AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164020 MtrunA17_Chr7g0261511 89.151 212 2 1 1 191 1 212 3.32e-133 371
Msa1164020 MtrunA17_Chr1g0183621 72.642 212 37 1 1 191 5 216 1.13e-109 312
Msa1164020 MtrunA17_Chr2g0303251 70.093 214 39 2 1 189 1 214 2.74e-94 273
Msa1164020 MtrunA17_Chr2g0300321 40.826 218 98 3 3 189 4 221 2.90e-34 120
Msa1164020 MtrunA17_Chr8g0343561 43.182 176 79 1 3 157 4 179 1.84e-31 113
Msa1164020 MtrunA17_Chr4g0028231 30.108 186 99 3 1 160 5 185 1.94e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164020 AT1G03950.1 75.714 210 30 1 1 189 1 210 3.36e-110 313
Msa1164020 AT5G44560.1 65.455 220 45 2 1 189 1 220 7.62e-93 270
Msa1164020 AT5G44560.2 64.500 200 40 2 21 189 1 200 7.23e-82 241
Msa1164020 AT5G44560.4 67.416 178 37 1 1 157 1 178 2.98e-79 234
Msa1164020 AT5G44560.3 65.217 138 27 1 1 117 1 138 5.93e-56 174
Msa1164020 AT2G06530.1 43.182 220 93 5 2 189 4 223 2.95e-37 129
Msa1164020 AT2G06530.2 42.289 201 84 5 21 189 2 202 1.74e-30 110
Msa1164020 AT5G22950.1 29.130 230 118 5 1 190 5 229 1.85e-12 63.9

Find 72 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTGTGCCGATTGTTTC+TGG 0.092577 7_4:+55531752 None:intergenic
GAACTTAAAACCAGGATTTC+TGG 0.141192 7_4:-55529858 Msa1164020:three_prime_UTR
ATAACTACAGCCAAAATTTA+TGG 0.170867 7_4:+55530215 None:intergenic
ATAACTTTGGCTTGCTTTGC+TGG 0.189100 7_4:+55531784 None:intergenic
TCTAAGAAACCCATAAATTT+TGG 0.196836 7_4:-55530225 Msa1164020:exon
AACCAGGATTTCTGGTGTTT+TGG 0.273580 7_4:-55529850 Msa1164020:three_prime_UTR
CTTTGCTGCGATTCTCCCTT+TGG 0.289266 7_4:+55530530 None:intergenic
ATAGGTATTGAGAGGGAAAT+TGG 0.295401 7_4:-55533176 Msa1164020:intron
ACCTTTGGCGGTGGGTTTCT+TGG 0.303398 7_4:+55533405 None:intergenic
TGCTCTTACCTATTGATGTT+TGG 0.330713 7_4:-55529980 Msa1164020:three_prime_UTR
TAACTACAGCCAAAATTTAT+GGG 0.343069 7_4:+55530216 None:intergenic
CACTCCTACCAAACATCAAT+AGG 0.367797 7_4:+55529972 None:intergenic
GGCAATGTCAGCTATGAATA+AGG 0.369472 7_4:-55532553 Msa1164020:intron
ATGAACAGTTCACGAGTATA+TGG 0.375254 7_4:+55529759 None:intergenic
TTTGCTGCGATTCTCCCTTT+GGG 0.375553 7_4:+55530531 None:intergenic
TGTTTGGTAGGAGTGAAAAT+AGG 0.381327 7_4:-55529964 Msa1164020:three_prime_UTR
TCAATAGGTAAGAGCAGAAA+TGG 0.385517 7_4:+55529987 None:intergenic
CTGATGATACAAGGTTTAGA+TGG 0.405293 7_4:+55529731 None:intergenic
AAATATATAGTCCACAACTA+TGG 0.413085 7_4:+55530042 None:intergenic
CTGGAATTCCTGCATAACTT+TGG 0.413362 7_4:+55531771 None:intergenic
GGAAATTGGATCATTACAAT+TGG 0.414552 7_4:-55533162 Msa1164020:CDS
TGCTAATCTTCAGGGTAGTC+GGG 0.416103 7_4:-55532781 Msa1164020:intron
TGATGACCTTGAGAAGCGTT+TGG 0.421971 7_4:-55530252 Msa1164020:CDS
GCACATTCTTCTGTTGCTGT+TGG 0.431120 7_4:-55532594 Msa1164020:CDS
CTTACCTATTGATGTTTGGT+AGG 0.431148 7_4:-55529976 Msa1164020:three_prime_UTR
TCTGTTGCTGTTGGCATGAA+AGG 0.439539 7_4:-55532585 Msa1164020:CDS
CGGAACTTTAAAAGATTCGT+TGG 0.444146 7_4:-55529808 Msa1164020:three_prime_UTR
AACCTTGTATCATCAGTTGT+TGG 0.454584 7_4:-55529724 None:intergenic
TTGCTAATCTTCAGGGTAGT+CGG 0.468100 7_4:-55532782 Msa1164020:intron
TGACAGGTGCTTGATGAAAT+CGG 0.480841 7_4:-55530678 Msa1164020:intron
TACCAAAACACCAGAAATCC+TGG 0.482126 7_4:+55529848 None:intergenic
AAGTTCCGTGTGAGTTCTAG+TGG 0.485468 7_4:+55529823 None:intergenic
TGGCATGAAAGGCGCTACTA+AGG 0.493496 7_4:-55532574 Msa1164020:CDS
ACTTGGCACTCATTTACAAA+TGG 0.494947 7_4:+55530010 None:intergenic
CGGTGTCGATATTGCCTCAC+AGG 0.505099 7_4:-55530658 Msa1164020:intron
