AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225050 MtrunA17_Chr2g0331311 95.770 331 14 0 8 338 17 347 0.0 662
Msa0225050 MtrunA17_Chr7g0253651 65.868 334 113 1 5 337 15 348 1.04e-167 471
Msa0225050 MtrunA17_Chr2g0310111 62.500 328 121 2 8 335 21 346 5.77e-156 441
Msa0225050 MtrunA17_Chr8g0356981 64.565 333 115 3 2 334 9 338 2.40e-153 434
Msa0225050 MtrunA17_Chr2g0304231 57.778 315 132 1 18 332 30 343 2.41e-133 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225050 AT3G12740.1 64.024 328 116 2 8 335 23 348 3.02e-156 442
Msa0225050 AT1G54320.1 62.195 328 122 2 8 335 22 347 5.23e-153 434
Msa0225050 AT1G79450.1 61.631 331 125 2 8 338 22 350 2.17e-150 427
Msa0225050 AT1G16360.2 61.280 328 125 2 8 335 22 347 5.99e-150 426
Msa0225050 AT1G16360.1 61.442 319 121 2 17 335 17 333 7.35e-146 415
Msa0225050 AT1G16360.4 60.526 304 118 2 17 320 17 318 1.06e-135 389
Msa0225050 AT1G79450.2 61.649 279 105 2 60 338 7 283 3.20e-124 358
Msa0225050 AT5G46150.1 54.921 315 138 2 18 332 28 338 1.81e-118 346
Msa0225050 AT5G46150.2 54.921 315 138 2 18 332 28 338 1.81e-118 346
Msa0225050 AT5G46150.3 55.116 303 135 1 18 320 28 329 2.44e-115 337
Msa0225050 AT1G16360.3 55.024 209 92 2 17 225 17 223 2.37e-79 242
Msa0225050 AT1G16360.5 55.024 209 92 2 17 225 17 223 2.37e-79 242
Msa0225050 AT5G46150.4 52.174 207 98 1 18 224 28 233 1.53e-73 228

Find 70 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCATTGTTCAATAT+TGG 0.255001 2_1:-75073835 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 2_1:+75074672 Msa0225050:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2_1:+75076246 Msa0225050:CDS
CTTGTAATATATTTGCAAAA+AGG 0.313951 2_1:-75076744 None:intergenic
ATTGCCACATTTACTGCAAT+TGG 0.348370 2_1:+75074651 Msa0225050:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2_1:+75075665 Msa0225050:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2_1:-75074399 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2_1:-75075558 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2_1:-75074687 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2_1:+75076016 Msa0225050:CDS
TAACTGTAATGGAGTGGTTA+AGG 0.402936 2_1:-75073921 None:intergenic
GGGATTGCATACCTTGTTGT+TGG 0.410908 2_1:+75076219 Msa0225050:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2_1:+75075668 Msa0225050:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2_1:+75076057 Msa0225050:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2_1:+75074905 Msa0225050:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2_1:+75076181 Msa0225050:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2_1:-75075512 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2_1:+75075519 Msa0225050:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2_1:+75076138 Msa0225050:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2_1:-75074387 None:intergenic
GGGATCCATCCTACTTATCA+TGG 0.480170 2_1:+75076589 Msa0225050:CDS
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2_1:+75076222 Msa0225050:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2_1:-75074899 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2_1:+75076177 Msa0225050:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2_1:+75076603 Msa0225050:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2_1:-75074025 None:intergenic
TTTGATAGTAATTATCAAGC+TGG 0.503169 2_1:-75075056 None:intergenic
