AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0638550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638550 MtrunA17_Chr4g0049871 98.864 176 2 0 1 176 1 176 1.25e-131 365
Msa0638550 MtrunA17_Chr2g0279611 67.630 173 55 1 2 173 3 175 2.33e-86 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638550 AT2G14110.1 66.860 172 56 1 5 175 4 175 2.99e-86 251
Msa0638550 AT2G14110.2 68.421 133 42 0 5 137 4 136 5.15e-69 206

Find 59 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAACAGGTTTCAAATT+TGG 0.132575 4_3:-34049918 Msa0638550:intron
GGTAATAGTTTATGCCTTTA+TGG 0.172774 4_3:-34050823 None:intergenic
CAACCGTTCGCTTATATAAT+TGG 0.180368 4_3:-34050745 Msa0638550:five_prime_UTR
TTTGGGAGTTACAAGTATTT+TGG 0.197480 4_3:-34049900 Msa0638550:CDS
CAATAACAGGTTTCAAATTT+GGG 0.308384 4_3:-34049917 Msa0638550:intron
TTCGCTTATATAATTGGTTT+TGG 0.310728 4_3:-34050739 Msa0638550:five_prime_UTR
GTTAACAATGGCTTAAATCT+AGG 0.314102 4_3:-34049878 Msa0638550:CDS
CGATGGTCCTTATTATTTGT+TGG 0.332080 4_3:+34050710 None:intergenic
GTACATCCCAACAAATAATA+AGG 0.336358 4_3:-34050717 Msa0638550:five_prime_UTR
TCGATTTAGATTATACTCTT+TGG 0.338666 4_3:-34050578 Msa0638550:CDS
GATGGTCCTTATTATTTGTT+GGG 0.347588 4_3:+34050711 None:intergenic
CTTTCTCTCAAAGTGGATGA+TGG 0.395227 4_3:+34050685 None:intergenic
CAGAAAATTCATTCAAAGAC+CGG 0.400088 4_3:-34050102 Msa0638550:CDS
ACATTCAATTTAGTCCATAA+AGG 0.401753 4_3:+34050809 None:intergenic
CACCTCAATGTTTGTCGCCC+AGG 0.413707 4_3:-34050292 Msa0638550:intron
AATGTTATTAAAATTAAGTA+AGG 0.414294 4_3:+34049431 None:intergenic
GAAAGAAGAGATGGAGGAGG+TGG 0.415362 4_3:-34050667 Msa0638550:exon
CCAACCATGATGCTTGAGAT+TGG 0.417327 4_3:-34049757 Msa0638550:three_prime_UTR
ATACTCTTTGGCCTTTCTAC+TGG 0.426381 4_3:-34050566 Msa0638550:intron
AGAGATGGAGGAGGTGGAGA+AGG 0.429450 4_3:-34050661 Msa0638550:exon
GCTGAGGCAGTGCAAATGAT+AGG 0.438625 4_3:-34050633 Msa0638550:CDS
CCTCAAAGAACAAGCAGAAA+AGG 0.469406 4_3:-34049811 Msa0638550:CDS
TGATAACAATAACATGAAAC+CGG 0.472254 4_3:-34050046 Msa0638550:intron
GAGTGCACTCAAGATGCCTC+TGG 0.487612 4_3:+34050398 None:intergenic
ATCTCTTCTTTCTCTCAAAG+TGG 0.490555 4_3:+34050678 None:intergenic
CAAAGAAGGTGTGTCGTGCT+TGG 0.497441 4_3:+34050431 None:intergenic
TATGTGTGGAGTTGGTGATT+TGG 0.498178 4_3:+34050344 None:intergenic
AGAGAAAGAAGAGATGGAGG+AGG 0.524195 4_3:-34050670 Msa0638550:exon
CTCAAGATGCCTCTGGAATG+TGG 0.524198 4_3:+34050405 None:intergenic
TTGAGTGCACTCAAAGATGA+AGG 0.526991 4_3:-34050387 Msa0638550:CDS
AAATCGAACACTACGAGCCT+TGG 0.527042 4_3:+34050594 None:intergenic
AATCTAGGAGTATTTAGAGA+AGG 0.528974 4_3:-34049863 Msa0638550:CDS
GTACAAATTTACCAGTAGAA+AGG 0.530754 4_3:+34050555 None:intergenic
TGTGTCTATATTACTCTCCA+TGG 0.533355 4_3:-34049672 Msa0638550:three_prime_UTR
GGAGGAGGTGGAGAAGGTGA+AGG 0.537062 4_3:-34050655 Msa0638550:CDS
ATCTAGGAGTATTTAGAGAA+GGG 0.541922 4_3:-34049862 Msa0638550:CDS
TTGAGAGAAAGAAGAGATGG+AGG 0.549183 4_3:-34050673 Msa0638550:exon
GGTGGAGAAGGTGAAGGCTG+AGG 0.552861 4_3:-34050649 Msa0638550:CDS
ACTTTGAGAGAAAGAAGAGA+TGG 0.562452 4_3:-34050676 Msa0638550:exon
TAAGAAGACGAATGTGTGGA+GGG 0.566639 4_3:+34050768 None:intergenic
CTGGAATGTGGAAACAAAGA+AGG 0.568363 4_3:+34050417 None:intergenic
CCAATCTCAAGCATCATGGT+TGG 0.569748 4_3:+34049757 None:intergenic
GTTGTTGCTATGTGTGGAGT+TGG 0.571433 4_3:+34050336 None:intergenic
CATAGAGTTGTAGGGGACAC+CGG 0.577518 4_3:+34050083 None:intergenic
AAATACACAGAAAATTCACT+TGG 0.578953 4_3:+34049730 None:intergenic
ACATCCAATCTCAAGCATCA+TGG 0.585751 4_3:+34049753 None:intergenic
CAAAGTGGATGATGGATCGA+TGG 0.600898 4_3:+34050693 None:intergenic
AGTTGGTGATTTGGAAGCAA+TGG 0.603835 4_3:+34050353 None:intergenic
AAGTAAGGACTAAACTTACA+AGG 0.615053 4_3:+34049446 None:intergenic
AGATACGTTGTTGCTATGTG+TGG 0.622048 4_3:+34050330 None:intergenic
GTAAGAAGACGAATGTGTGG+AGG 0.628554 4_3:+34050767 None:intergenic
AACCTGGGCGACAAACATTG+AGG 0.630045 4_3:+34050290 None:intergenic
AAACCAATTATATAAGCGAA+CGG 0.630900 4_3:+34050742 None:intergenic
ACACAAGTTCTAAGATGATG+TGG 0.641264 4_3:-34049589 Msa0638550:three_prime_UTR
TCTTTGTTTCCACATTCCAG+AGG 0.646314 4_3:-34050414 Msa0638550:CDS
AAAAGAGCATAGAGTTGTAG+GGG 0.649290 4_3:+34050076 None:intergenic
AAGGTGTGTCGTGCTTGGAG+CGG 0.652306 4_3:+34050436 None:intergenic
GTTGTAAGAAGACGAATGTG+TGG 0.670683 4_3:+34050764 None:intergenic
GAATGTTTCAAGTACTACCA+AGG 0.677669 4_3:-34050611 Msa0638550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATGTATATTTATTTTA+CGG - chr4_3:34050009-34050028 Msa0638550:intron 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_3:34050050-34050069 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_3:34050051-34050070 None:intergenic 10.0%
!! AATGTTATTAAAATTAAGTA+AGG + chr4_3:34050792-34050811 None:intergenic 10.0%
!!! TTGTATGTATATTTATTTTA+CGG - chr4_3:34050009-34050028 Msa0638550:intron 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_3:34050050-34050069 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_3:34050051-34050070 None:intergenic 10.0%
!! AATGTTATTAAAATTAAGTA+AGG + chr4_3:34050792-34050811 None:intergenic 10.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_3:34050057-34050076 Msa0638550:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_3:34050196-34050215 None:intergenic 15.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_3:34050057-34050076 Msa0638550:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_3:34050196-34050215 None:intergenic 15.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_3:34050496-34050515 Msa0638550:intron 20.0%
!! AACTATATATTCCCTAAAAA+AGG - chr4_3:34050717-34050736 Msa0638550:five_prime_UTR 20.0%
!! ACTATATATTCCCTAAAAAA+GGG - chr4_3:34050718-34050737 Msa0638550:five_prime_UTR 20.0%
!!! ACATAATTAACCCTTTTTTA+GGG + chr4_3:34050731-34050750 None:intergenic 20.0%
!!! AACATAATTAACCCTTTTTT+AGG + chr4_3:34050732-34050751 None:intergenic 20.0%
!!! AAAAGGGTTAATTATGTTTT+TGG - chr4_3:34050734-34050753 Msa0638550:five_prime_UTR 20.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_3:34050496-34050515 Msa0638550:intron 20.0%
!! AACTATATATTCCCTAAAAA+AGG - chr4_3:34050717-34050736 Msa0638550:five_prime_UTR 20.0%
!! ACTATATATTCCCTAAAAAA+GGG - chr4_3:34050718-34050737 Msa0638550:five_prime_UTR 20.0%
!!! ACATAATTAACCCTTTTTTA+GGG + chr4_3:34050731-34050750 None:intergenic 20.0%
!!! AACATAATTAACCCTTTTTT+AGG + chr4_3:34050732-34050751 None:intergenic 20.0%
!!! AAAAGGGTTAATTATGTTTT+TGG - chr4_3:34050734-34050753 Msa0638550:five_prime_UTR 20.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_3:34049414-34049433 None:intergenic 25.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_3:34049481-34049500 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_3:34049481-34049500 Msa0638550:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_3:34049642-34049661 Msa0638550:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_3:34049698-34049717 Msa0638550:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_3:34049991-34050010 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_3:34050174-34050193 Msa0638550:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_3:34050233-34050252 Msa0638550:intron 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_3:34050236-34050255 Msa0638550:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_3:34050303-34050322 Msa0638550:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_3:34050330-34050349 Msa0638550:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_3:34050493-34050512 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_3:34050682-34050701 None:intergenic 25.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_3:34049414-34049433 None:intergenic 25.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_3:34049481-34049500 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_3:34049481-34049500 Msa0638550:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_3:34049642-34049661 Msa0638550:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_3:34049698-34049717 Msa0638550:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_3:34049991-34050010 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_3:34050174-34050193 Msa0638550:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_3:34050233-34050252 Msa0638550:intron 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_3:34050236-34050255 Msa0638550:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_3:34050303-34050322 Msa0638550:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_3:34050330-34050349 Msa0638550:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_3:34050493-34050512 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_3:34050682-34050701 None:intergenic 25.0%
GTACATCCCAACAAATAATA+AGG - chr4_3:34049503-34049522 Msa0638550:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_3:34049512-34049531 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_3:34049668-34049687 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_3:34050118-34050137 Msa0638550:CDS 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_3:34050148-34050167 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_3:34050305-34050324 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_3:34050302-34050321 Msa0638550:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_3:34050320-34050339 Msa0638550:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_3:34050342-34050361 Msa0638550:CDS 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_3:34050357-34050376 Msa0638550:CDS 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_3:34050358-34050377 Msa0638550:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_3:34050568-34050587 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_3:34050675-34050694 Msa0638550:exon 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_3:34050777-34050796 None:intergenic 30.0%
GTACATCCCAACAAATAATA+AGG - chr4_3:34049503-34049522 Msa0638550:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_3:34049512-34049531 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_3:34049668-34049687 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_3:34050118-34050137 Msa0638550:CDS 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_3:34050148-34050167 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_3:34050305-34050324 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_3:34050302-34050321 Msa0638550:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_3:34050320-34050339 Msa0638550:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_3:34050342-34050361 Msa0638550:CDS 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_3:34050357-34050376 Msa0638550:CDS 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_3:34050358-34050377 Msa0638550:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_3:34050568-34050587 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_3:34050675-34050694 Msa0638550:exon 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_3:34050777-34050796 None:intergenic 30.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_3:34049475-34049494 Msa0638550:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_3:34049513-34049532 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_3:34049545-34049564 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_3:34049544-34049563 Msa0638550:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_3:34049609-34049628 Msa0638550:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_3:34049712-34049731 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_3:34050147-34050166 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_3:34050149-34050168 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_3:34050290-34050309 Msa0638550:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_3:34050382-34050401 Msa0638550:CDS 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_3:34050383-34050402 Msa0638550:CDS 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_3:34050548-34050567 Msa0638550:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_3:34050631-34050650 Msa0638550:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_3:34050761-34050780 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_3:34050762-34050781 None:intergenic 35.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_3:34049475-34049494 Msa0638550:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_3:34049513-34049532 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_3:34049545-34049564 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_3:34049544-34049563 Msa0638550:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_3:34049609-34049628 Msa0638550:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_3:34049712-34049731 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_3:34050147-34050166 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_3:34050149-34050168 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_3:34050290-34050309 Msa0638550:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_3:34050382-34050401 Msa0638550:CDS 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_3:34050383-34050402 Msa0638550:CDS 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_3:34050548-34050567 Msa0638550:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_3:34050631-34050650 Msa0638550:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_3:34050761-34050780 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_3:34050762-34050781 None:intergenic 35.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_3:34049455-34049474 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_3:34049459-34049478 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_3:34049538-34049557 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_3:34049547-34049566 Msa0638550:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_3:34049654-34049673 Msa0638550:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_3:34049806-34049825 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_3:34049806-34049825 Msa0638550:CDS 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_3:34049833-34049852 Msa0638550:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_3:34049870-34049889 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_3:34049879-34049898 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_3:34049893-34049912 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_3:34049948-34049967 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_3:34050412-34050431 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_3:34050409-34050428 Msa0638550:CDS 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_3:34050470-34050489 None:intergenic 40.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_3:34049455-34049474 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_3:34049459-34049478 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_3:34049538-34049557 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_3:34049547-34049566 Msa0638550:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_3:34049654-34049673 Msa0638550:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_3:34049806-34049825 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_3:34049806-34049825 Msa0638550:CDS 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_3:34049833-34049852 Msa0638550:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_3:34049870-34049889 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_3:34049879-34049898 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_3:34049893-34049912 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_3:34049948-34049967 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_3:34050412-34050431 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_3:34050409-34050428 Msa0638550:CDS 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_3:34050470-34050489 None:intergenic 40.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_3:34049456-34049475 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_3:34049530-34049549 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_3:34049550-34049569 Msa0638550:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_3:34049629-34049648 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_3:34049887-34049906 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_3:34049949-34049968 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_3:34049947-34049966 Msa0638550:intron 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_3:34049964-34049983 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_3:34050466-34050485 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_3:34050463-34050482 Msa0638550:intron 45.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_3:34049456-34049475 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_3:34049530-34049549 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_3:34049550-34049569 Msa0638550:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_3:34049629-34049648 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_3:34049887-34049906 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_3:34049949-34049968 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_3:34049947-34049966 Msa0638550:intron 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_3:34049964-34049983 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_3:34050466-34050485 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_3:34050463-34050482 Msa0638550:intron 45.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_3:34049553-34049572 Msa0638550:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_3:34049587-34049606 Msa0638550:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_3:34049792-34049811 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_3:34049818-34049837 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_3:34049933-34049952 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_3:34050140-34050159 None:intergenic 50.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_3:34049553-34049572 Msa0638550:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_3:34049587-34049606 Msa0638550:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_3:34049792-34049811 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_3:34049818-34049837 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_3:34049933-34049952 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_3:34050140-34050159 None:intergenic 50.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_3:34049559-34049578 Msa0638550:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_3:34049787-34049806 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_3:34049825-34049844 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_3:34049928-34049947 Msa0638550:intron 55.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_3:34049559-34049578 Msa0638550:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_3:34049787-34049806 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_3:34049825-34049844 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_3:34049928-34049947 Msa0638550:intron 55.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_3:34049565-34049584 Msa0638550:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_3:34049571-34049590 Msa0638550:three_prime_UTR 60.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_3:34049565-34049584 Msa0638550:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_3:34049571-34049590 Msa0638550:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 34049411 34050831 34049411 ID=Msa0638550;Name=Msa0638550
chr4_3 mRNA 34049411 34050831 34049411 ID=Msa0638550-mRNA-1;Parent=Msa0638550;Name=Msa0638550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=152|1|1|1|1|1|4|391|176
chr4_3 exon 34049411 34049930 34049411 ID=Msa0638550-mRNA-1:exon:7758;Parent=Msa0638550-mRNA-1
chr4_3 exon 34050047 34050163 34050047 ID=Msa0638550-mRNA-1:exon:7757;Parent=Msa0638550-mRNA-1
chr4_3 exon 34050293 34050464 34050293 ID=Msa0638550-mRNA-1:exon:7756;Parent=Msa0638550-mRNA-1
chr4_3 exon 34050567 34050831 34050567 ID=Msa0638550-mRNA-1:exon:7755;Parent=Msa0638550-mRNA-1
chr4_3 five_prime_UTR 34050680 34050831 34050680 ID=Msa0638550-mRNA-1:five_prime_utr;Parent=Msa0638550-mRNA-1
chr4_3 CDS 34050567 34050679 34050567 ID=Msa0638550-mRNA-1:cds;Parent=Msa0638550-mRNA-1
chr4_3 CDS 34050293 34050464 34050293 ID=Msa0638550-mRNA-1:cds;Parent=Msa0638550-mRNA-1
chr4_3 CDS 34050047 34050163 34050047 ID=Msa0638550-mRNA-1:cds;Parent=Msa0638550-mRNA-1
chr4_3 CDS 34049802 34049930 34049802 ID=Msa0638550-mRNA-1:cds;Parent=Msa0638550-mRNA-1
chr4_3 three_prime_UTR 34049411 34049801 34049411 ID=Msa0638550-mRNA-1:three_prime_utr;Parent=Msa0638550-mRNA-1
Gene Sequence

>Msa0638550

ATGGAGGAGGTGGAGAAGGTGAAGGCTGAGGCAGTGCAAATGATAGGAATGTTTCAAGTACTACCAAGGCTCGTAGTGTTCGATTTAGATTATACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCCAAGCACGACACACCTTCTTTGTTTCCACATTCCAGAGGCATCTTGAGTGCACTCAAAGATGAAGGAATTGATGCTGCCATTGCTTCCAAATCACCAACTCCACACATAGCAACAACGTATCTTGACAAACTCAAAATCACCTCAATGTTTGTCGCCCAGGAAATATTTTACAGCTCGACACACAAAACAGAACATTTTCAGAAAATTCATTCAAAGACCGGTGTCCCCTACAACTCTATGCTCTTTTTCGACGATGATAACAATAACATGAAACCGGTTTCAAATTTGGGAGTTACAAGTATTTTGGTTAACAATGGCTTAAATCTAGGAGTATTTAGAGAAGGGCTCACAAGATTTTCGCAAAACTGGGATGCCTCAAAGAACAAGCAGAAAAGGCGCAAGTAA

Protein sequence

>Msa0638550

MEEVEKVKAEAVQMIGMFQVLPRLVVFDLDYTLWPFYCECRSKHDTPSLFPHSRGILSALKDEGIDAAIASKSPTPHIATTYLDKLKITSMFVAQEIFYSSTHKTEHFQKIHSKTGVPYNSMLFFDDDNNNMKPVSNLGVTSILVNNGLNLGVFREGLTRFSQNWDASKNKQKRRK*