ATTAAGAGAACTGCTAAGAC+AGG 0.519875 7_4:-55533018 Msa1164020:CDS
AGAAGAAGAACCTTTGGCGG+TGG 0.535725 7_4:+55533396 None:intergenic
AAAGCAAGCCAAAGTTATGC+AGG 0.535984 7_4:-55531779 Msa1164020:CDS
TGACCTTGAGAAGCGTTTGG+CGG 0.541826 7_4:-55530249 Msa1164020:CDS
GAAGAAGAACCTTTGGCGGT+GGG 0.543040 7_4:+55533397 None:intergenic
ACCAAGAAACCCACCGCCAA+AGG 0.550200 7_4:-55533406 Msa1164020:intron
AGTTATCTTCAGCTCCCAAA+GGG 0.551907 7_4:-55530545 Msa1164020:CDS
CCAGAAACAATCGGCACAGA+TGG 0.552247 7_4:-55531752 Msa1164020:CDS
GCAGGAATTCCAGAAACAAT+CGG 0.554202 7_4:-55531761 Msa1164020:CDS
GCAAAGAATACTGAAAATGT+TGG 0.554829 7_4:-55530513 Msa1164020:CDS
AGAATACTGAAAATGTTGGC+AGG 0.560171 7_4:-55530509 Msa1164020:intron
AGATGTCATAGATGATGCCT+TGG 0.571244 7_4:-55531614 Msa1164020:CDS
CAGTTATCTTCAGCTCCCAA+AGG 0.578514 7_4:-55530546 Msa1164020:CDS
CCATGATTGAACTTAAAACC+AGG 0.581112 7_4:-55529866 Msa1164020:three_prime_UTR
TTCAGCTTCATCATCATCCA+AGG 0.587316 7_4:+55531597 None:intergenic
TAGTAGATTGAACATAGTGC+AGG 0.588553 7_4:-55529927 Msa1164020:three_prime_UTR
GGTAAGAGCAGAAATGGACT+TGG 0.588901 7_4:+55529993 None:intergenic
AGAAGAAGAAGAACCTTTGG+CGG 0.589246 7_4:+55533393 None:intergenic
GAGCCGCCAAACGCTTCTCA+AGG 0.592287 7_4:+55530246 None:intergenic
TACCAACAACTGATGATACA+AGG 0.595486 7_4:+55529722 None:intergenic
TCATATATATAGGTATTGAG+AGG 0.599716 7_4:-55533184 Msa1164020:intron
TAGGAGTGAAAATAGGCAAG+AGG 0.602779 7_4:-55529957 Msa1164020:three_prime_UTR
AGAGAATAGATTACCTCTAG+TGG 0.604125 7_4:+55533257 None:intergenic
GGATGATGATGAAGCTGAAG+AGG 0.605718 7_4:-55531593 Msa1164020:CDS
TGGTGAAGATGTTCATCGTG+CGG 0.621599 7_4:+55533425 None:intergenic
GGTAGTCGGGCTCAGATGAG+AGG 0.622685 7_4:-55532768 Msa1164020:CDS
GAAAATAGGCAAGAGGAGAA+CGG 0.628842 7_4:-55529950 Msa1164020:three_prime_UTR
CATATATATAGGTATTGAGA+GGG 0.628943 7_4:-55533183 Msa1164020:intron
AAAGTAGTAGGAAAGTAACA+AGG 0.639375 7_4:-55533499 Msa1164020:five_prime_UTR
CTGTAGTTGAGCCATAGTTG+TGG 0.641761 7_4:-55530053 Msa1164020:three_prime_UTR
TGCGGTATTGTCAACAACGA+AGG 0.653386 7_4:+55533443 None:intergenic
GTATTCCACTAGAACTCACA+CGG 0.655449 7_4:-55529828 Msa1164020:three_prime_UTR
TATATGGTTCACGATCTCAA+AGG 0.658434 7_4:-55530195 Msa1164020:three_prime_UTR
GAAATGACTAACGCCACTAG+AGG 0.662249 7_4:-55533270 Msa1164020:intron
AGGCATAGCAACTCACACGC+AGG 0.676531 7_4:-55532748 Msa1164020:intron
AACTGCTAAGACAGGAAACG+AGG 0.681032 7_4:-55533010 Msa1164020:intron
AAAGCTTATTCCTACCTGTG+AGG 0.707349 7_4:+55530644 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTAATTAATAAAATT+AGG + chr7_4:55530107-55530126 None:intergenic 0.0%
!! AAAAAAAATATTATAATAAA+AGG + chr7_4:55531787-55531806 None:intergenic 0.0%
!! TTTAATACTATCATATATAT+AGG - chr7_4:55530122-55530141 Msa1164020:three_prime_UTR 10.0%
!! TAAAGTTAGTAATAATAATA+TGG - chr7_4:55530237-55530256 Msa1164020:CDS 10.0%
!!! ATTTATAAATTAGTTTAAGA+GGG + chr7_4:55532376-55532395 None:intergenic 10.0%
!!! TATTTATAAATTAGTTTAAG+AGG + chr7_4:55532377-55532396 None:intergenic 10.0%
!!! TATGATATATTAATTTTAAG+AGG - chr7_4:55533221-55533240 Msa1164020:intron 10.0%
!!! TAGCATTTGATTTTTATTTA+TGG - chr7_4:55531160-55531179 Msa1164020:intron 15.0%
!!! ATATCATATATCATTTTTCA+AGG + chr7_4:55533209-55533228 None:intergenic 15.0%
!!! AAATTTGATGTTTTATTCTC+AGG - chr7_4:55530463-55530482 Msa1164020:intron 20.0%
!!! AATTTGATGTTTTATTCTCA+GGG - chr7_4:55530464-55530483 Msa1164020:intron 20.0%
!! AAAAACACAACAAAAACAAA+GGG + chr7_4:55530611-55530630 None:intergenic 20.0%
