAAGGAG+AGG + chr4_1:73790250-73790269 Msa0571220:CDS 30.0%
TTCTGGATCGATAAATTGAA+GGG + chr4_1:73790296-73790315 Msa0571220:intron 30.0%
! TTAGCATCCACATTTTGTAA+TGG - chr4_1:73790442-73790461 None:intergenic 30.0%
! AAAGCAGTGTTGTTAAATAG+CGG - chr4_1:73790766-73790785 None:intergenic 30.0%
TCTAACAGTAATTATTTGGG+GGG + chr4_1:73790816-73790835 Msa0571220:intron 30.0%
GTAAATTGTACTATCAAGGA+AGG - chr4_1:73790991-73791010 None:intergenic 30.0%
AACATGTGAATAAATGTTGG+TGG - chr4_1:73791033-73791052 None:intergenic 30.0%
!!! CAGTTCATTGTTTTGACAAA+AGG + chr4_1:73791110-73791129 Msa0571220:intron 30.0%
GCCAAGAATATAAAGATGTA+AGG + chr4_1:73791380-73791399 Msa0571220:intron 30.0%
! GTCATTTGTTACACAACTTT+AGG + chr4_1:73791446-73791465 Msa0571220:intron 30.0%
! ATTTGTTACACAACTTTAGG+TGG + chr4_1:73791449-73791468 Msa0571220:intron 30.0%
! TCGAGTAAAATTGAAAGTGT+CGG - chr4_1:73791591-73791610 None:intergenic 30.0%
TATTTATTCCAAATGCTCAC+AGG + chr4_1:73791974-73791993 Msa0571220:intron 30.0%
! TTTTCTACATGAATTGTGAC+TGG + chr4_1:73791997-73792016 Msa0571220:three_prime_UTR 30.0%
TTTCTACATGAATTGTGACT+GGG + chr4_1:73791998-73792017 Msa0571220:three_prime_UTR 30.0%
AAAACTTTCCTATGGCAATT+GGG - chr4_1:73792135-73792154 None:intergenic 30.0%
AAAAACTTTCCTATGGCAAT+TGG - chr4_1:73792136-73792155 None:intergenic 30.0%
AAGCAACAAAAACTTTCCTA+TGG - chr4_1:73792143-73792162 None:intergenic 30.0%
CTGCTATCTGTTTATTGTTT+CGG + chr4_1:73792205-73792224 Msa0571220:three_prime_UTR 30.0%
TGCTATCTGTTTATTGTTTC+GGG + chr4_1:73792206-73792225 Msa0571220:three_prime_UTR 30.0%
ATGTCAAAATCAAACCTTCA+AGG + chr4_1:73792244-73792263 Msa0571220:three_prime_UTR 30.0%
AATGCATTAGCGAGCTAAAA+AGG + chr4_1:73788783-73788802 Msa0571220:five_prime_UTR 35.0%
!! AAGGTAAAGATAGAGGTGTT+GGG - chr4_1:73788895-73788914 None:intergenic 35.0%
! AAAGGTAAAGATAGAGGTGT+TGG - chr4_1:73788896-73788915 None:intergenic 35.0%
CCTTGTAAAGGTAAAGGTAA+AGG - chr4_1:73788914-73788933 None:intergenic 35.0%
CCTTTACCTTTACCTTTACA+AGG + chr4_1:73788911-73788930 Msa0571220:CDS 35.0%
AGGAAATTGAAGTAACTGTC+TGG - chr4_1:73788938-73788957 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG - chr4_1:73789052-73789071 None:intergenic 35.0%
ACTCTCATCTGATTCTTCTT+TGG - chr4_1:73789056-73789075 None:intergenic 35.0%
TTCGTGTAGAAGAAAAGTTG+TGG + chr4_1:73789232-73789251 Msa0571220:intron 35.0%
CATTTGTCTGCTAAAAGCAA+AGG + chr4_1:73789259-73789278 Msa0571220:CDS 35.0%
TACACAACCCAGTATCAAAT+GGG + chr4_1:73789326-73789345 Msa0571220:CDS 35.0%
AATACCACCCATTTGATACT+GGG - chr4_1:73789336-73789355 None:intergenic 35.0%
TAATACCACCCATTTGATAC+TGG - chr4_1:73789337-73789356 None:intergenic 35.0%
ACACTCACACACATTGAATT+GGG + chr4_1:73789455-73789474 Msa0571220:intron 35.0%
TGTGTTCGACATGTTACATT+TGG - chr4_1:73789628-73789647 None:intergenic 35.0%
