Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735460 | XP_024639172.1 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 2.87e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735460 | sp|Q54UU1|TPPC4_DICDI | 55.469 | 128 | 56 | 1 | 3 | 129 | 2 | 129 | 3.89e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735460 | A0A072UGD7 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 1.37e-100 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082280 | Msa0735460 | 0.813211 | 2.871184e-51 | -8.615850e-47 |
| Msa0682780 | Msa0735460 | 0.827229 | 1.755488e-54 | -8.615850e-47 |
| Msa0735460 | Msa1126510 | 0.805710 | 1.170694e-49 | -8.615850e-47 |
| Msa0735460 | Msa1126770 | 0.814952 | 1.185486e-51 | -8.615850e-47 |
| Msa0735460 | Msa1166860 | 0.805958 | 1.038251e-49 | -8.615850e-47 |
| Msa0735460 | Msa1227690 | 0.806222 | 9.136390e-50 | -8.615850e-47 |
| Msa0735460 | Msa1234980 | 0.805763 | 1.140788e-49 | -8.615850e-47 |
| Msa0735460 | Msa1307950 | 0.805897 | 1.069424e-49 | -8.615850e-47 |
| Msa0735460 | Msa1310690 | 0.826068 | 3.322060e-54 | -8.615850e-47 |
| Msa0735460 | Msa1370860 | 0.814060 | 1.867396e-51 | -8.615850e-47 |
| Msa0735460 | Msa1442850 | 0.818809 | 1.615201e-52 | -8.615850e-47 |
| Msa0735460 | Msa1450280 | 0.803885 | 2.816163e-49 | -8.615850e-47 |
| Msa0735460 | Msa1465080 | 0.810265 | 1.256251e-50 | -8.615850e-47 |
| Msa0174770 | Msa0735460 | 0.815617 | 8.435903e-52 | -8.615850e-47 |
| Msa0199690 | Msa0735460 | 0.819896 | 9.127892e-53 | -8.615850e-47 |
| Msa0402330 | Msa0735460 | 0.801382 | 9.242862e-49 | -8.615850e-47 |
| Msa0481480 | Msa0735460 | 0.806589 | 7.642441e-50 | -8.615850e-47 |
| Msa0280430 | Msa0735460 | 0.801940 | 7.101398e-49 | -8.615850e-47 |
| Msa0304590 | Msa0735460 | 0.810489 | 1.123801e-50 | -8.615850e-47 |
| Msa0304660 | Msa0735460 | 0.804272 | 2.339362e-49 | -8.615850e-47 |
| Msa0331700 | Msa0735460 | 0.806243 | 9.042005e-50 | -8.615850e-47 |
| Msa0508590 | Msa0735460 | 0.802978 | 4.339733e-49 | -8.615850e-47 |
| Msa0508630 | Msa0735460 | 0.811513 | 6.743168e-51 | -8.615850e-47 |
| Msa0581070 | Msa0735460 | 0.814254 | 1.691837e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735460 | MtrunA17_Chr5g0432621 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 2.64e-104 | 295 |
| Msa0735460 | MtrunA17_Chr8g0390661 | 92.105 | 114 | 9 | 0 | 28 | 141 | 1 | 114 | 4.14e-79 | 229 |
| Msa0735460 | MtrunA17_Chr8g0385351 | 29.577 | 142 | 83 | 3 | 7 | 132 | 28 | 168 | 6.70e-15 | 67.8 |
| Msa0735460 | MtrunA17_Chr4g0024741 | 29.577 | 142 | 83 | 3 | 7 | 132 | 26 | 166 | 7.17e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735460 | AT5G02280.1 | 87.943 | 141 | 17 | 0 | 1 | 141 | 1 | 141 | 6.70e-94 | 268 |
| Msa0735460 | AT1G51160.1 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
| Msa0735460 | AT1G51160.3 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
| Msa0735460 | AT1G51160.2 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