!! AAAAAACACAACAAAAACAA+AGG + chr7_4:55530612-55530631 None:intergenic 20.0%
!!! TGTCCATTTTCATAATATAA+AGG - chr7_4:55530821-55530840 Msa1164020:intron 20.0%
!!! GTCCATTTTCATAATATAAA+GGG - chr7_4:55530822-55530841 Msa1164020:intron 20.0%
!!! TGCAAATGAAAATTCTTTTT+TGG - chr7_4:55531083-55531102 Msa1164020:intron 20.0%
!!! AAATGAAAATTCTTTTTTGG+AGG - chr7_4:55531086-55531105 Msa1164020:intron 20.0%
!!! TATCAATGTTTTGTTTAACT+CGG + chr7_4:55531430-55531449 None:intergenic 20.0%
!! GTTAAACAAAACATTGATAT+TGG - chr7_4:55531431-55531450 Msa1164020:intron 20.0%
!!! TTTTCTAGAATTTTACAAGT+TGG - chr7_4:55531611-55531630 Msa1164020:CDS 20.0%
!!! AAACAAAAGTATAGTTACAT+GGG - chr7_4:55532271-55532290 Msa1164020:intron 20.0%
!!! GTATTTTATTTGTACTCTTT+TGG - chr7_4:55532747-55532766 Msa1164020:intron 20.0%
!!! AACTTTCTTATTGTTTTTAG+AGG + chr7_4:55532859-55532878 None:intergenic 20.0%
!! ACAAGTTAAAATTTCTTAAG+CGG - chr7_4:55532987-55533006 Msa1164020:intron 20.0%
!!! GATATATTAATTTTAAGAGG+TGG - chr7_4:55533224-55533243 Msa1164020:intron 20.0%
! AGAAAAAAAGAGAAAGTAGT+AGG - chr7_4:55529805-55529824 Msa1164020:three_prime_UTR 25.0%
!!! TCATATATATAGGTATTGAG+AGG - chr7_4:55530132-55530151 Msa1164020:three_prime_UTR 25.0%
!!! CATATATATAGGTATTGAGA+GGG - chr7_4:55530133-55530152 Msa1164020:three_prime_UTR 25.0%
!!! TATGGATTGTTTGTTTTGTT+AGG - chr7_4:55530255-55530274 Msa1164020:CDS 25.0%
!!! ATCTGCAAATTTTTAGTCAT+AGG - chr7_4:55530342-55530361 Msa1164020:intron 25.0%
! TTATCTACTGACATAAACAA+AGG + chr7_4:55530411-55530430 None:intergenic 25.0%
! TCAAATAAGTTAATTCGAAC+AGG - chr7_4:55530433-55530452 Msa1164020:intron 25.0%
!! TATGATATTTGACTTAGCTA+TGG - chr7_4:55530670-55530689 Msa1164020:CDS 25.0%
! CACCCTTTATATTATGAAAA+TGG + chr7_4:55530827-55530846 None:intergenic 25.0%
!! CATTTTCATAATATAAAGGG+TGG - chr7_4:55530825-55530844 Msa1164020:intron 25.0%
! ATATTGTTCCAAAACTTGAT+TGG - chr7_4:55531017-55531036 Msa1164020:intron 25.0%
! TATTGTTCCAAAACTTGATT+GGG - chr7_4:55531018-55531037 Msa1164020:intron 25.0%
!! TGTAATAGCAACATTTTGTT+TGG - chr7_4:55531042-55531061 Msa1164020:intron 25.0%
!! TAGAGTTTTCATGAATTTTG+AGG - chr7_4:55531120-55531139 Msa1164020:intron 25.0%
!! TGTTCATTTGCTAAATATTG+TGG - chr7_4:55531269-55531288 Msa1164020:intron 25.0%
! AATGGTGTAGAAAATATTTG+TGG + chr7_4:55531460-55531479 None:intergenic 25.0%
! AATCATTGTTTACACTTCAA+TGG - chr7_4:55531646-55531665 Msa1164020:intron 25.0%
! TTAAAATGACCTGTAGTTTA+TGG - chr7_4:55531867-55531886 Msa1164020:intron 25.0%
! GTAAATAAACCAATCCAAAT+AGG + chr7_4:55532053-55532072 None:intergenic 25.0%
!! CATGTAACTATACTTTTGTT+TGG + chr7_4:55532272-55532291 None:intergenic 25.0%
!! CAAACAAAAGTATAGTTACA+TGG - chr7_4:55532270-55532289 Msa1164020:intron 25.0%
! CTAATAATCAGTGAAAACTT+AGG - chr7_4:55532339-55532358 Msa1164020:intron 25.0%
! TAGTTACAAGGTTTAAGAAA+TGG - chr7_4:55532503-55532522 Msa1164020:intron 25.0%
! TTTATTCACAAAGAGTAAGA+TGG - chr7_4:55532529-55532548 Msa1164020:intron 25.0%
! TTATTCACAAAGAGTAAGAT+GGG - chr7_4:55532530-55532549 Msa1164020:intron 25.0%
! GCTAATATCATCTTAATGTA+AGG + chr7_4:55532569-55532588 None:intergenic 25.0%
!!! CTTATTGTTTTTAGAGGATA+GGG + chr7_4:55532853-55532872 None:intergenic 25.0%
!!! TCTTATTGTTTTTAGAGGAT+AGG + chr7_4:55532854-55532873 None:intergenic 25.0%
! CAATAAGAAAGTTAAGAGAA+AGG - chr7_4:55532866-55532885 Msa1164020:intron 25.0%
! GTAATAACATCAAAATTCCA+AGG + chr7_4:55533033-55533052 None:intergenic 25.0%
!!! ATTTTGATGTTATTACAGCT+CGG - chr7_4:55533037-55533056 Msa1164020:CDS 25.0%