ATTAAGTTACATTAACATGA+TGG 0.504743 2_1:-75073948 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2_1:-75076594 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2_1:-75076598 None:intergenic
GTTGCGGTGGGGAAATGAAA+TGG 0.512806 2_1:+75073811 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2_1:+75076152 Msa0225050:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2_1:-75074686 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2_1:+75074398 Msa0225050:CDS
ATGATGGAGAATAACTGTAA+TGG 0.524774 2_1:-75073932 None:intergenic
GTGAAAGATCGCAACCATGA+TGG 0.527489 2_1:+75074011 Msa0225050:five_prime_UTR
TGGTTCTATCAACTACAACT+TGG 0.538526 2_1:+75076172 Msa0225050:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2_1:-75074918 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2_1:+75076058 Msa0225050:CDS
TGTTAATACGAAATGATGAA+AGG 0.542675 2_1:-75073974 None:intergenic
GATATGACTTCATCAAAAGA+TGG 0.544518 2_1:+75074033 Msa0225050:exon
AACCAATTCTAACACCTGGA+TGG 0.544797 2_1:+75074397 Msa0225050:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2_1:-75074411 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2_1:+75076180 Msa0225050:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2_1:-75074857 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2_1:+75075487 Msa0225050:CDS
TTGTGGCGTAAGTCAGCTGA+AGG 0.559346 2_1:+75075443 Msa0225050:CDS
TATACACTCATGTTCCATGT+TGG 0.563249 2_1:-75076706 None:intergenic
CTCCATGCAATGAGGCCACA+AGG 0.565861 2_1:-75075521 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.580136 2_1:+75076002 Msa0225050:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2_1:+75074393 Msa0225050:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2_1:-75076250 None:intergenic
TATTGAACAATGAAATTGTG+CGG 0.595448 2_1:+75073839 Msa0225050:five_prime_UTR
ATTACTATCAAAATCATCGC+CGG 0.596581 2_1:+75075067 Msa0225050:CDS
GATTCCAATTGCAGTAAATG+TGG 0.597750 2_1:-75074655 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2_1:+75076277 Msa0225050:CDS
CACAGCAAGAACTACCTGCA+TGG 0.603633 2_1:+75074373 Msa0225050:CDS
AGTTCTTTGTGTGACCAACA+TGG 0.608600 2_1:+75076692 Msa0225050:three_prime_UTR
GTAGAAATGATAAGCAGTTG+TGG 0.621716 2_1:+75075426 Msa0225050:CDS
TGTACTAACAATCCATTTGT+GGG 0.623733 2_1:-75074917 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2_1:+75076604 Msa0225050:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2_1:-75076230 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2_1:-75074856 None:intergenic
GATCCAGTAGACAAAACAGA+AGG 0.655095 2_1:+75075482 Msa0225050:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2_1:-75075529 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2_1:+75075506 Msa0225050:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2_1:+75076142 Msa0225050:CDS
TGTGGCGTAAGTCAGCTGAA+GGG 0.686602 2_1:+75075444 Msa0225050:CDS
GGAGAATAACTGTAATGGAG+TGG 0.702814 2_1:-75073927 None:intergenic
AAGTAGGATGGATCCCCAAG+AGG 0.710797 2_1:-75076582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGACAAAAATTATATTT+TGG - chr2_1:75074508-75074527 None:intergenic 10.0%
!! ATTAAAATCTTGGAAAATTT+AGG + chr2_1:75074260-75074279 Msa0225050:intron 15.0%
!! TTAAAATCTTGGAAAATTTA+GGG + chr2_1:75074261-75074280 Msa0225050:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG + chr2_1:75074511-75074530 Msa0225050:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG + chr2_1:75074772-75074791 Msa0225050:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG + chr2_1:75076472-75076491 Msa0225050:intron 15.0%
