AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1142670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142670 MtrunA17_Chr7g0223171 92.727 55 4 0 1 55 1 55 1.65e-32 105
Msa1142670 MtrunA17_Chr8g0376211 82.692 52 9 0 1 52 1 52 1.64e-28 95.5
Msa1142670 MtrunA17_Chr8g0376251 82.692 52 9 0 1 52 1 52 1.64e-28 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142670 AT1G06515.1 63.636 55 16 1 1 51 1 55 1.14e-18 71.2
Msa1142670 AT1G06515.2 63.636 55 16 1 1 51 1 55 1.14e-18 71.2
Msa1142670 AT2G30942.1 58.182 55 19 1 1 51 1 55 1.27e-16 66.2

Find 27 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAAGCTGTCAAAATAAT+TGG 0.107007 7_4:-17313200 Msa1142670:three_prime_UTR
CTTAACTATTACAGATATTT+TGG 0.137656 7_4:-17314481 Msa1142670:intron
CACCTTTACAATGTTACTTT+TGG 0.153503 7_4:-17314803 Msa1142670:CDS
ATATTCATACATAAAGATTT+TGG 0.176855 7_4:+17312999 None:intergenic
TGTCTTGTAGCAGTTTGATA+TGG 0.308269 7_4:-17313240 Msa1142670:three_prime_UTR
TGAACTACCTGTTGAAGAAC+TGG 0.347949 7_4:+17314421 None:intergenic
TTAAAGCTGTCAAAATAATT+GGG 0.384078 7_4:-17313199 Msa1142670:three_prime_UTR
GGCTTTATATGCTGGATTGG+TGG 0.387109 7_4:-17314781 Msa1142670:CDS
CAGTTGTGGAAGTCATGAAT+TGG 0.399034 7_4:-17314841 Msa1142670:exon
AAAAGTTGAATGTGGAAGGT+TGG 0.407636 7_4:-17312940 Msa1142670:three_prime_UTR
TTGGGCTTTATATGCTGGAT+TGG 0.428670 7_4:-17314784 Msa1142670:CDS
GCTTTATATGCTGGATTGGT+GGG 0.445941 7_4:-17314780 Msa1142670:CDS
CATGAATTGGGTTCAGCAAA+AGG 0.457099 7_4:-17314828 Msa1142670:CDS
AGTTGCAGCAGTGGTGTGTT+TGG 0.458970 7_4:-17313291 Msa1142670:three_prime_UTR
ACATTACCCAGTTCTTCAAC+AGG 0.469079 7_4:-17314428 Msa1142670:intron
AAATCTCATGCGATCGCACC+AGG 0.500256 7_4:-17317283 Msa1142670:intron
CTTTAAGAAACTCTCAAAGT+TGG 0.514220 7_4:+17313216 None:intergenic
TATTTAAATAAGATTCATGA+TGG 0.523065 7_4:+17313156 None:intergenic
GCCCAAAAGTAACATTGTAA+AGG 0.523226 7_4:+17314801 None:intergenic
ATTAAAATTAGTTGCAGCAG+TGG 0.523363 7_4:-17313300 Msa1142670:three_prime_UTR
ATATAAATGTCACGTATCTC+CGG 0.525981 7_4:-17313376 Msa1142670:exon
AGTTGTGGAAGTCATGAATT+GGG 0.531926 7_4:-17314840 Msa1142670:exon
AAAGACGACTACATTGAAGC+TGG 0.589609 7_4:+17313067 None:intergenic
CAAAAGTAACATTGTAAAGG+TGG 0.589878 7_4:+17314804 None:intergenic
CCTCAAGTGAAGATCTACAT+TGG 0.603290 7_4:+17313323 None:intergenic
CCAATGTAGATCTTCACTTG+AGG 0.621901 7_4:-17313323 Msa1142670:three_prime_UTR
GAACTACCTGTTGAAGAACT+GGG 0.650365 7_4:+17314422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTCTTTTATGTTATT+TGG - chr7_4:17313440-17313459 Msa1142670:intron 10.0%