TACTCGGTTACTCTATCTAT+CGG - chr4_1:73789676-73789695 None:intergenic 35.0%
!! TTTCTGAAACCGCATGTAAA+CGG - chr4_1:73789995-73790014 None:intergenic 35.0%
TTACATGCGGTTTCAGAAAA+AGG + chr4_1:73789996-73790015 Msa0571220:CDS 35.0%
TTTACATGTTGGTGCATACA+TGG - chr4_1:73790092-73790111 None:intergenic 35.0%
ATCTCAAAACGTTCATAAGG+AGG - chr4_1:73790159-73790178 None:intergenic 35.0%
!!! TCCTTATGAACGTTTTGAGA+TGG + chr4_1:73790158-73790177 Msa0571220:intron 35.0%
TCCATCTCAAAACGTTCATA+AGG - chr4_1:73790162-73790181 None:intergenic 35.0%
CTGATTTACATTTCCTCTTC+TGG + chr4_1:73790279-73790298 Msa0571220:intron 35.0%
TCAATTTATCGATCCAGAAG+AGG - chr4_1:73790295-73790314 None:intergenic 35.0%
CTTCTGGATCGATAAATTGA+AGG + chr4_1:73790295-73790314 Msa0571220:intron 35.0%
TTTAACACTCACTCTCTCAT+TGG + chr4_1:73790379-73790398 Msa0571220:intron 35.0%
CTCATTGGATGAAATCAATG+TGG + chr4_1:73790394-73790413 Msa0571220:intron 35.0%
AAAATGAACATAGTTGCTCC+TGG + chr4_1:73790524-73790543 Msa0571220:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG + chr4_1:73790525-73790544 Msa0571220:intron 35.0%
TTGACTAATAGCAGCTATAG+TGG - chr4_1:73790661-73790680 None:intergenic 35.0%
!! GTGATTTGTTCAAATTCCAC+TGG + chr4_1:73790714-73790733 Msa0571220:intron 35.0%
! GGTGGATCAAATGAATTTTG+TGG + chr4_1:73790850-73790869 Msa0571220:intron 35.0%
! ATCAAATGAATTTTGTGGCC+AGG + chr4_1:73790855-73790874 Msa0571220:intron 35.0%
AAAGAATAAACTCCACTCCA+TGG - chr4_1:73790888-73790907 None:intergenic 35.0%
!! TCATTTAATGAGGGTACCTT+AGG + chr4_1:73790913-73790932 Msa0571220:CDS 35.0%
GGCAACATGTGAATAAATGT+TGG - chr4_1:73791036-73791055 None:intergenic 35.0%
!! GGTCTTTTAACATGGTTTGT+TGG + chr4_1:73791079-73791098 Msa0571220:intron 35.0%
GAATTTCCATGAAAGCTCTA+AGG + chr4_1:73791205-73791224 Msa0571220:CDS 35.0%
TATACTCCTTAGAGCTTTCA+TGG - chr4_1:73791214-73791233 None:intergenic 35.0%
ACATAACAGACCATGAGATT+GGG - chr4_1:73791272-73791291 None:intergenic 35.0%
! TTGGATTTGGTAAACAGGTA+TGG + chr4_1:73791808-73791827 Msa0571220:intron 35.0%
AATGAAGAGACAGTGATTTC+AGG - chr4_1:73791857-73791876 None:intergenic 35.0%
!! TCCTCTTCTTTTTAGGAACA+AGG + chr4_1:73792023-73792042 Msa0571220:three_prime_UTR 35.0%
TCCTTGTTCCTAAAAAGAAG+AGG - chr4_1:73792027-73792046 None:intergenic 35.0%
!! CTTCTTTTTAGGAACAAGGA+AGG + chr4_1:73792027-73792046 Msa0571220:three_prime_UTR 35.0%
! TTTCCACTCACAAGTTCTTT+TGG + chr4_1:73792066-73792085 Msa0571220:three_prime_UTR 35.0%
TTCTTAAAGCTCAATGTGTC+TGG + chr4_1:73792180-73792199 Msa0571220:three_prime_UTR 35.0%
CGAAACAATAAACAGATAGC+AGG - chr4_1:73792207-73792226 None:intergenic 35.0%
TGAAAAGGTTACACTGTGTT+AGG - chr4_1:73792294-73792313 None:intergenic 35.0%
!! AGGTAAAGATAGAGGTGTTG+GGG - chr4_1:73788894-73788913 None:intergenic 40.0%
TCTGGACCTTGTAAAGGTAA+AGG - chr4_1:73788920-73788939 None:intergenic 40.0%
