AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350350 MtrunA17_Chr6g0474081 95.868 242 10 0 1 242 1 242 2.63e-170 469
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350350 AT5G62140.1 59.242 211 78 3 37 239 27 237 3.00e-80 241

Find 63 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTTGATCTTGAGTTTA+AGG 0.089999 tig0011376:+3221 Msa1350350:intron
TGATGGAGTTTCAATTGTTT+TGG 0.254521 tig0011376:-1041 None:intergenic
AGCTCTACAACAAAGTTTCT+TGG 0.268474 tig0011376:+1259 Msa1350350:CDS
TAGATAAGAATATGCAAAAT+TGG 0.270341 tig0011376:+3747 Msa1350350:three_prime_UTR
TATTGAATGTACAACAATAT+TGG 0.271356 tig0011376:-3858 None:intergenic
TTCTGCTGGTAGTATATATA+AGG 0.293518 tig0011376:+3257 Msa1350350:CDS
ATCTCATGTCTGATTCCTTC+TGG 0.309124 tig0011376:+3563 Msa1350350:three_prime_UTR
CTTTAATGTTTCTAATACTT+TGG 0.327947 tig0011376:+3813 Msa1350350:three_prime_UTR
GGAGGAATAGGAACTGGTTT+TGG 0.356740 tig0011376:+1154 Msa1350350:CDS
GTGTATGCCTTATCATTTGA+TGG 0.365347 tig0011376:-1058 None:intergenic
CTCTTATGATGAAGAAGAAA+TGG 0.372803 tig0011376:-3481 None:intergenic
AGCTACAACAAAACCTTGTA+TGG 0.376682 tig0011376:-3607 None:intergenic
GGAAGTATCAATCAAGAATC+TGG 0.380544 tig0011376:+1334 Msa1350350:CDS
CTGCAAGTGGATGGTGGGAT+TGG 0.381928 tig0011376:+3641 Msa1350350:three_prime_UTR
CAATCCCACCATCCACTTGC+AGG 0.389550 tig0011376:-3640 None:intergenic
GCTTGGAATTTCAAGATATC+CGG 0.408249 tig0011376:+1111 Msa1350350:CDS
TTCCTAATGAATTCCTTCCT+TGG 0.410690 tig0011376:+3417 Msa1350350:CDS
TATGATGCTGAAGGAGGAAT+AGG 0.411780 tig0011376:+1142 Msa1350350:CDS
GACCAAGGAAGGAATTCATT+AGG 0.428876 tig0011376:-3419 None:intergenic
ATTGGTTCACTCGAATTAAT+CGG 0.429710 tig0011376:+3659 Msa1350350:three_prime_UTR
CACTCGAATTAATCGGTCCT+TGG 0.439080 tig0011376:+3666 Msa1350350:three_prime_UTR
ATATGAAATTTGCATTGTAT+TGG 0.443194 tig0011376:-938 None:intergenic
TGAAATTTGCATTGTATTGG+TGG 0.454546 tig0011376:-935 None:intergenic
TGATTTCTTGATGAAAGAAA+AGG 0.457970 tig0011376:-876 None:intergenic
GAGTGGAAGAGGCATGAGAT+TGG 0.458016 tig0011376:+3338 Msa1350350:CDS
GTTGTAGAGCTTGTTAATGA+TGG 0.460648 tig0011376:-1247 None:intergenic
TGAAACTCCATCAAATGATA+AGG 0.461780 tig0011376:+1051 Msa1350350:CDS
CCTTGTATGGACTTGCCCAC+TGG 0.474663 tig0011376:-3594 None:intergenic
TTCATTAGGAAATCATCAAT+AGG 0.476929 tig0011376:-3405 None:intergenic
TCAGCATCATATTCGAAATC+CGG 0.478437 tig0011376:-1130 None:intergenic
