AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1310690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310690 MtrunA17_Chr8g0337431 100.000 159 0 0 1 159 1 159 6.37e-119 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310690 AT3G03100.1 78.205 156 34 0 1 156 1 156 1.91e-93 268
Msa1310690 AT3G03100.2 77.564 156 35 0 1 156 1 156 1.42e-92 266

Find 71 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCTATGTTTGTATGTA+AGG 0.235909 8_4:-7323200 None:intergenic
AGACAAATTGACTGTGAAAT+TGG 0.292048 8_4:+7326545 Msa1310690:three_prime_UTR
TCAATCCAGGGCAGAGAAAC+TGG 0.299097 8_4:+7326344 Msa1310690:CDS
CAAACCAAGATCCACAATAT+TGG 0.303383 8_4:+7324705 Msa1310690:CDS
AAACCAAGATCCACAATATT+GGG 0.303795 8_4:+7324706 Msa1310690:CDS
TGCCCCAATATTGTGGATCT+TGG 0.327061 8_4:-7324709 None:intergenic
CCACAAACGAACCGTGAATA+TGG 0.337289 8_4:+7326389 Msa1310690:exon
CTGGTCCAGTTTCTCTGCCC+TGG 0.348930 8_4:-7326349 None:intergenic
TTCCTGCTGAATGGCATGGC+TGG 0.388219 8_4:+7326095 Msa1310690:CDS
AATTGAATTAACAATTTGTC+AGG 0.396851 8_4:-7326463 None:intergenic
GTGAAGATACATATGGGATA+TGG 0.399640 8_4:-7326745 None:intergenic
GTATACTCCAAATCAGAGAT+AGG 0.401046 8_4:-7326655 None:intergenic
AAAACTGAAAACACACAGTA+TGG 0.408491 8_4:+7324774 Msa1310690:CDS
CCATATTCACGGTTCGTTTG+TGG 0.419524 8_4:-7326389 None:intergenic
AAGGGACATGCTCTCAATCC+AGG 0.420399 8_4:+7326331 Msa1310690:CDS
GCTTTGAGTTGCCGATGTAT+TGG 0.422998 8_4:+7326416 Msa1310690:three_prime_UTR
GTCTAGATATAATGCTTCTC+AGG 0.450196 8_4:+7326072 Msa1310690:CDS
ACAGGTATCCTTCATCTTTG+AGG 0.456990 8_4:-7323329 None:intergenic
TTTGTATGTAAGGCTGCGTT+TGG 0.463612 8_4:-7323190 None:intergenic
AAATAAAGTGAAGATACATA+TGG 0.469931 8_4:-7326752 None:intergenic
ACCGATTGGTGACAGTATAT+AGG 0.471413 8_4:-7326575 None:intergenic
CTTCTCAGGTTCCTGCTGAA+TGG 0.475351 8_4:+7326086 Msa1310690:CDS
AATATTGGGGCAACGCTTGT+TGG 0.475730 8_4:+7324720 Msa1310690:CDS
GATCATAAAGAAAATCTGTC+TGG 0.476518 8_4:+7326280 Msa1310690:CDS
CTTGTTGGTGTTGACAAATA+CGG 0.476795 8_4:+7324735 Msa1310690:CDS
GCAGCCTTACATACAAACAT+AGG 0.491757 8_4:+7323196 Msa1310690:five_prime_UTR
TGTTAATTCAATTCATGAGG+TGG 0.505124 8_4:+7326473 Msa1310690:three_prime_UTR
TTAAACACGGTGAAGGAGAA+AGG 0.511115 8_4:+7323285 Msa1310690:CDS
GGACTGCCATGGTTGGTACC+TGG 0.513101 8_4:-7326368 None:intergenic
AAGAGAAGAGAACGTGGTGG+TGG 0.519492 8_4:+7323220 Msa1310690:five_prime_UTR
ATGTAAGGCTGCGTTTGGTT+TGG 0.521221 8_4:-7323185 None:intergenic
TCCTATATACTGTCACCAAT+CGG 0.521834 8_4:+7326574 Msa1310690:three_prime_UTR
ACTTACAATAGGTTTCCATC+AGG 0.523729 8_4:-7323681 None:intergenic
CAGGTTCCTGCTGAATGGCA+TGG 0.525614 8_4:+7326091 Msa1310690:CDS
TGGATTGAGAGCATGTCCCT+TGG 0.535784 8_4:-7326329 None:intergenic
TTCAGACACCTCAAAGATGA+AGG 0.536736 8_4:+7323321 Msa1310690:CDS
AGCCAGCCATGCCATTCAGC+AGG 0.538183 8_4:-7326097 None:intergenic
TGAATTAACAATTTGTCAGG+AGG 0.542153 8_4:-7326460 None:intergenic
AATAAAGTGAAGATACATAT+GGG 0.542755 8_4:-7326751 None:intergenic
ATCGATCATGGCGTCGTCGG+TGG 0.542913 8_4:+7323251 Msa1310690:exon
TCCAGGAGATGCCTTCCTGA+TGG 0.545756 8_4:+7323666 Msa1310690:intron
TCAAAGCTGAACCATATTCA+CGG 0.548554 8_4:-7326400 None:intergenic
GTGGATCGATCGATCGATCA+TGG 0.552835 8_4:+7323239 Msa1310690:exon
CAAGCGTTGCCCCAATATTG+TGG 0.553229 8_4:-7324716 None:intergenic
AATTGTTAATTCAATTCATG+AGG 0.553881 8_4:+7326470 Msa1310690:three_prime_UTR
AGAGTTTATCTATCATTCCA+AGG 0.554573 8_4:+7326312 Msa1310690:CDS