!! ACAATTTCATTGTTCAATAT+TGG - chr2_1:75073838-75073857 None:intergenic 20.0%
!! ATTAAGTTACATTAACATGA+TGG - chr2_1:75073951-75073970 None:intergenic 20.0%
!!! ATTTTCCAAGATTTTAATAC+AGG - chr2_1:75074258-75074277 None:intergenic 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG - chr2_1:75074583-75074602 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG + chr2_1:75074626-75074645 Msa0225050:intron 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG + chr2_1:75074967-75074986 Msa0225050:intron 20.0%
!! ACGAATTATTATTTCCATTT+AGG - chr2_1:75074984-75075003 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG + chr2_1:75075097-75075116 Msa0225050:intron 20.0%
!! AACAAAAACAAATTTACTTG+AGG + chr2_1:75075305-75075324 Msa0225050:intron 20.0%
!! ATCATCCAAAATCATATTAA+AGG - chr2_1:75075383-75075402 None:intergenic 20.0%
!! AGTGACAAAAATTCTAAATT+TGG + chr2_1:75075620-75075639 Msa0225050:CDS 20.0%
!! GTTCTGATAAAATTTATGTT+AGG + chr2_1:75076460-75076479 Msa0225050:intron 20.0%
!! CTTGTAATATATTTGCAAAA+AGG - chr2_1:75076747-75076766 None:intergenic 20.0%
! TATTGAACAATGAAATTGTG+CGG + chr2_1:75073839-75073858 Msa0225050:five_prime_UTR 25.0%
!!! TTGTTTGTTTTATCAAACGT+TGG - chr2_1:75073869-75073888 None:intergenic 25.0%
! TGTTAATACGAAATGATGAA+AGG - chr2_1:75073977-75073996 None:intergenic 25.0%
!! TCTTGAAGTTTTCTTTGAAT+TGG - chr2_1:75074069-75074088 None:intergenic 25.0%
! GCAAATTAAGACATACATTT+AGG - chr2_1:75074094-75074113 None:intergenic 25.0%
!!! ATTGTTTCAAGTTACATCAT+AGG - chr2_1:75074176-75074195 None:intergenic 25.0%
!! TTTGATAGTAATTATCAAGC+TGG - chr2_1:75075059-75075078 None:intergenic 25.0%
!! TGATGCCTTTAATATGATTT+TGG + chr2_1:75075375-75075394 Msa0225050:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG + chr2_1:75075653-75075672 Msa0225050:CDS 25.0%
! TTAAACTGTTTATCCAAACA+GGG - chr2_1:75075725-75075744 None:intergenic 25.0%
! ATTAAACTGTTTATCCAAAC+AGG - chr2_1:75075726-75075745 None:intergenic 25.0%
! GTTTATACGTAAGTACTTAT+AGG - chr2_1:75075764-75075783 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG + chr2_1:75076315-75076334 Msa0225050:intron 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG + chr2_1:75076505-75076524 Msa0225050:intron 25.0%
! ATGATGGAGAATAACTGTAA+TGG - chr2_1:75073935-75073954 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG + chr2_1:75074033-75074052 Msa0225050:exon 30.0%
! TGAAGTTTTCTTTGAATTGG+AGG - chr2_1:75074066-75074085 None:intergenic 30.0%
ACATCATAGGAAGAAAAAGA+AGG - chr2_1:75074163-75074182 None:intergenic 30.0%
CATTTGTTCCTTGTGATTTA+CGG + chr2_1:75074230-75074249 Msa0225050:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG + chr2_1:75074514-75074533 Msa0225050:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG - chr2_1:75074561-75074580 None:intergenic 30.0%
! TTGCATCATTGTTTTCATCA+GGG + chr2_1:75074697-75074716 Msa0225050:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG + chr2_1:75074792-75074811 Msa0225050:intron 30.0%
TAAAGAAATACTAATGCAGG+TGG + chr2_1:75074795-75074814 Msa0225050:intron 30.0%
TGTACTAACAATCCATTTGT+GGG - chr2_1:75074920-75074939 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG - chr2_1:75074921-75074940 None:intergenic 30.0%
