AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077340 MtrunA17_Chr7g0261511 89.151 212 2 1 1 191 1 212 3.32e-133 371
Msa1077340 MtrunA17_Chr1g0183621 72.642 212 37 1 1 191 5 216 1.13e-109 312
Msa1077340 MtrunA17_Chr2g0303251 70.093 214 39 2 1 189 1 214 2.74e-94 273
Msa1077340 MtrunA17_Chr2g0300321 40.826 218 98 3 3 189 4 221 2.90e-34 120
Msa1077340 MtrunA17_Chr8g0343561 43.182 176 79 1 3 157 4 179 1.84e-31 113
Msa1077340 MtrunA17_Chr4g0028231 30.108 186 99 3 1 160 5 185 1.94e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077340 AT1G03950.1 75.714 210 30 1 1 189 1 210 3.36e-110 313
Msa1077340 AT5G44560.1 65.455 220 45 2 1 189 1 220 7.62e-93 270
Msa1077340 AT5G44560.2 64.500 200 40 2 21 189 1 200 7.23e-82 241
Msa1077340 AT5G44560.4 67.416 178 37 1 1 157 1 178 2.98e-79 234
Msa1077340 AT5G44560.3 65.217 138 27 1 1 117 1 138 5.93e-56 174
Msa1077340 AT2G06530.1 43.182 220 93 5 2 189 4 223 2.95e-37 129
Msa1077340 AT2G06530.2 42.289 201 84 5 21 189 2 202 1.74e-30 110
Msa1077340 AT5G22950.1 29.130 230 118 5 1 190 5 229 1.85e-12 63.9

Find 71 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTGTGCCGATTGTTTC+TGG 0.092577 7_2:+75982384 None:intergenic
GAACTTAAAACCAGGATTTC+TGG 0.141192 7_2:-75980476 Msa1077340:three_prime_UTR
ATAACTACAGCCAAAATTTA+TGG 0.170867 7_2:+75980836 None:intergenic
ATAACTTTGGCTTGCTTTGC+TGG 0.189100 7_2:+75982416 None:intergenic
TCTAAGAAACCCATAAATTT+TGG 0.196836 7_2:-75980846 Msa1077340:exon
AACCAGGATTTCTGGTGTTT+TGG 0.273580 7_2:-75980468 Msa1077340:three_prime_UTR
CTTTGCTGCGATTCTCCCTT+TGG 0.289266 7_2:+75981172 None:intergenic
ATAGGTATTGAGAGGGAAAT+TGG 0.295401 7_2:-75983856 Msa1077340:intron
ACCTTTGGCGGTGGGTTTCT+TGG 0.303398 7_2:+75984099 None:intergenic
TGCTCTTACCTATTGATGTT+TGG 0.330713 7_2:-75980598 Msa1077340:three_prime_UTR
TAACTACAGCCAAAATTTAT+GGG 0.343069 7_2:+75980837 None:intergenic
GAACAGTTCACAAGAGTATA+TGG 0.344805 7_2:+75980377 None:intergenic
CACTCCTACCAAACATCAAT+AGG 0.367797 7_2:+75980590 None:intergenic
GGCAATGTCAGCTATGAATA+AGG 0.369472 7_2:-75983221 Msa1077340:intron
TTTGCTGCGATTCTCCCTTT+GGG 0.375553 7_2:+75981173 None:intergenic
TGTTTGGTAGGAGTGAAAAT+AGG 0.381327 7_2:-75980582 Msa1077340:three_prime_UTR
TCAATAGGTAAGAGCAGAAA+TGG 0.385517 7_2:+75980605 None:intergenic
CTGATAATACAAGGTTTAGA+TGG 0.396333 7_2:+75980347 None:intergenic
AACCTTGTATTATCAGTTGT+TGG 0.412355 7_2:-75980340 None:intergenic
AAATATATAGTCCACAACTA+TGG 0.413085 7_2:+75980660 None:intergenic
CTGGAATTCCTGCATAACTT+TGG 0.413362 7_2:+75982403 None:intergenic
GGAAATTGGATCATTACAAT+TGG 0.414552 7_2:-75983842 Msa1077340:CDS
TGCTAATCTTCAGGGTAGTC+GGG 0.416103 7_2:-75983461 Msa1077340:intron
TGATGACCTTGAGAAGCGTT+TGG 0.421971 7_2:-75980873 Msa1077340:CDS
GCACATTCTTCTGTTGCTGT+TGG 0.431120 7_2:-75983262 Msa1077340:CDS
CTTACCTATTGATGTTTGGT+AGG 0.431148 7_2:-75980594 Msa1077340:three_prime_UTR
TCTGTTGCTGTTGGCATGAA+AGG 0.439539 7_2:-75983253 Msa1077340:CDS
CGGAACTTTAAAAGATTCGT+TGG 0.444146 7_2:-75980426 Msa1077340:three_prime_UTR
TTGCTAATCTTCAGGGTAGT+CGG 0.468100 7_2:-75983462 Msa1077340:intron
TGACAGGTGCTTGATGAAAT+CGG 0.480841 7_2:-75981309 Msa1077340:intron
TACCAAAACACCAGAAATCC+TGG 0.482126 7_2:+75980466 None:intergenic
AAGTTCCGTGTGAGTTCTAG+TGG 0.485468 7_2:+75980441 None:intergenic
TGGCATGAAAGGCGCTACTA+AGG 0.493496 7_2:-75983242 Msa1077340:CDS
ACTTGGCACTCATTTACAAA+TGG 0.494947 7_2:+75980628 None:intergenic
CGGTGTCGATATTGCCTCAC+AGG 0.505099 7_2:-75981289 Msa1077340:intron
ATTAAGAGAACTGCTAAGAC+AGG 0.519875 7_2:-75983698 Msa1077340:CDS