Find 42 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAGTTATCACCTGTTTC+AGG | 0.153521 | 5_1:-50784457 | Msa0735460:CDS |
| AGATTCTGGCAAAAGGCTTT+TGG | 0.277713 | 5_1:-50785283 | Msa0735460:five_prime_UTR |
| TCACCTGTTTCAGGTTGTTC+AGG | 0.323200 | 5_1:-50784448 | Msa0735460:CDS |
| CAGGGAAGCCGATTGAAGTT+TGG | 0.328958 | 5_1:-50785958 | Msa0735460:five_prime_UTR |
| CATTGCTTCCAATCGCTAAC+AGG | 0.330687 | 5_1:-50784391 | Msa0735460:intron |
| ATTAATCACTGTCTTGTAAG+AGG | 0.371354 | 5_1:-50783264 | Msa0735460:three_prime_UTR |
| CTTTCTATTTGTTGAGTGCC+AGG | 0.384294 | 5_1:+50783458 | None:intergenic |
| CGTATAACCAAAGTTCTCTT+GGG | 0.407659 | 5_1:-50786027 | None:intergenic |
| TGGTGGATTGATCTACTATA+AGG | 0.415123 | 5_1:-50785221 | Msa0735460:intron |
| AAAGGATCGTGTTGCATTGT+TGG | 0.417233 | 5_1:-50783318 | Msa0735460:CDS |
| CCTTACGAGTGGCTAGCTTA+TGG | 0.418783 | 5_1:-50784501 | Msa0735460:CDS |
| ATACGTATATGAATTGTATA+CGG | 0.424502 | 5_1:-50783426 | Msa0735460:CDS |
| CCGTATAACCAAAGTTCTCT+TGG | 0.425343 | 5_1:-50786028 | None:intergenic |
| AAGGATCGTGTTGCATTGTT+GGG | 0.433648 | 5_1:-50783317 | Msa0735460:CDS |
| TTCTTTGCAGTGTGTGAGCC+TGG | 0.438457 | 5_1:-50783476 | Msa0735460:CDS |
| AACTTTCAGATTCTGGCAAA+AGG | 0.438967 | 5_1:-50785290 | Msa0735460:intron |
| GGCATCTCTATCTCATAGAA+AGG | 0.445455 | 5_1:+50783386 | None:intergenic |
| ATTCCTGAACAACCTGAAAC+AGG | 0.450702 | 5_1:+50784445 | None:intergenic |
| TCTAACTCAGTCAGTACAAA+AGG | 0.461735 | 5_1:-50783336 | Msa0735460:CDS |
| TCAAAGAGCTCACATCGAAT+AGG | 0.467271 | 5_1:+50783365 | None:intergenic |
| CTTTACATCATCAATAAGTC+TGG | 0.473288 | 5_1:-50785241 | Msa0735460:CDS |
| TGATTAATAAAACTTGGCCT+TGG | 0.480432 | 5_1:+50783279 | None:intergenic |
| ATTACCAGCCAAACTTCAAT+CGG | 0.485709 | 5_1:+50785950 | None:intergenic |
| ATTCAGGATTATGGGTCGGC+TGG | 0.489577 | 5_1:-50784544 | Msa0735460:intron |
| TCGAAACGAGATTCATTGAC+AGG | 0.495998 | 5_1:-50785977 | Msa0735460:five_prime_UTR |
| AAGTAATACCTGTTAGCGAT+TGG | 0.512163 | 5_1:+50784383 | None:intergenic |
| GAAGATCAAATGTGTCAGCT+TGG | 0.530412 | 5_1:+50784413 | None:intergenic |
| TTATGGGTCGGCTGGACGAA+TGG | 0.537132 | 5_1:-50784536 | Msa0735460:CDS |
| AGACAGTGATTAATAAAACT+TGG | 0.541726 | 5_1:+50783273 | None:intergenic |
| TGATATTCAGGATTATGGGT+CGG | 0.544902 | 5_1:-50784548 | Msa0735460:intron |
| GAAGCCGATTGAAGTTTGGC+TGG | 0.551335 | 5_1:-50785954 | Msa0735460:intron |
| GCATCTCTATCTCATAGAAA+GGG | 0.553734 | 5_1:+50783387 | None:intergenic |
| TACATCATCAATAAGTCTGG+TGG | 0.561761 | 5_1:-50785238 | Msa0735460:CDS |
| CCATAAGCTAGCCACTCGTA+AGG | 0.587798 | 5_1:+50784501 | None:intergenic |
| AGGTGATAACTGCTGAGAGA+TGG | 0.596514 | 5_1:+50784465 | None:intergenic |
| CGAAACGAGATTCATTGACA+GGG | 0.602574 | 5_1:-50785976 | Msa0735460:five_prime_UTR |
| GGTTATTACAACGCAACAAG+AGG | 0.613437 | 5_1:-50786004 | Msa0735460:five_prime_UTR |
| GTATAACCAAAGTTCTCTTG+GGG | 0.617238 | 5_1:-50786026 | None:intergenic |
| GGTCAATAAGTTGCTGACCA+AGG | 0.653391 | 5_1:-50783296 | Msa0735460:exon |