GGTTCGTTTGTGGACTGCCA+TGG 0.557488 8_4:-7326379 None:intergenic
CGTTTGTGGACTGCCATGGT+TGG 0.558192 8_4:-7326375 None:intergenic
TACATCACATACATACCGAT+TGG 0.564099 8_4:-7326589 None:intergenic
TATACTCCAAATCAGAGATA+GGG 0.566561 8_4:-7326654 None:intergenic
CAGCCTTACATACAAACATA+GGG 0.584497 8_4:+7323197 Msa1310690:five_prime_UTR
ACAATAGGTTTCCATCAGGA+AGG 0.596452 8_4:-7323677 None:intergenic
AAAATTTGGCAGGAAGACAC+AGG 0.598790 8_4:+7326029 Msa1310690:intron
ACGGTGAAGGAGAAAGGTCT+CGG 0.598993 8_4:+7323291 Msa1310690:CDS
GAGTTTATCTATCATTCCAA+GGG 0.600374 8_4:+7326313 Msa1310690:CDS
AGGGACATGCTCTCAATCCA+GGG 0.603322 8_4:+7326332 Msa1310690:CDS
AAAGAAAATCTGTCTGGACA+TGG 0.605520 8_4:+7326286 Msa1310690:CDS
TCGATCGATCATGGCGTCGT+CGG 0.616609 8_4:+7323248 Msa1310690:exon
GAGCATCTTAAACACGGTGA+AGG 0.622926 8_4:+7323278 Msa1310690:CDS
AAACATTCAATCCAATACAT+CGG 0.625421 8_4:-7326427 None:intergenic
AAGCGAATTTACCTCATCGC+CGG 0.625501 8_4:-7326140 None:intergenic
AACTGATCACACCGGCGATG+AGG 0.628022 8_4:+7326129 Msa1310690:CDS
AACCAAGATCCACAATATTG+GGG 0.636179 8_4:+7324707 Msa1310690:CDS
TTTGGCAGGAAGACACAGGT+GGG 0.636329 8_4:+7326033 Msa1310690:intron
ATTTGGCAGGAAGACACAGG+TGG 0.636657 8_4:+7326032 Msa1310690:intron
ACTGGACCAGGTACCAACCA+TGG 0.665621 8_4:+7326362 Msa1310690:CDS
CACTTCATAACTGATCACAC+CGG 0.696701 8_4:+7326121 Msa1310690:CDS
GGTGAAGAGCATCTTAAACA+CGG 0.715006 8_4:+7323272 Msa1310690:CDS
GTGAAGGAGAAAGGTCTCGG+TGG 0.739929 8_4:+7323294 Msa1310690:CDS
GGGAAGAGAAGAGAACGTGG+TGG 0.753894 8_4:+7323217 Msa1310690:five_prime_UTR
ATAGGGAAGAGAAGAGAACG+TGG 0.792663 8_4:+7323214 Msa1310690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAACTTATA+AGG + chr8_4:7325351-7325370 Msa1310690:intron 10.0%
!! AAAATAAAATGAAATAAGAA+TGG + chr8_4:7325485-7325504 Msa1310690:intron 10.0%
!! AAATAAAATGAAATAAGAAT+GGG + chr8_4:7325486-7325505 Msa1310690:intron 10.0%
!! TAAGAAGAATTTAATAATAG+TGG - chr8_4:7323483-7323502 None:intergenic 15.0%
!! TATGTTCAAAATAATGAATA+TGG + chr8_4:7324121-7324140 Msa1310690:intron 15.0%
!! ATGTTCAAAATAATGAATAT+GGG + chr8_4:7324122-7324141 Msa1310690:intron 15.0%
!! TAACTAACTAACTAATTAAA+GGG - chr8_4:7324998-7325017 None:intergenic 15.0%
!! ATAACTAACTAACTAATTAA+AGG - chr8_4:7324999-7325018 None:intergenic 15.0%
!!! ATTATTAGTTTTTATACTGA+GGG - chr8_4:7325445-7325464 None:intergenic 15.0%
!! TGACAATAAATTATAGAATA+TGG - chr8_4:7325945-7325964 None:intergenic 15.0%
!!! CTTTATATTTTTTTAGCATA+TGG - chr8_4:7326193-7326212 None:intergenic 15.0%
!! TCATAATTGAAAAAGAGAAA+TGG - chr8_4:7323373-7323392 None:intergenic 20.0%
!!! TCCAATTGATTTCAATTTTT+CGG + chr8_4:7323543-7323562 Msa1310690:intron 20.0%
!!! TATTTTTGTTTTGAATTTCC+AGG + chr8_4:7323649-7323668 Msa1310690:intron 20.0%
!!! AACAAAAATTGACTTACAAT+AGG - chr8_4:7323695-7323714 None:intergenic 20.0%
!! GAAAATAGATTATATCCTAT+GGG - chr8_4:7324398-7324417 None:intergenic 20.0%
!! TGAAAATAGATTATATCCTA+TGG - chr8_4:7324399-7324418 None:intergenic 20.0%
!! CTTTACAGAAACAAATTTAA+GGG - chr8_4:7324555-7324574 None:intergenic 20.0%
!! ACTTTACAGAAACAAATTTA+AGG - chr8_4:7324556-7324575 None:intergenic 20.0%
!!! TAAATTTGTTTCTGTAAAGT+TGG + chr8_4:7324556-7324575 Msa1310690:intron 20.0%
!!! CATTATTAGTTTTTATACTG+AGG - chr8_4:7325446-7325465 None:intergenic 20.0%
!! TAAATGTCTAATGCAATTAT+TGG + chr8_4:7325585-7325604 Msa1310690:intron 20.0%
!! ATATCACAATATTTACAATC+AGG + chr8_4:7325640-7325659 Msa1310690:intron 20.0%