TAATTCGTTGCAAACTTTAC+AGG + chr2_1:75074996-75075015 Msa0225050:intron 30.0%
ATTACTATCAAAATCATCGC+CGG + chr2_1:75075067-75075086 Msa0225050:CDS 30.0%
! TGACACCTACAAATTTTCAA+TGG + chr2_1:75075553-75075572 Msa0225050:CDS 30.0%
GTTGTCCATTGAAAATTTGT+AGG - chr2_1:75075561-75075580 None:intergenic 30.0%
! CAAATTTTCAATGGACAACA+AGG + chr2_1:75075562-75075581 Msa0225050:CDS 30.0%
TCAACAAAAAGAACATAGCA+TGG + chr2_1:75075594-75075613 Msa0225050:CDS 30.0%
CAACAAAAAGAACATAGCAT+GGG + chr2_1:75075595-75075614 Msa0225050:CDS 30.0%
AACAAAAAGAACATAGCATG+GGG + chr2_1:75075596-75075615 Msa0225050:CDS 30.0%
!!! TTTCCACAAGCTTTTTCAAA+CGG + chr2_1:75075884-75075903 Msa0225050:intron 30.0%
CAACTTTCAGAAAACTGTAT+GGG + chr2_1:75076058-75076077 Msa0225050:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG - chr2_1:75076297-75076316 None:intergenic 30.0%
! TTGAATACGCTCTTTTCTAT+TGG + chr2_1:75076424-75076443 Msa0225050:intron 30.0%
ATTTCTGTTCCATGATAAGT+AGG - chr2_1:75076601-75076620 None:intergenic 30.0%
! TAACTGTAATGGAGTGGTTA+AGG - chr2_1:75073924-75073943 None:intergenic 35.0%
TGATGAAGTCATATCCATCA+TGG - chr2_1:75074028-75074047 None:intergenic 35.0%
CGTAAATCACAAGGAACAAA+TGG - chr2_1:75074232-75074251 None:intergenic 35.0%
! TTAGTGCATGTTTGAAACCA+CGG + chr2_1:75074447-75074466 Msa0225050:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG + chr2_1:75074651-75074670 Msa0225050:CDS 35.0%
GATTCCAATTGCAGTAAATG+TGG - chr2_1:75074658-75074677 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG + chr2_1:75074672-75074691 Msa0225050:CDS 35.0%
ACAATGATGCAAGACCAATA+GGG - chr2_1:75074689-75074708 None:intergenic 35.0%
AACAATGATGCAAGACCAAT+AGG - chr2_1:75074690-75074709 None:intergenic 35.0%
! CTTGCATCATTGTTTTCATC+AGG + chr2_1:75074696-75074715 Msa0225050:CDS 35.0%
! ATCATTGTTTTCATCAGGGA+AGG + chr2_1:75074701-75074720 Msa0225050:CDS 35.0%
AGCTGGTAGTAGATAAAAAC+AGG - chr2_1:75075042-75075061 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG - chr2_1:75075089-75075108 None:intergenic 35.0%
GTGTTATCAATTACGGATCA+CGG + chr2_1:75075104-75075123 Msa0225050:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG + chr2_1:75075426-75075445 Msa0225050:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG - chr2_1:75075488-75075507 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG + chr2_1:75075487-75075506 Msa0225050:CDS 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG - chr2_1:75075659-75075678 None:intergenic 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG + chr2_1:75075656-75075675 Msa0225050:CDS 35.0%
AACAAGAGGATCTGATTGTT+TGG + chr2_1:75076016-75076035 Msa0225050:CDS 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG - chr2_1:75076060-75076079 None:intergenic 35.0%
CCAACTTTCAGAAAACTGTA+TGG + chr2_1:75076057-75076076 Msa0225050:CDS 35.0%
TACAACACATACGAGTTTCA+AGG + chr2_1:75076138-75076157 Msa0225050:CDS 35.0%
! TGGTTCTATCAACTACAACT+TGG + chr2_1:75076172-75076191 Msa0225050:CDS 35.0%
CTATCAACTACAACTTGGAT+TGG + chr2_1:75076177-75076196 Msa0225050:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG + chr2_1:75076197-75076216 Msa0225050:CDS 35.0%
GGTGGGAAAAATAGATTCTT+GGG + chr2_1:75076198-75076217 Msa0225050:CDS 35.0%
GTGGGAAAAATAGATTCTTG+GGG + chr2_1:75076199-75076218 Msa0225050:CDS 35.0%
TTATCATGGAACAGAAATCC+AGG + chr2_1:75076603-75076622 Msa0225050:CDS 35.0%
TATCATGGAACAGAAATCCA+GGG + chr2_1:75076604-75076623 Msa0225050:CDS 35.0%