CCAGTGGGCAAGTCCATACA+AGG 0.478867 tig0011376:+3594 Msa1350350:three_prime_UTR
ATACTTCCTTGAAAAGCTTG+TGG 0.499885 tig0011376:-1319 None:intergenic
GAATTAATCGGTCCTTGGAT+CGG 0.513745 tig0011376:+3671 Msa1350350:three_prime_UTR
ACCAGCAGAAAACAAGAACT+TGG 0.514821 tig0011376:-3244 None:intergenic
GATTTAATTCTAAATGCAGT+AGG 0.516406 tig0011376:-3951 None:intergenic
GCTGAAGGAGGAATAGGAAC+TGG 0.519626 tig0011376:+1148 Msa1350350:CDS
CCTTCTGGTGTCAATTCCAG+TGG 0.524222 tig0011376:+3578 Msa1350350:three_prime_UTR
TTGACATCTGAAGAATCAAA+GGG 0.528888 tig0011376:+3306 Msa1350350:CDS
GGCATGAGATTGGATGAAGA+AGG 0.559408 tig0011376:+3348 Msa1350350:CDS
GGGGCTATGAAGAGTGGAAG+AGG 0.559986 tig0011376:+3327 Msa1350350:CDS
GTTGACATCTGAAGAATCAA+AGG 0.561822 tig0011376:+3305 Msa1350350:CDS
CTCAGTAGGTAGACCAAGGA+AGG 0.566579 tig0011376:-3430 None:intergenic
CTTTAAATGGGTCCTGCAAG+TGG 0.568863 tig0011376:+3628 Msa1350350:three_prime_UTR
AAAAGTCGGTATCCGATCCA+AGG 0.576342 tig0011376:-3683 None:intergenic
ATAAGAATATGCAAAATTGG+AGG 0.577452 tig0011376:+3750 Msa1350350:three_prime_UTR
AACACTGTCTTCACAAGTAG+TGG 0.578508 tig0011376:-3285 None:intergenic
TGGGTCCTGCAAGTGGATGG+TGG 0.599079 tig0011376:+3635 Msa1350350:three_prime_UTR
CCACTGGAATTGACACCAGA+AGG 0.599131 tig0011376:-3578 None:intergenic
GGGTCCTGCAAGTGGATGGT+GGG 0.599436 tig0011376:+3636 Msa1350350:three_prime_UTR
AGTTCAGCAAGACACTCAGT+AGG 0.604330 tig0011376:-3444 None:intergenic
TGAAGAAGGAAAGTGCAGAC+TGG 0.610863 tig0011376:+3362 Msa1350350:CDS
TTCGAATATGATGCTGAAGG+AGG 0.616202 tig0011376:+1136 Msa1350350:CDS
ATCAGACATGAGATCTTGCG+TGG 0.619576 tig0011376:-3554 None:intergenic
AAATGGGTCCTGCAAGTGGA+TGG 0.623567 tig0011376:+3632 Msa1350350:three_prime_UTR
GAAGGAAAGTGCAGACTGGT+TGG 0.627517 tig0011376:+3366 Msa1350350:CDS
CTTCTGGTGTCAATTCCAGT+GGG 0.631027 tig0011376:+3579 Msa1350350:three_prime_UTR
GACACTCAGTAGGTAGACCA+AGG 0.644039 tig0011376:-3434 None:intergenic
ACTGTCTTCACAAGTAGTGG+TGG 0.644274 tig0011376:-3282 None:intergenic
TATCAATCAAGAATCTGGCA+AGG 0.648241 tig0011376:+1339 Msa1350350:CDS
GATTTCGAATATGATGCTGA+AGG 0.659400 tig0011376:+1133 Msa1350350:CDS
AAAGTGCAGACTGGTTGGTG+TGG 0.674945 tig0011376:+3371 Msa1350350:CDS
GACATCTGAAGAATCAAAGG+GGG 0.690761 tig0011376:+3308 Msa1350350:CDS
TGACATCTGAAGAATCAAAG+GGG 0.738687 tig0011376:+3307 Msa1350350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATATATATTTTAT+CGG - tig0011376:2432-2451 None:intergenic 0.0%