| TACAAATGATACCTTACGAG+TGG | 0.655543 | 5_1:-50784512 | Msa0735460:CDS |
| TATAACCAAAGTTCTCTTGG+GGG | 0.668616 | 5_1:-50786025 | None:intergenic |
| TGTGTGCAAATACATAGACC+AGG | 0.705051 | 5_1:+50783218 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAACTTAATTAAAATTC+TGG | + | chr5_1:50783874-50783893 | None:intergenic | 15.0% |
| !!! | AATTTTTTTAGATTGAATCA+TGG | + | chr5_1:50784142-50784161 | None:intergenic | 15.0% |
| !! | ACTTATATACTAAAAAACAA+CGG | + | chr5_1:50784186-50784205 | None:intergenic | 15.0% |
| !!! | TATATAAGTTTTGTTAAGTT+AGG | - | chr5_1:50784197-50784216 | Msa0735460:intron | 15.0% |
| !! | TAATGTTCAATACAAAATTT+AGG | + | chr5_1:50784330-50784349 | None:intergenic | 15.0% |
| !! | ATTTGAAAAAAATTCTACTA+AGG | - | chr5_1:50784429-50784448 | Msa0735460:CDS | 15.0% |
| !! | TAATATTAATCAAGATTTCA+AGG | + | chr5_1:50784469-50784488 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTTGAAAGC+TGG | - | chr5_1:50785031-50785050 | Msa0735460:intron | 15.0% |
| !!! | TATAATTTTTTTTGAAAGCT+GGG | - | chr5_1:50785032-50785051 | Msa0735460:intron | 15.0% |
| !!! | AGAAAATTATTTATTTCTCT+TGG | + | chr5_1:50785341-50785360 | None:intergenic | 15.0% |
| !! | AAAACCTAAAATTTAAACAA+GGG | + | chr5_1:50785649-50785668 | None:intergenic | 15.0% |
| !! | ATGTAGTTAATTGCAAAATA+GGG | + | chr5_1:50783697-50783716 | None:intergenic | 20.0% |
| !! | AATGTAGTTAATTGCAAAAT+AGG | + | chr5_1:50783698-50783717 | None:intergenic | 20.0% |
| !!! | TTTGCAATTAACTACATTTT+TGG | - | chr5_1:50783700-50783719 | Msa0735460:intron | 20.0% |
| !!! | TTGCAATTAACTACATTTTT+GGG | - | chr5_1:50783701-50783720 | Msa0735460:intron | 20.0% |
| !! | AGATATATTCTACTCTAAAT+TGG | - | chr5_1:50784044-50784063 | Msa0735460:intron | 20.0% |
| !! | CTTATATACTAAAAAACAAC+GGG | + | chr5_1:50784185-50784204 | None:intergenic | 20.0% |
| !! | TATACTGAAATCTCAAAAAA+AGG | + | chr5_1:50784225-50784244 | None:intergenic | 20.0% |
| !! | TGAATCATAGTATGATAATT+AGG | - | chr5_1:50784259-50784278 | Msa0735460:intron | 20.0% |
| !!! | TTTTTTGTATTAGATGATAC+TGG | + | chr5_1:50784540-50784559 | None:intergenic | 20.0% |
| !!! | TGTTAAACTTTTTGATATTC+AGG | - | chr5_1:50784630-50784649 | Msa0735460:intron | 20.0% |
| !!! | TTTTTGATATTCAGGATTAT+GGG | - | chr5_1:50784638-50784657 | Msa0735460:intron | 20.0% |
| !!! | GTTTTATTTGATTATGTACT+AGG | - | chr5_1:50785077-50785096 | Msa0735460:intron | 20.0% |
| !! | TTGATAAGAGTTTATAAAGA+CGG | - | chr5_1:50785258-50785277 | Msa0735460:CDS | 20.0% |
| !!! | TTCTATGTACTGTTATTTAT+TGG | - | chr5_1:50785357-50785376 | Msa0735460:intron | 20.0% |
| !!! | ATTTTTTGAATTCCTTTTTG+AGG | - | chr5_1:50785407-50785426 | Msa0735460:intron | 20.0% |
| !!! | TAAAATTTAAACAAGGGTAT+GGG | + | chr5_1:50785643-50785662 | None:intergenic | 20.0% |
| !! | CAAAACCTAAAATTTAAACA+AGG | + | chr5_1:50785650-50785669 | None:intergenic | 20.0% |
| !! | ATACGTATATGAATTGTATA+CGG | - | chr5_1:50785764-50785783 | Msa0735460:intron | 20.0% |
| ! | TGAACGAAATTGAAATTGTT+AGG | + | chr5_1:50783283-50783302 | None:intergenic | 25.0% |