AGAAGAAGAACCTTTGGCGG+TGG 0.535725 7_2:+75984090 None:intergenic
AAAGCAAGCCAAAGTTATGC+AGG 0.535984 7_2:-75982411 Msa1077340:CDS
TGACCTTGAGAAGCGTTTGG+CGG 0.541826 7_2:-75980870 Msa1077340:CDS
GAAGAAGAACCTTTGGCGGT+GGG 0.543040 7_2:+75984091 None:intergenic
ACCAAGAAACCCACCGCCAA+AGG 0.550200 7_2:-75984100 Msa1077340:intron
CCAGAAACAATCGGCACAGA+TGG 0.552247 7_2:-75982384 Msa1077340:CDS
GCAGGAATTCCAGAAACAAT+CGG 0.554202 7_2:-75982393 Msa1077340:CDS
GCAAAGAATACTGAAAATGT+TGG 0.554829 7_2:-75981155 Msa1077340:CDS
AGAATACTGAAAATGTTGGC+AGG 0.560171 7_2:-75981151 Msa1077340:intron
AGATGTCATAGATGATGCCT+TGG 0.571244 7_2:-75982246 Msa1077340:CDS
AGTTATCGTCAGCTCCCAAA+GGG 0.573333 7_2:-75981187 Msa1077340:CDS
CCATGATTGAACTTAAAACC+AGG 0.581112 7_2:-75980484 Msa1077340:three_prime_UTR
TTCAGCTTCATCATCATCCA+AGG 0.587316 7_2:+75982229 None:intergenic
TAGTAGATTGAACATAGTGC+AGG 0.588553 7_2:-75980545 Msa1077340:three_prime_UTR
GGTAAGAGCAGAAATGGACT+TGG 0.588901 7_2:+75980611 None:intergenic
AGAAGAAGAAGAACCTTTGG+CGG 0.589246 7_2:+75984087 None:intergenic
GAGCCGCCAAACGCTTCTCA+AGG 0.592287 7_2:+75980867 None:intergenic
CAGTTATCGTCAGCTCCCAA+AGG 0.599044 7_2:-75981188 Msa1077340:CDS
TCATATATATAGGTATTGAG+AGG 0.599716 7_2:-75983864 Msa1077340:intron
TAGGAGTGAAAATAGGCAAG+AGG 0.602779 7_2:-75980575 Msa1077340:three_prime_UTR
AGAGAATAGATTACCTCTAG+TGG 0.604125 7_2:+75983945 None:intergenic
GGATGATGATGAAGCTGAAG+AGG 0.605718 7_2:-75982225 Msa1077340:CDS
TACCAACAACTGATAATACA+AGG 0.608705 7_2:+75980338 None:intergenic
GGTAGTCGGGCTCAGATGAG+AGG 0.622685 7_2:-75983448 Msa1077340:CDS
GAAAATAGGCAAGAGGAGAA+CGG 0.628842 7_2:-75980568 Msa1077340:three_prime_UTR
CATATATATAGGTATTGAGA+GGG 0.628943 7_2:-75983863 Msa1077340:intron
AAAGTAGTAGGAAAGTAACA+AGG 0.639375 7_2:-75984193 Msa1077340:five_prime_UTR
CTGTAGTTGAGCCATAGTTG+TGG 0.641761 7_2:-75980671 Msa1077340:three_prime_UTR
TGCGCTATTGTCAACAACGA+AGG 0.650091 7_2:+75984137 None:intergenic
GTATTCCACTAGAACTCACA+CGG 0.655449 7_2:-75980446 Msa1077340:three_prime_UTR
TATATGGTTCACGATCTCAA+AGG 0.658434 7_2:-75980816 Msa1077340:three_prime_UTR
GAAATGACTAACGCCACTAG+AGG 0.662249 7_2:-75983958 Msa1077340:intron
AGGCATAGCAACTCACACGC+AGG 0.676531 7_2:-75983428 Msa1077340:intron
AACTGCTAAGACAGGAAACG+AGG 0.681032 7_2:-75983690 Msa1077340:intron
AAAGCTTATTCCTACCTGTG+AGG 0.707349 7_2:+75981275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTAATTAATAAAATT+AGG + chr7_2:75980733-75980752 None:intergenic 0.0%
!! AAAAAAATATTATAATAAAA+AGG + chr7_2:75982461-75982480 None:intergenic 0.0%
!! TTTAATACTATCATATATAT+AGG - chr7_2:75980748-75980767 Msa1077340:three_prime_UTR 10.0%
!! TAAAGTTAGTAATAATAATA+TGG - chr7_2:75980863-75980882 Msa1077340:CDS 10.0%
!!! ATTTATAAATTAGTTTAAGA+GGG + chr7_2:75983051-75983070 None:intergenic 10.0%
!!! TATTTATAAATTAGTTTAAG+AGG + chr7_2:75983052-75983071 None:intergenic 10.0%
!!! TATGATATATTAATTTTAAG+AGG - chr7_2:75983909-75983928 Msa1077340:intron 10.0%
!!! TAGCATTTGATTTTTATTTA+TGG - chr7_2:75981832-75981851 Msa1077340:intron 15.0%
!!! AAATTTGATGTTTTATTCTC+AGG - chr7_2:75981089-75981108 Msa1077340:intron 20.0%
!!! AATTTGATGTTTTATTCTCA+GGG - chr7_2:75981090-75981109 Msa1077340:intron 20.0%
!! AAAAACACAACAAAAACAAA+GGG + chr7_2:75981237-75981256 None:intergenic 20.0%
!! AAAAAACACAACAAAAACAA+AGG + chr7_2:75981238-75981257 None:intergenic 20.0%
!!! TGTCCATTTTCATAATATAA+AGG - chr7_2:75981458-75981477 Msa1077340:intron 20.0%
!!! GTCCATTTTCATAATATAAA+GGG - chr7_2:75981459-75981478 Msa1077340:intron 20.0%