!!! CAAATTAAATATTATGATTT+TGG - tig0011376:2266-2285 None:intergenic 10.0%
!!! TTTATATACTTCATTTTTTT+TGG + tig0011376:2344-2363 Msa1350350:intron 10.0%
!!! CTATTTTAATATTATATACT+AGG - tig0011376:2818-2837 None:intergenic 10.0%
!!! TTATTTTTTCAAAATTTTAC+TGG + tig0011376:3111-3130 Msa1350350:intron 10.0%
!!! ATTTTTATTTTTTTCTTACA+AGG + tig0011376:3203-3222 Msa1350350:intron 10.0%
!! AACAATTTCTATAACTTATA+TGG - tig0011376:1369-1388 None:intergenic 15.0%
!!! GCATTTTCTAAAATATTTAA+GGG - tig0011376:1466-1485 None:intergenic 15.0%
!!! AGCATTTTCTAAAATATTTA+AGG - tig0011376:1467-1486 None:intergenic 15.0%
!! CAAATATAGTAAGAATTTAT+TGG + tig0011376:1519-1538 Msa1350350:intron 15.0%
!!! TCAAACTTTTAATATATTGA+AGG + tig0011376:1912-1931 Msa1350350:intron 15.0%
!!! ACGCATATAAATTTTAATAT+GGG - tig0011376:2008-2027 None:intergenic 15.0%
!!! ATTAAATATTATGATTTTGG+TGG - tig0011376:2263-2282 None:intergenic 15.0%
!! ATATGAAATTTGCATTGTAT+TGG - tig0011376:941-960 None:intergenic 20.0%
!! ACAATATCAATCTTCAAAAA+TGG - tig0011376:1298-1317 None:intergenic 20.0%
!! GGTGGTTATTAAAAATATTT+GGG - tig0011376:1655-1674 None:intergenic 20.0%
!! TGGTGGTTATTAAAAATATT+TGG - tig0011376:1656-1675 None:intergenic 20.0%
!!! ACGCGAAATTTTTAAAATTT+AGG + tig0011376:1757-1776 Msa1350350:intron 20.0%
!!! TTAAAATTTAGGATACGATA+CGG + tig0011376:1768-1787 Msa1350350:intron 20.0%
!! ACAAGTTAAGAAACTAAAAA+TGG + tig0011376:1852-1871 Msa1350350:intron 20.0%
!!! CACGCATATAAATTTTAATA+TGG - tig0011376:2009-2028 None:intergenic 20.0%
!!! TCTATTTTCATTCATATGTT+AGG + tig0011376:2150-2169 Msa1350350:intron 20.0%
!!! CTATTTTCATTCATATGTTA+GGG + tig0011376:2151-2170 Msa1350350:intron 20.0%
!! TTCAATATAATCACATATGT+CGG - tig0011376:3086-3105 None:intergenic 20.0%
!! TAGATAAGAATATGCAAAAT+TGG + tig0011376:3747-3766 Msa1350350:three_prime_UTR 20.0%
!!! CTTTAATGTTTCTAATACTT+TGG + tig0011376:3813-3832 Msa1350350:three_prime_UTR 20.0%
!! TATTGAATGTACAACAATAT+TGG - tig0011376:3861-3880 None:intergenic 20.0%
!!! TTCTTTTGTGCATAATATTA+TGG + tig0011376:3913-3932 Msa1350350:three_prime_UTR 20.0%
! TGATTTCTTGATGAAAGAAA+AGG - tig0011376:879-898 None:intergenic 25.0%
!!! TTGTTTTGTTTTTCACTTGA+GGG - tig0011376:1013-1032 None:intergenic 25.0%
!!! TTTGTTTTGTTTTTCACTTG+AGG - tig0011376:1014-1033 None:intergenic 25.0%
! ATATCAATCTTCAAAAATGG+TGG - tig0011376:1295-1314 None:intergenic 25.0%
!! AAACACAAAGTGTTACTAAA+AGG - tig0011376:1422-1441 None:intergenic 25.0%