!! TCTAAGAAACCCATAAATTT+TGG - chr7_4:55533091-55533110 Msa1164020:intron 25.0%
! TAACTACAGCCAAAATTTAT+GGG + chr7_4:55533103-55533122 None:intergenic 25.0%
! ATAACTACAGCCAAAATTTA+TGG + chr7_4:55533104-55533123 None:intergenic 25.0%
!!! AAATTTTGGCTGTAGTTATA+TGG - chr7_4:55533105-55533124 Msa1164020:intron 25.0%
! AAATATATAGTCCACAACTA+TGG + chr7_4:55533277-55533296 None:intergenic 25.0%
! AAAGTTTTACGAGTAGAACA+CGG - chr7_4:55529755-55529774 Msa1164020:three_prime_UTR 30.0%
AAAGTAGTAGGAAAGTAACA+AGG - chr7_4:55529817-55529836 Msa1164020:three_prime_UTR 30.0%
!! TTTAATTGATTTTCCTGCAG+AGG - chr7_4:55530003-55530022 Msa1164020:three_prime_UTR 30.0%
GGAAATTGGATCATTACAAT+TGG - chr7_4:55530154-55530173 Msa1164020:three_prime_UTR 30.0%
ATTGTTCCAAAACTTGATTG+GGG - chr7_4:55531019-55531038 Msa1164020:intron 30.0%
TGGAGCAATGAACAATATTA+AGG - chr7_4:55531216-55531235 Msa1164020:intron 30.0%
GGAGCAATGAACAATATTAA+GGG - chr7_4:55531217-55531236 Msa1164020:intron 30.0%
AACAATATTAAGGGTTGCTA+TGG - chr7_4:55531226-55531245 Msa1164020:intron 30.0%
AAGGGACTTCAGAAATTAAA+AGG - chr7_4:55531354-55531373 Msa1164020:intron 30.0%
TTGAAGAACTGCTATTATCA+AGG + chr7_4:55531403-55531422 None:intergenic 30.0%
AACGGTAAAAGACTGAAAAA+TGG + chr7_4:55531478-55531497 None:intergenic 30.0%
! TTTACCGTTTCCTAATTTGT+TGG - chr7_4:55531489-55531508 Msa1164020:intron 30.0%
GAATCCAACAAATTAGGAAA+CGG + chr7_4:55531496-55531515 None:intergenic 30.0%
TGCAATGAATCCAACAAATT+AGG + chr7_4:55531502-55531521 None:intergenic 30.0%
AATTATGCTTCTCTGTTTAC+AGG - chr7_4:55531814-55531833 Msa1164020:intron 30.0%
! CCTATTTTGTATCCTAACTT+CGG - chr7_4:55531950-55531969 Msa1164020:intron 30.0%
TTTATTCTTGATTTCCCCAA+GGG + chr7_4:55531984-55532003 None:intergenic 30.0%
! TTTTATTCTTGATTTCCCCA+AGG + chr7_4:55531985-55532004 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr7_4:55532135-55532154 None:intergenic 30.0%
AAATTATCTCCACAAGATCA+TGG + chr7_4:55532314-55532333 None:intergenic 30.0%
TGATCTTGTGGAGATAATTT+AGG - chr7_4:55532314-55532333 Msa1164020:intron 30.0%
GATCTTGTGGAGATAATTTA+GGG - chr7_4:55532315-55532334 Msa1164020:intron 30.0%
ATCTTGTGGAGATAATTTAG+GGG - chr7_4:55532316-55532335 Msa1164020:intron 30.0%
! AATTAGTTTAAGAGGGTATG+CGG + chr7_4:55532369-55532388 None:intergenic 30.0%
GCAAAGAATACTGAAAATGT+TGG - chr7_4:55532803-55532822 Msa1164020:intron 30.0%
!! TTTGCAAGTTTTAATGACCT+TGG - chr7_4:55533013-55533032 Msa1164020:CDS 30.0%
! TTTTGATGTTATTACAGCTC+GGG - chr7_4:55533038-55533057 Msa1164020:CDS 30.0%
!!! TAAAAGATTCGTTGGTTTTG+TGG - chr7_4:55533516-55533535 Msa1164020:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAACCTT+TGG + chr7_4:55529929-55529948 None:intergenic 35.0%
AGAGAATAGATTACCTCTAG+TGG + chr7_4:55530062-55530081 None:intergenic 35.0%
!! ATAGGTATTGAGAGGGAAAT+TGG - chr7_4:55530140-55530159 Msa1164020:three_prime_UTR 35.0%
ATTAAGAGAACTGCTAAGAC+AGG - chr7_4:55530298-55530317 Msa1164020:intron 35.0%
CAACAGATTGCTAATCTTCA+GGG - chr7_4:55530527-55530546 Msa1164020:CDS 35.0%
!! TTGTTGACTTGTGTTTGAGA+TGG - chr7_4:55530638-55530657 Msa1164020:intron 35.0%
! ATTACACCCCAATCAAGTTT+TGG + chr7_4:55531028-55531047 None:intergenic 35.0%
!!! CTTTTTTGGAGGTGATATAG+AGG - chr7_4:55531097-55531116 Msa1164020:intron 35.0%
CATGTTAGTCCATAAACTAC+AGG + chr7_4:55531879-55531898 None:intergenic 35.0%
CCGAAGTTAGGATACAAAAT+AGG + chr7_4:55531953-55531972 None:intergenic 35.0%
CTTAACTAACTTCACCTAGT+AGG + chr7_4:55532029-55532048 None:intergenic 35.0%