| ! | TTGTTTAAACTTTCAGATTC+TGG | - | chr5_1:50783893-50783912 | Msa0735460:intron | 25.0% |
| !! | CTTTTTGATATTCAGGATTA+TGG | - | chr5_1:50784637-50784656 | Msa0735460:intron | 25.0% |
| ! | TATTTGATTATGTACTAGGA+AGG | - | chr5_1:50785081-50785100 | Msa0735460:intron | 25.0% |
| ! | TGATAAGAGTTTATAAAGAC+GGG | - | chr5_1:50785259-50785278 | Msa0735460:CDS | 25.0% |
| !! | TTTCTCTTGGATTTTCTATT+GGG | + | chr5_1:50785328-50785347 | None:intergenic | 25.0% |
| !! | ATTTCTCTTGGATTTTCTAT+TGG | + | chr5_1:50785329-50785348 | None:intergenic | 25.0% |
| ! | AAAAATTTATACTGAGCAGT+GGG | + | chr5_1:50785393-50785412 | None:intergenic | 25.0% |
| ! | AAAAAATTTATACTGAGCAG+TGG | + | chr5_1:50785394-50785413 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTGCCTCAAAA+AGG | + | chr5_1:50785422-50785441 | None:intergenic | 25.0% |
| !! | CTTGATAGTTTAGATATTTC+TGG | - | chr5_1:50785523-50785542 | Msa0735460:intron | 25.0% |
| !! | TGTATTTGGTTTAATATCTG+TGG | - | chr5_1:50785587-50785606 | Msa0735460:intron | 25.0% |
| ! | CTAAAATTTAAACAAGGGTA+TGG | + | chr5_1:50785644-50785663 | None:intergenic | 25.0% |
| !!! | CATACCCTTGTTTAAATTTT+AGG | - | chr5_1:50785642-50785661 | Msa0735460:intron | 25.0% |
| !!! | TTAGGTTTTGATATAACATC+AGG | - | chr5_1:50785660-50785679 | Msa0735460:intron | 25.0% |
| ! | AGACAGTGATTAATAAAACT+TGG | + | chr5_1:50785920-50785939 | None:intergenic | 25.0% |
| ATTGACAACATTACATGGAT+CGG | + | chr5_1:50783515-50783534 | None:intergenic | 30.0% | |
| GACTAATTGACAACATTACA+TGG | + | chr5_1:50783520-50783539 | None:intergenic | 30.0% | |
| TGTTGTCAATTAGTCGTTAT+AGG | - | chr5_1:50783525-50783544 | Msa0735460:intron | 30.0% | |
| GTTGTCAATTAGTCGTTATA+GGG | - | chr5_1:50783526-50783545 | Msa0735460:intron | 30.0% | |
| TTGACAACCTAAAGTACATT+TGG | + | chr5_1:50783790-50783809 | None:intergenic | 30.0% | |
| CTTTACATCATCAATAAGTC+TGG | - | chr5_1:50783949-50783968 | Msa0735460:intron | 30.0% | |
| TTGTTAATTGGAGTGAGTTT+CGG | - | chr5_1:50784093-50784112 | Msa0735460:intron | 30.0% | |
| AACAACGGGATAAAATACAA+AGG | + | chr5_1:50784171-50784190 | None:intergenic | 30.0% | |
| AATTAGGATATGACTTCAGT+TGG | - | chr5_1:50784275-50784294 | Msa0735460:intron | 30.0% | |
| AAATAACCCATCGTTAAGTT+AGG | - | chr5_1:50784836-50784855 | Msa0735460:intron | 30.0% | |
| TGTGGATGAAAATCAAATGA+TGG | + | chr5_1:50784948-50784967 | None:intergenic | 30.0% | |
| AACCATCTTTCATTAAAACC+TGG | + | chr5_1:50785007-50785026 | None:intergenic | 30.0% | |
| TGGAAATTCTACCTTTATTG+TGG | - | chr5_1:50785118-50785137 | Msa0735460:intron | 30.0% | |
| ! | AAGTCTTATCTATCTGATGT+GGG | + | chr5_1:50785238-50785257 | None:intergenic | 30.0% |
| ! | AAAGTCTTATCTATCTGATG+TGG | + | chr5_1:50785239-50785258 | None:intergenic | 30.0% |
| GATAAGAGTTTATAAAGACG+GGG | - | chr5_1:50785260-50785279 | Msa0735460:CDS | 30.0% | |
| GACTTTCCTAATGTATGTAA+AGG | - | chr5_1:50785461-50785480 | Msa0735460:intron | 30.0% | |
| ATTCATTGTGTGGATGTATT+TGG | - | chr5_1:50785573-50785592 | Msa0735460:intron | 30.0% | |