! AAATATTTAAGGGATGCATA+TGG - tig0011376:1456-1475 None:intergenic 25.0%
! ACTATATTTGTTTCCTTAAC+TGG - tig0011376:1509-1528 None:intergenic 25.0%
!! TTGTTTCTTTAATCAGTACT+CGG + tig0011376:1607-1626 Msa1350350:intron 25.0%
! AATGCAATCATATCTCAATT+TGG - tig0011376:1676-1695 None:intergenic 25.0%
! ATAATTAATTCCGATACTTC+TGG + tig0011376:2456-2475 Msa1350350:intron 25.0%
! TAATTAATTCCGATACTTCT+GGG + tig0011376:2457-2476 Msa1350350:intron 25.0%
! ACAAACTCTTATCATTAAAC+TGG - tig0011376:2642-2661 None:intergenic 25.0%
! TACCATTGATACCAAAAATT+TGG - tig0011376:2689-2708 None:intergenic 25.0%
! TTTGTTAACTAACTGACTAA+CGG + tig0011376:2874-2893 Msa1350350:intron 25.0%
! TCTTGAAGGAATAAACATTT+AGG + tig0011376:2951-2970 Msa1350350:intron 25.0%
! CTTGAAGGAATAAACATTTA+GGG + tig0011376:2952-2971 Msa1350350:intron 25.0%
! TTCATTAGGAAATCATCAAT+AGG - tig0011376:3408-3427 None:intergenic 25.0%
!!! GTTTTGTTGTAGCTTTAAAT+GGG + tig0011376:3616-3635 Msa1350350:three_prime_UTR 25.0%
! ATAAGAATATGCAAAATTGG+AGG + tig0011376:3750-3769 Msa1350350:three_prime_UTR 25.0%
! GATTTAATTCTAAATGCAGT+AGG - tig0011376:3954-3973 None:intergenic 25.0%
TGAAATTTGCATTGTATTGG+TGG - tig0011376:938-957 None:intergenic 30.0%
! TGATGGAGTTTCAATTGTTT+TGG - tig0011376:1044-1063 None:intergenic 30.0%
TGAAACTCCATCAAATGATA+AGG + tig0011376:1051-1070 Msa1350350:CDS 30.0%
GATACTTAAAAGATACTCGA+CGG - tig0011376:2410-2429 None:intergenic 30.0%
! AGAGAAAGAGTCCAAATTTT+TGG + tig0011376:2675-2694 Msa1350350:intron 30.0%
!!! GTCCAAATTTTTGGTATCAA+TGG + tig0011376:2684-2703 Msa1350350:intron 30.0%
TGATCCTGTAATATTAGAAG+AGG + tig0011376:2715-2734 Msa1350350:intron 30.0%
GATCCTGTAATATTAGAAGA+GGG + tig0011376:2716-2735 Msa1350350:intron 30.0%
AAACCATTAACTATGAAGCA+CGG - tig0011376:3179-3198 None:intergenic 30.0%
TTCTGCTGGTAGTATATATA+AGG + tig0011376:3257-3276 Msa1350350:CDS 30.0%
TTGACATCTGAAGAATCAAA+GGG + tig0011376:3306-3325 Msa1350350:CDS 30.0%
CTCTTATGATGAAGAAGAAA+TGG - tig0011376:3484-3503 None:intergenic 30.0%
!!! GGTTTTGTTGTAGCTTTAAA+TGG + tig0011376:3615-3634 Msa1350350:three_prime_UTR 30.0%
! ATTGGTTCACTCGAATTAAT+CGG + tig0011376:3659-3678 Msa1350350:three_prime_UTR 30.0%
GTGTATGCCTTATCATTTGA+TGG - tig0011376:1061-1080 None:intergenic 35.0%
GCTTGGAATTTCAAGATATC+CGG + tig0011376:1111-1130 Msa1350350:CDS 35.0%
TCAGCATCATATTCGAAATC+CGG - tig0011376:1133-1152 None:intergenic 35.0%