!! GACACATTATTGTTAAAATT+TGG + chr8_4:7326015-7326034 Msa1310690:intron 20.0%
!! TATTACTTAGGAAAAGAATT+AGG - chr8_4:7326170-7326189 None:intergenic 20.0%
!! TTCATTGCAAATATTATGTT+GGG - chr8_4:7326217-7326236 None:intergenic 20.0%
!! ATTCATTGCAAATATTATGT+TGG - chr8_4:7326218-7326237 None:intergenic 20.0%
!!! TTCTTTTATTGAAACCAAAA+AGG + chr8_4:7326248-7326267 Msa1310690:CDS 20.0%
!! AATTGAATTAACAATTTGTC+AGG - chr8_4:7326466-7326485 None:intergenic 20.0%
!! AATTGTTAATTCAATTCATG+AGG + chr8_4:7326470-7326489 Msa1310690:three_prime_UTR 20.0%
!!! CTGTATATAATTTTCATAAC+AGG - chr8_4:7326725-7326744 None:intergenic 20.0%
! TTGAAAAAGAGAAATGGAAA+GGG - chr8_4:7323367-7323386 None:intergenic 25.0%
! ATTGAAAAAGAGAAATGGAA+AGG - chr8_4:7323368-7323387 None:intergenic 25.0%
! TTAATAATCCCAAAAACGAA+AGG - chr8_4:7323420-7323439 None:intergenic 25.0%
!! CTTCTTATTTAACTGCAAAA+TGG + chr8_4:7323496-7323515 Msa1310690:intron 25.0%
! ACCGAAAAATTGAAATCAAT+TGG - chr8_4:7323547-7323566 None:intergenic 25.0%
!!! TGTTGTTTTTGGATGTAAAT+CGG + chr8_4:7323859-7323878 Msa1310690:intron 25.0%
!! ACAATTTTTCTCTATTGTGA+TGG + chr8_4:7324040-7324059 Msa1310690:intron 25.0%
! CAAAATAATGAATATGGGAT+AGG + chr8_4:7324127-7324146 Msa1310690:intron 25.0%
!! GTTAAGTTGTTTATCCAAAT+AGG - chr8_4:7324317-7324336 None:intergenic 25.0%
! AAAGTAAAAAGATTTCCCAT+AGG + chr8_4:7324380-7324399 Msa1310690:intron 25.0%
!! TCTATTTTCAATAGCTATCT+TGG + chr8_4:7324409-7324428 Msa1310690:intron 25.0%
! ATTGCTTTCTGAATTTATGT+AGG + chr8_4:7324682-7324701 Msa1310690:intron 25.0%
! TTTATTCTGATAAATGGATG+TGG + chr8_4:7324840-7324859 Msa1310690:intron 25.0%
! TATGACATAATGAACATGAT+AGG + chr8_4:7324967-7324986 Msa1310690:intron 25.0%
! CTTATCATTTGAGAGAATTA+CGG + chr8_4:7325066-7325085 Msa1310690:intron 25.0%
! GACATAACTAACTAACTAAA+GGG - chr8_4:7325113-7325132 None:intergenic 25.0%
! TGACATAACTAACTAACTAA+AGG - chr8_4:7325003-7325022 None:intergenic 25.0%
! TGACAAAATGTCATTCTTAT+AGG - chr8_4:7325333-7325352 None:intergenic 25.0%
! AAAAACTTATAAGGATGACA+TGG + chr8_4:7325360-7325379 Msa1310690:intron 25.0%
! AAAACTAATAATGCTAGCAT+TGG + chr8_4:7325453-7325472 Msa1310690:intron 25.0%
! AATGAAATAAGAATGGGATA+TGG + chr8_4:7325492-7325511 Msa1310690:intron 25.0%
! ATCTCATATGAGTTTCTATA+TGG + chr8_4:7325541-7325560 Msa1310690:intron 25.0%
!! ATATTGATTGCTTACTTGTA+AGG - chr8_4:7325624-7325643 None:intergenic 25.0%
! CATTATTGTTAAAATTTGGC+AGG + chr8_4:7326019-7326038 Msa1310690:intron 25.0%
! TTTAGCATATGGTATTACTT+AGG - chr8_4:7326182-7326201 None:intergenic 25.0%
! TCATTGCAAATATTATGTTG+GGG - chr8_4:7326216-7326235 None:intergenic 25.0%
! TTATTGAAACCAAAAAGGTA+CGG + chr8_4:7326253-7326272 Msa1310690:CDS 25.0%
! AAACATTCAATCCAATACAT+CGG - chr8_4:7326430-7326449 None:intergenic 25.0%
!! AATTTTCATAACAGGTTTGA+GGG - chr8_4:7326717-7326736 None:intergenic 25.0%
!! TAATTTTCATAACAGGTTTG+AGG - chr8_4:7326718-7326737 None:intergenic 25.0%
TGAAAAAGAGAAATGGAAAG+GGG - chr8_4:7323366-7323385 None:intergenic 30.0%
GGGCTGAATAATGATTATTA+TGG - chr8_4:7323444-7323463 None:intergenic 30.0%
! GGAGTTTGATTTCAACTATA+CGG - chr8_4:7323526-7323545 None:intergenic 30.0%
TGCTTCATAATTTCCCTAAA+TGG + chr8_4:7323813-7323832 Msa1310690:intron 30.0%
AATTTCCCTAAATGGATAGT+TGG + chr8_4:7323821-7323840 Msa1310690:intron 30.0%
!!! GTTGTTTTTGGATGTAAATC+GGG + chr8_4:7323860-7323879 Msa1310690:intron 30.0%
! ATTTTTCTCTATTGTGATGG+AGG + chr8_4:7324043-7324062 Msa1310690:intron 30.0%