!!! TGTCCATTTTCATAATATAA+AGG - chr7_2:75981458-75981477 Msa1077340:intron 20.0%
!!! GTCCATTTTCATAATATAAA+GGG - chr7_2:75981459-75981478 Msa1077340:intron 20.0%
!!! TGCAAATGAAAATTCTTTTT+TGG - chr7_2:75981755-75981774 Msa1077340:intron 20.0%
!!! AAATGAAAATTCTTTTTTGG+AGG - chr7_2:75981758-75981777 Msa1077340:intron 20.0%
!!! TATCAATGTTTTGTTTAACT+CGG + chr7_2:75982104-75982123 None:intergenic 20.0%
!! GTTAAACAAAACATTGATAT+TGG - chr7_2:75982105-75982124 Msa1077340:intron 20.0%
!!! TTTTCTAGAATTTTACAAGT+TGG - chr7_2:75982285-75982304 Msa1077340:intron 20.0%
!!! AAACAAAAGTATAGTTACAT+GGG - chr7_2:75982946-75982965 Msa1077340:intron 20.0%
!!! AACTTTCTTATTGTTTTTAG+AGG + chr7_2:75983523-75983542 None:intergenic 20.0%
!! ACAAGTTAAAATTTCTTAAG+CGG - chr7_2:75983672-75983691 Msa1077340:intron 20.0%
!!! TCATATATCATCATTTTTCA+AGG + chr7_2:75983894-75983913 None:intergenic 20.0%
!!! GATATATTAATTTTAAGAGG+TGG - chr7_2:75983912-75983931 Msa1077340:intron 20.0%
! AGAAAAAAAGAGAAAGTAGT+AGG - chr7_2:75980417-75980436 Msa1077340:three_prime_UTR 25.0%
!!! TCATATATATAGGTATTGAG+AGG - chr7_2:75980758-75980777 Msa1077340:three_prime_UTR 25.0%
!!! CATATATATAGGTATTGAGA+GGG - chr7_2:75980759-75980778 Msa1077340:three_prime_UTR 25.0%
!!! TATGGATTGTTTGTTTTGTT+AGG - chr7_2:75980881-75980900 Msa1077340:CDS 25.0%
!!! ATCTGCAAATTTTTAGTCAT+AGG - chr7_2:75980968-75980987 Msa1077340:intron 25.0%
! TTATCTACTGACATAAACAA+AGG + chr7_2:75981037-75981056 None:intergenic 25.0%
! TCAAATAAGTTAATTCGAAC+AGG - chr7_2:75981059-75981078 Msa1077340:intron 25.0%
!! TATGATATTTGACTTAGCTA+TGG - chr7_2:75981308-75981327 Msa1077340:intron 25.0%
! CACCCTTTATATTATGAAAA+TGG + chr7_2:75981464-75981483 None:intergenic 25.0%
!! CATTTTCATAATATAAAGGG+TGG - chr7_2:75981462-75981481 Msa1077340:intron 25.0%
! CACCCTTTATATTATGAAAA+TGG + chr7_2:75981464-75981483 None:intergenic 25.0%
!! CATTTTCATAATATAAAGGG+TGG - chr7_2:75981462-75981481 Msa1077340:intron 25.0%
! ATATTGTTCCAAAACTTGAT+TGG - chr7_2:75981689-75981708 Msa1077340:intron 25.0%
! TATTGTTCCAAAACTTGATT+GGG - chr7_2:75981690-75981709 Msa1077340:intron 25.0%
!! TGTAATAGCAACATTTTGTT+TGG - chr7_2:75981714-75981733 Msa1077340:intron 25.0%
!! TAGAGTTTTCATGAATTTTG+AGG - chr7_2:75981792-75981811 Msa1077340:intron 25.0%
!! TGTTCATTTGCTAAATATTG+TGG - chr7_2:75981941-75981960 Msa1077340:intron 25.0%
!! AAGGGACTTTAGAAATTAAA+AGG - chr7_2:75982028-75982047 Msa1077340:intron 25.0%
! AATGGTGTAGAAAATATTTG+TGG + chr7_2:75982134-75982153 None:intergenic 25.0%
! AATCATTGTTTACACTTCAA+TGG - chr7_2:75982320-75982339 Msa1077340:intron 25.0%
! TTAAAATGACCTGTAGTTTA+TGG - chr7_2:75982542-75982561 Msa1077340:intron 25.0%
! GTAAATAAACCAATCCAAAT+AGG + chr7_2:75982728-75982747 None:intergenic 25.0%
!! CATGTAACTATACTTTTGTT+TGG + chr7_2:75982947-75982966 None:intergenic 25.0%
!! CAAACAAAAGTATAGTTACA+TGG - chr7_2:75982945-75982964 Msa1077340:intron 25.0%
! TTTATTCACAAAGAGTAAGA+TGG - chr7_2:75983204-75983223 Msa1077340:intron 25.0%
! TTATTCACAAAGAGTAAGAT+GGG - chr7_2:75983205-75983224 Msa1077340:intron 25.0%
! GCTAATATCATCTTAATGTA+AGG + chr7_2:75983244-75983263 None:intergenic 25.0%
!!! CAAGCTAATTTGTATTCTTT+TGG - chr7_2:75983411-75983430 Msa1077340:intron 25.0%
!!! CTTATTGTTTTTAGAGGATA+GGG + chr7_2:75983517-75983536 None:intergenic 25.0%
!!! TCTTATTGTTTTTAGAGGAT+AGG + chr7_2:75983518-75983537 None:intergenic 25.0%
! CAATAAGAAAGTTAAGAGAA+AGG - chr7_2:75983530-75983549 Msa1077340:intron 25.0%