| ATTAATTCTTCTCTGCAACA+GGG | - | chr5_1:50785685-50785704 | Msa0735460:intron | 30.0% | |
| TGATTAATAAAACTTGGCCT+TGG | + | chr5_1:50785914-50785933 | None:intergenic | 30.0% | |
| ATTAATCACTGTCTTGTAAG+AGG | - | chr5_1:50785926-50785945 | Msa0735460:intron | 30.0% | |
| !! | CTACTATGTTTTATTGTACC+TGG | - | chr5_1:50785954-50785973 | Msa0735460:intron | 30.0% |
| ATTACCAGCCAAACTTCAAT+CGG | + | chr5_1:50783243-50783262 | None:intergenic | 35.0% | |
| ATTGTTAGGAGAGAGAAAGA+AGG | + | chr5_1:50783269-50783288 | None:intergenic | 35.0% | |
| !! | ATGAAAACGCAGAAGCATTT+GGG | + | chr5_1:50783359-50783378 | None:intergenic | 35.0% |
| !! | TATGAAAACGCAGAAGCATT+TGG | + | chr5_1:50783360-50783379 | None:intergenic | 35.0% |
| ACTATGCTACAGATCTAAAC+TGG | + | chr5_1:50783653-50783672 | None:intergenic | 35.0% | |
| AGTTTAGATCTGTAGCATAG+TGG | - | chr5_1:50783652-50783671 | Msa0735460:intron | 35.0% | |
| AACTTTCAGATTCTGGCAAA+AGG | - | chr5_1:50783900-50783919 | Msa0735460:intron | 35.0% | |
| TACATCATCAATAAGTCTGG+TGG | - | chr5_1:50783952-50783971 | Msa0735460:intron | 35.0% | |
| !! | TGGTGGATTGATCTACTATA+AGG | - | chr5_1:50783969-50783988 | Msa0735460:intron | 35.0% |
| ! | TAGCATGTTGGGTTGTTAAT+TGG | - | chr5_1:50784081-50784100 | Msa0735460:intron | 35.0% |
| AGTTGTATTTGCGAAGCTTA+GGG | - | chr5_1:50784403-50784422 | Msa0735460:CDS | 35.0% | |
| AGCAGTTTAAGAAACCACAA+TGG | - | chr5_1:50784488-50784507 | Msa0735460:CDS | 35.0% | |
| TGGATTAAATGATGCCATTG+TGG | + | chr5_1:50784505-50784524 | None:intergenic | 35.0% | |
| !! | GATACTGGTTCTAACAGATA+TGG | + | chr5_1:50784525-50784544 | None:intergenic | 35.0% |
| ! | TGAGTTAGAGCAATGTGTTT+TGG | - | chr5_1:50784582-50784601 | Msa0735460:intron | 35.0% |
| TGATATTCAGGATTATGGGT+CGG | - | chr5_1:50784642-50784661 | Msa0735460:intron | 35.0% | |
| TACAAATGATACCTTACGAG+TGG | - | chr5_1:50784678-50784697 | Msa0735460:intron | 35.0% | |
| AAGTAATACCTGTTAGCGAT+TGG | + | chr5_1:50784810-50784829 | None:intergenic | 35.0% | |
| TGAAAGCCTAACTTAACGAT+GGG | + | chr5_1:50784845-50784864 | None:intergenic | 35.0% | |
| ATCAGTATGCACATGATGTT+TGG | + | chr5_1:50784901-50784920 | None:intergenic | 35.0% | |
| !! | CATTTGATTTTCATCCACAC+TGG | - | chr5_1:50784949-50784968 | Msa0735460:intron | 35.0% |
| TTGATTATGTACTAGGAAGG+AGG | - | chr5_1:50785084-50785103 | Msa0735460:intron | 35.0% | |
| CTGCAACCTTTACATACATT+AGG | + | chr5_1:50785470-50785489 | None:intergenic | 35.0% | |
| CTAATGTATGTAAAGGTTGC+AGG | - | chr5_1:50785468-50785487 | Msa0735460:intron | 35.0% | |
| ! | ATTTAAACAAGGGTATGGGT+AGG | + | chr5_1:50785639-50785658 | None:intergenic | 35.0% |
| CATTAATTCTTCTCTGCAAC+AGG | - | chr5_1:50785684-50785703 | Msa0735460:intron | 35.0% | |
| GCATCTCTATCTCATAGAAA+GGG | + | chr5_1:50785806-50785825 | None:intergenic | 35.0% | |
| TCTAACTCAGTCAGTACAAA+AGG | - | chr5_1:50785854-50785873 | Msa0735460:intron | 35.0% | |
| AATAACCCCCAAGAGAACTT+TGG | + | chr5_1:50783173-50783192 | None:intergenic | 40.0% | |