!! TTTTTCTCTATTGTGATGGA+GGG + chr8_4:7324044-7324063 Msa1310690:intron 30.0%
!! TTTTGAAGAAAAGGAATGTG+AGG + chr8_4:7324068-7324087 Msa1310690:intron 30.0%
TTTGAAGAAAAGGAATGTGA+GGG + chr8_4:7324069-7324088 Msa1310690:intron 30.0%
ATTGCAATCAGATTCCTATT+TGG + chr8_4:7324300-7324319 Msa1310690:intron 30.0%
! TGGATAAACAACTTAACTTG+AGG + chr8_4:7324320-7324339 Msa1310690:intron 30.0%
ACACAAGGAAATTCAAATCT+CGG - chr8_4:7324635-7324654 None:intergenic 30.0%
AATTCAGAAAGCAATTAGAG+TGG - chr8_4:7324677-7324696 None:intergenic 30.0%
AAACCAAGATCCACAATATT+GGG + chr8_4:7324706-7324725 Msa1310690:CDS 30.0%
AAAACTGAAAACACACAGTA+TGG + chr8_4:7324774-7324793 Msa1310690:CDS 30.0%
GTGTGGTTTATTCTGATAAA+TGG + chr8_4:7324834-7324853 Msa1310690:intron 30.0%
CTTATCATTCGAGAGAATTA+CGG + chr8_4:7325175-7325194 Msa1310690:intron 30.0%
!! TGTTCTAGTTCTCTAATAGA+GGG + chr8_4:7325242-7325261 Msa1310690:intron 30.0%
!! TTAGTTTTTATACTGAGGGT+GGG - chr8_4:7325441-7325460 None:intergenic 30.0%
!!! ATTAGTTTTTATACTGAGGG+TGG - chr8_4:7325442-7325461 None:intergenic 30.0%
AATCATCTTATAGGCATGTT+CGG - chr8_4:7325731-7325750 None:intergenic 30.0%
ATGGAATGCAATCATCTTAT+AGG - chr8_4:7325740-7325759 None:intergenic 30.0%
TAAGATGATTGCATTCCATT+TGG + chr8_4:7325741-7325760 Msa1310690:intron 30.0%
AAGATGATTGCATTCCATTT+GGG + chr8_4:7325742-7325761 Msa1310690:intron 30.0%
! AAGTGTTATTGCCATTGATT+GGG - chr8_4:7325875-7325894 None:intergenic 30.0%
! GAAAGTATGATTCACTTTAG+AGG + chr8_4:7325908-7325927 Msa1310690:intron 30.0%
TATTGTCAAGACTCAAACTT+TGG + chr8_4:7325957-7325976 Msa1310690:intron 30.0%
GATCATAAAGAAAATCTGTC+TGG + chr8_4:7326280-7326299 Msa1310690:CDS 30.0%
AGAGTTTATCTATCATTCCA+AGG + chr8_4:7326312-7326331 Msa1310690:CDS 30.0%
GAGTTTATCTATCATTCCAA+GGG + chr8_4:7326313-7326332 Msa1310690:CDS 30.0%
TGAATTAACAATTTGTCAGG+AGG - chr8_4:7326463-7326482 None:intergenic 30.0%
TGTTAATTCAATTCATGAGG+TGG + chr8_4:7326473-7326492 Msa1310690:three_prime_UTR 30.0%
AGACAAATTGACTGTGAAAT+TGG + chr8_4:7326545-7326564 Msa1310690:three_prime_UTR 30.0%
TATACTCCAAATCAGAGATA+GGG - chr8_4:7326657-7326676 None:intergenic 30.0%
! ATTTTCATAACAGGTTTGAG+GGG - chr8_4:7326716-7326735 None:intergenic 30.0%
CAGCCTTACATACAAACATA+GGG + chr8_4:7323197-7323216 Msa1310690:five_prime_UTR 35.0%
CTTCCCTATGTTTGTATGTA+AGG - chr8_4:7323203-7323222 None:intergenic 35.0%
!! CAAAAACGAAAGGTACTACA+CGG - chr8_4:7323410-7323429 None:intergenic 35.0%
!! GTGTAGTACCTTTCGTTTTT+GGG + chr8_4:7323409-7323428 Msa1310690:intron 35.0%
!!! GTGGAAAAAGCGCATTTTTT+GGG - chr8_4:7323464-7323483 None:intergenic 35.0%
!!! AGTGGAAAAAGCGCATTTTT+TGG - chr8_4:7323465-7323484 None:intergenic 35.0%
ACTTACAATAGGTTTCCATC+AGG - chr8_4:7323684-7323703 None:intergenic 35.0%
!!! GAGCTTTTAGGTGTTGTTTT+TGG + chr8_4:7323848-7323867 Msa1310690:intron 35.0%
!! ATGGAGGGTTTTTGAAGAAA+AGG + chr8_4:7324059-7324078 Msa1310690:intron 35.0%
TTTCAACTCAACCTAAGGTA+TGG - chr8_4:7324265-7324284 None:intergenic 35.0%
AGTTCTTTCAACTCAACCTA+AGG - chr8_4:7324270-7324289 None:intergenic 35.0%
GGCTTATTGAGTTTATCTAC+TGG - chr8_4:7324520-7324539 None:intergenic 35.0%
AACAAATTTAAGGGCCTGTT+TGG - chr8_4:7324546-7324565 None:intergenic 35.0%
!! GTTTCTGTAAAGTTGGTGAA+AGG + chr8_4:7324563-7324582 Msa1310690:intron 35.0%
ACAAGGAAATTCAAATCTCG+GGG - chr8_4:7324633-7324652 None:intergenic 35.0%
CACAAGGAAATTCAAATCTC+GGG - chr8_4:7324634-7324653 None:intergenic 35.0%
CAAACCAAGATCCACAATAT+TGG + chr8_4:7324705-7324724 Msa1310690:CDS 35.0%