!!! AGACATCATTTTAAGATCCC+TGG - chr2_1:75076624-75076643 None:intergenic 35.0%
TATACACTCATGTTCCATGT+TGG - chr2_1:75076709-75076728 None:intergenic 35.0%
! GGAGAATAACTGTAATGGAG+TGG - chr2_1:75073930-75073949 None:intergenic 40.0%
CGGAGCCTGTATTAAAATCT+TGG + chr2_1:75074250-75074269 Msa0225050:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG + chr2_1:75074268-75074287 Msa0225050:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG - chr2_1:75074390-75074409 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG + chr2_1:75074393-75074412 Msa0225050:CDS 40.0%
AACCAATTCTAACACCTGGA+TGG + chr2_1:75074397-75074416 Msa0225050:CDS 40.0%
ACCAATTCTAACACCTGGAT+GGG + chr2_1:75074398-75074417 Msa0225050:CDS 40.0%
GTTGCATATTATACCCATCC+AGG - chr2_1:75074414-75074433 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG + chr2_1:75074798-75074817 Msa0225050:intron 40.0%
ACTGCATCTTTAGCATCAGA+GGG - chr2_1:75074859-75074878 None:intergenic 40.0%
AACTGCATCTTTAGCATCAG+AGG - chr2_1:75074860-75074879 None:intergenic 40.0%
TCATTGAAAATCGTGCTGTG+AGG - chr2_1:75075285-75075304 None:intergenic 40.0%
! TTTTGTCTACTGGATCACAG+TGG - chr2_1:75075478-75075497 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG + chr2_1:75075482-75075501 Msa0225050:CDS 40.0%
TGAACATACTCCATGCAATG+AGG - chr2_1:75075532-75075551 None:intergenic 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG + chr2_1:75075665-75075684 Msa0225050:CDS 40.0%
TTATCCAAACAGGGACTTAC+AGG - chr2_1:75075716-75075735 None:intergenic 40.0%
TGACCGTTTGAAAAAGCTTG+TGG - chr2_1:75075890-75075909 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG + chr2_1:75076142-75076161 Msa0225050:CDS 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG + chr2_1:75076152-75076171 Msa0225050:CDS 40.0%
! TCAACTACAACTTGGATTGG+TGG + chr2_1:75076180-75076199 Msa0225050:CDS 40.0%
!! CAACTACAACTTGGATTGGT+GGG + chr2_1:75076181-75076200 Msa0225050:CDS 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG + chr2_1:75076222-75076241 Msa0225050:CDS 40.0%
CTATCCTTGTTCTGTGCTAT+AGG + chr2_1:75076246-75076265 Msa0225050:CDS 40.0%
GAATCCTATAGCACAGAACA+AGG - chr2_1:75076253-75076272 None:intergenic 40.0%
TTCTGTATGTGATCAAGCCA+AGG + chr2_1:75076277-75076296 Msa0225050:CDS 40.0%
ATGTGATCAAGCCAAGGTAA+AGG + chr2_1:75076283-75076302 Msa0225050:intron 40.0%
CTGTTCCATGATAAGTAGGA+TGG - chr2_1:75076597-75076616 None:intergenic 40.0%
AGTTCTTTGTGTGACCAACA+TGG + chr2_1:75076692-75076711 Msa0225050:three_prime_UTR 40.0%
GTGAAAGATCGCAACCATGA+TGG + chr2_1:75074011-75074030 Msa0225050:five_prime_UTR 45.0%
TACAGGCTCCGTAAATCACA+AGG - chr2_1:75074241-75074260 None:intergenic 45.0%
ACCCATCCAGGTGTTAGAAT+TGG - chr2_1:75074402-75074421 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG - chr2_1:75074467-75074486 None:intergenic 45.0%
ACAAGACTTGCACCCACAAA+TGG + chr2_1:75074905-75074924 Msa0225050:CDS 45.0%
AAGGAGCCAATTGTTCCTTG+TGG + chr2_1:75075506-75075525 Msa0225050:CDS 45.0%
ATGAGGCCACAAGGAACAAT+TGG - chr2_1:75075515-75075534 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG + chr2_1:75076002-75076021 Msa0225050:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG + chr2_1:75076219-75076238 Msa0225050:CDS 45.0%
AGGATAGTCCACCAACAACA+AGG - chr2_1:75076233-75076252 None:intergenic 45.0%
! TGCTCTTTTTGCAGACCTCT+TGG + chr2_1:75076567-75076586 Msa0225050:intron 45.0%