| GGTTATTACAACGCAACAAG+AGG | - | chr5_1:50783186-50783205 | Msa0735460:three_prime_UTR | 40.0% | |
| TCGAAACGAGATTCATTGAC+AGG | - | chr5_1:50783213-50783232 | Msa0735460:three_prime_UTR | 40.0% | |
| CGAAACGAGATTCATTGACA+GGG | - | chr5_1:50783214-50783233 | Msa0735460:three_prime_UTR | 40.0% | |
| AGGATCCTAGTTGCATTAAG+TGG | - | chr5_1:50783387-50783406 | Msa0735460:CDS | 40.0% | |
| TAGCACCACTTAATGCAACT+AGG | + | chr5_1:50783395-50783414 | None:intergenic | 40.0% | |
| TGTATTCATTGTCTCCTCCA+AGG | - | chr5_1:50783450-50783469 | Msa0735460:CDS | 40.0% | |
| TGTAGTCCAGTCATATGAGT+TGG | - | chr5_1:50783473-50783492 | Msa0735460:CDS | 40.0% | |
| GTAGTCCAGTCATATGAGTT+GGG | - | chr5_1:50783474-50783493 | Msa0735460:CDS | 40.0% | |
| ! | AGATTCTGGCAAAAGGCTTT+TGG | - | chr5_1:50783907-50783926 | Msa0735460:intron | 40.0% |
| TCTTCGCTTCATTAGCATGT+TGG | - | chr5_1:50784069-50784088 | Msa0735460:intron | 40.0% | |
| CTTCGCTTCATTAGCATGTT+GGG | - | chr5_1:50784070-50784089 | Msa0735460:intron | 40.0% | |
| GAGTTGTATTTGCGAAGCTT+AGG | - | chr5_1:50784402-50784421 | Msa0735460:CDS | 40.0% | |
| ATTCCTGAACAACCTGAAAC+AGG | + | chr5_1:50784748-50784767 | None:intergenic | 40.0% | |
| GAAGATCAAATGTGTCAGCT+TGG | + | chr5_1:50784780-50784799 | None:intergenic | 40.0% | |
| CTGAAAGCCTAACTTAACGA+TGG | + | chr5_1:50784846-50784865 | None:intergenic | 40.0% | |
| !! | GGCCAGGTTTTAATGAAAGA+TGG | - | chr5_1:50785002-50785021 | Msa0735460:intron | 40.0% |
| !! | CTTCATTGTGTTGGCTTTGA+GGG | - | chr5_1:50785200-50785219 | Msa0735460:intron | 40.0% |
| !! | TTCATTGTGTTGGCTTTGAG+GGG | - | chr5_1:50785201-50785220 | Msa0735460:intron | 40.0% |
| CTAACTCATCCTTGCAAAAC+CGG | + | chr5_1:50785304-50785323 | None:intergenic | 40.0% | |
| ! | CTTTCTATTTGTTGAGTGCC+AGG | + | chr5_1:50785735-50785754 | None:intergenic | 40.0% |
| GGCATCTCTATCTCATAGAA+AGG | + | chr5_1:50785807-50785826 | None:intergenic | 40.0% | |
| TCAAAGAGCTCACATCGAAT+AGG | + | chr5_1:50785828-50785847 | None:intergenic | 40.0% | |
| AAAGGATCGTGTTGCATTGT+TGG | - | chr5_1:50785872-50785891 | Msa0735460:intron | 40.0% | |
| AAGGATCGTGTTGCATTGTT+GGG | - | chr5_1:50785873-50785892 | Msa0735460:intron | 40.0% | |
| TGTGTGCAAATACATAGACC+AGG | + | chr5_1:50785975-50785994 | None:intergenic | 40.0% | |
| ! | CTGCGTTTTCATAGAAGCTG+AGG | - | chr5_1:50783367-50783386 | Msa0735460:CDS | 45.0% |
| CATATGACTGGACTACACCT+TGG | + | chr5_1:50783470-50783489 | None:intergenic | 45.0% | |
| AGTGTCCCAACTCATATGAC+TGG | + | chr5_1:50783482-50783501 | None:intergenic | 45.0% | |
| ! | ATGAGTTGGGACACTGAAAG+AGG | - | chr5_1:50783487-50783506 | Msa0735460:CDS | 45.0% |
| ! | TGAGTTGGGACACTGAAAGA+GGG | - | chr5_1:50783488-50783507 | Msa0735460:intron | 45.0% |
| CAAATTCCACCACGCTATAG+CGG | + | chr5_1:50783559-50783578 | None:intergenic | 45.0% | |
| AAATGCGATGTAGCTGAAGC+AGG | - | chr5_1:50783763-50783782 | Msa0735460:intron | 45.0% | |
| AATGCGATGTAGCTGAAGCA+GGG | - | chr5_1:50783764-50783783 | Msa0735460:intron | 45.0% | |