AACCAAGATCCACAATATTG+GGG + chr8_4:7324707-7324726 Msa1310690:CDS 35.0%
!! CTTGTTGGTGTTGACAAATA+CGG + chr8_4:7324735-7324754 Msa1310690:CDS 35.0%
TCTATATCTGTATGTGTGTG+TGG + chr8_4:7324817-7324836 Msa1310690:intron 35.0%
TTTGAGAGAATTACGGCATT+TGG + chr8_4:7325073-7325092 Msa1310690:intron 35.0%
TTGAGAGAATTACGGCATTT+GGG + chr8_4:7325074-7325093 Msa1310690:intron 35.0%
AATTACGGCATTTGGGTAAT+TGG + chr8_4:7325081-7325100 Msa1310690:intron 35.0%
ATTACGGCATTTGGGTAATT+GGG + chr8_4:7325082-7325101 Msa1310690:intron 35.0%
AATTACGGCATCTAGGTAAT+TGG + chr8_4:7325190-7325209 Msa1310690:intron 35.0%
ATTACGGCATCTAGGTAATT+GGG + chr8_4:7325191-7325210 Msa1310690:intron 35.0%
AGAACACTGTAGAACTTTGA+GGG - chr8_4:7325228-7325247 None:intergenic 35.0%
TAGAACACTGTAGAACTTTG+AGG - chr8_4:7325229-7325248 None:intergenic 35.0%
!! GTGTTCTAGTTCTCTAATAG+AGG + chr8_4:7325241-7325260 Msa1310690:intron 35.0%
TGTTTGGTAAGTAGGAAGTA+GGG - chr8_4:7325274-7325293 None:intergenic 35.0%
! CCTCTCTATCTTGTTATGAT+GGG - chr8_4:7325301-7325320 None:intergenic 35.0%
CCATCATAACAAGATAGAGA+GGG + chr8_4:7325299-7325318 Msa1310690:intron 35.0%
CATCATAACAAGATAGAGAG+GGG + chr8_4:7325300-7325319 Msa1310690:intron 35.0%
ATCATAACAAGATAGAGAGG+GGG + chr8_4:7325301-7325320 Msa1310690:intron 35.0%
AACTTATAAGGATGACATGG+TGG + chr8_4:7325363-7325382 Msa1310690:intron 35.0%
! TAGTTTTTATACTGAGGGTG+GGG - chr8_4:7325440-7325459 None:intergenic 35.0%
TATGGAGTAGAATACTACTG+AGG + chr8_4:7325559-7325578 Msa1310690:intron 35.0%
ATGGAGTAGAATACTACTGA+GGG + chr8_4:7325560-7325579 Msa1310690:intron 35.0%
! GAAGTGTTATTGCCATTGAT+TGG - chr8_4:7325876-7325895 None:intergenic 35.0%
GTCTAGATATAATGCTTCTC+AGG + chr8_4:7326072-7326091 Msa1310690:CDS 35.0%
AAAGAAAATCTGTCTGGACA+TGG + chr8_4:7326286-7326305 Msa1310690:CDS 35.0%
TCAAAGCTGAACCATATTCA+CGG - chr8_4:7326403-7326422 None:intergenic 35.0%
TCCTATATACTGTCACCAAT+CGG + chr8_4:7326574-7326593 Msa1310690:three_prime_UTR 35.0%
TACATCACATACATACCGAT+TGG - chr8_4:7326592-7326611 None:intergenic 35.0%
! ATTTTGCCCTATCTCTGATT+TGG + chr8_4:7326648-7326667 Msa1310690:three_prime_UTR 35.0%
GTATACTCCAAATCAGAGAT+AGG - chr8_4:7326658-7326677 None:intergenic 35.0%
TTTGTATGTAAGGCTGCGTT+TGG - chr8_4:7323193-7323212 None:intergenic 40.0%
GCAGCCTTACATACAAACAT+AGG + chr8_4:7323196-7323215 Msa1310690:five_prime_UTR 40.0%
!! GGTGAAGAGCATCTTAAACA+CGG + chr8_4:7323272-7323291 Msa1310690:CDS 40.0%
TTAAACACGGTGAAGGAGAA+AGG + chr8_4:7323285-7323304 Msa1310690:CDS 40.0%
TTCAGACACCTCAAAGATGA+AGG + chr8_4:7323321-7323340 Msa1310690:CDS 40.0%
ACAGGTATCCTTCATCTTTG+AGG - chr8_4:7323332-7323351 None:intergenic 40.0%
GAGAAATGGAAAGGGGAAAA+GGG - chr8_4:7323359-7323378 None:intergenic 40.0%
AGAGAAATGGAAAGGGGAAA+AGG - chr8_4:7323360-7323379 None:intergenic 40.0%
! CGTGTAGTACCTTTCGTTTT+TGG + chr8_4:7323408-7323427 Msa1310690:intron 40.0%
ACAATAGGTTTCCATCAGGA+AGG - chr8_4:7323680-7323699 None:intergenic 40.0%
CGCATCCAACTATCCATTTA+GGG - chr8_4:7323829-7323848 None:intergenic 40.0%
TCGCATCCAACTATCCATTT+AGG - chr8_4:7323830-7323849 None:intergenic 40.0%
! ATAGTTGGATGCGAGCTTTT+AGG + chr8_4:7323836-7323855 Msa1310690:intron 40.0%
! CGGGTTTGAAGAGAGTTTTT+AGG + chr8_4:7323987-7324006 Msa1310690:intron 40.0%
! TGAGGGCAGCATTTTCATTT+TGG + chr8_4:7324086-7324105 Msa1310690:intron 40.0%
ATGGTTGGATGGAGGATTTA+GGG - chr8_4:7324246-7324265 None:intergenic 40.0%
TATGGTTGGATGGAGGATTT+AGG - chr8_4:7324247-7324266 None:intergenic 40.0%