TAACTGTCTGGACCTTGTAA+AGG - chr4_1:73788926-73788945 None:intergenic 40.0%
CTCAATTCAATGCATGCATG+CGG - chr4_1:73788970-73788989 None:intergenic 40.0%
!!! TTTCTTTTTCAGCATGCCAG+TGG + chr4_1:73789012-73789031 Msa0571220:intron 40.0%
TTGTCTGCTAAAAGCAAAGG+AGG + chr4_1:73789262-73789281 Msa0571220:CDS 40.0%
TGTCTGCTAAAAGCAAAGGA+GGG + chr4_1:73789263-73789282 Msa0571220:CDS 40.0%
AAAGGAGGGATTATCTGAAG+AGG + chr4_1:73789277-73789296 Msa0571220:CDS 40.0%
GTACACAACCCAGTATCAAA+TGG + chr4_1:73789325-73789344 Msa0571220:CDS 40.0%
CACACTCACACACATTGAAT+TGG + chr4_1:73789454-73789473 Msa0571220:intron 40.0%
TTTACTCTCATGTTCCCAAG+TGG - chr4_1:73789790-73789809 None:intergenic 40.0%
TTAAGAGATGCTAGACGCAT+AGG - chr4_1:73789858-73789877 None:intergenic 40.0%
TGTAAACGGCATGAGTATAG+TGG - chr4_1:73789981-73790000 None:intergenic 40.0%
! ATACTCATGCCGTTTACATG+CGG + chr4_1:73789983-73790002 Msa0571220:CDS 40.0%
! GAGAATCGGTGTTTACATGT+TGG - chr4_1:73790103-73790122 None:intergenic 40.0%
!! GTTTTGTTAGCACTCCTGTA+TGG - chr4_1:73790355-73790374 None:intergenic 40.0%
!! GTAATGGATCCCACATAAAG+TGG - chr4_1:73790426-73790445 None:intergenic 40.0%
GTGGGATCCATTACAAAATG+TGG + chr4_1:73790432-73790451 Msa0571220:intron 40.0%
CATAAAATCTGCTTTCCCCT+AGG - chr4_1:73790484-73790503 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG - chr4_1:73790545-73790564 None:intergenic 40.0%
!!! ACCACTTTTTCCACGATTAG+CGG - chr4_1:73790603-73790622 None:intergenic 40.0%
AACAGTAATTATTTGGGGGG+TGG + chr4_1:73790819-73790838 Msa0571220:intron 40.0%
ACAGTAATTATTTGGGGGGT+GGG + chr4_1:73790820-73790839 Msa0571220:intron 40.0%
ATTACACAACGGCTAACACA+AGG - chr4_1:73791057-73791076 None:intergenic 40.0%
GTGTTAGCCGTTGTGTAATT+AGG + chr4_1:73791058-73791077 Msa0571220:intron 40.0%
!! AGCTCTAAGGAGTATACTCA+TGG + chr4_1:73791218-73791237 Msa0571220:CDS 40.0%
TGAGATTGGGATAACCTGAT+CGG - chr4_1:73791259-73791278 None:intergenic 40.0%
ATCAGGTTATCCCAATCTCA+TGG + chr4_1:73791259-73791278 Msa0571220:intron 40.0%
GACATAACAGACCATGAGAT+TGG - chr4_1:73791273-73791292 None:intergenic 40.0%
GCTGCGTATAAATATCTCGA+AGG - chr4_1:73791362-73791381 None:intergenic 40.0%
GTTACACAACTTTAGGTGGA+AGG + chr4_1:73791453-73791472 Msa0571220:intron 40.0%
!! GTGGAAGGTAGCTTGTTAAA+TGG + chr4_1:73791468-73791487 Msa0571220:intron 40.0%
! GTTTGGGGATCATTTTCTCT+TGG + chr4_1:73791539-73791558 Msa0571220:intron 40.0%
GACAGTGATTTCAGGACAAT+AGG - chr4_1:73791849-73791868 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG + chr4_1:73791872-73791891 Msa0571220:CDS 40.0%
CATTTCTCTGTTGATCCAGT+GGG + chr4_1:73791873-73791892 Msa0571220:CDS 40.0%
AACTTGCCATATGCTTCAAG+TGG + chr4_1:73791936-73791955 Msa0571220:intron 40.0%
GTAGAAAACCTGTGAGCATT+TGG - chr4_1:73791985-73792004 None:intergenic 40.0%
! CTGGGTTTCCTCTTCTTTTT+AGG + chr4_1:73792016-73792035 Msa0571220:three_prime_UTR 40.0%