CTACTAGGTGAAGTTAGTTA+AGG - chr7_4:55532027-55532046 Msa1164020:intron 35.0%
GAAGTTAGTTAAGGCCTATT+TGG - chr7_4:55532036-55532055 Msa1164020:intron 35.0%
TAGTTAAGGCCTATTTGGAT+TGG - chr7_4:55532041-55532060 Msa1164020:intron 35.0%
TAAGAGCTTGTGAGATTGTT+TGG - chr7_4:55532078-55532097 Msa1164020:intron 35.0%
AAGAGCTTGTGAGATTGTTT+GGG - chr7_4:55532079-55532098 Msa1164020:intron 35.0%
! CTTATTTCTTAAAGCTCTCC+AGG - chr7_4:55532149-55532168 Msa1164020:intron 35.0%
TCTGATTTCTTAAGCTATCC+TGG + chr7_4:55532170-55532189 None:intergenic 35.0%
!! TGCATAAGCTATTTCTGTGA+CGG + chr7_4:55532202-55532221 None:intergenic 35.0%
! ATTAGTTTAAGAGGGTATGC+GGG + chr7_4:55532368-55532387 None:intergenic 35.0%
ACATTATCAAGAGAAACGTG+TGG - chr7_4:55532396-55532415 Msa1164020:intron 35.0%
GTCTTCAGAAGGAAACATAA+TGG + chr7_4:55532430-55532449 None:intergenic 35.0%
TGAAGTTCAGAAGTAGTTTC+AGG + chr7_4:55532452-55532471 None:intergenic 35.0%
CAGACTGTCATGATTTCTTA+TGG - chr7_4:55532470-55532489 Msa1164020:intron 35.0%
GTAAGATGGGAATGAATTCA+AGG - chr7_4:55532543-55532562 Msa1164020:intron 35.0%
! ATATCATCTGACAGTGCTTT+TGG - chr7_4:55532712-55532731 Msa1164020:intron 35.0%
AGAATACTGAAAATGTTGGC+AGG - chr7_4:55532807-55532826 Msa1164020:intron 35.0%
CTTGTAATTCGCGAAGAATT+TGG - chr7_4:55532945-55532964 Msa1164020:intron 35.0%
TATATGGTTCACGATCTCAA+AGG - chr7_4:55533121-55533140 Msa1164020:intron 35.0%
ACTTGGCACTCATTTACAAA+TGG + chr7_4:55533309-55533328 None:intergenic 35.0%
TCAATAGGTAAGAGCAGAAA+TGG + chr7_4:55533332-55533351 None:intergenic 35.0%
TGCTCTTACCTATTGATGTT+TGG - chr7_4:55533336-55533355 Msa1164020:intron 35.0%
CTTACCTATTGATGTTTGGT+AGG - chr7_4:55533340-55533359 Msa1164020:intron 35.0%
TGTTTGGTAGGAGTGAAAAT+AGG - chr7_4:55533352-55533371 Msa1164020:intron 35.0%
TAGTAGATTGAACATAGTGC+AGG - chr7_4:55533389-55533408 Msa1164020:intron 35.0%
!!! CCTGGTTTTAAGTTCAATCA+TGG + chr7_4:55533453-55533472 None:intergenic 35.0%
CCATGATTGAACTTAAAACC+AGG - chr7_4:55533450-55533469 Msa1164020:five_prime_UTR 35.0%
GAACTTAAAACCAGGATTTC+TGG - chr7_4:55533458-55533477 Msa1164020:five_prime_UTR 35.0%
! CGGAACTTTAAAAGATTCGT+TGG - chr7_4:55533508-55533527 Msa1164020:five_prime_UTR 35.0%
ATGAACAGTTCACGAGTATA+TGG + chr7_4:55533560-55533579 None:intergenic 35.0%
CTGATGATACAAGGTTTAGA+TGG + chr7_4:55533588-55533607 None:intergenic 35.0%
AGAAGAAGAAGAACCTTTGG+CGG + chr7_4:55529926-55529945 None:intergenic 40.0%
GCAACAGATTGCTAATCTTC+AGG - chr7_4:55530526-55530545 Msa1164020:CDS 40.0%
TTGCTAATCTTCAGGGTAGT+CGG - chr7_4:55530534-55530553 Msa1164020:CDS 40.0%
CAAAGGGTTCAAGTGAACAA+TGG + chr7_4:55530595-55530614 None:intergenic 40.0%
GGCAATGTCAGCTATGAATA+AGG - chr7_4:55530763-55530782 Msa1164020:intron 40.0%
TACACCAGGTTTCCAAGAAA+GGG - chr7_4:55530853-55530872 Msa1164020:intron 40.0%
!! CAAGCTGAGAAGTTGTTTCT+AGG - chr7_4:55530913-55530932 Msa1164020:intron 40.0%
GATTTGAATCTGTGACATCC+AGG - chr7_4:55530935-55530954 Msa1164020:intron 40.0%
TCATGAACTAACATGAGAGC+AGG + chr7_4:55530996-55531015 None:intergenic 40.0%
TTTGTGCGAGTTTGATGGAA+TGG - chr7_4:55531196-55531215 Msa1164020:intron 40.0%
AGAACTGCTATTATCAAGGC+TGG + chr7_4:55531399-55531418 None:intergenic 40.0%
GTTGGATTCATTGCAGCAAA+TGG - chr7_4:55531507-55531526 Msa1164020:intron 40.0%
!! ATAACTTTGGCTTGCTTTGC+TGG + chr7_4:55531535-55531554 None:intergenic 40.0%
AAAGCAAGCCAAAGTTATGC+AGG - chr7_4:55531537-55531556 Msa1164020:intron 40.0%
CTGGAATTCCTGCATAACTT+TGG + chr7_4:55531548-55531567 None:intergenic 40.0%