AACTCAACCTAAGGTATGGT+TGG - chr8_4:7324261-7324280 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG - chr8_4:7324494-7324513 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr8_4:7324495-7324514 None:intergenic 40.0%
CTCAATAAGCCAATCCAAAC+AGG + chr8_4:7324529-7324548 Msa1310690:intron 40.0%
ATTTAAGGGCCTGTTTGGAT+TGG - chr8_4:7324541-7324560 None:intergenic 40.0%
GGAAAAACACGTGTAACACA+AGG - chr8_4:7324650-7324669 None:intergenic 40.0%
GAAAGCAATTAGAGTGGAAG+AGG - chr8_4:7324671-7324690 None:intergenic 40.0%
ACAGATATAGACAGAGAGAG+CGG - chr8_4:7324808-7324827 None:intergenic 40.0%
AAAACCAGAATGCTTGAAGC+TGG - chr8_4:7324929-7324948 None:intergenic 40.0%
! TAGGTAATTGGGTGGTTTGT+AGG + chr8_4:7325202-7325221 Msa1310690:intron 40.0%
GTTTGGTAAGTAGGAAGTAG+GGG - chr8_4:7325273-7325292 None:intergenic 40.0%
CTGTTTGGTAAGTAGGAAGT+AGG - chr8_4:7325275-7325294 None:intergenic 40.0%
CTACTTCCTACTTACCAAAC+AGG + chr8_4:7325273-7325292 Msa1310690:intron 40.0%
! TGTTATGATGGGAACCTGTT+TGG - chr8_4:7325290-7325309 None:intergenic 40.0%
CCCATCATAACAAGATAGAG+AGG + chr8_4:7325298-7325317 Msa1310690:intron 40.0%
! CCCTCTCTATCTTGTTATGA+TGG - chr8_4:7325302-7325321 None:intergenic 40.0%
TGGGATATGGTGTAATGTTG+TGG + chr8_4:7325505-7325524 Msa1310690:intron 40.0%
! CCATTGATTGGGAAATCAAC+GGG - chr8_4:7325864-7325883 None:intergenic 40.0%
! GCCATTGATTGGGAAATCAA+CGG - chr8_4:7325865-7325884 None:intergenic 40.0%
GTCAAGACTCAAACTTTGGT+TGG + chr8_4:7325961-7325980 Msa1310690:intron 40.0%
AAAATTTGGCAGGAAGACAC+AGG + chr8_4:7326029-7326048 Msa1310690:intron 40.0%
CACTTCATAACTGATCACAC+CGG + chr8_4:7326121-7326140 Msa1310690:CDS 40.0%
! TGATCAAGACCGTACCTTTT+TGG - chr8_4:7326265-7326284 None:intergenic 40.0%
! ACCGATTGGTGACAGTATAT+AGG - chr8_4:7326578-7326597 None:intergenic 40.0%
ATGTAAGGCTGCGTTTGGTT+TGG - chr8_4:7323188-7323207 None:intergenic 45.0%
ATAGGGAAGAGAAGAGAACG+TGG + chr8_4:7323214-7323233 Msa1310690:five_prime_UTR 45.0%
GAGCATCTTAAACACGGTGA+AGG + chr8_4:7323278-7323297 Msa1310690:CDS 45.0%
AAAGGGGAAAAGGGACAAAC+AGG - chr8_4:7323350-7323369 None:intergenic 45.0%
TGAGAGTTTGTCGCCCATTT+GGG - chr8_4:7323934-7323953 None:intergenic 45.0%
TGTCGTTGCATACCCAAACT+CGG + chr8_4:7323967-7323986 Msa1310690:intron 45.0%
CTCTCTTCAAACCCGAGTTT+GGG - chr8_4:7323982-7324001 None:intergenic 45.0%
ACTCTCTTCAAACCCGAGTT+TGG - chr8_4:7323983-7324002 None:intergenic 45.0%
TGGTTGGATGGAGGATTTAG+GGG - chr8_4:7324245-7324264 None:intergenic 45.0%
CAACCTAAGGTATGGTTGGA+TGG - chr8_4:7324257-7324276 None:intergenic 45.0%
TGCCCCAATATTGTGGATCT+TGG - chr8_4:7324712-7324731 None:intergenic 45.0%
AATATTGGGGCAACGCTTGT+TGG + chr8_4:7324720-7324739 Msa1310690:CDS 45.0%
AGATATAGACAGAGAGAGCG+GGG - chr8_4:7324806-7324825 None:intergenic 45.0%
CAGATATAGACAGAGAGAGC+GGG - chr8_4:7324807-7324826 None:intergenic 45.0%
AAGACCAGTTGCGATCACTT+GGG + chr8_4:7324894-7324913 Msa1310690:intron 45.0%
TCGAGAGAATTACGGCATCT+AGG + chr8_4:7325183-7325202 Msa1310690:intron 45.0%
TGGGAACCTGTTTGGTAAGT+AGG - chr8_4:7325282-7325301 None:intergenic 45.0%
!! TAAGGATGACATGGTGGATG+AGG + chr8_4:7325369-7325388 Msa1310690:intron 45.0%
AGTTAAGGAGTGGAGTGATG+AGG + chr8_4:7325398-7325417 Msa1310690:intron 45.0%
GCACACACAATTGTCCCAAA+TGG - chr8_4:7325759-7325778 None:intergenic 45.0%
!! CCCGTTGATTTCCCAATCAA+TGG + chr8_4:7325861-7325880 Msa1310690:intron 45.0%
AAGCGAATTTACCTCATCGC+CGG - chr8_4:7326143-7326162 None:intergenic 45.0%