! GTAATAACATCAAAATTCCA+AGG + chr7_2:75983718-75983737 None:intergenic 25.0%
!!! ATTTTGATGTTATTACAGCT+CGG - chr7_2:75983722-75983741 Msa1077340:CDS 25.0%
!! TCTAAGAAACCCATAAATTT+TGG - chr7_2:75983776-75983795 Msa1077340:intron 25.0%
! TAACTACAGCCAAAATTTAT+GGG + chr7_2:75983788-75983807 None:intergenic 25.0%
! ATAACTACAGCCAAAATTTA+TGG + chr7_2:75983789-75983808 None:intergenic 25.0%
!!! AAATTTTGGCTGTAGTTATA+TGG - chr7_2:75983790-75983809 Msa1077340:intron 25.0%
! AAATATATAGTCCACAACTA+TGG + chr7_2:75983965-75983984 None:intergenic 25.0%
! AAAGTTTTACGAGTAGAACA+CGG - chr7_2:75980371-75980390 Msa1077340:three_prime_UTR 30.0%
!!! TTCTCTTTTTTTCTTCACGT+TGG + chr7_2:75980411-75980430 None:intergenic 30.0%
AAAGTAGTAGGAAAGTAACA+AGG - chr7_2:75980429-75980448 Msa1077340:three_prime_UTR 30.0%
!! TTTAATTGATTTTGCTGCAG+AGG - chr7_2:75980621-75980640 Msa1077340:three_prime_UTR 30.0%
GGAAATTGGATCATTACAAT+TGG - chr7_2:75980780-75980799 Msa1077340:three_prime_UTR 30.0%
ATTGTTCCAAAACTTGATTG+GGG - chr7_2:75981691-75981710 Msa1077340:intron 30.0%
TGGAGCAATGAACAATATTA+AGG - chr7_2:75981888-75981907 Msa1077340:intron 30.0%
GGAGCAATGAACAATATTAA+GGG - chr7_2:75981889-75981908 Msa1077340:intron 30.0%
AACAATATTAAGGGTTGCTA+TGG - chr7_2:75981898-75981917 Msa1077340:intron 30.0%
TTGAAGAACTGCTATTATCA+AGG + chr7_2:75982077-75982096 None:intergenic 30.0%
AACGGTAAAAGACTGAAAAA+TGG + chr7_2:75982152-75982171 None:intergenic 30.0%
! TTTACCGTTTCCTAATTTGT+TGG - chr7_2:75982163-75982182 Msa1077340:intron 30.0%
GAATCCAACAAATTAGGAAA+CGG + chr7_2:75982170-75982189 None:intergenic 30.0%
TGCAATGAATCCAACAAATT+AGG + chr7_2:75982176-75982195 None:intergenic 30.0%
AATTATGCTTCTCTGTTTAC+AGG - chr7_2:75982489-75982508 Msa1077340:intron 30.0%
! CCTATTTTGTATCCTAACTT+CGG - chr7_2:75982625-75982644 Msa1077340:intron 30.0%
TTTATTCTTGATTTCCCCAA+GGG + chr7_2:75982659-75982678 None:intergenic 30.0%
! TTTTATTCTTGATTTCCCCA+AGG + chr7_2:75982660-75982679 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr7_2:75982810-75982829 None:intergenic 30.0%
AAATTATCTCCACAAGATCA+TGG + chr7_2:75982989-75983008 None:intergenic 30.0%
TGATCTTGTGGAGATAATTT+AGG - chr7_2:75982989-75983008 Msa1077340:intron 30.0%
GATCTTGTGGAGATAATTTA+GGG - chr7_2:75982990-75983009 Msa1077340:intron 30.0%
ATCTTGTGGAGATAATTTAG+GGG - chr7_2:75982991-75983010 Msa1077340:intron 30.0%
CTAATAATCAGTGAAAGCTT+AGG - chr7_2:75983014-75983033 Msa1077340:intron 30.0%
! AATTAGTTTAAGAGGGTATG+CGG + chr7_2:75983044-75983063 None:intergenic 30.0%
TCACTTAGTTACAAGGTTTA+AGG - chr7_2:75983173-75983192 Msa1077340:intron 30.0%
TAGTTACAAGGTTTAAGGAA+TGG - chr7_2:75983178-75983197 Msa1077340:intron 30.0%
GCAAAGAATACTGAAAATGT+TGG - chr7_2:75983467-75983486 Msa1077340:intron 30.0%
!! TTTGCAAGTTTTAATGACCT+TGG - chr7_2:75983698-75983717 Msa1077340:CDS 30.0%
! TTTTGATGTTATTACAGCTC+GGG - chr7_2:75983723-75983742 Msa1077340:intron 30.0%
!!! TAAAAGATTCGTTGGTTTTG+TGG - chr7_2:75984204-75984223 Msa1077340:five_prime_UTR 30.0%
CTGATAATACAAGGTTTAGA+TGG + chr7_2:75984278-75984297 None:intergenic 30.0%
AGAAGAAGAAGAAGAACCTT+TGG + chr7_2:75980541-75980560 None:intergenic 35.0%
AGAGAATAGATTACCTCTAG+TGG + chr7_2:75980680-75980699 None:intergenic 35.0%
!! ATAGGTATTGAGAGGGAAAT+TGG - chr7_2:75980766-75980785 Msa1077340:three_prime_UTR 35.0%
ATTAAGAGAACTGCTAAGAC+AGG - chr7_2:75980924-75980943 Msa1077340:intron 35.0%
CAACAGATTGCTAATCTTCA+GGG - chr7_2:75981153-75981172 Msa1077340:CDS 35.0%
!! TTGTTGACTTGTGTTTGAGA+TGG - chr7_2:75981276-75981295 Msa1077340:intron 35.0%