GATTTCGAATATGATGCTGA+AGG + tig0011376:1133-1152 Msa1350350:CDS 35.0%
!! GTTGTAGAGCTTGTTAATGA+TGG - tig0011376:1250-1269 None:intergenic 35.0%
AGCTCTACAACAAAGTTTCT+TGG + tig0011376:1259-1278 Msa1350350:CDS 35.0%
! ATTGTTCCACAAGCTTTTCA+AGG + tig0011376:1313-1332 Msa1350350:CDS 35.0%
ATACTTCCTTGAAAAGCTTG+TGG - tig0011376:1322-1341 None:intergenic 35.0%
!! GGAAGTATCAATCAAGAATC+TGG + tig0011376:1334-1353 Msa1350350:CDS 35.0%
TATCAATCAAGAATCTGGCA+AGG + tig0011376:1339-1358 Msa1350350:CDS 35.0%
AATGCTAACTAGTACTCTGA+AGG + tig0011376:1481-1500 Msa1350350:intron 35.0%
GCAATCATATCTCAATTTGG+TGG - tig0011376:1673-1692 None:intergenic 35.0%
!! TTTCTTAACTTGTGCCCTTA+GGG - tig0011376:1845-1864 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG - tig0011376:1985-2004 None:intergenic 35.0%
ACTCCCTCTTCTAATATTAC+AGG - tig0011376:2722-2741 None:intergenic 35.0%
AGTCTAAATCCTCGAGTTAT+TGG + tig0011376:2739-2758 Msa1350350:intron 35.0%
ATTTCACAACCAATAACTCG+AGG - tig0011376:2751-2770 None:intergenic 35.0%
TGACTAAACTAACGAACGAA+AGG + tig0011376:2910-2929 Msa1350350:intron 35.0%
TTTGAAGACTGAACTCTTGA+AGG + tig0011376:2937-2956 Msa1350350:intron 35.0%
GAGTCAAATCCAATTGTTAC+TGG + tig0011376:2994-3013 Msa1350350:intron 35.0%
CAACATAGTCCAGTAACAAT+TGG - tig0011376:3006-3025 None:intergenic 35.0%
! CTCTAATTGATAGTATGTCC+TGG + tig0011376:3035-3054 Msa1350350:intron 35.0%
! CAAGGTTGATCTTGAGTTTA+AGG + tig0011376:3221-3240 Msa1350350:intron 35.0%
GTTGACATCTGAAGAATCAA+AGG + tig0011376:3305-3324 Msa1350350:CDS 35.0%
TGACATCTGAAGAATCAAAG+GGG + tig0011376:3307-3326 Msa1350350:CDS 35.0%
TTCCTAATGAATTCCTTCCT+TGG + tig0011376:3417-3436 Msa1350350:CDS 35.0%
AGCTACAACAAAACCTTGTA+TGG - tig0011376:3610-3629 None:intergenic 35.0%
!! ACAAAAAGTGCTTGCAAGCT+TGG + tig0011376:1094-1113 Msa1350350:CDS 40.0%
TTCGAATATGATGCTGAAGG+AGG + tig0011376:1136-1155 Msa1350350:CDS 40.0%
TATGATGCTGAAGGAGGAAT+AGG + tig0011376:1142-1161 Msa1350350:CDS 40.0%
TTTAAGGGATGCATATGGCT+AGG - tig0011376:1451-1470 None:intergenic 40.0%
!! TACTCTGAAGGTACCAGTTA+AGG + tig0011376:1493-1512 Msa1350350:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + tig0011376:1827-1846 Msa1350350:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + tig0011376:1828-1847 Msa1350350:intron 40.0%
!! GTTTCTTAACTTGTGCCCTT+AGG - tig0011376:1846-1865 None:intergenic 40.0%