!!! ATAGTTTTTGTAATTTAAGT+TGG - chr7_4:17314155-17314174 Msa1142670:intron 15.0%
!!! TAGTTTTTGTAATTTAAGTT+GGG - chr7_4:17314156-17314175 Msa1142670:intron 15.0%
!! AAAATGTTATTCCATTTATT+AGG + chr7_4:17314421-17314440 None:intergenic 15.0%
!! ATTAAGTATTTGTACTTTAA+CGG - chr7_4:17314453-17314472 Msa1142670:CDS 15.0%
!!! TTGATAATAAAAACTATATG+TGG + chr7_4:17314519-17314538 None:intergenic 15.0%
!! AGTTATTATTTAACATAACT+AGG - chr7_4:17314685-17314704 Msa1142670:intron 15.0%
!! TATGTGAGATAATATTAATA+AGG - chr7_4:17315432-17315451 Msa1142670:intron 15.0%
!!! ACTGCAAAAAATATAATTTT+GGG + chr7_4:17315550-17315569 None:intergenic 15.0%
!!! AACTGCAAAAAATATAATTT+TGG + chr7_4:17315551-17315570 None:intergenic 15.0%
!! TATAGGATAATAAACTATTA+AGG + chr7_4:17316723-17316742 None:intergenic 15.0%
!! ATAATTTAAGAAAATGAAAG+TGG + chr7_4:17316846-17316865 None:intergenic 15.0%
!!! TCATTTTCTTAAATTATTAC+CGG - chr7_4:17316849-17316868 Msa1142670:intron 15.0%
!! TATTTAAATAAGATTCATGA+TGG + chr7_4:17317254-17317273 None:intergenic 15.0%
!!! ATATTCATACATAAAGATTT+TGG + chr7_4:17317411-17317430 None:intergenic 15.0%
!!! ATTATTTGTTGTTTTGTTGA+TGG + chr7_4:17312935-17312954 None:intergenic 20.0%
!! AATGTTTGTTTGATACAAAA+TGG - chr7_4:17313330-17313349 Msa1142670:three_prime_UTR 20.0%
!! ACAAATTACAGAATGAAAAA+TGG - chr7_4:17313656-17313675 Msa1142670:intron 20.0%
!!! TTTAAAACTATTGTTTTTGC+AGG + chr7_4:17313800-17313819 None:intergenic 20.0%
!! GAAAATATCACATCTAATAA+GGG + chr7_4:17314045-17314064 None:intergenic 20.0%
!! AGAAAATATCACATCTAATA+AGG + chr7_4:17314046-17314065 None:intergenic 20.0%
!!! ATTAGATGTGATATTTTCTT+AGG - chr7_4:17314047-17314066 Msa1142670:intron 20.0%
!! GAGTAATGAACATAATTAAA+AGG + chr7_4:17314311-17314330 None:intergenic 20.0%
!!! TTACTCTTTGATTTTGTAAT+TGG - chr7_4:17314325-17314344 Msa1142670:intron 20.0%
!! TAAAGTACAAATACTTAATG+AGG + chr7_4:17314452-17314471 None:intergenic 20.0%
!! AAGAATATATTCAAGAACTT+AGG - chr7_4:17314617-17314636 Msa1142670:intron 20.0%
!!! TGTTATTTTTTCCATTAGTT+GGG + chr7_4:17315200-17315219 None:intergenic 20.0%
!!! ATGTTATTTTTTCCATTAGT+TGG + chr7_4:17315201-17315220 None:intergenic 20.0%
!!! CTGCAAAAAATATAATTTTG+GGG + chr7_4:17315549-17315568 None:intergenic 20.0%
!!! AATTATATTTTTTGCAGTTG+TGG - chr7_4:17315552-17315571 Msa1142670:intron 20.0%
!! ACCATGTTAGTTATTTATAT+AGG - chr7_4:17315750-17315769 Msa1142670:intron 20.0%
!! CCATGTTAGTTATTTATATA+GGG - chr7_4:17315751-17315770 Msa1142670:intron 20.0%
!! CAAAATATCTGTAATAGTTA+AGG + chr7_4:17315928-17315947 None:intergenic 20.0%