TTGTGAGTGGAAATAGAAGC+AGG - chr4_1:73792059-73792078 None:intergenic 40.0%
TAGCCAAAAGAACTTGTGAG+TGG - chr4_1:73792072-73792091 None:intergenic 40.0%
GCAATTGGGTTTCAGAATGT+CGG - chr4_1:73792121-73792140 None:intergenic 40.0%
!! TTCTGAAACCCAATTGCCAT+AGG + chr4_1:73792124-73792143 Msa0571220:three_prime_UTR 40.0%
CATGCATGCGGTAACTAATG+AGG - chr4_1:73788958-73788977 None:intergenic 45.0%
! TTTTCAGCATGCCAGTGGAA+TGG + chr4_1:73789017-73789036 Msa0571220:intron 45.0%
! TTTCCTCTGAGAAGCGAGAT+TGG - chr4_1:73789105-73789124 None:intergenic 45.0%
ATCTCGCTTCTCAGAGGAAA+AGG + chr4_1:73789105-73789124 Msa0571220:CDS 45.0%
ACAACCCAGTATCAAATGGG+TGG + chr4_1:73789329-73789348 Msa0571220:CDS 45.0%
TGGATCCCACCACTTTATGT+GGG + chr4_1:73790414-73790433 Msa0571220:intron 45.0%
TGGATCCCACATAAAGTGGT+GGG - chr4_1:73790422-73790441 None:intergenic 45.0%
ATGGATCCCACATAAAGTGG+TGG - chr4_1:73790423-73790442 None:intergenic 45.0%
TGGATGCTAACATGCCTCTT+TGG + chr4_1:73790452-73790471 Msa0571220:intron 45.0%
ATCTGCTTTCCCCTAGGTTA+TGG - chr4_1:73790478-73790497 None:intergenic 45.0%
GTGTTATCAACCGCTAATCG+TGG + chr4_1:73790590-73790609 Msa0571220:intron 45.0%
ACCGCTAATCGTGGAAAAAG+TGG + chr4_1:73790599-73790618 Msa0571220:intron 45.0%
CCTATAATGCGACATTCCAG+TGG - chr4_1:73790733-73790752 None:intergenic 45.0%
CCACTGGAATGTCGCATTAT+AGG + chr4_1:73790730-73790749 Msa0571220:intron 45.0%
CAGTAATTATTTGGGGGGTG+GGG + chr4_1:73790821-73790840 Msa0571220:intron 45.0%
AGTAATTATTTGGGGGGTGG+GGG + chr4_1:73790822-73790841 Msa0571220:intron 45.0%
ATCTCTGGCAACAGTGATGT+TGG + chr4_1:73790960-73790979 Msa0571220:CDS 45.0%
GTAGTGATACGATTCCGATC+AGG + chr4_1:73791242-73791261 Msa0571220:CDS 45.0%
ATTGGTTAGCGCGACCAAAT+TGG - chr4_1:73791307-73791326 None:intergenic 45.0%
GTGATTTCAGGACAATAGGC+TGG - chr4_1:73791845-73791864 None:intergenic 45.0%
TACATAAGCTCAGTTCCCAC+TGG - chr4_1:73791891-73791910 None:intergenic 45.0%
GGAACTGAGCTTATGTAGTG+AGG + chr4_1:73791894-73791913 Msa0571220:exon 45.0%
!! AAAATAAAATTATATTGAAA+AGG - chr4_1:73792309-73792328 None:intergenic 5.0%
!!! TTTTCAATATAATTTTATTT+TGG + chr4_1:73792308-73792327 Msa0571220:three_prime_UTR 5.0%
GTGTTGGGGTGAATTGACGA+GGG - chr4_1:73788880-73788899 None:intergenic 50.0%
GGCTCTTGAATCCATTCCAC+TGG - chr4_1:73789031-73789050 None:intergenic 50.0%
GAGAAGCGAGATTGGAGCTT+TGG - chr4_1:73789097-73789116 None:intergenic 50.0%
ACTCACACGTACCAACCACT+TGG + chr4_1:73789772-73789791 Msa0571220:intron 50.0%
CTCACACGTACCAACCACTT+GGG + chr4_1:73789773-73789792 Msa0571220:intron 50.0%
CTCTCATGTTCCCAAGTGGT+TGG - chr4_1:73789786-73789805 None:intergenic 50.0%
ATGACCTTGTTGCTCCTGCA+GGG + chr4_1:73789932-73789951 Msa0571220:intron 50.0%
ACGGCATGAGTATAGTGGTC+AGG - chr4_1:73789976-73789995 None:intergenic 50.0%
