AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0697230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697230 MtrunA17_Chr4g0049871 88.068 176 2 1 1 157 1 176 2.42e-112 316
Msa0697230 MtrunA17_Chr2g0279611 60.694 173 48 2 2 154 3 175 4.69e-73 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697230 AT2G14110.1 59.884 172 49 2 5 156 4 175 1.05e-72 216
Msa0697230 AT2G14110.2 59.398 133 35 1 5 118 4 136 1.13e-55 172

Find 58 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAACAGGTTTCAAATT+TGG 0.132575 4_4:-67193993 Msa0697230:intron
GGTAATAGTTTATGCCTTTA+TGG 0.172774 4_4:-67194898 None:intergenic
CAACCGTTTCCTTATATAAT+TGG 0.180368 4_4:-67194820 Msa0697230:five_prime_UTR
TTTGGGAGTTACAAGTATTT+TGG 0.197480 4_4:-67193975 Msa0697230:CDS
CAATAACAGGTTTCAAATTT+GGG 0.308384 4_4:-67193992 Msa0697230:intron
GTTAACAATGGCTTAAATCT+AGG 0.314102 4_4:-67193953 Msa0697230:CDS
TTTCCTTATATAATTGGTTT+TGG 0.324262 4_4:-67194814 Msa0697230:five_prime_UTR
CGATGGTCCTTATTATTTGT+TGG 0.332080 4_4:+67194785 None:intergenic
GTACATCCCAACAAATAATA+AGG 0.336358 4_4:-67194792 Msa0697230:five_prime_UTR
TCGATTTAGATTATACTCTT+TGG 0.338666 4_4:-67194653 Msa0697230:CDS
GATGGTCCTTATTATTTGTT+GGG 0.347588 4_4:+67194786 None:intergenic
GTACCAAAACCAATTATATA+AGG 0.351834 4_4:+67194811 None:intergenic
CTTTCTCTCAAAGTGGATGA+TGG 0.395227 4_4:+67194760 None:intergenic
CAGAAAATTCATTCAAAGAC+CGG 0.400088 4_4:-67194177 Msa0697230:CDS
ACATTCAATTTAGTCCATAA+AGG 0.401753 4_4:+67194884 None:intergenic
GAAAGAAGAGATGGAGGAGG+TGG 0.415362 4_4:-67194742 Msa0697230:exon
CCAACCATGATGCTTGAGAT+TGG 0.417327 4_4:-67193832 Msa0697230:three_prime_UTR
ATACTCTTTGGCCTTTCTAC+TGG 0.426381 4_4:-67194641 Msa0697230:intron
AGAGATGGAGGAGGTGGAGA+AGG 0.429450 4_4:-67194736 Msa0697230:exon
GCTGAGGCAGTGCAAATGAT+AGG 0.438625 4_4:-67194708 Msa0697230:CDS
CCTCAAAGAACAAGCAGAAA+AGG 0.469406 4_4:-67193886 Msa0697230:CDS
TGATAACAATAACATGAAAC+CGG 0.472254 4_4:-67194121 Msa0697230:intron
AATGCTATTAAAATTAAGTA+AGG 0.482276 4_4:+67193392 None:intergenic
GAGTGCACTCAAGATGCCTC+TGG 0.487612 4_4:+67194473 None:intergenic
ATCTCTTCTTTCTCTCAAAG+TGG 0.490555 4_4:+67194753 None:intergenic
CAAAGAAGGTGTGTCGTGCT+TGG 0.497441 4_4:+67194506 None:intergenic
TATGTGTGGAGTTGGTGATT+TGG 0.498178 4_4:+67194419 None:intergenic
AGAGAAAGAAGAGATGGAGG+AGG 0.524195 4_4:-67194745 Msa0697230:exon
CTCAAGATGCCTCTGGAATG+TGG 0.524198 4_4:+67194480 None:intergenic
TTGAGTGCACTCAAAGATGA+AGG 0.526991 4_4:-67194462 Msa0697230:CDS
AAATCGAACACTACGAGCCT+TGG 0.527042 4_4:+67194669 None:intergenic
AATCTAGGAGTATTTAGAGA+AGG 0.528974 4_4:-67193938 Msa0697230:CDS
GTACAAATTTACCAGTAGAA+AGG 0.530754 4_4:+67194630 None:intergenic
TGTGTCTATATTACTCTCCA+TGG 0.533355 4_4:-67193747 Msa0697230:three_prime_UTR
GGAGGAGGTGGAGAAGGTGA+AGG 0.537062 4_4:-67194730 Msa0697230:CDS
AAACCAATTATATAAGGAAA+CGG 0.539746 4_4:+67194817 None:intergenic
ATCTAGGAGTATTTAGAGAA+GGG 0.541922 4_4:-67193937 Msa0697230:CDS
TTGAGAGAAAGAAGAGATGG+AGG 0.549183 4_4:-67194748 Msa0697230:exon
GGTGGAGAAGGTGAAGGCTG+AGG 0.552861 4_4:-67194724 Msa0697230:CDS
ACTTTGAGAGAAAGAAGAGA+TGG 0.562452 4_4:-67194751 Msa0697230:exon
CTGGAATGTGGAAACAAAGA+AGG 0.568363 4_4:+67194492 None:intergenic
CCAATCTCAAGCATCATGGT+TGG 0.569748 4_4:+67193832 None:intergenic
GTTGTTGCTATGTGTGGAGT+TGG 0.571433 4_4:+67194411 None:intergenic
CATAGAGTTGTAGGGGACAC+CGG 0.577518 4_4:+67194158 None:intergenic
AAATACACAGAAAATTCACT+TGG 0.578953 4_4:+67193805 None:intergenic
ACATCCAATCTCAAGCATCA+TGG 0.585751 4_4:+67193828 None:intergenic
CAAAGTGGATGATGGATCGA+TGG 0.600898 4_4:+67194768 None:intergenic
AGTTGGTGATTTGGAAGCAA+TGG 0.603835 4_4:+67194428 None:intergenic
AAGTAAGGACTAAACTTACA+AGG 0.615053 4_4:+67193407 None:intergenic
AGATACGTTGTTGCTATGTG+TGG 0.622048 4_4:+67194405 None:intergenic
TAAGAAGATGAATGTGTGGA+GGG 0.622379 4_4:+67194843 None:intergenic
GTAAGAAGATGAATGTGTGG+AGG 0.632483 4_4:+67194842 None:intergenic
ACACAAGTTCTAAGATGATG+TGG 0.641264 4_4:-67193664 Msa0697230:three_prime_UTR
TCTTTGTTTCCACATTCCAG+AGG 0.646314 4_4:-67194489 Msa0697230:CDS
AAAAGAGCATAGAGTTGTAG+GGG 0.649290 4_4:+67194151 None:intergenic
AAGGTGTGTCGTGCTTGGAG+CGG 0.652306 4_4:+67194511 None:intergenic
GAATGTTTCAAGTACTACCA+AGG 0.677669 4_4:-67194686 Msa0697230:CDS
GTTGTAAGAAGATGAATGTG+TGG 0.692077 4_4:+67194839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATGTATATTTATTTTA+CGG - chr4_4:67193979-67193998 Msa0697230:CDS 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_4:67194020-67194039 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_4:67194021-67194040 None:intergenic 10.0%