!!! CTTAACTATTACAGATATTT+TGG - chr7_4:17315926-17315945 Msa1142670:intron 20.0%
!!! ATATGAATTTTGTAATACCA+AGG - chr7_4:17316127-17316146 Msa1142670:intron 20.0%
!! TGAAAGTAAATGTAAATAGT+AGG - chr7_4:17316514-17316533 Msa1142670:intron 20.0%
!! TTAAAGCTGTCAAAATAATT+GGG - chr7_4:17317208-17317227 Msa1142670:intron 20.0%
!!! TCAGTTCATATTCATATTTT+TGG - chr7_4:17317439-17317458 Msa1142670:five_prime_UTR 20.0%
!!! AATCTTTCTTTTTCACTTCA+CGG - chr7_4:17313002-17313021 Msa1142670:three_prime_UTR 25.0%
! TCCAAAAAATGTTGAATGAT+CGG + chr7_4:17313098-17313117 None:intergenic 25.0%
! GAAATGAAGTCATATATGTT+TGG - chr7_4:17313766-17313785 Msa1142670:intron 25.0%
!! AGAAAATGATATGTTTCTGT+CGG - chr7_4:17314017-17314036 Msa1142670:intron 25.0%
!!! TTGTAATTGTTTCTACTAAC+TGG + chr7_4:17314122-17314141 None:intergenic 25.0%
! ATTAAGACTTCTTTCTGAAT+TGG - chr7_4:17314265-17314284 Msa1142670:intron 25.0%
! ATATTCAAGAACTTAGGATT+TGG - chr7_4:17314623-17314642 Msa1142670:intron 25.0%
! TTAACATAACTAGGTGTATT+TGG - chr7_4:17314694-17314713 Msa1142670:intron 25.0%
!! CAGTTTCAACAATTTTTGAT+TGG + chr7_4:17314768-17314787 None:intergenic 25.0%
! AAATATCACGTCAAATAAGA+GGG + chr7_4:17314813-17314832 None:intergenic 25.0%
! AAAATATCACGTCAAATAAG+AGG + chr7_4:17314814-17314833 None:intergenic 25.0%
!!! TTGAGTAGTCTTTAACTTTT+AGG - chr7_4:17315319-17315338 Msa1142670:intron 25.0%
! TTATGCGTTTCTATATATAC+TGG - chr7_4:17315486-17315505 Msa1142670:intron 25.0%
! GGGTCATAATCTTAATATAA+AGG + chr7_4:17315529-17315548 None:intergenic 25.0%
!!! ACCTTTACAATGTTACTTTT+GGG - chr7_4:17315605-17315624 Msa1142670:intron 25.0%
!!! ACATTTTAAGATAACTACGA+AGG + chr7_4:17315723-17315742 None:intergenic 25.0%
! CCCTATATAAATAACTAACA+TGG + chr7_4:17315754-17315773 None:intergenic 25.0%
! ATTTACATTTCTCACTATGT+TGG - chr7_4:17316184-17316203 Msa1142670:intron 25.0%
!! AGAAACATCATTTGTTAAGA+CGG + chr7_4:17316248-17316267 None:intergenic 25.0%
! AGTCAATACACAAATGTAAA+TGG + chr7_4:17316280-17316299 None:intergenic 25.0%
! ATGATATTTCCTTATTGTTC+AGG + chr7_4:17316372-17316391 None:intergenic 25.0%
! ATCATTGTAAACTATAGTTC+AGG - chr7_4:17316387-17316406 Msa1142670:intron 25.0%
! CTTCATTTACATTTACATAC+AGG + chr7_4:17316564-17316583 None:intergenic 25.0%
! ACTATTAAGGATATAAGATC+CGG + chr7_4:17316710-17316729 None:intergenic 25.0%
! AATAATACACACTTCAGATA+GGG + chr7_4:17316985-17317004 None:intergenic 25.0%
! AAATAATACACACTTCAGAT+AGG + chr7_4:17316986-17317005 None:intergenic 25.0%
! GTGTGTATTATTTAAATGTC+AGG - chr7_4:17316993-17317012 Msa1142670:intron 25.0%