! ATTACACCCCAATCAAGTTT+TGG + chr7_2:75981700-75981719 None:intergenic 35.0%
!!! CTTTTTTGGAGGTGATATAG+AGG - chr7_2:75981769-75981788 Msa1077340:intron 35.0%
CATGTTAGTCCATAAACTAC+AGG + chr7_2:75982554-75982573 None:intergenic 35.0%
CCGAAGTTAGGATACAAAAT+AGG + chr7_2:75982628-75982647 None:intergenic 35.0%
CTTAACTAACTTCACCTAGT+AGG + chr7_2:75982704-75982723 None:intergenic 35.0%
CTACTAGGTGAAGTTAGTTA+AGG - chr7_2:75982702-75982721 Msa1077340:intron 35.0%
GAAGTTAGTTAAGGCCTATT+TGG - chr7_2:75982711-75982730 Msa1077340:intron 35.0%
TAGTTAAGGCCTATTTGGAT+TGG - chr7_2:75982716-75982735 Msa1077340:intron 35.0%
TAAGAGCTTGTGAGATTGTT+TGG - chr7_2:75982753-75982772 Msa1077340:intron 35.0%
AAGAGCTTGTGAGATTGTTT+GGG - chr7_2:75982754-75982773 Msa1077340:intron 35.0%
! CTTATTTCTTAAAGCTCTCC+AGG - chr7_2:75982824-75982843 Msa1077340:intron 35.0%
TCTGATTTCTTAAGCTATCC+TGG + chr7_2:75982845-75982864 None:intergenic 35.0%
!! TGCATAAGCTATTTCTGTGA+CGG + chr7_2:75982877-75982896 None:intergenic 35.0%
! ATTAGTTTAAGAGGGTATGC+GGG + chr7_2:75983043-75983062 None:intergenic 35.0%
GTCTTCAGAAGGAAACATAA+TGG + chr7_2:75983105-75983124 None:intergenic 35.0%
TGAAGTTCAGAAGTAGTTTC+AGG + chr7_2:75983127-75983146 None:intergenic 35.0%
CAGACTGTCATGATTTCTTA+TGG - chr7_2:75983145-75983164 Msa1077340:intron 35.0%
GTAAGATGGGAATGAATTCA+AGG - chr7_2:75983218-75983237 Msa1077340:intron 35.0%
! ATATCATCTGACAGTGCTTT+TGG - chr7_2:75983387-75983406 Msa1077340:intron 35.0%
AGAATACTGAAAATGTTGGC+AGG - chr7_2:75983471-75983490 Msa1077340:intron 35.0%
CTTGTAATTCGCGAAGAATT+TGG - chr7_2:75983630-75983649 Msa1077340:intron 35.0%
TATATGGTTCACGATCTCAA+AGG - chr7_2:75983806-75983825 Msa1077340:intron 35.0%
ACTTGGCACTCATTTACAAA+TGG + chr7_2:75983997-75984016 None:intergenic 35.0%
TCAATAGGTAAGAGCAGAAA+TGG + chr7_2:75984020-75984039 None:intergenic 35.0%
TGCTCTTACCTATTGATGTT+TGG - chr7_2:75984024-75984043 Msa1077340:intron 35.0%
CTTACCTATTGATGTTTGGT+AGG - chr7_2:75984028-75984047 Msa1077340:intron 35.0%
TGTTTGGTAGGAGTGAAAAT+AGG - chr7_2:75984040-75984059 Msa1077340:intron 35.0%
TAGTAGATTGAACATAGTGC+AGG - chr7_2:75984077-75984096 Msa1077340:intron 35.0%
!!! CCTGGTTTTAAGTTCAATCA+TGG + chr7_2:75984141-75984160 None:intergenic 35.0%
CCATGATTGAACTTAAAACC+AGG - chr7_2:75984138-75984157 Msa1077340:five_prime_UTR 35.0%
GAACTTAAAACCAGGATTTC+TGG - chr7_2:75984146-75984165 Msa1077340:five_prime_UTR 35.0%
! CGGAACTTTAAAAGATTCGT+TGG - chr7_2:75984196-75984215 Msa1077340:five_prime_UTR 35.0%
! GAACAGTTCACAAGAGTATA+TGG + chr7_2:75984248-75984267 None:intergenic 35.0%
AGAAGAAGAAGAACCTTTGG+CGG + chr7_2:75980538-75980557 None:intergenic 40.0%
GCAACAGATTGCTAATCTTC+AGG - chr7_2:75981152-75981171 Msa1077340:CDS 40.0%
TTGCTAATCTTCAGGGTAGT+CGG - chr7_2:75981160-75981179 Msa1077340:CDS 40.0%
CAAAGGGTTCAAGTGAACAA+TGG + chr7_2:75981221-75981240 None:intergenic 40.0%
GGCAATGTCAGCTATGAATA+AGG - chr7_2:75981401-75981420 Msa1077340:intron 40.0%
TACACCAGGTTTCCAAGAAA+GGG - chr7_2:75981525-75981544 Msa1077340:intron 40.0%
!! CAAGCTGAGAAGTTGTTTCT+AGG - chr7_2:75981585-75981604 Msa1077340:intron 40.0%
GATTTGAATCTGTGACATCC+AGG - chr7_2:75981607-75981626 Msa1077340:intron 40.0%
TCATGAACTAACATGAGAGC+AGG + chr7_2:75981668-75981687 None:intergenic 40.0%
TTTGTGCGAGTTTGATGGAA+TGG - chr7_2:75981868-75981887 Msa1077340:intron 40.0%
AGAACTGCTATTATCAAGGC+TGG + chr7_2:75982073-75982092 None:intergenic 40.0%
GTTGGATTCATTGCAGCAAA+TGG - chr7_2:75982181-75982200 Msa1077340:intron 40.0%
!! ATAACTTTGGCTTGCTTTGC+TGG + chr7_2:75982209-75982228 None:intergenic 40.0%