GTGGATCCCACCACTTTATG+TGG + chr4_1:73790413-73790432 Msa0571220:intron 50.0%
TGCCTCTTTGGCCATAACCT+AGG + chr4_1:73790464-73790483 Msa0571220:intron 50.0%
GCCTCTTTGGCCATAACCTA+GGG + chr4_1:73790465-73790484 Msa0571220:intron 50.0%
CCTCTTTGGCCATAACCTAG+GGG + chr4_1:73790466-73790485 Msa0571220:intron 50.0%
CATAGTTGCTCCTGGGTTCT+AGG + chr4_1:73790532-73790551 Msa0571220:intron 50.0%
AGCAGCTATAGTGGCGCTAT+AGG - chr4_1:73790652-73790671 None:intergenic 50.0%
!! TGAGGGTACCTTAGGTAACC+AGG + chr4_1:73790921-73790940 Msa0571220:CDS 50.0%
ATGTTCCGCCTGGTTACCTA+AGG - chr4_1:73790932-73790951 None:intergenic 50.0%
TTTGGTCGCGCTAACCAATC+TGG + chr4_1:73791308-73791327 Msa0571220:intron 50.0%
GATGACGTCATGCACCAGAT+TGG - chr4_1:73791325-73791344 None:intergenic 50.0%
! TGGCTGCCACTTGAAGCATA+TGG - chr4_1:73791945-73791964 None:intergenic 50.0%
! GGTGTTGGGGTGAATTGACG+AGG - chr4_1:73788881-73788900 None:intergenic 55.0%
GCTCCAATCTCGCTTCTCAG+AGG + chr4_1:73789099-73789118 Msa0571220:CDS 55.0%
GATGACCTTGTTGCTCCTGC+AGG + chr4_1:73789931-73789950 Msa0571220:intron 55.0%
CCCCTAGGTTATGGCCAAAG+AGG - chr4_1:73790469-73790488 None:intergenic 55.0%
GGGTACCTTAGGTAACCAGG+CGG + chr4_1:73790924-73790943 Msa0571220:CDS 55.0%
TAACCAGGCGGAACATGCAC+TGG + chr4_1:73790936-73790955 Msa0571220:CDS 55.0%
! GGAACATGCACTGGCATCTC+TGG + chr4_1:73790945-73790964 Msa0571220:CDS 55.0%
TGAGCAGAAACACGCCCTGC+AGG - chr4_1:73789949-73789968 None:intergenic 60.0%
TTATTTGGGGGGTGGGGGTC+TGG + chr4_1:73790827-73790846 Msa0571220:intron 60.0%
TATTTGGGGGGTGGGGGTCT+GGG + chr4_1:73790828-73790847 Msa0571220:intron 60.0%
TGTGGCCAGGAGTTCAGCCA+TGG + chr4_1:73790868-73790887 Msa0571220:intron 60.0%
CCACTCCATGGCTGAACTCC+TGG - chr4_1:73790876-73790895 None:intergenic 60.0%
CCAGGAGTTCAGCCATGGAG+TGG + chr4_1:73790873-73790892 Msa0571220:intron 60.0%
ATGCCAGTGCATGTTCCGCC+TGG - chr4_1:73790942-73790961 None:intergenic 60.0%
CACGCCCTGCAGGAGCAACA+AGG - chr4_1:73789939-73789958 None:intergenic 65.0%
ATTTGGGGGGTGGGGGTCTG+GGG + chr4_1:73790829-73790848 Msa0571220:intron 65.0%
! TGGGGGGTGGGGGTCTGGGG+TGG + chr4_1:73790832-73790851 Msa0571220:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 73788781 73792388 73788781 ID=Msa0571220;Name=Msa0571220
chr4_1 mRNA 73788781 73792388 73788781 ID=Msa0571220-mRNA-1;Parent=Msa0571220;Name=Msa0571220-mRNA-1;_AED=0.23;_eAED=0.23;_QI=52|1|1|1|0.88|0.8|10|407|291
chr4_1 exon 73788781 73788932 73788781 ID=Msa0571220-mRNA-1:exon:25329;Parent=Msa0571220-mRNA-1
chr4_1 exon 73789024 73789126 73789024 ID=Msa0571220-mRNA-1:exon:25330;Parent=Msa0571220-mRNA-1
chr4_1 exon 73789241 73789371 73789241 ID=Msa0571220-mRNA-1:exon:25331;Parent=Msa0571220-mRNA-1
chr4_1 exon 73789953 73790092 73789953 ID=Msa0571220-mRNA-1:exon:25332;Parent=Msa0571220-mRNA-1
chr4_1 exon 73790203 73790271 73790203 ID=Msa0571220-mRNA-1:exon:25333;Parent=Msa0571220-mRNA-1