! CTTAAAGCTGTCAAAATAAT+TGG - chr7_4:17317207-17317226 Msa1142670:intron 25.0%
! AACACTTAACAATGAAAAAC+AGG + chr7_4:17317296-17317315 None:intergenic 25.0%
!!! TGGTTTTAAAAAGTTGAATG+TGG - chr7_4:17317459-17317478 Msa1142670:five_prime_UTR 25.0%
! TTTAAAAAGTTGAATGTGGA+AGG - chr7_4:17317463-17317482 Msa1142670:five_prime_UTR 25.0%
!! ATCTTTCTTTTTCACTTCAC+GGG - chr7_4:17313003-17313022 Msa1142670:three_prime_UTR 30.0%
!!! ACCGATCATTCAACATTTTT+TGG - chr7_4:17313094-17313113 Msa1142670:three_prime_UTR 30.0%
TCTAGCTGAAATCCAAATTT+AGG - chr7_4:17313599-17313618 Msa1142670:intron 30.0%
CTAGCTGAAATCCAAATTTA+GGG - chr7_4:17313600-17313619 Msa1142670:intron 30.0%
! TGGATTTTGTGAATGTGAAA+CGG - chr7_4:17313676-17313695 Msa1142670:intron 30.0%
AACCCAACATAAACAATGAT+TGG - chr7_4:17313818-17313837 Msa1142670:intron 30.0%
CTCCAATCATTGTTTATGTT+GGG + chr7_4:17313823-17313842 None:intergenic 30.0%
TGTCTTAATAAGTGCATGTT+TGG + chr7_4:17313929-17313948 None:intergenic 30.0%
GAAACAATTACAAGCATCAA+AGG - chr7_4:17314129-17314148 Msa1142670:intron 30.0%
TGAATTGGTATTAACTTAGC+TGG - chr7_4:17314280-17314299 Msa1142670:intron 30.0%
TAGGCATAAGCTGTAAAATA+TGG + chr7_4:17314402-17314421 None:intergenic 30.0%
TACAGCTTATGCCTAATAAA+TGG - chr7_4:17314407-17314426 Msa1142670:intron 30.0%
ATCAAACATGACATGTCTTT+AGG - chr7_4:17314534-17314553 Msa1142670:intron 30.0%
! TGTTAAGTGTTTCTACTATC+TGG + chr7_4:17314896-17314915 None:intergenic 30.0%
! ACATCAAATGTGCTTAGTTT+TGG - chr7_4:17314916-17314935 Msa1142670:intron 30.0%
!!! TTAGTTTTGGAGTTCAAGTT+GGG - chr7_4:17314929-17314948 Msa1142670:intron 30.0%
!! AGCTAATCAACTACTTTTGT+CGG + chr7_4:17314972-17314991 None:intergenic 30.0%
! GTAGTTGATTAGCTCTTAAA+TGG - chr7_4:17314978-17314997 Msa1142670:intron 30.0%
AGCAATCATATATAGAATCC+AGG + chr7_4:17315005-17315024 None:intergenic 30.0%
TGCTATTGAGAATTCAAATC+AGG - chr7_4:17315021-17315040 Msa1142670:intron 30.0%
TTGTATCCATCATTAATGCA+TGG - chr7_4:17315368-17315387 Msa1142670:intron 30.0%
CAAAAGTAACATTGTAAAGG+TGG + chr7_4:17315606-17315625 None:intergenic 30.0%
!!! CACCTTTACAATGTTACTTT+TGG - chr7_4:17315604-17315623 Msa1142670:intron 30.0%
TGTAGGAGAAAGTGAAATAA+AGG + chr7_4:17315672-17315691 None:intergenic 30.0%
AACAAAGAGATGAATGAGAA+GGG + chr7_4:17316018-17316037 None:intergenic 30.0%
AAACAAAGAGATGAATGAGA+AGG + chr7_4:17316019-17316038 None:intergenic 30.0%
! TCATTCATCTCTTTGTTTAG+TGG - chr7_4:17316021-17316040 Msa1142670:intron 30.0%
! TCTTTGTTTAGTGGCATAAA+TGG - chr7_4:17316030-17316049 Msa1142670:intron 30.0%
AATGCATGTGTGTTAAGTAA+TGG + chr7_4:17316067-17316086 None:intergenic 30.0%
! TAACACACATGCATTTTTAC+TGG - chr7_4:17316072-17316091 Msa1142670:intron 30.0%
! TGCATGTTAAGTATTTTCCT+TGG + chr7_4:17316147-17316166 None:intergenic 30.0%
!! GGGGAGTTCTAATTTTATAT+AGG + chr7_4:17316227-17316246 None:intergenic 30.0%
! AAACATCATTTGTTAAGACG+GGG + chr7_4:17316246-17316265 None:intergenic 30.0%
! GAAACATCATTTGTTAAGAC+GGG + chr7_4:17316247-17316266 None:intergenic 30.0%
ACGAATAGGCAAGATATAAA+AGG + chr7_4:17316343-17316362 None:intergenic 30.0%
GATTATAAGGGATCTTAGAA+TGG + chr7_4:17316450-17316469 None:intergenic 30.0%
TGCTACTGCTAAGATTATAA+GGG + chr7_4:17316462-17316481 None:intergenic 30.0%
ATGCTACTGCTAAGATTATA+AGG + chr7_4:17316463-17316482 None:intergenic 30.0%
CTTAAATACTCGAGCATAAT+TGG + chr7_4:17316486-17316505 None:intergenic 30.0%
TGCTTGTGTTAAATAGGTAT+AGG + chr7_4:17316740-17316759 None:intergenic 30.0%
! TTGAAGTGCTTGTGTTAAAT+AGG + chr7_4:17316746-17316765 None:intergenic 30.0%
AACACAAGCACTTCAATTAA+AGG - chr7_4:17316750-17316769 Msa1142670:intron 30.0%
GTTATGTGTCATGTTAGTAT+CGG + chr7_4:17316805-17316824 None:intergenic 30.0%
ATAATACACACTTCAGATAG+GGG + chr7_4:17316984-17317003 None:intergenic 30.0%
ATATAAATGTCACGTATCTC+CGG - chr7_4:17317031-17317050 Msa1142670:intron 30.0%
ATTAAAATTAGTTGCAGCAG+TGG - chr7_4:17317107-17317126 Msa1142670:intron 30.0%
! CTTTAAGAAACTCTCAAAGT+TGG + chr7_4:17317194-17317213 None:intergenic 30.0%
ATCAACCGAAATTTCTACGA+AGG - chr7_4:17313279-17313298 Msa1142670:three_prime_UTR 35.0%
TCAACCGAAATTTCTACGAA+GGG - chr7_4:17313280-17313299 Msa1142670:three_prime_UTR 35.0%
TCAACCCTTCGTAGAAATTT+CGG + chr7_4:17313287-17313306 None:intergenic 35.0%
GAAATTAAAGTGATCGCAGT+GGG + chr7_4:17313414-17313433 None:intergenic 35.0%
AGAAATTAAAGTGATCGCAG+TGG + chr7_4:17313415-17313434 None:intergenic 35.0%
AAAGTAAGTAAAGTCTAGCC+AGG + chr7_4:17313580-17313599 None:intergenic 35.0%
!! AAACGGAAGTGTTTGTATGT+AGG - chr7_4:17313693-17313712 Msa1142670:intron 35.0%
CCTCCAATCATTGTTTATGT+TGG + chr7_4:17313824-17313843 None:intergenic 35.0%
CCAACATAAACAATGATTGG+AGG - chr7_4:17313821-17313840 Msa1142670:intron 35.0%
ACTGAACGAAAGGTCAAAAT+AGG + chr7_4:17313902-17313921 None:intergenic 35.0%
TAGCTGCTTACATGGATAAT+GGG + chr7_4:17313978-17313997 None:intergenic 35.0%
TTCTTTACTAGCTGCTTACA+TGG + chr7_4:17313986-17314005 None:intergenic 35.0%
TATTATCTCCAAAACTGTCC+TGG - chr7_4:17314212-17314231 Msa1142670:intron 35.0%
TAACGGAGATTCATATACTC+CGG - chr7_4:17314470-17314489 Msa1142670:CDS 35.0%