AAAGCAAGCCAAAGTTATGC+AGG - chr7_2:75982211-75982230 Msa1077340:CDS 40.0%
CTGGAATTCCTGCATAACTT+TGG + chr7_2:75982222-75982241 None:intergenic 40.0%
GCAGGAATTCCAGAAACAAT+CGG - chr7_2:75982229-75982248 Msa1077340:CDS 40.0%
AGATGTCATAGATGATGCCT+TGG - chr7_2:75982376-75982395 Msa1077340:CDS 40.0%
TTCAGCTTCATCATCATCCA+AGG + chr7_2:75982396-75982415 None:intergenic 40.0%
ACCTTGTGTTACAATCCTTG+AGG - chr7_2:75982577-75982596 Msa1077340:intron 40.0%
CCTTGTGTTACAATCCTTGA+GGG - chr7_2:75982578-75982597 Msa1077340:intron 40.0%
CTACCAAATCGTATCCTACT+AGG - chr7_2:75982687-75982706 Msa1077340:intron 40.0%
TCACCTAGTAGGATACGATT+TGG + chr7_2:75982693-75982712 None:intergenic 40.0%
! ACATTATCAAGAGAAGCGTG+TGG - chr7_2:75983071-75983090 Msa1077340:intron 40.0%
! AGTAGTTTCAGGTCTTCAGA+AGG + chr7_2:75983116-75983135 None:intergenic 40.0%
! GGCTTTGTCACTTAGTTACA+AGG - chr7_2:75983166-75983185 Msa1077340:intron 40.0%
! TCACTTACCCTTTTCTTGAC+AGG - chr7_2:75983297-75983316 Msa1077340:intron 40.0%
TCAAGCACCTGTCAAGAAAA+GGG + chr7_2:75983307-75983326 None:intergenic 40.0%
ATCAAGCACCTGTCAAGAAA+AGG + chr7_2:75983308-75983327 None:intergenic 40.0%
TGACAGGTGCTTGATGAAAT+CGG - chr7_2:75983313-75983332 Msa1077340:intron 40.0%
AAAGCTTATTCCTACCTGTG+AGG + chr7_2:75983350-75983369 None:intergenic 40.0%
AGGATAGGGAAAGAGTTACA+CGG + chr7_2:75983503-75983522 None:intergenic 40.0%
CACTCCTACCAAACATCAAT+AGG + chr7_2:75984035-75984054 None:intergenic 40.0%
TAGGAGTGAAAATAGGCAAG+AGG - chr7_2:75984047-75984066 Msa1077340:intron 40.0%
GAAAATAGGCAAGAGGAGAA+CGG - chr7_2:75984054-75984073 Msa1077340:intron 40.0%
!!! AACCAGGATTTCTGGTGTTT+TGG - chr7_2:75984154-75984173 Msa1077340:five_prime_UTR 40.0%
TACCAAAACACCAGAAATCC+TGG + chr7_2:75984159-75984178 None:intergenic 40.0%
GTATTCCACTAGAACTCACA+CGG - chr7_2:75984176-75984195 Msa1077340:five_prime_UTR 40.0%
!!! AGATTCGTTGGTTTTGTGGA+AGG - chr7_2:75984208-75984227 Msa1077340:five_prime_UTR 40.0%
!!! TTGGTTTTGTGGAAGGTGAA+TGG - chr7_2:75984215-75984234 Msa1077340:five_prime_UTR 40.0%
TGCGCTATTGTCAACAACGA+AGG + chr7_2:75980488-75980507 None:intergenic 45.0%
GAAATGACTAACGCCACTAG+AGG - chr7_2:75980664-75980683 Msa1077340:three_prime_UTR 45.0%
AACTGCTAAGACAGGAAACG+AGG - chr7_2:75980932-75980951 Msa1077340:intron 45.0%
TACTAGCTCGTCAGCTGATA+AGG - chr7_2:75981124-75981143 Msa1077340:intron 45.0%
TGCTAATCTTCAGGGTAGTC+GGG - chr7_2:75981161-75981180 Msa1077340:CDS 45.0%
GCACATTCTTCTGTTGCTGT+TGG - chr7_2:75981360-75981379 Msa1077340:intron 45.0%
! TCTGTTGCTGTTGGCATGAA+AGG - chr7_2:75981369-75981388 Msa1077340:intron 45.0%
GTACACCAGGTTTCCAAGAA+AGG - chr7_2:75981524-75981543 Msa1077340:intron 45.0%
ACACCAGGTTTCCAAGAAAG+GGG - chr7_2:75981526-75981545 Msa1077340:intron 45.0%
CTGGGGAGGGTAAATCTATA+TGG - chr7_2:75981551-75981570 Msa1077340:intron 45.0%
GCAAGTTTGTGCGAGTTTGA+TGG - chr7_2:75981863-75981882 Msa1077340:intron 45.0%
! GGATGATGATGAAGCTGAAG+AGG - chr7_2:75982397-75982416 Msa1077340:CDS 45.0%
CCCTCAAGGATTGTAACACA+AGG + chr7_2:75982581-75982600 None:intergenic 45.0%
! CTAAGCATTGCTAACCCTCA+AGG + chr7_2:75982595-75982614 None:intergenic 45.0%
AGTTACATGGGTCATGCCAT+TGG - chr7_2:75982958-75982977 Msa1077340:intron 45.0%
GTTACATGGGTCATGCCATT+GGG - chr7_2:75982959-75982978 Msa1077340:intron 45.0%
CAAGATCATGGATAGCCCAA+TGG + chr7_2:75982977-75982996 None:intergenic 45.0%
TTGGGCTATCCATGATCTTG+TGG - chr7_2:75982977-75982996 Msa1077340:intron 45.0%
AGTTATCGTCAGCTCCCAAA+GGG - chr7_2:75983435-75983454 Msa1077340:CDS 45.0%