TTTCTAAACTTGTGCCCCAA+GGG + tig0011376:1967-1986 Msa1350350:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG - tig0011376:1984-2003 None:intergenic 40.0%
!! GAAATGTTAACTTGTGCCCT+TGG - tig0011376:1986-2005 None:intergenic 40.0%
TGGATGAAAGTAACGAGAGA+TGG - tig0011376:2243-2262 None:intergenic 40.0%
!! ATTCCGATACTTCTGGGATA+CGG + tig0011376:2463-2482 Msa1350350:intron 40.0%
! ATACCGTATCCCAGAAGTAT+CGG - tig0011376:2469-2488 None:intergenic 40.0%
TGTCCGTGCTTCATAGTTAA+TGG + tig0011376:3173-3192 Msa1350350:intron 40.0%
ACCAGCAGAAAACAAGAACT+TGG - tig0011376:3247-3266 None:intergenic 40.0%
AACACTGTCTTCACAAGTAG+TGG - tig0011376:3288-3307 None:intergenic 40.0%
GACATCTGAAGAATCAAAGG+GGG + tig0011376:3308-3327 Msa1350350:CDS 40.0%
GACCAAGGAAGGAATTCATT+AGG - tig0011376:3422-3441 None:intergenic 40.0%
ATCTCATGTCTGATTCCTTC+TGG + tig0011376:3563-3582 Msa1350350:three_prime_UTR 40.0%
GAATTAATCGGTCCTTGGAT+CGG + tig0011376:3671-3690 Msa1350350:three_prime_UTR 40.0%
!! GGAGGAATAGGAACTGGTTT+TGG + tig0011376:1154-1173 Msa1350350:CDS 45.0%
!!! AGGAACTGGTTTTGGTGCAA+AGG + tig0011376:1162-1181 Msa1350350:CDS 45.0%
TGCATTTAGCCTATGAAGCC+CGG + tig0011376:1690-1709 Msa1350350:intron 45.0%
GATACGGGTACGATACGATA+CGG + tig0011376:1724-1743 Msa1350350:intron 45.0%
ATACGGGTACGATACGATAC+GGG + tig0011376:1725-1744 Msa1350350:intron 45.0%
GTTTCTAAACTTGTGCCCCA+AGG + tig0011376:1966-1985 Msa1350350:intron 45.0%
!! TACTTCTGGGATACGGTATC+CGG + tig0011376:2470-2489 Msa1350350:intron 45.0%
TATCCGATACGTATCCGACA+CGG + tig0011376:2512-2531 Msa1350350:intron 45.0%
GAGCTAAATGCTATGAAGCC+CGG - tig0011376:2560-2579 None:intergenic 45.0%
!!! GCCAAGTTCTTGTTTTCTGC+TGG + tig0011376:3243-3262 Msa1350350:CDS 45.0%
ACTGTCTTCACAAGTAGTGG+TGG - tig0011376:3285-3304 None:intergenic 45.0%
GGCATGAGATTGGATGAAGA+AGG + tig0011376:3348-3367 Msa1350350:CDS 45.0%
! TGAAGAAGGAAAGTGCAGAC+TGG + tig0011376:3362-3381 Msa1350350:CDS 45.0%
AGTTCAGCAAGACACTCAGT+AGG - tig0011376:3447-3466 None:intergenic 45.0%
ATCAGACATGAGATCTTGCG+TGG - tig0011376:3557-3576 None:intergenic 45.0%
! CTTCTGGTGTCAATTCCAGT+GGG + tig0011376:3579-3598 Msa1350350:three_prime_UTR 45.0%
CTTTAAATGGGTCCTGCAAG+TGG + tig0011376:3628-3647 Msa1350350:three_prime_UTR 45.0%
CACTCGAATTAATCGGTCCT+TGG + tig0011376:3666-3685 Msa1350350:three_prime_UTR 45.0%
AAAAGTCGGTATCCGATCCA+AGG - tig0011376:3686-3705 None:intergenic 45.0%
!! AACAAAATATTTATATTAAA+AGG + tig0011376:1803-1822 Msa1350350:intron 5.0%