AACATGACATGTCTTTAGGT+CGG - chr7_4:17314538-17314557 Msa1142670:intron 35.0%
TTTCAGATTCAGATGCATGA+TGG + chr7_4:17314598-17314617 None:intergenic 35.0%
GATTTGGCTGTTCTTGATTA+AGG - chr7_4:17314639-17314658 Msa1142670:intron 35.0%
TGGCTGCTTCACTAAAATTA+TGG + chr7_4:17314748-17314767 None:intergenic 35.0%
!!! CTTAGTTTTGGAGTTCAAGT+TGG - chr7_4:17314928-17314947 Msa1142670:intron 35.0%
AAGCTGTAAAGTATGGTCTA+TGG + chr7_4:17315174-17315193 None:intergenic 35.0%
ATCATTAATGCATGGCTTGA+GGG - chr7_4:17315376-17315395 Msa1142670:intron 35.0%
AGTTGTGGAAGTCATGAATT+GGG - chr7_4:17315567-17315586 Msa1142670:intron 35.0%
GCCCAAAAGTAACATTGTAA+AGG + chr7_4:17315609-17315628 None:intergenic 35.0%
!! TACTTTTGGGCTTTATATGC+TGG - chr7_4:17315618-17315637 Msa1142670:intron 35.0%
GAAGGAGTCAAAATCTATGT+AGG + chr7_4:17315689-17315708 None:intergenic 35.0%
! TACTGATGTGTTTTGTAGTG+CGG - chr7_4:17315955-17315974 Msa1142670:intron 35.0%
TACATTTCTCACTATGTTGG+TGG - chr7_4:17316187-17316206 Msa1142670:intron 35.0%
!! TGTTCAGGTTTTTGACGAAT+AGG + chr7_4:17316357-17316376 None:intergenic 35.0%
CGTCAAAAACCTGAACAATA+AGG - chr7_4:17316360-17316379 Msa1142670:intron 35.0%
TTGCGTAATACAACAGTGTT+GGG + chr7_4:17316423-17316442 None:intergenic 35.0%
! TTTTCAAAACCATACCAGAC+CGG - chr7_4:17316688-17316707 Msa1142670:intron 35.0%
TAATACACACTTCAGATAGG+GGG + chr7_4:17316983-17317002 None:intergenic 35.0%
! GAGAATGATTTTGCTTCTAC+CGG + chr7_4:17317053-17317072 None:intergenic 35.0%
TGTCTTGTAGCAGTTTGATA+TGG - chr7_4:17317167-17317186 Msa1142670:intron 35.0%
AAAAGTTGAATGTGGAAGGT+TGG - chr7_4:17317467-17317486 Msa1142670:five_prime_UTR 35.0%
GATACAAAATGGTCGCATAG+CGG - chr7_4:17313341-17313360 Msa1142670:three_prime_UTR 40.0%
ATCCTTGACTGAAACAATCC+TGG - chr7_4:17313559-17313578 Msa1142670:intron 40.0%
ACCCTCTGATATCTAGGAAA+GGG + chr7_4:17313627-17313646 None:intergenic 40.0%
AACCCTCTGATATCTAGGAA+AGG + chr7_4:17313628-17313647 None:intergenic 40.0%
GTCTTAACCCTCTGATATCT+AGG + chr7_4:17313633-17313652 None:intergenic 40.0%
!! ACATGGATAATGGGAGAATG+AGG + chr7_4:17313969-17313988 None:intergenic 40.0%
CTAGCTGCTTACATGGATAA+TGG + chr7_4:17313979-17313998 None:intergenic 40.0%
! TACACAATCCAGGACAGTTT+TGG + chr7_4:17314223-17314242 None:intergenic 40.0%
AGCGATCTTATACACAATCC+AGG + chr7_4:17314233-17314252 None:intergenic 40.0%
AACGGAGATTCATATACTCC+GGG - chr7_4:17314471-17314490 Msa1142670:intron 40.0%
! ATATGTGGCAGACTTGCTTA+GGG + chr7_4:17314504-17314523 None:intergenic 40.0%
! TATATGTGGCAGACTTGCTT+AGG + chr7_4:17314505-17314524 None:intergenic 40.0%