| AGCAGGGCCAAATGTACTTT+AGG | - | chr5_1:50783780-50783799 | Msa0735460:intron | 45.0% | |
| !! | CTGGCAAAAGGCTTTTGGAA+TGG | - | chr5_1:50783912-50783931 | Msa0735460:intron | 45.0% |
| GGATATGACTTCAGTTGGCA+AGG | - | chr5_1:50784280-50784299 | Msa0735460:intron | 45.0% | |
| TATGACTTCAGTTGGCAAGG+TGG | - | chr5_1:50784283-50784302 | Msa0735460:intron | 45.0% | |
| AGGTGATAACTGCTGAGAGA+TGG | + | chr5_1:50784728-50784747 | None:intergenic | 45.0% | |
| CAGCAGTTATCACCTGTTTC+AGG | - | chr5_1:50784733-50784752 | Msa0735460:intron | 45.0% | |
| !! | TCACCTGTTTCAGGTTGTTC+AGG | - | chr5_1:50784742-50784761 | Msa0735460:intron | 45.0% |
| CATTGCTTCCAATCGCTAAC+AGG | - | chr5_1:50784799-50784818 | Msa0735460:intron | 45.0% | |
| ATGCCACAATTACGCGACTA+GGG | + | chr5_1:50785149-50785168 | None:intergenic | 45.0% | |
| AATGCCACAATTACGCGACT+AGG | + | chr5_1:50785150-50785169 | None:intergenic | 45.0% | |
| AGTCGCGTAATTGTGGCATT+TGG | - | chr5_1:50785150-50785169 | Msa0735460:intron | 45.0% | |
| GTCGCGTAATTGTGGCATTT+GGG | - | chr5_1:50785151-50785170 | Msa0735460:intron | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr5_1:50785193-50785212 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | chr5_1:50785191-50785210 | Msa0735460:intron | 45.0% | |
| ! | AGCCAACACAATGAAGGTGT+TGG | + | chr5_1:50785196-50785215 | None:intergenic | 45.0% |
| CCTCAAAGCCAACACAATGA+AGG | + | chr5_1:50785202-50785221 | None:intergenic | 45.0% | |
| !! | CCTTCATTGTGTTGGCTTTG+AGG | - | chr5_1:50785199-50785218 | Msa0735460:intron | 45.0% |
| !! | TCATTGTGTTGGCTTTGAGG+GGG | - | chr5_1:50785202-50785221 | Msa0735460:intron | 45.0% |
| !! | CAAAACCGGCTTGTAAGATG+AGG | + | chr5_1:50785290-50785309 | None:intergenic | 45.0% |
| !! | TCTTACAAGCCGGTTTTGCA+AGG | - | chr5_1:50785292-50785311 | Msa0735460:intron | 45.0% |
| ! | CGGTTTTGCAAGGATGAGTT+AGG | - | chr5_1:50785302-50785321 | Msa0735460:intron | 45.0% |
| CTGGATGCTGTCATCTTAGT+TGG | - | chr5_1:50785542-50785561 | Msa0735460:intron | 45.0% | |
| GGCACTTTGCATTCATTGTG+TGG | - | chr5_1:50785563-50785582 | Msa0735460:intron | 45.0% | |
| GGTCAATAAGTTGCTGACCA+AGG | - | chr5_1:50785894-50785913 | Msa0735460:intron | 45.0% | |
| CAGGGAAGCCGATTGAAGTT+TGG | - | chr5_1:50783232-50783251 | Msa0735460:three_prime_UTR | 50.0% | |
| GAAGCCGATTGAAGTTTGGC+TGG | - | chr5_1:50783236-50783255 | Msa0735460:three_prime_UTR | 50.0% | |
| ATGACTGGACTACACCTTGG+AGG | + | chr5_1:50783467-50783486 | None:intergenic | 50.0% | |
| CACCACGCTATAGCGGTATA+TGG | + | chr5_1:50783552-50783571 | None:intergenic | 50.0% | |
| CATATACCGCTATAGCGTGG+TGG | - | chr5_1:50783550-50783569 | Msa0735460:intron | 50.0% | |
| ATTCAGGATTATGGGTCGGC+TGG | - | chr5_1:50784646-50784665 | Msa0735460:intron | 50.0% | |
| CCATAAGCTAGCCACTCGTA+AGG | + | chr5_1:50784692-50784711 | None:intergenic | 50.0% | |
| !! | CCTTACGAGTGGCTAGCTTA+TGG | - | chr5_1:50784689-50784708 | Msa0735460:intron | 50.0% |
| GTTAGGCTTTCAGACTCGCA+TGG | - | chr5_1:50784853-50784872 | Msa0735460:intron | 50.0% | |
| GGGCTTCATATCTACCAGTG+TGG | + | chr5_1:50784966-50784985 | None:intergenic | 50.0% | |
| TATGAAGCCCTGCGAGTACT+TGG | - | chr5_1:50784976-50784995 | Msa0735460:intron | 50.0% | |
| GGAAGGAGGCTTGAGATTGT+TGG | - | chr5_1:50785098-50785117 | Msa0735460:intron | 50.0% | |
| TGCCACAATTACGCGACTAG+GGG | + | chr5_1:50785148-50785167 | None:intergenic | 50.0% | |
| GTGTTGGAGGCTGCAAATGA+AGG | + | chr5_1:50785180-50785199 | None:intergenic | 50.0% | |
| GCACTCCTCATCTTACAAGC+CGG | - | chr5_1:50785282-50785301 | Msa0735460:five_prime_UTR | 50.0% | |
| TTCTTTGCAGTGTGTGAGCC+TGG | - | chr5_1:50785714-50785733 | Msa0735460:intron | 50.0% | |
| GGCCATATACCGCTATAGCG+TGG | - | chr5_1:50783547-50783566 | Msa0735460:intron | 55.0% | |
| TTATGGGTCGGCTGGACGAA+TGG | - | chr5_1:50784654-50784673 | Msa0735460:intron | 55.0% | |
| CTAGGGGCGGACCACAATAA+AGG | + | chr5_1:50785132-50785151 | None:intergenic | 55.0% | |
| CACAATTACGCGACTAGGGG+CGG | + | chr5_1:50785145-50785164 | None:intergenic | 55.0% | |
| !! | TTGTGTTGGCTTTGAGGGGG+TGG | - | chr5_1:50785205-50785224 | Msa0735460:intron | 55.0% |
| AGCCCTGCGAGTACTTGGTC+TGG | - | chr5_1:50784981-50785000 | Msa0735460:intron | 60.0% | |
| GGCCAGACCAAGTACTCGCA+GGG | + | chr5_1:50784986-50785005 | None:intergenic | 60.0% | |
| TGGCCAGACCAAGTACTCGC+AGG | + | chr5_1:50784987-50785006 | None:intergenic | 60.0% | |
| TGCGAGTACTTGGTCTGGCC+AGG | - | chr5_1:50784986-50785005 | Msa0735460:intron | 60.0% | |
| CGCCCCTAGTCGCGTAATTG+TGG | - | chr5_1:50785143-50785162 | Msa0735460:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50783170 | 50786042 | 50783170 | ID=Msa0735460;Name=Msa0735460 |
| chr5_1 | mRNA | 50783170 | 50786042 | 50783170 | ID=Msa0735460-mRNA-1;Parent=Msa0735460;Name=Msa0735460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=110|1|1|1|0.66|0.75|4|140|141 |
| chr5_1 | exon | 50783170 | 50783506 | 50783170 | ID=Msa0735460-mRNA-1:exon:14276;Parent=Msa0735460-mRNA-1 |
| chr5_1 | exon | 50784392 | 50784560 | 50784392 | ID=Msa0735460-mRNA-1:exon:14275;Parent=Msa0735460-mRNA-1 |
| chr5_1 | exon | 50785222 | 50785303 | 50785222 | ID=Msa0735460-mRNA-1:exon:14274;Parent=Msa0735460-mRNA-1 |
| chr5_1 | exon | 50785955 | 50786042 | 50785955 | ID=Msa0735460-mRNA-1:exon:14273;Parent=Msa0735460-mRNA-1 |
| chr5_1 | five_prime_UTR | 50785955 | 50786042 | 50785955 | ID=Msa0735460-mRNA-1:five_prime_utr;Parent=Msa0735460-mRNA-1 |
| chr5_1 | five_prime_UTR | 50785282 | 50785303 | 50785282 | ID=Msa0735460-mRNA-1:five_prime_utr;Parent=Msa0735460-mRNA-1 |
| chr5_1 | CDS | 50785222 | 50785281 | 50785222 | ID=Msa0735460-mRNA-1:cds;Parent=Msa0735460-mRNA-1 |
| chr5_1 | CDS | 50784392 | 50784560 | 50784392 | ID=Msa0735460-mRNA-1:cds;Parent=Msa0735460-mRNA-1 |
| chr5_1 | CDS | 50783310 | 50783506 | 50783310 | ID=Msa0735460-mRNA-1:cds;Parent=Msa0735460-mRNA-1 |
| chr5_1 | three_prime_UTR | 50783170 | 50783309 | 50783170 | ID=Msa0735460-mRNA-1:three_prime_utr;Parent=Msa0735460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