chr4_1 exon 73790877 73791015 73790877 ID=Msa0571220-mRNA-1:exon:25334;Parent=Msa0571220-mRNA-1
chr4_1 exon 73791201 73791263 73791201 ID=Msa0571220-mRNA-1:exon:25335;Parent=Msa0571220-mRNA-1
chr4_1 exon 73791353 73791396 73791353 ID=Msa0571220-mRNA-1:exon:25336;Parent=Msa0571220-mRNA-1
chr4_1 exon 73791825 73791925 73791825 ID=Msa0571220-mRNA-1:exon:25337;Parent=Msa0571220-mRNA-1
chr4_1 exon 73791996 73792388 73791996 ID=Msa0571220-mRNA-1:exon:25338;Parent=Msa0571220-mRNA-1
chr4_1 five_prime_UTR 73788781 73788832 73788781 ID=Msa0571220-mRNA-1:five_prime_utr;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73788833 73788932 73788833 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73789024 73789126 73789024 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73789241 73789371 73789241 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73789953 73790092 73789953 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73790203 73790271 73790203 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73790877 73791015 73790877 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73791201 73791263 73791201 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73791353 73791396 73791353 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 CDS 73791825 73791911 73791825 ID=Msa0571220-mRNA-1:cds;Parent=Msa0571220-mRNA-1
chr4_1 three_prime_UTR 73791912 73791925 73791912 ID=Msa0571220-mRNA-1:three_prime_utr;Parent=Msa0571220-mRNA-1
chr4_1 three_prime_UTR 73791996 73792388 73791996 ID=Msa0571220-mRNA-1:three_prime_utr;Parent=Msa0571220-mRNA-1
Gene Sequence

>Msa0571220

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTTTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTTACCTTTACAAGCATGCCAGTGGAATGGATTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTCTCAGAGGAAAAGAAGAAAAGTTGTGGAGCACATTTGTCTGCTAAAAGCAAAGGAGGGATTATCTGAAGAGGAAGAGAATGACATGCTTGATTATTTGTACACAACCCAGTATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCCGTTTACATGCGGTTTCAGAAAAAGGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTAAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGAGTTCAGCCATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCCATGAAAGCTCTAAGGAGTATACTCATGGAGTAGTGATACGATTCCGATCAGTTGATGCCTTCGAGATATTTATACGCAGCCAAGAATATAAAGATGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTGTCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGCTTATGTAG

Protein sequence

>Msa0571220

MSFAMQCSNYSSFCFPRQFTPTPLSLPLPLPLQACQWNGFKSQPKKNQMRVFCSSDDQSSNLASQRKRRKVVEHICLLKAKEGLSEEEENDMLDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKKENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFRKGEEFSHGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFHESSKEYTHGVVIRFRSVDAFEIFIRSQEYKDVWISKFQPIVLKSLSLHFSVDPVGTELM*