GCAGGAATTCCAGAAACAAT+CGG - chr7_4:55531555-55531574 Msa1164020:intron 40.0%
AGATGTCATAGATGATGCCT+TGG - chr7_4:55531702-55531721 Msa1164020:intron 40.0%
TTCAGCTTCATCATCATCCA+AGG + chr7_4:55531722-55531741 None:intergenic 40.0%
ACCTTGTGTTACAATCCTTG+AGG - chr7_4:55531902-55531921 Msa1164020:intron 40.0%
CCTTGTGTTACAATCCTTGA+GGG - chr7_4:55531903-55531922 Msa1164020:intron 40.0%
CTACCAAATCGTATCCTACT+AGG - chr7_4:55532012-55532031 Msa1164020:intron 40.0%
TCACCTAGTAGGATACGATT+TGG + chr7_4:55532018-55532037 None:intergenic 40.0%
! AGTAGTTTCAGGTCTTCAGA+AGG + chr7_4:55532441-55532460 None:intergenic 40.0%
! GGCTTTGTCACTTAGTTACA+AGG - chr7_4:55532491-55532510 Msa1164020:intron 40.0%
! TCACTTACCCTTTTCTTGAC+AGG - chr7_4:55532622-55532641 Msa1164020:intron 40.0%
TCAAGCACCTGTCAAGAAAA+GGG + chr7_4:55532632-55532651 None:intergenic 40.0%
ATCAAGCACCTGTCAAGAAA+AGG + chr7_4:55532633-55532652 None:intergenic 40.0%
TGACAGGTGCTTGATGAAAT+CGG - chr7_4:55532638-55532657 Msa1164020:intron 40.0%
AAAGCTTATTCCTACCTGTG+AGG + chr7_4:55532675-55532694 None:intergenic 40.0%
AGTTATCTTCAGCTCCCAAA+GGG - chr7_4:55532771-55532790 Msa1164020:CDS 40.0%
AGGATAGGGAAAGAGTTACA+CGG + chr7_4:55532839-55532858 None:intergenic 40.0%
CACTCCTACCAAACATCAAT+AGG + chr7_4:55533347-55533366 None:intergenic 40.0%
TAGGAGTGAAAATAGGCAAG+AGG - chr7_4:55533359-55533378 Msa1164020:intron 40.0%
GAAAATAGGCAAGAGGAGAA+CGG - chr7_4:55533366-55533385 Msa1164020:intron 40.0%
!!! AACCAGGATTTCTGGTGTTT+TGG - chr7_4:55533466-55533485 Msa1164020:five_prime_UTR 40.0%
TACCAAAACACCAGAAATCC+TGG + chr7_4:55533471-55533490 None:intergenic 40.0%
GTATTCCACTAGAACTCACA+CGG - chr7_4:55533488-55533507 Msa1164020:five_prime_UTR 40.0%
!!! AGATTCGTTGGTTTTGTGGA+AGG - chr7_4:55533520-55533539 Msa1164020:five_prime_UTR 40.0%
!!! TTGGTTTTGTGGAAGGTGAA+TGG - chr7_4:55533527-55533546 Msa1164020:five_prime_UTR 40.0%
TGCGGTATTGTCAACAACGA+AGG + chr7_4:55529876-55529895 None:intergenic 45.0%
TGGTGAAGATGTTCATCGTG+CGG + chr7_4:55529894-55529913 None:intergenic 45.0%
GAAATGACTAACGCCACTAG+AGG - chr7_4:55530046-55530065 Msa1164020:three_prime_UTR 45.0%
AACTGCTAAGACAGGAAACG+AGG - chr7_4:55530306-55530325 Msa1164020:intron 45.0%
TACTAGCTCGTCAGCTGATA+AGG - chr7_4:55530498-55530517 Msa1164020:intron 45.0%
TGCTAATCTTCAGGGTAGTC+GGG - chr7_4:55530535-55530554 Msa1164020:CDS 45.0%
GCACATTCTTCTGTTGCTGT+TGG - chr7_4:55530722-55530741 Msa1164020:intron 45.0%
! TCTGTTGCTGTTGGCATGAA+AGG - chr7_4:55530731-55530750 Msa1164020:intron 45.0%
GTACACCAGGTTTCCAAGAA+AGG - chr7_4:55530852-55530871 Msa1164020:intron 45.0%
ACACCAGGTTTCCAAGAAAG+GGG - chr7_4:55530854-55530873 Msa1164020:intron 45.0%
CTGGGGAGGGTAAATCTATA+TGG - chr7_4:55530879-55530898 Msa1164020:intron 45.0%
GCAAGTTTGTGCGAGTTTGA+TGG - chr7_4:55531191-55531210 Msa1164020:intron 45.0%
! GGATGATGATGAAGCTGAAG+AGG - chr7_4:55531723-55531742 Msa1164020:intron 45.0%
CCCTCAAGGATTGTAACACA+AGG + chr7_4:55531906-55531925 None:intergenic 45.0%
! CTAAGCATTGCTAACCCTCA+AGG + chr7_4:55531920-55531939 None:intergenic 45.0%
!! AGGGTGTTACTACCGAAGTT+AGG + chr7_4:55531965-55531984 None:intergenic 45.0%
AACTTCGGTAGTAACACCCT+TGG - chr7_4:55531965-55531984 Msa1164020:intron 45.0%
ACTTCGGTAGTAACACCCTT+GGG - chr7_4:55531966-55531985 Msa1164020:intron 45.0%
AGTTACATGGGTCATGCCAT+TGG - chr7_4:55532283-55532302 Msa1164020:intron 45.0%
GTTACATGGGTCATGCCATT+GGG - chr7_4:55532284-55532303 Msa1164020:intron 45.0%