TTTGCTGCGATTCTCCCTTT+GGG + chr7_2:75983452-75983471 None:intergenic 45.0%
!! TGATGACCTTGAGAAGCGTT+TGG - chr7_2:75983749-75983768 Msa1077340:intron 45.0%
CTGTAGTTGAGCCATAGTTG+TGG - chr7_2:75983951-75983970 Msa1077340:intron 45.0%
! GGTAAGAGCAGAAATGGACT+TGG + chr7_2:75984014-75984033 None:intergenic 45.0%
! AAGTTCCGTGTGAGTTCTAG+TGG + chr7_2:75984184-75984203 None:intergenic 45.0%
!! GTTAAATTAAATATATTAAA+AGG + chr7_2:75980829-75980848 None:intergenic 5.0%
GAAGAAGAACCTTTGGCGGT+GGG + chr7_2:75980534-75980553 None:intergenic 50.0%
AGAAGAAGAACCTTTGGCGG+TGG + chr7_2:75980535-75980554 None:intergenic 50.0%
CTCGTCAGCTGATAAGGCTT+AGG - chr7_2:75981130-75981149 Msa1077340:intron 50.0%
! GGTTGCTTGTCATTTCGTGC+AGG - chr7_2:75981329-75981348 Msa1077340:intron 50.0%
!! TGGCATGAAAGGCGCTACTA+AGG - chr7_2:75981380-75981399 Msa1077340:intron 50.0%
AAAGGGTGGTCTAGTACACC+AGG - chr7_2:75981511-75981530 Msa1077340:intron 50.0%
CACCAGGTTTCCAAGAAAGG+GGG - chr7_2:75981527-75981546 Msa1077340:intron 50.0%
GTTTCCAAGAAAGGGGGTCT+GGG - chr7_2:75981533-75981552 Msa1077340:intron 50.0%
TTTCCAAGAAAGGGGGTCTG+GGG - chr7_2:75981534-75981553 Msa1077340:intron 50.0%
TGTGACATCCAGGTCACACA+AGG - chr7_2:75981617-75981636 Msa1077340:intron 50.0%
ACTAACATGAGAGCAGGCCT+TGG + chr7_2:75981662-75981681 None:intergenic 50.0%
TGTGTGTGCATGTGACAGGA+GGG + chr7_2:75981990-75982009 None:intergenic 50.0%
TGTGTGTGTGTGCATGTGAC+AGG + chr7_2:75981994-75982013 None:intergenic 50.0%
CACACACACACACACACACA+CGG - chr7_2:75982002-75982021 Msa1077340:intron 50.0%
ACACACACACACACACGGAA+AGG - chr7_2:75982009-75982028 Msa1077340:intron 50.0%
CACACACACACACACGGAAA+GGG - chr7_2:75982010-75982029 Msa1077340:intron 50.0%
!! CCATCTGTGCCGATTGTTTC+TGG + chr7_2:75982241-75982260 None:intergenic 50.0%
CCAGAAACAATCGGCACAGA+TGG - chr7_2:75982238-75982257 Msa1077340:CDS 50.0%
!! AGGGTGTTACTGCCGAAGTT+AGG + chr7_2:75982640-75982659 None:intergenic 50.0%
AACTTCGGCAGTAACACCCT+TGG - chr7_2:75982640-75982659 Msa1077340:intron 50.0%
ACTTCGGCAGTAACACCCTT+GGG - chr7_2:75982641-75982660 Msa1077340:intron 50.0%
GTCGATATTGCCTCACAGGT+AGG - chr7_2:75983337-75983356 Msa1077340:intron 50.0%
CAGTTATCGTCAGCTCCCAA+AGG - chr7_2:75983434-75983453 Msa1077340:CDS 50.0%
CTTTGCTGCGATTCTCCCTT+TGG + chr7_2:75983453-75983472 None:intergenic 50.0%
!! TGACCTTGAGAAGCGTTTGG+CGG - chr7_2:75983752-75983771 Msa1077340:intron 50.0%
ACCAAGAAACCCACCGCCAA+AGG - chr7_2:75980522-75980541 Msa1077340:three_prime_UTR 55.0%
! ACCTTTGGCGGTGGGTTTCT+TGG + chr7_2:75980526-75980545 None:intergenic 55.0%
AGGCATAGCAACTCACACGC+AGG - chr7_2:75981194-75981213 Msa1077340:intron 55.0%
GACCCCCTTTCTTGGAAACC+TGG + chr7_2:75981532-75981551 None:intergenic 55.0%
GGTTTCCAAGAAAGGGGGTC+TGG - chr7_2:75981532-75981551 Msa1077340:intron 55.0%
GCAACCTTGCGATTGTGCCA+AGG - chr7_2:75981642-75981661 Msa1077340:intron 55.0%
GTGTGTGTGCATGTGACAGG+AGG + chr7_2:75981991-75982010 None:intergenic 55.0%
CTTCGGCAGTAACACCCTTG+GGG - chr7_2:75982642-75982661 Msa1077340:intron 55.0%
!! CGGTGTCGATATTGCCTCAC+AGG - chr7_2:75983333-75983352 Msa1077340:intron 55.0%
GGTAGTCGGGCTCAGATGAG+AGG - chr7_2:75981174-75981193 Msa1077340:CDS 60.0%
CAAGAAAGGGGGTCTGGGGA+GGG - chr7_2:75981538-75981557 Msa1077340:intron 60.0%
GGTTGCTGCCTTGTGTGACC+TGG + chr7_2:75981628-75981647 None:intergenic 60.0%
CAGGCCTTGGCACAATCGCA+AGG + chr7_2:75981649-75981668 None:intergenic 60.0%
GAGCCGCCAAACGCTTCTCA+AGG + chr7_2:75983758-75983777 None:intergenic 60.0%