CCATATTCACGGTTCGTTTG+TGG - chr8_4:7326392-7326411 None:intergenic 45.0%
CCACAAACGAACCGTGAATA+TGG + chr8_4:7326389-7326408 Msa1310690:exon 45.0%
!! GCTTTGAGTTGCCGATGTAT+TGG + chr8_4:7326416-7326435 Msa1310690:three_prime_UTR 45.0%
AAGAGAAGAGAACGTGGTGG+TGG + chr8_4:7323220-7323239 Msa1310690:five_prime_UTR 50.0%
GTGGATCGATCGATCGATCA+TGG + chr8_4:7323239-7323258 Msa1310690:exon 50.0%
ACGGTGAAGGAGAAAGGTCT+CGG + chr8_4:7323291-7323310 Msa1310690:CDS 50.0%
ACTAAACCCTCGCGCTTTGT+GGG + chr8_4:7323907-7323926 Msa1310690:intron 50.0%
GTGAGAGTTTGTCGCCCATT+TGG - chr8_4:7323935-7323954 None:intergenic 50.0%
GTCGTTGCATACCCAAACTC+GGG + chr8_4:7323968-7323987 Msa1310690:intron 50.0%
TTGGATGGAGGATTTAGGGG+GGG - chr8_4:7324242-7324261 None:intergenic 50.0%
GTTGGATGGAGGATTTAGGG+GGG - chr8_4:7324243-7324262 None:intergenic 50.0%
GGTTGGATGGAGGATTTAGG+GGG - chr8_4:7324244-7324263 None:intergenic 50.0%
CCTAAGGTATGGTTGGATGG+AGG - chr8_4:7324254-7324273 None:intergenic 50.0%
CCTCCATCCAACCATACCTT+AGG + chr8_4:7324251-7324270 Msa1310690:intron 50.0%
! CAAGCGTTGCCCCAATATTG+TGG - chr8_4:7324719-7324738 None:intergenic 50.0%
! CAAGTGATCGCAACTGGTCT+TGG - chr8_4:7324895-7324914 None:intergenic 50.0%
CAAGACCAGTTGCGATCACT+TGG + chr8_4:7324893-7324912 Msa1310690:intron 50.0%
ATCGCCAGCTTCAAGCATTC+TGG + chr8_4:7324922-7324941 Msa1310690:intron 50.0%
ACGGCATCTAGGTAATTGGG+TGG + chr8_4:7325194-7325213 Msa1310690:intron 50.0%
!! GATGACATGGTGGATGAGGT+GGG + chr8_4:7325373-7325392 Msa1310690:intron 50.0%
TGGATGAGGTGGGAGAGTTA+AGG + chr8_4:7325383-7325402 Msa1310690:intron 50.0%
TAAGGAGTGGAGTGATGAGG+AGG + chr8_4:7325401-7325420 Msa1310690:intron 50.0%
TGGAGTGATGAGGAGGTCAA+TGG + chr8_4:7325408-7325427 Msa1310690:intron 50.0%
TGTGTGCAACACACAGCGAA+AGG + chr8_4:7325772-7325791 Msa1310690:intron 50.0%
ATTTGGCAGGAAGACACAGG+TGG + chr8_4:7326032-7326051 Msa1310690:intron 50.0%
TTTGGCAGGAAGACACAGGT+GGG + chr8_4:7326033-7326052 Msa1310690:intron 50.0%
CTTCTCAGGTTCCTGCTGAA+TGG + chr8_4:7326086-7326105 Msa1310690:CDS 50.0%
! TGGATTGAGAGCATGTCCCT+TGG - chr8_4:7326332-7326351 None:intergenic 50.0%
AAGGGACATGCTCTCAATCC+AGG + chr8_4:7326331-7326350 Msa1310690:CDS 50.0%
AGGGACATGCTCTCAATCCA+GGG + chr8_4:7326332-7326351 Msa1310690:CDS 50.0%
TCAATCCAGGGCAGAGAAAC+TGG + chr8_4:7326344-7326363 Msa1310690:CDS 50.0%
GGGAAGAGAAGAGAACGTGG+TGG + chr8_4:7323217-7323236 Msa1310690:five_prime_UTR 55.0%
TCGATCGATCATGGCGTCGT+CGG + chr8_4:7323248-7323267 Msa1310690:exon 55.0%
GTGAAGGAGAAAGGTCTCGG+TGG + chr8_4:7323294-7323313 Msa1310690:CDS 55.0%
TCCAGGAGATGCCTTCCTGA+TGG + chr8_4:7323666-7323685 Msa1310690:intron 55.0%
!! TCCATCAGGAAGGCATCTCC+TGG - chr8_4:7323670-7323689 None:intergenic 55.0%
GTATCCTCTGCCTGCAATGG+CGG + chr8_4:7323882-7323901 Msa1310690:intron 55.0%
GGTTTAGTCTCCGCCATTGC+AGG - chr8_4:7323895-7323914 None:intergenic 55.0%
GACTAAACCCTCGCGCTTTG+TGG + chr8_4:7323906-7323925 Msa1310690:intron 55.0%
GCGCTTTGTGGGACCCAAAT+GGG + chr8_4:7323918-7323937 Msa1310690:intron 55.0%
TTTAGGGGGGGACGAAAGGA+CGG - chr8_4:7324230-7324249 None:intergenic 55.0%
AGGATTTAGGGGGGGACGAA+AGG - chr8_4:7324234-7324253 None:intergenic 55.0%
!! CTGGTCTTGGCTCAAGGGAT+TGG - chr8_4:7324882-7324901 None:intergenic 55.0%
!! CGCAACTGGTCTTGGCTCAA+GGG - chr8_4:7324887-7324906 None:intergenic 55.0%
!! TCGCAACTGGTCTTGGCTCA+AGG - chr8_4:7324888-7324907 None:intergenic 55.0%
!! GGATGACATGGTGGATGAGG+TGG + chr8_4:7325372-7325391 Msa1310690:intron 55.0%