CAAGATCATGGATAGCCCAA+TGG + chr7_4:55532302-55532321 None:intergenic 45.0%
TTGGGCTATCCATGATCTTG+TGG - chr7_4:55532302-55532321 Msa1164020:intron 45.0%
CAGTTATCTTCAGCTCCCAA+AGG - chr7_4:55532770-55532789 Msa1164020:CDS 45.0%
TTTGCTGCGATTCTCCCTTT+GGG + chr7_4:55532788-55532807 None:intergenic 45.0%
!! TGATGACCTTGAGAAGCGTT+TGG - chr7_4:55533064-55533083 Msa1164020:intron 45.0%
CTGTAGTTGAGCCATAGTTG+TGG - chr7_4:55533263-55533282 Msa1164020:intron 45.0%
! GGTAAGAGCAGAAATGGACT+TGG + chr7_4:55533326-55533345 None:intergenic 45.0%
! AAGTTCCGTGTGAGTTCTAG+TGG + chr7_4:55533496-55533515 None:intergenic 45.0%
!! GTTAAATTAAATATATTAAA+AGG + chr7_4:55530203-55530222 None:intergenic 5.0%
GAAGAAGAACCTTTGGCGGT+GGG + chr7_4:55529922-55529941 None:intergenic 50.0%
AGAAGAAGAACCTTTGGCGG+TGG + chr7_4:55529923-55529942 None:intergenic 50.0%
CTCGTCAGCTGATAAGGCTT+AGG - chr7_4:55530504-55530523 Msa1164020:intron 50.0%
! GGTTGCTTGTCATTTCGTGC+AGG - chr7_4:55530691-55530710 Msa1164020:intron 50.0%
!! TGGCATGAAAGGCGCTACTA+AGG - chr7_4:55530742-55530761 Msa1164020:intron 50.0%
AAAGGGTGGTCTAGTACACC+AGG - chr7_4:55530839-55530858 Msa1164020:intron 50.0%
CACCAGGTTTCCAAGAAAGG+GGG - chr7_4:55530855-55530874 Msa1164020:intron 50.0%
GTTTCCAAGAAAGGGGGTCT+GGG - chr7_4:55530861-55530880 Msa1164020:intron 50.0%
TTTCCAAGAAAGGGGGTCTG+GGG - chr7_4:55530862-55530881 Msa1164020:intron 50.0%
TGTGACATCCAGGTCACACA+AGG - chr7_4:55530945-55530964 Msa1164020:intron 50.0%
ACTAACATGAGAGCAGGCCT+TGG + chr7_4:55530990-55531009 None:intergenic 50.0%
TGTGTGTGCATGTGACAGGA+GGG + chr7_4:55531318-55531337 None:intergenic 50.0%
TGTGTGTGTGTGCATGTGAC+AGG + chr7_4:55531322-55531341 None:intergenic 50.0%
CACACACACACACACACACA+CGG - chr7_4:55531330-55531349 Msa1164020:intron 50.0%
ACACACACACACACACGGAA+AGG - chr7_4:55531335-55531354 Msa1164020:intron 50.0%
CACACACACACACACGGAAA+GGG - chr7_4:55531336-55531355 Msa1164020:intron 50.0%
!! CCATCTGTGCCGATTGTTTC+TGG + chr7_4:55531567-55531586 None:intergenic 50.0%
CCAGAAACAATCGGCACAGA+TGG - chr7_4:55531564-55531583 Msa1164020:intron 50.0%
CTTCGGTAGTAACACCCTTG+GGG - chr7_4:55531967-55531986 Msa1164020:intron 50.0%
GTCGATATTGCCTCACAGGT+AGG - chr7_4:55532662-55532681 Msa1164020:intron 50.0%
CTTTGCTGCGATTCTCCCTT+TGG + chr7_4:55532789-55532808 None:intergenic 50.0%
!! TGACCTTGAGAAGCGTTTGG+CGG - chr7_4:55533067-55533086 Msa1164020:intron 50.0%
ACCAAGAAACCCACCGCCAA+AGG - chr7_4:55529910-55529929 Msa1164020:three_prime_UTR 55.0%
! ACCTTTGGCGGTGGGTTTCT+TGG + chr7_4:55529914-55529933 None:intergenic 55.0%
AGGCATAGCAACTCACACGC+AGG - chr7_4:55530568-55530587 Msa1164020:intron 55.0%
GACCCCCTTTCTTGGAAACC+TGG + chr7_4:55530860-55530879 None:intergenic 55.0%
GGTTTCCAAGAAAGGGGGTC+TGG - chr7_4:55530860-55530879 Msa1164020:intron 55.0%
GCAACCTTGCGATTGTGCCA+AGG - chr7_4:55530970-55530989 Msa1164020:intron 55.0%
GTGTGTGTGCATGTGACAGG+AGG + chr7_4:55531319-55531338 None:intergenic 55.0%
!! CGGTGTCGATATTGCCTCAC+AGG - chr7_4:55532658-55532677 Msa1164020:intron 55.0%
CTCTCACGAAGAGCCTCTGC+AGG + chr7_4:55530019-55530038 None:intergenic 60.0%
GGTAGTCGGGCTCAGATGAG+AGG - chr7_4:55530548-55530567 Msa1164020:intron 60.0%
CAAGAAAGGGGGTCTGGGGA+GGG - chr7_4:55530866-55530885 Msa1164020:intron 60.0%
GGTTGCTGCCTTGTGTGACC+TGG + chr7_4:55530956-55530975 None:intergenic 60.0%
CAGGCCTTGGCACAATCGCA+AGG + chr7_4:55530977-55530996 None:intergenic 60.0%
GAGCCGCCAAACGCTTCTCA+AGG + chr7_4:55533073-55533092 None:intergenic 60.0%
CCTCCCCAGACCCCCTTTCT+TGG + chr7_4:55530868-55530887 None:intergenic 65.0%