!! ACAAAATATTTATATTAAAA+GGG + tig0011376:1804-1823 Msa1350350:intron 5.0%
!!! TTTTTTTTTTTTTTAAAAGT+CGG - tig0011376:3700-3719 None:intergenic 5.0%
GCTGAAGGAGGAATAGGAAC+TGG + tig0011376:1148-1167 Msa1350350:CDS 50.0%
ACTACGTATCCGGGCTTCAT+AGG - tig0011376:1702-1721 None:intergenic 50.0%
TATCGGATACCGATACTCCG+CGG - tig0011376:2501-2520 None:intergenic 50.0%
ATCCGATACGTATCCGACAC+GGG + tig0011376:2513-2532 Msa1350350:intron 50.0%
TACCCGTGTCGGATACGTAT+CGG - tig0011376:2518-2537 None:intergenic 50.0%
ATACGTATCCGACACGGGTA+CGG + tig0011376:2518-2537 Msa1350350:intron 50.0%
!!! CGGCACCATTTTGGAGTATC+CGG + tig0011376:2538-2557 Msa1350350:intron 50.0%
!!! GGCACCATTTTGGAGTATCC+GGG + tig0011376:2539-2558 Msa1350350:intron 50.0%
GAAGCCCGGATACTCCAAAA+TGG - tig0011376:2546-2565 None:intergenic 50.0%
GTGTCTGACATGTGTCGTGT+TGG + tig0011376:3057-3076 Msa1350350:intron 50.0%
TCCGTATCAGTGTCGTGTTC+CGG + tig0011376:3144-3163 Msa1350350:intron 50.0%
ACCGGAACACGACACTGATA+CGG - tig0011376:3148-3167 None:intergenic 50.0%
TCAAAGGGGGCTATGAAGAG+TGG + tig0011376:3321-3340 Msa1350350:CDS 50.0%
! GAGTGGAAGAGGCATGAGAT+TGG + tig0011376:3338-3357 Msa1350350:CDS 50.0%
! GAAGGAAAGTGCAGACTGGT+TGG + tig0011376:3366-3385 Msa1350350:CDS 50.0%
! AAAGTGCAGACTGGTTGGTG+TGG + tig0011376:3371-3390 Msa1350350:CDS 50.0%
CTCAGTAGGTAGACCAAGGA+AGG - tig0011376:3433-3452 None:intergenic 50.0%
GACACTCAGTAGGTAGACCA+AGG - tig0011376:3437-3456 None:intergenic 50.0%
CCACTGGAATTGACACCAGA+AGG - tig0011376:3581-3600 None:intergenic 50.0%
! CCTTCTGGTGTCAATTCCAG+TGG + tig0011376:3578-3597 Msa1350350:three_prime_UTR 50.0%
AAATGGGTCCTGCAAGTGGA+TGG + tig0011376:3632-3651 Msa1350350:three_prime_UTR 50.0%
CCGTATCGCACTACGTATCC+GGG - tig0011376:1711-1730 None:intergenic 55.0%
CCCGGATACGTAGTGCGATA+CGG + tig0011376:1708-1727 Msa1350350:intron 55.0%
CCCGTATCGCACTACGTATC+CGG - tig0011376:1712-1731 None:intergenic 55.0%
CCGGATACGTAGTGCGATAC+GGG + tig0011376:1709-1728 Msa1350350:intron 55.0%
! TACGGTATCCGGAGTATCCG+CGG + tig0011376:2481-2500 Msa1350350:intron 55.0%
!! AAATGGTGCCGTACCCGTGT+CGG - tig0011376:2529-2548 None:intergenic 55.0%
! ACACGGGTACGGCACCATTT+TGG + tig0011376:2529-2548 Msa1350350:intron 55.0%
CACGACACATGTCAGACACC+AGG - tig0011376:3056-3075 None:intergenic 55.0%
TGAAGCACGGACACAGACAC+CGG - tig0011376:3166-3185 None:intergenic 55.0%
GGGGCTATGAAGAGTGGAAG+AGG + tig0011376:3327-3346 Msa1350350:CDS 55.0%