CCTCCCCAGACCCCCTTTCT+TGG + chr7_2:75981540-75981559 None:intergenic 65.0%
CCAAGAAAGGGGGTCTGGGG+AGG - chr7_2:75981537-75981556 Msa1077340:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75980341 75984303 75980341 ID=Msa1077340;Name=Msa1077340
chr7_2 mRNA 75980341 75984303 75980341 ID=Msa1077340-mRNA-1;Parent=Msa1077340;Name=Msa1077340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=169|0.9|0.90|1|0.9|0.90|11|512|191
chr7_2 exon 75980341 75980904 75980341 ID=Msa1077340-mRNA-1:exon:18215;Parent=Msa1077340-mRNA-1
chr7_2 exon 75981152 75981207 75981152 ID=Msa1077340-mRNA-1:exon:18214;Parent=Msa1077340-mRNA-1
chr7_2 exon 75981290 75981325 75981290 ID=Msa1077340-mRNA-1:exon:18213;Parent=Msa1077340-mRNA-1
chr7_2 exon 75982202 75982282 75982202 ID=Msa1077340-mRNA-1:exon:18212;Parent=Msa1077340-mRNA-1
chr7_2 exon 75982376 75982447 75982376 ID=Msa1077340-mRNA-1:exon:18211;Parent=Msa1077340-mRNA-1
chr7_2 exon 75983222 75983293 75983222 ID=Msa1077340-mRNA-1:exon:18210;Parent=Msa1077340-mRNA-1
chr7_2 exon 75983429 75983470 75983429 ID=Msa1077340-mRNA-1:exon:18209;Parent=Msa1077340-mRNA-1
chr7_2 exon 75983691 75983741 75983691 ID=Msa1077340-mRNA-1:exon:18208;Parent=Msa1077340-mRNA-1
chr7_2 exon 75983840 75983874 75983840 ID=Msa1077340-mRNA-1:exon:18207;Parent=Msa1077340-mRNA-1
chr7_2 exon 75983959 75984003 75983959 ID=Msa1077340-mRNA-1:exon:18206;Parent=Msa1077340-mRNA-1
chr7_2 exon 75984101 75984303 75984101 ID=Msa1077340-mRNA-1:exon:18205;Parent=Msa1077340-mRNA-1
chr7_2 five_prime_UTR 75984135 75984303 75984135 ID=Msa1077340-mRNA-1:five_prime_utr;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75984101 75984134 75984101 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75983959 75984003 75983959 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75983840 75983874 75983840 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75983691 75983741 75983691 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75983429 75983470 75983429 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75983222 75983293 75983222 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75982376 75982447 75982376 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75982202 75982282 75982202 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75981290 75981325 75981290 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75981152 75981207 75981152 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 CDS 75980853 75980904 75980853 ID=Msa1077340-mRNA-1:cds;Parent=Msa1077340-mRNA-1
chr7_2 three_prime_UTR 75980341 75980852 75980341 ID=Msa1077340-mRNA-1:three_prime_utr;Parent=Msa1077340-mRNA-1
Gene Sequence

>Msa1077340

ATGAACATCTTCACCAAGAAACCCACCGCCAAAGAGGCTCTTCGTGAGAGTAAACGTGAAATGACTAACGCCACTAGAGGTATTGAGAGGGAAATTGGATCATTACAATTGGAAGAAAAGAAATTAGTTGCTGAGATTAAGAGAACTGCTAAGACAGGAAACGAGGGTAGTCGGGCTCAGATGAGAGGCATAGCAACTCACACGCAGGCAATGCATGCACATTCTTCTGTTGCTGTTGGCATGAAAGGCGCTACTAAGGCAATGTCAGCTATGAATAAGCAAATGGAACCAGCAAAGCAAGCCAAAGTTATGCAGGAATTCCAGAAACAATCGGCACAGATGGATATGACTACTGAAATGATGTCAGATGTCATAGATGATGCCTTGGATGATGATGAAGCTGAAGAGGAAACTGAAGAGCTTACAAATCAAGTGCTTGATGAAATCGGTGTCGATATTGCCTCACAGTTATCGTCAGCTCCCAAAGGGAGAATCGCAGCAAAGAATACTGAAAATGTTGGCAGCTCGGGCGTTGATGACCTTGAGAAGCGTTTGGCGGCTCTAAGAAACCCATAA

Protein sequence

>Msa1077340

MNIFTKKPTAKEALRESKREMTNATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEGSRAQMRGIATHTQAMHAHSSVAVGMKGATKAMSAMNKQMEPAKQAKVMQEFQKQSAQMDMTTEMMSDVIDDALDDDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIAAKNTENVGSSGVDDLEKRLAALRNP*