CCAAGAAAGGGGGTCTGGGG+AGG - chr7_4:55530865-55530884 Msa1164020:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55529725 55533613 55529725 ID=Msa1164020;Name=Msa1164020
chr7_4 mRNA 55529725 55533613 55529725 ID=Msa1164020-mRNA-1;Parent=Msa1164020;Name=Msa1164020-mRNA-1;_AED=0.12;_eAED=0.12;_QI=173|0.9|0.90|1|0.9|0.90|11|507|191
chr7_4 exon 55529725 55530283 55529725 ID=Msa1164020-mRNA-1:exon:16269;Parent=Msa1164020-mRNA-1
chr7_4 exon 55530510 55530565 55530510 ID=Msa1164020-mRNA-1:exon:16268;Parent=Msa1164020-mRNA-1
chr7_4 exon 55530659 55530694 55530659 ID=Msa1164020-mRNA-1:exon:16267;Parent=Msa1164020-mRNA-1
chr7_4 exon 55531570 55531650 55531570 ID=Msa1164020-mRNA-1:exon:16266;Parent=Msa1164020-mRNA-1
chr7_4 exon 55531744 55531815 55531744 ID=Msa1164020-mRNA-1:exon:16265;Parent=Msa1164020-mRNA-1
chr7_4 exon 55532554 55532625 55532554 ID=Msa1164020-mRNA-1:exon:16264;Parent=Msa1164020-mRNA-1
chr7_4 exon 55532749 55532790 55532749 ID=Msa1164020-mRNA-1:exon:16263;Parent=Msa1164020-mRNA-1
chr7_4 exon 55533011 55533061 55533011 ID=Msa1164020-mRNA-1:exon:16262;Parent=Msa1164020-mRNA-1
chr7_4 exon 55533160 55533194 55533160 ID=Msa1164020-mRNA-1:exon:16261;Parent=Msa1164020-mRNA-1
chr7_4 exon 55533271 55533315 55533271 ID=Msa1164020-mRNA-1:exon:16260;Parent=Msa1164020-mRNA-1
chr7_4 exon 55533407 55533613 55533407 ID=Msa1164020-mRNA-1:exon:16259;Parent=Msa1164020-mRNA-1
chr7_4 five_prime_UTR 55533441 55533613 55533441 ID=Msa1164020-mRNA-1:five_prime_utr;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55533407 55533440 55533407 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55533271 55533315 55533271 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55533160 55533194 55533160 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55533011 55533061 55533011 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55532749 55532790 55532749 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55532554 55532625 55532554 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55531744 55531815 55531744 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55531570 55531650 55531570 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55530659 55530694 55530659 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55530510 55530565 55530510 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 CDS 55530232 55530283 55530232 ID=Msa1164020-mRNA-1:cds;Parent=Msa1164020-mRNA-1
chr7_4 three_prime_UTR 55529725 55530231 55529725 ID=Msa1164020-mRNA-1:three_prime_utr;Parent=Msa1164020-mRNA-1
Gene Sequence

>Msa1164020

ATGAACATCTTCACCAAGAAACCCACCGCCAAAGAGGCTCTTCGTGAGAGTAAACGTGAAATGACTAACGCCACTAGAGGTATTGAGAGGGAAATTGGATCATTACAATTGGAAGAAAAGAAATTAGTTGCTGAGATTAAGAGAACTGCTAAGACAGGAAACGAGGGTAGTCGGGCTCAGATGAGAGGCATAGCAACTCACACGCAGGCAATGCATGCACATTCTTCTGTTGCTGTTGGCATGAAAGGCGCTACTAAGGCAATGTCAGCTATGAATAAGCAAATGGAACCAGCAAAGCAAGCCAAAGTTATGCAGGAATTCCAGAAACAATCGGCACAGATGGATATGACTACTGAAATGATGTCAGATGTCATAGATGATGCCTTGGATGATGATGAAGCTGAAGAGGAAACTGAAGAGCTTACAAATCAAGTGCTTGATGAAATCGGTGTCGATATTGCCTCACAGTTATCTTCAGCTCCCAAAGGGAGAATCGCAGCAAAGAATACTGAAAATGTTGGCAGCTCGGGCGTTGATGACCTTGAGAAGCGTTTGGCGGCTCTAAGAAACCCATAA

Protein sequence

>Msa1164020

MNIFTKKPTAKEALRESKREMTNATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEGSRAQMRGIATHTQAMHAHSSVAVGMKGATKAMSAMNKQMEPAKQAKVMQEFQKQSAQMDMTTEMMSDVIDDALDDDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIAAKNTENVGSSGVDDLEKRLAALRNP*