CCTTGTATGGACTTGCCCAC+TGG - tig0011376:3597-3616 None:intergenic 55.0%
CCAGTGGGCAAGTCCATACA+AGG + tig0011376:3594-3613 Msa1350350:three_prime_UTR 55.0%
CAATCCCACCATCCACTTGC+AGG - tig0011376:3643-3662 None:intergenic 55.0%
!! CTGCAAGTGGATGGTGGGAT+TGG + tig0011376:3641-3660 Msa1350350:three_prime_UTR 55.0%
CCGATACTCCGCGGATACTC+CGG - tig0011376:2492-2511 None:intergenic 60.0%
! CCGGAGTATCCGCGGAGTAT+CGG + tig0011376:2489-2508 Msa1350350:intron 60.0%
TGGGTCCTGCAAGTGGATGG+TGG + tig0011376:3635-3654 Msa1350350:three_prime_UTR 60.0%
GGGTCCTGCAAGTGGATGGT+GGG + tig0011376:3636-3655 Msa1350350:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0011376 gene 862 3993 862 ID=Msa1350350;Name=Msa1350350
tig0011376 mRNA 862 3993 862 ID=Msa1350350-mRNA-1;Parent=Msa1350350;Name=Msa1350350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|2|493|242
tig0011376 exon 862 1360 862 ID=Msa1350350-mRNA-1:exon:7352;Parent=Msa1350350-mRNA-1
tig0011376 exon 3225 3993 3225 ID=Msa1350350-mRNA-1:exon:7353;Parent=Msa1350350-mRNA-1
tig0011376 five_prime_UTR 862 907 862 ID=Msa1350350-mRNA-1:five_prime_utr;Parent=Msa1350350-mRNA-1
tig0011376 CDS 908 1360 908 ID=Msa1350350-mRNA-1:cds;Parent=Msa1350350-mRNA-1
tig0011376 CDS 3225 3500 3225 ID=Msa1350350-mRNA-1:cds;Parent=Msa1350350-mRNA-1
tig0011376 three_prime_UTR 3501 3993 3501 ID=Msa1350350-mRNA-1:three_prime_utr;Parent=Msa1350350-mRNA-1
Gene Sequence

>Msa1350350

ATGAGTTCTAAGATAAATTTCTCAAGTCCACCAATACAATGCAAATTTCATATCAAGAAATCAAATATCACAAGAAAAAACATCATCATCTTCTCTTCAATTCCCTCAAGTGAAAAACAAAACAAAACAATTTCCAAAACAATTGAAACTCCATCAAATGATAAGGCATACACTATTAATTTCAAGACAAAAAGTGCTTGCAAGCTTGGAATTTCAAGATATCCGGATTTCGAATATGATGCTGAAGGAGGAATAGGAACTGGTTTTGGTGCAAAGGAAACACAAAATTCAGATAACAATGACATTCTTGTTTCATTTGATCTTGATACATTGTATATTCCATCATTAACAAGCTCTACAACAAAGTTTCTTGGTTTGTCATTGCCACCATTTTTGAAGATTGATATTGTTCCACAAGCTTTTCAAGGAAGTATCAATCAAGAATCTGGCAAGGTTGATCTTGAGTTTAAGGCCAAGTTCTTGTTTTCTGCTGGTAGTATATATAAGGCTCCACCACTACTTGTGAAGACAGTGTTGACATCTGAAGAATCAAAGGGGGCTATGAAGAGTGGAAGAGGCATGAGATTGGATGAAGAAGGAAAGTGCAGACTGGTTGGTGTGGCAACAGTTGATCCTATTGATGATTTCCTAATGAATTCCTTCCTTGGTCTACCTACTGAGTGTCTTGCTGAACTAAATGCTGTAATCTCCATTTCTTCTTCATCATAA

Protein sequence

>Msa1350350

MSSKINFSSPPIQCKFHIKKSNITRKNIIIFSSIPSSEKQNKTISKTIETPSNDKAYTINFKTKSACKLGISRYPDFEYDAEGGIGTGFGAKETQNSDNNDILVSFDLDTLYIPSLTSSTTKFLGLSLPPFLKIDIVPQAFQGSINQESGKVDLEFKAKFLFSAGSIYKAPPLLVKTVLTSEESKGAMKSGRGMRLDEEGKCRLVGVATVDPIDDFLMNSFLGLPTECLAELNAVISISSSS*