GAGGTGGGAGAGTTAAGGAG+TGG + chr8_4:7325388-7325407 Msa1310690:intron 55.0%
CAGGTTCCTGCTGAATGGCA+TGG + chr8_4:7326091-7326110 Msa1310690:CDS 55.0%
TTCCTGCTGAATGGCATGGC+TGG + chr8_4:7326095-7326114 Msa1310690:CDS 55.0%
AACTGATCACACCGGCGATG+AGG + chr8_4:7326129-7326148 Msa1310690:CDS 55.0%
ACTGGACCAGGTACCAACCA+TGG + chr8_4:7326362-7326381 Msa1310690:CDS 55.0%
! CGTTTGTGGACTGCCATGGT+TGG - chr8_4:7326378-7326397 None:intergenic 55.0%
! GGTTCGTTTGTGGACTGCCA+TGG - chr8_4:7326382-7326401 None:intergenic 55.0%
ATCGATCATGGCGTCGTCGG+TGG + chr8_4:7323251-7323270 Msa1310690:exon 60.0%
CGGGTATCCTCTGCCTGCAA+TGG + chr8_4:7323879-7323898 Msa1310690:intron 60.0%
TTGGGTCCCACAAAGCGCGA+GGG - chr8_4:7323916-7323935 None:intergenic 60.0%
TTTGGGTCCCACAAAGCGCG+AGG - chr8_4:7323917-7323936 None:intergenic 60.0%
CGCGCTTTGTGGGACCCAAA+TGG + chr8_4:7323917-7323936 Msa1310690:intron 60.0%
GCAGCCCAAGTGATCGCAAC+TGG - chr8_4:7324901-7324920 None:intergenic 60.0%
AGCCAGCCATGCCATTCAGC+AGG - chr8_4:7326100-7326119 None:intergenic 60.0%
CTGGTCCAGTTTCTCTGCCC+TGG - chr8_4:7326352-7326371 None:intergenic 60.0%
CAGGGCAGAGAAACTGGACC+AGG + chr8_4:7326350-7326369 Msa1310690:CDS 60.0%
! GGACTGCCATGGTTGGTACC+TGG - chr8_4:7326371-7326390 None:intergenic 60.0%
GTCTCCGCCATTGCAGGCAG+AGG - chr8_4:7323889-7323908 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 7323139 7326764 7323139 ID=Msa1310690;Name=Msa1310690
chr8_4 mRNA 7323139 7326764 7323139 ID=Msa1310690-mRNA-1;Parent=Msa1310690;Name=Msa1310690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=119|1|1|1|1|1|5|359|159
chr8_4 exon 7323139 7323349 7323139 ID=Msa1310690-mRNA-1:exon:2608;Parent=Msa1310690-mRNA-1
chr8_4 exon 7323671 7323697 7323671 ID=Msa1310690-mRNA-1:exon:2609;Parent=Msa1310690-mRNA-1
chr8_4 exon 7324704 7324795 7324704 ID=Msa1310690-mRNA-1:exon:2610;Parent=Msa1310690-mRNA-1
chr8_4 exon 7326041 7326150 7326041 ID=Msa1310690-mRNA-1:exon:2611;Parent=Msa1310690-mRNA-1
chr8_4 exon 7326247 7326764 7326247 ID=Msa1310690-mRNA-1:exon:2612;Parent=Msa1310690-mRNA-1
chr8_4 five_prime_UTR 7323139 7323257 7323139 ID=Msa1310690-mRNA-1:five_prime_utr;Parent=Msa1310690-mRNA-1
chr8_4 CDS 7323258 7323349 7323258 ID=Msa1310690-mRNA-1:cds;Parent=Msa1310690-mRNA-1
chr8_4 CDS 7323671 7323697 7323671 ID=Msa1310690-mRNA-1:cds;Parent=Msa1310690-mRNA-1
chr8_4 CDS 7324704 7324795 7324704 ID=Msa1310690-mRNA-1:cds;Parent=Msa1310690-mRNA-1
chr8_4 CDS 7326041 7326150 7326041 ID=Msa1310690-mRNA-1:cds;Parent=Msa1310690-mRNA-1
chr8_4 CDS 7326247 7326405 7326247 ID=Msa1310690-mRNA-1:cds;Parent=Msa1310690-mRNA-1
chr8_4 three_prime_UTR 7326406 7326764 7326406 ID=Msa1310690-mRNA-1:three_prime_utr;Parent=Msa1310690-mRNA-1
Gene Sequence

>Msa1310690

ATGGCGTCGTCGGTGGTGAAGAGCATCTTAAACACGGTGAAGGAGAAAGGTCTCGGTGGCTTCTTCAGACACCTCAAAGATGAAGGATACCTGAGATGCCTTCCTGATGGAAACCTATTGCAAACCAAGATCCACAATATTGGGGCAACGCTTGTTGGTGTTGACAAATACGGTAACAAGTATTATGAGAAAACTGAAAACACACAGTATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGTCTAGATATAATGCTTCTCAGGTTCCTGCTGAATGGCATGGCTGGCTTCACTTCATAACTGATCACACCGGCGATGAGCTTCTTTTATTGAAACCAAAAAGGTACGGTCTTGATCATAAAGAAAATCTGTCTGGACATGGTGAAGAGTTTATCTATCATTCCAAGGGACATGCTCTCAATCCAGGGCAGAGAAACTGGACCAGGTACCAACCATGGCAGTCCACAAACGAACCGTGA

Protein sequence

>Msa1310690

MASSVVKSILNTVKEKGLGGFFRHLKDEGYLRCLPDGNLLQTKIHNIGATLVGVDKYGNKYYEKTENTQYGRHRWVEYAEKSRYNASQVPAEWHGWLHFITDHTGDELLLLKPKRYGLDHKENLSGHGEEFIYHSKGHALNPGQRNWTRYQPWQSTNEP*