! GCTCTTTTTGCAGACCTCTT+GGG + chr2_1:75076568-75076587 Msa0225050:intron 45.0%
! CTCTTTTTGCAGACCTCTTG+GGG + chr2_1:75076569-75076588 Msa0225050:intron 45.0%
GGGATCCATCCTACTTATCA+TGG + chr2_1:75076589-75076608 Msa0225050:CDS 45.0%
!!! GTTTTTTTTTTTTTTTTTTT+TGG - chr2_1:75074210-75074229 None:intergenic 5.0%
CACAGCAAGAACTACCTGCA+TGG + chr2_1:75074373-75074392 Msa0225050:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG - chr2_1:75074902-75074921 None:intergenic 50.0%
TTGTGGCGTAAGTCAGCTGA+AGG + chr2_1:75075443-75075462 Msa0225050:CDS 50.0%
TGTGGCGTAAGTCAGCTGAA+GGG + chr2_1:75075444-75075463 Msa0225050:CDS 50.0%
TTCCTTGTGGCCTCATTGCA+TGG + chr2_1:75075519-75075538 Msa0225050:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG + chr2_1:75075668-75075687 Msa0225050:CDS 50.0%
CGTACCTGTAAGTCCCTGTT+TGG + chr2_1:75075709-75075728 Msa0225050:intron 50.0%
AAGTAGGATGGATCCCCAAG+AGG - chr2_1:75076585-75076604 None:intergenic 50.0%
CTCCATGCAATGAGGCCACA+AGG - chr2_1:75075524-75075543 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75073819 75076790 75073819 ID=Msa0225050;Name=Msa0225050
chr2_1 mRNA 75073819 75076790 75073819 ID=Msa0225050-mRNA-1;Parent=Msa0225050;Name=Msa0225050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=233|1|1|1|1|1|8|152|338
chr2_1 exon 75073819 75074097 75073819 ID=Msa0225050-mRNA-1:exon:22353;Parent=Msa0225050-mRNA-1
chr2_1 exon 75074361 75074419 75074361 ID=Msa0225050-mRNA-1:exon:22354;Parent=Msa0225050-mRNA-1
chr2_1 exon 75074648 75074722 75074648 ID=Msa0225050-mRNA-1:exon:22355;Parent=Msa0225050-mRNA-1
chr2_1 exon 75074814 75074930 75074814 ID=Msa0225050-mRNA-1:exon:22356;Parent=Msa0225050-mRNA-1
chr2_1 exon 75075018 75075088 75075018 ID=Msa0225050-mRNA-1:exon:22357;Parent=Msa0225050-mRNA-1
chr2_1 exon 75075415 75075715 75075415 ID=Msa0225050-mRNA-1:exon:22358;Parent=Msa0225050-mRNA-1
chr2_1 exon 75076009 75076298 75076009 ID=Msa0225050-mRNA-1:exon:22359;Parent=Msa0225050-mRNA-1
chr2_1 exon 75076581 75076790 75076581 ID=Msa0225050-mRNA-1:exon:22360;Parent=Msa0225050-mRNA-1
chr2_1 five_prime_UTR 75073819 75074051 75073819 ID=Msa0225050-mRNA-1:five_prime_utr;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75074052 75074097 75074052 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75074361 75074419 75074361 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75074648 75074722 75074648 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75074814 75074930 75074814 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75075018 75075088 75075018 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75075415 75075715 75075415 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75076009 75076298 75076009 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 CDS 75076581 75076638 75076581 ID=Msa0225050-mRNA-1:cds;Parent=Msa0225050-mRNA-1
chr2_1 three_prime_UTR 75076639 75076790 75076639 ID=Msa0225050-mRNA-1:three_prime_utr;Parent=Msa0225050-mRNA-1
Gene Sequence

>Msa0225050

ATGGACAATCTCCTCCAATTCAAAGAAAACTTCAAGAAACCTAAATATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGCGTAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCGTACCTTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGACCTCTTGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>Msa0225050

MDNLLQFKENFKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESVPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK*