AlfalfaGEDB | Msa0795960

M. sativa cultivar zhongmu-4 / Msa0795960

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795960	XP_003611279.1	95.862	290	8	2	1	286	1	290	0.0	564

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795960	G7JW04	95.862	290	8	2	1	286	1	290	0.0	564

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036430	Msa0795960	0.801775	7.681036e-49	-8.615850e-47
Msa0130570	Msa0795960	0.812430	4.256507e-51	-8.615850e-47
Msa0191040	Msa0795960	0.800012	1.759307e-48	-8.615850e-47
Msa0197930	Msa0795960	0.811205	7.865672e-51	-8.615850e-47
Msa0203030	Msa0795960	0.808281	3.345693e-50	-8.615850e-47
Msa0219190	Msa0795960	0.809474	1.858618e-50	-8.615850e-47
Msa0317280	Msa0795960	0.806550	7.791317e-50	-8.615850e-47
Msa0392490	Msa0795960	0.800122	1.671208e-48	-8.615850e-47
Msa0436500	Msa0795960	0.820402	6.988930e-53	-8.615850e-47
Msa0464540	Msa0795960	0.800923	1.147604e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795960	MtrunA17_Chr5g0399041	95.862	290	8	2	1	286	1	290	0.0	564
Msa0795960	MtrunA17_Chr4g0056461	66.667	291	76	8	1	286	1	275	9.42e-120	344
Msa0795960	MtrunA17_Chr1g0156521	39.614	207	101	7	101	286	198	401	8.17e-36	132
Msa0795960	MtrunA17_Chr3g0114991	37.674	215	100	8	101	285	240	450	9.42e-33	125
Msa0795960	MtrunA17_Chr4g0042091	34.375	224	94	7	101	285	227	436	9.48e-31	119
Msa0795960	MtrunA17_Chr3g0104431	37.963	216	98	7	101	284	176	387	9.87e-30	115
Msa0795960	MtrunA17_Chr2g0280501	31.111	225	99	8	101	285	168	376	1.85e-21	92.8
Msa0795960	MtrunA17_Chr8g0376191	34.118	170	78	8	144	286	4	166	2.36e-15	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795960	AT1G62520.1	55.892	297	103	6	1	286	1	280	1.77e-96	285
Msa0795960	AT4G22560.1	53.425	292	102	9	1	286	1	264	4.42e-88	263
Msa0795960	AT4G12450.1	50.000	300	113	7	1	286	1	277	6.58e-83	251
Msa0795960	AT4G27240.1	40.094	212	99	6	101	285	220	430	6.49e-31	120
Msa0795960	AT5G54630.1	37.156	218	103	6	101	285	255	471	7.55e-30	117
Msa0795960	AT2G29660.1	36.957	230	91	9	101	284	150	371	2.58e-28	112
Msa0795960	AT1G75710.1	32.773	238	102	8	101	286	228	459	8.26e-28	112
Msa0795960	AT4G27240.2	40.000	185	89	5	101	264	220	403	6.22e-24	100

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Find 98 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTGAAAACCCAACCC+GGG	0.661312	5_3:-7973531	Msa0795960:CDS
AACCCGACCCGCAAACGGTT+TGG	0.361036	5_3:+7973615	None:intergenic
AAGGGCTATGTTGGTTTGTC+GGG	0.421378	5_3:-7973305	Msa0795960:CDS
AATGCAAGGTGTGTTGCGGA+TGG	0.588283	5_3:-7973490	Msa0795960:CDS
ACCCAAACCGTTTGCGGGTC+GGG	0.301222	5_3:-7973617	Msa0795960:CDS
ACCCGACCCGCAAACGGTTT+GGG	0.370093	5_3:+7973616	None:intergenic
ACCCGGGTCGAGGAACCATG+AGG	0.720452	5_3:-7973515	Msa0795960:CDS
ACGGCATCGAAATATTATTC+CGG	0.472801	5_3:+7973731	None:intergenic
ACTTCTGGTGGTGGTCCCTA+CGG	0.521381	5_3:-7973433	Msa0795960:CDS
AGAGAAGAGAAACGTGGGTC+CGG	0.483126	5_3:+7973706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAACATCTTCAAATGCTT+TGG	+	chr5_3:7973190-7973209	None:intergenic	30.0%
AGATAATCTTTCACACTAGT+TGG	-	chr5_3:7973496-7973515	Msa0795960:CDS	30.0%
GATAATCTTTCACACTAGTT+GGG	-	chr5_3:7973497-7973516	Msa0795960:CDS	30.0%
ATAATCTTTCACACTAGTTG+GGG	-	chr5_3:7973498-7973517	Msa0795960:CDS	30.0%
GTAAACATCTTCAAATGCTT+TGG	+	chr5_3:7973190-7973209	None:intergenic	30.0%
AGATAATCTTTCACACTAGT+TGG	-	chr5_3:7973496-7973515	Msa0795960:CDS	30.0%
GATAATCTTTCACACTAGTT+GGG	-	chr5_3:7973497-7973516	Msa0795960:CDS	30.0%
ATAATCTTTCACACTAGTTG+GGG	-	chr5_3:7973498-7973517	Msa0795960:CDS	30.0%
TTGAGTTTGTGCTTCTTGAA+CGG	+	chr5_3:7973380-7973399	None:intergenic	35.0%
CATCGAAATATTATTCCGGT+TGG	+	chr5_3:7973406-7973425	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	7973150	7974010	7973150	ID=Msa0795960;Name=Msa0795960
chr5_3	mRNA	7973150	7974010	7973150	ID=Msa0795960-mRNA-1;Parent=Msa0795960;Name=Msa0795960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|286
chr5_3	exon	7973150	7974010	7973150	ID=Msa0795960-mRNA-1:exon:3289;Parent=Msa0795960-mRNA-1
chr5_3	CDS	7973150	7974010	7973150	ID=Msa0795960-mRNA-1:cds;Parent=Msa0795960-mRNA-1

Gene Sequence

>Msa0795960

ATGGCTGGTGGGTGGGTGAAATCATTGCAATGCAAATCCAAAGCATTTGAAGATGTTTACAACCCAAACACAAAAAACAGAATACAAAGTGCAAGTTGTAGAAAAAGTGTTCAAGATATTAAAGATGTTGTAGTTGAAACAACAAAACCTAAATCCAAAAAACCGCTTCAAAAACATCATAGTTCAAGATATTCAACAACAACAACCGATTTTGAAACTACCATAAACCGTTCAAGAAGCACAAACTCAACCACCAACCGGAATAATATTTCGATGCCGTCACCGGACCCACGTTTCTCTTCTCTCACGGAGCTTAATGAAGGTCATCCTTCAAGGAATGTGGTGGAGATAATCTTTCACACTAGTTGGGGACCCAAACCGTTTGCGGGTCGGGTTGAGATGATTTTCAAGGTTCACAATGGTTCAAGAACGGTGACTCGGTTTGAAGAGTATCGCGAAACGGTGAAAACCCAACCCGGGTCGAGGAACCATGAGGAGAATGCAAGGTGTGTTGCGGATGGGAATGAAGTGATGAGGTTTCATTGTTTGGGACCCACTTCTGGTGGTGGTCCCTACGGTGGAGCTTGTGTGGGGTCGTTTCCAGGTGGGAAAGGTTCGGCGGCGATCTGCACATTTTCCGGCAGCGGTGGAGCACATGAGAGTTCCGGTGGTGGTAGAGGAAGAAGGGCTATGTTGGTTTGTCGGGTCATAGCGGGTAGGGTTTCGAAGCGGGTAGGGTTTGTGGATTCGTTGTTGGATGGACGAGTTGGGATTGACTCGGTGAGTGGTGATAATGGTGAGTTGTTGGTTTTTGACTCGCGTGCTGTTTTGCCTTGTTTTCTTATCATTTATAGGTTGTAA

Protein sequence

>Msa0795960

MAGGWVKSLQCKSKAFEDVYNPNTKNRIQSASCRKSVQDIKDVVVETTKPKSKKPLQKHHSSRYSTTTTDFETTINRSRSTNSTTNRNNISMPSPDPRFSSLTELNEGHPSRNVVEIIFHTSWGPKPFAGRVEMIFKVHNGSRTVTRFEEYRETVKTQPGSRNHEENARCVADGNEVMRFHCLGPTSGGGPYGGACVGSFPGGKGSAAICTFSGSGGAHESSGGGRGRRAMLVCRVIAGRVSKRVGFVDSLLDGRVGIDSVSGDNGELLVFDSRAVLPCFLIIYRL*