!! TACTTAAACTTAATTAAATT+TGG - chr4_4:67194801-67194820 Msa0697230:five_prime_UTR 10.0%
!! ACTTAAACTTAATTAAATTT+GGG - chr4_4:67194802-67194821 Msa0697230:five_prime_UTR 10.0%
!!! TTGTATGTATATTTATTTTA+CGG - chr4_4:67193979-67193998 Msa0697230:CDS 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_4:67194020-67194039 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_4:67194021-67194040 None:intergenic 10.0%
!! TACTTAAACTTAATTAAATT+TGG - chr4_4:67194801-67194820 Msa0697230:five_prime_UTR 10.0%
!! ACTTAAACTTAATTAAATTT+GGG - chr4_4:67194802-67194821 Msa0697230:five_prime_UTR 10.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_4:67194027-67194046 Msa0697230:intron 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_4:67194166-67194185 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_4:67194876-67194895 None:intergenic 15.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_4:67194027-67194046 Msa0697230:intron 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_4:67194166-67194185 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_4:67194876-67194895 None:intergenic 15.0%
!! AAACCAATTATATAAGGAAA+CGG + chr4_4:67193451-67193470 None:intergenic 20.0%
!!! TTTCCTTATATAATTGGTTT+TGG - chr4_4:67193451-67193470 Msa0697230:intron 20.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_4:67194466-67194485 Msa0697230:CDS 20.0%
!!! GAAATGACATTGTTTTTTTA+GGG + chr4_4:67194701-67194720 None:intergenic 20.0%
!!! AGAAATGACATTGTTTTTTT+AGG + chr4_4:67194702-67194721 None:intergenic 20.0%
!!! AAAAAAACAATGTCATTTCT+AGG - chr4_4:67194702-67194721 Msa0697230:CDS 20.0%
!! AAACCAATTATATAAGGAAA+CGG + chr4_4:67193451-67193470 None:intergenic 20.0%
!!! TTTCCTTATATAATTGGTTT+TGG - chr4_4:67193451-67193470 Msa0697230:intron 20.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_4:67194466-67194485 Msa0697230:CDS 20.0%
!!! GAAATGACATTGTTTTTTTA+GGG + chr4_4:67194701-67194720 None:intergenic 20.0%
!!! AGAAATGACATTGTTTTTTT+AGG + chr4_4:67194702-67194721 None:intergenic 20.0%
!!! AAAAAAACAATGTCATTTCT+AGG - chr4_4:67194702-67194721 Msa0697230:CDS 20.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_4:67193384-67193403 None:intergenic 25.0%
! GTACCAAAACCAATTATATA+AGG + chr4_4:67193457-67193476 None:intergenic 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_4:67193612-67193631 Msa0697230:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_4:67193668-67193687 Msa0697230:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_4:67193961-67193980 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_4:67194144-67194163 Msa0697230:CDS 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_4:67194203-67194222 Msa0697230:CDS 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_4:67194206-67194225 Msa0697230:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_4:67194273-67194292 Msa0697230:intron 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_4:67194300-67194319 Msa0697230:intron 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_4:67194463-67194482 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_4:67194652-67194671 None:intergenic 25.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_4:67193384-67193403 None:intergenic 25.0%
! GTACCAAAACCAATTATATA+AGG + chr4_4:67193457-67193476 None:intergenic 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_4:67193612-67193631 Msa0697230:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_4:67193668-67193687 Msa0697230:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_4:67193961-67193980 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_4:67194144-67194163 Msa0697230:CDS 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_4:67194203-67194222 Msa0697230:CDS 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_4:67194206-67194225 Msa0697230:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_4:67194273-67194292 Msa0697230:intron 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_4:67194300-67194319 Msa0697230:intron 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_4:67194463-67194482 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_4:67194652-67194671 None:intergenic 25.0%
CAACCGTTTCCTTATATAAT+TGG - chr4_4:67193445-67193464 Msa0697230:three_prime_UTR 30.0%
GTACATCCCAACAAATAATA+AGG - chr4_4:67193473-67193492 Msa0697230:intron 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_4:67193482-67193501 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_4:67193638-67193657 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_4:67194088-67194107 Msa0697230:intron 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_4:67194118-67194137 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_4:67194275-67194294 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_4:67194272-67194291 Msa0697230:intron 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_4:67194290-67194309 Msa0697230:intron 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_4:67194312-67194331 Msa0697230:intron 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_4:67194327-67194346 Msa0697230:intron 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_4:67194328-67194347 Msa0697230:intron 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_4:67194538-67194557 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_4:67194645-67194664 Msa0697230:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4_4:67194845-67194864 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4_4:67194846-67194865 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_4:67194861-67194880 None:intergenic 30.0%
CAACCGTTTCCTTATATAAT+TGG - chr4_4:67193445-67193464 Msa0697230:three_prime_UTR 30.0%
GTACATCCCAACAAATAATA+AGG - chr4_4:67193473-67193492 Msa0697230:intron 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_4:67193482-67193501 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_4:67193638-67193657 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_4:67194088-67194107 Msa0697230:intron 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_4:67194118-67194137 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_4:67194275-67194294 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_4:67194272-67194291 Msa0697230:intron 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_4:67194290-67194309 Msa0697230:intron 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_4:67194312-67194331 Msa0697230:intron 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_4:67194327-67194346 Msa0697230:intron 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_4:67194328-67194347 Msa0697230:intron 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_4:67194538-67194557 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_4:67194645-67194664 Msa0697230:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4_4:67194845-67194864 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4_4:67194846-67194865 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_4:67194861-67194880 None:intergenic 30.0%
TAAGAAGATGAATGTGTGGA+GGG + chr4_4:67193425-67193444 None:intergenic 35.0%
GTTGTAAGAAGATGAATGTG+TGG + chr4_4:67193429-67193448 None:intergenic 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_4:67193483-67193502 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_4:67193515-67193534 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_4:67193514-67193533 Msa0697230:intron 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_4:67193579-67193598 Msa0697230:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_4:67193682-67193701 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_4:67194117-67194136 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_4:67194119-67194138 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_4:67194260-67194279 Msa0697230:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_4:67194352-67194371 Msa0697230:intron 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_4:67194353-67194372 Msa0697230:intron 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_4:67194518-67194537 Msa0697230:CDS 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_4:67194601-67194620 Msa0697230:intron 35.0%
! AAACAATGTCATTTCTAGGC+TGG - chr4_4:67194706-67194725 Msa0697230:CDS 35.0%
TAAGAAGATGAATGTGTGGA+GGG + chr4_4:67193425-67193444 None:intergenic 35.0%
GTTGTAAGAAGATGAATGTG+TGG + chr4_4:67193429-67193448 None:intergenic 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_4:67193483-67193502 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_4:67193515-67193534 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_4:67193514-67193533 Msa0697230:intron 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_4:67193579-67193598 Msa0697230:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_4:67193682-67193701 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_4:67194117-67194136 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_4:67194119-67194138 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_4:67194260-67194279 Msa0697230:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_4:67194352-67194371 Msa0697230:intron 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_4:67194353-67194372 Msa0697230:intron 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_4:67194518-67194537 Msa0697230:CDS 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_4:67194601-67194620 Msa0697230:intron 35.0%
! AAACAATGTCATTTCTAGGC+TGG - chr4_4:67194706-67194725 Msa0697230:CDS 35.0%
GTAAGAAGATGAATGTGTGG+AGG + chr4_4:67193426-67193445 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_4:67193508-67193527 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_4:67193517-67193536 Msa0697230:intron 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_4:67193624-67193643 Msa0697230:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_4:67193776-67193795 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_4:67193776-67193795 Msa0697230:three_prime_UTR 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_4:67193803-67193822 Msa0697230:three_prime_UTR 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_4:67193840-67193859 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_4:67193849-67193868 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_4:67193863-67193882 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_4:67193918-67193937 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_4:67194382-67194401 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_4:67194379-67194398 Msa0697230:intron 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_4:67194440-67194459 None:intergenic 40.0%
GTAAGAAGATGAATGTGTGG+AGG + chr4_4:67193426-67193445 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_4:67193508-67193527 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_4:67193517-67193536 Msa0697230:intron 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_4:67193624-67193643 Msa0697230:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_4:67193776-67193795 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_4:67193776-67193795 Msa0697230:three_prime_UTR 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_4:67193803-67193822 Msa0697230:three_prime_UTR 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_4:67193840-67193859 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_4:67193849-67193868 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_4:67193863-67193882 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_4:67193918-67193937 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_4:67194382-67194401 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_4:67194379-67194398 Msa0697230:intron 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_4:67194440-67194459 None:intergenic 40.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_4:67193500-67193519 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_4:67193520-67193539 Msa0697230:intron 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_4:67193599-67193618 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_4:67193857-67193876 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_4:67193919-67193938 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_4:67193917-67193936 Msa0697230:CDS 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_4:67193934-67193953 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_4:67194436-67194455 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_4:67194433-67194452 Msa0697230:CDS 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_4:67193500-67193519 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_4:67193520-67193539 Msa0697230:intron 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_4:67193599-67193618 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_4:67193857-67193876 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_4:67193919-67193938 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_4:67193917-67193936 Msa0697230:CDS 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_4:67193934-67193953 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_4:67194436-67194455 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_4:67194433-67194452 Msa0697230:CDS 45.0%
!!! TTTTTTTTTTTTTTTACAAA+AGG + chr4_4:67194770-67194789 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTACAAA+AGG + chr4_4:67194770-67194789 None:intergenic 5.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_4:67193523-67193542 Msa0697230:intron 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_4:67193557-67193576 Msa0697230:intron 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_4:67193762-67193781 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_4:67193788-67193807 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_4:67193903-67193922 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_4:67194110-67194129 None:intergenic 50.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_4:67193523-67193542 Msa0697230:intron 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_4:67193557-67193576 Msa0697230:intron 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_4:67193762-67193781 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_4:67193788-67193807 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_4:67193903-67193922 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_4:67194110-67194129 None:intergenic 50.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_4:67193529-67193548 Msa0697230:intron 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_4:67193757-67193776 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_4:67193795-67193814 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_4:67193898-67193917 Msa0697230:CDS 55.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_4:67193529-67193548 Msa0697230:intron 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_4:67193757-67193776 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_4:67193795-67193814 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_4:67193898-67193917 Msa0697230:CDS 55.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_4:67193535-67193554 Msa0697230:intron 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_4:67193541-67193560 Msa0697230:intron 60.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_4:67193535-67193554 Msa0697230:intron 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_4:67193541-67193560 Msa0697230:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 67193381 67194906 67193381 ID=Msa0697230;Name=Msa0697230
chr4_4 mRNA 67193381 67194906 67193381 ID=Msa0697230-mRNA-1;Parent=Msa0697230;Name=Msa0697230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=152|0.75|0.6|1|0.75|0.6|5|382|157
chr4_4 exon 67193381 67193464 67193381 ID=Msa0697230-mRNA-1:exon:19761;Parent=Msa0697230-mRNA-1
chr4_4 exon 67193579 67194005 67193579 ID=Msa0697230-mRNA-1:exon:19760;Parent=Msa0697230-mRNA-1
chr4_4 exon 67194122 67194224 67194122 ID=Msa0697230-mRNA-1:exon:19759;Parent=Msa0697230-mRNA-1
chr4_4 exon 67194411 67194539 67194411 ID=Msa0697230-mRNA-1:exon:19758;Parent=Msa0697230-mRNA-1
chr4_4 exon 67194642 67194906 67194642 ID=Msa0697230-mRNA-1:exon:19757;Parent=Msa0697230-mRNA-1
chr4_4 five_prime_UTR 67194755 67194906 67194755 ID=Msa0697230-mRNA-1:five_prime_utr;Parent=Msa0697230-mRNA-1
chr4_4 CDS 67194642 67194754 67194642 ID=Msa0697230-mRNA-1:cds;Parent=Msa0697230-mRNA-1
chr4_4 CDS 67194411 67194539 67194411 ID=Msa0697230-mRNA-1:cds;Parent=Msa0697230-mRNA-1
chr4_4 CDS 67194122 67194224 67194122 ID=Msa0697230-mRNA-1:cds;Parent=Msa0697230-mRNA-1
chr4_4 CDS 67193877 67194005 67193877 ID=Msa0697230-mRNA-1:cds;Parent=Msa0697230-mRNA-1
chr4_4 three_prime_UTR 67193579 67193876 67193579 ID=Msa0697230-mRNA-1:three_prime_utr;Parent=Msa0697230-mRNA-1
chr4_4 three_prime_UTR 67193381 67193464 67193381 ID=Msa0697230-mRNA-1:three_prime_utr;Parent=Msa0697230-mRNA-1
Gene Sequence

>Msa0697230

ATGGAGGAGGTGGAGAAGGTGAAGGCTGAGGCAGTGCAAATGATAGGAATGTTTCAAGTACTACCAAGGCTCGTAGTGTTCGATTTAGATTATACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCCAAGCACGACACACCTTCTTTGTTTCCACATTCCAGAGGCATCTTGAGTGCACTCAAAGATGAAGGAATTGATGCTGCCATTGCTTCCAAATCACCAACTCCACACATAGCAACAACCTCGACACACAAAACAGAACATTTTCAGAAAATTCATTCAAAGACCGGTGTCCCCTACAACTCTATGCTCTTTTTCGACGATGATAACAATAACATGAAACCGGTTTCAAATTTGGGAGTTACAAGTATTTTGGTTAACAATGGCTTAAATCTAGGAGTATTTAGAGAAGGGCTCACAAGATTTTCGCAAAACTGGGATGCCTCAAAGAACAAGCAGAAAAGGCGCAAGTAA

Protein sequence

>Msa0697230

MEEVEKVKAEAVQMIGMFQVLPRLVVFDLDYTLWPFYCECRSKHDTPSLFPHSRGILSALKDEGIDAAIASKSPTPHIATTSTHKTEHFQKIHSKTGVPYNSMLFFDDDNNNMKPVSNLGVTSILVNNGLNLGVFREGLTRFSQNWDASKNKQKRRK*