ACATGACATGTCTTTAGGTC+GGG - chr7_4:17314539-17314558 Msa1142670:intron 40.0%
! GATTAGCTCTTAAATGGTCC+TGG - chr7_4:17314984-17315003 Msa1142670:intron 40.0%
TGAATTGCGATTCACTTAGC+TGG - chr7_4:17315053-17315072 Msa1142670:intron 40.0%
CTGGTCTAACTACTTTATCC+TGG - chr7_4:17315072-17315091 Msa1142670:intron 40.0%
AAACAAAAGAGTAGCGAACC+AGG + chr7_4:17315093-17315112 None:intergenic 40.0%
TGGGCATAAGCTGTAAAGTA+TGG + chr7_4:17315181-17315200 None:intergenic 40.0%
TACAGCTTATGCCCAACTAA+TGG - chr7_4:17315186-17315205 Msa1142670:intron 40.0%
CTCAAGCCATGCATTAATGA+TGG + chr7_4:17315377-17315396 None:intergenic 40.0%
CATCATTAATGCATGGCTTG+AGG - chr7_4:17315375-17315394 Msa1142670:intron 40.0%
CAGTTGTGGAAGTCATGAAT+TGG - chr7_4:17315566-17315585 Msa1142670:intron 40.0%
CATGAATTGGGTTCAGCAAA+AGG - chr7_4:17315579-17315598 Msa1142670:intron 40.0%
! TTGGGCTTTATATGCTGGAT+TGG - chr7_4:17315623-17315642 Msa1142670:intron 40.0%
!! GCTTTATATGCTGGATTGGT+GGG - chr7_4:17315627-17315646 Msa1142670:intron 40.0%
ACGAAGGAAAAGACATCTGA+AGG + chr7_4:17315707-17315726 None:intergenic 40.0%
ACATTACCCAGTTCTTCAAC+AGG - chr7_4:17315979-17315998 Msa1142670:intron 40.0%
GAACTACCTGTTGAAGAACT+GGG + chr7_4:17315988-17316007 None:intergenic 40.0%
TGAACTACCTGTTGAAGAAC+TGG + chr7_4:17315989-17316008 None:intergenic 40.0%
GTTGCGTAATACAACAGTGT+TGG + chr7_4:17316424-17316443 None:intergenic 40.0%
ATATAAGATCCGGTCTGGTA+TGG + chr7_4:17316700-17316719 None:intergenic 40.0%
TAAGGATATAAGATCCGGTC+TGG + chr7_4:17316705-17316724 None:intergenic 40.0%
!! ACTTCAATTAAAGGCGTCTC+TGG - chr7_4:17316759-17316778 Msa1142670:intron 40.0%
CAACACTAACACGTAAACAC+CGG + chr7_4:17316871-17316890 None:intergenic 40.0%
TTACGTGTTAGTGTTGTGCT+TGG - chr7_4:17316875-17316894 Msa1142670:intron 40.0%
CCTCAAGTGAAGATCTACAT+TGG + chr7_4:17317087-17317106 None:intergenic 40.0%
CCAATGTAGATCTTCACTTG+AGG - chr7_4:17317084-17317103 Msa1142670:intron 40.0%
AAAGACGACTACATTGAAGC+TGG + chr7_4:17317343-17317362 None:intergenic 40.0%
GCGTTAGACTCCGAATCTAA+AGG - chr7_4:17313374-17313393 Msa1142670:exon 45.0%
ACTCCGAATCTAAAGGTCGT+GGG - chr7_4:17313381-17313400 Msa1142670:exon 45.0%
GAACCCACGACCTTTAGATT+CGG + chr7_4:17313387-17313406 None:intergenic 45.0%
AGCCAGGATTGTTTCAGTCA+AGG + chr7_4:17313564-17313583 None:intergenic 45.0%
TAGGAAAGGGGCCCTAAATT+TGG + chr7_4:17313614-17313633 None:intergenic 45.0%
CCCTCTGATATCTAGGAAAG+GGG + chr7_4:17313626-17313645 None:intergenic 45.0%
CCCCTTTCCTAGATATCAGA+GGG - chr7_4:17313623-17313642 Msa1142670:intron 45.0%
GTTTGGATGCACTGAACGAA+AGG + chr7_4:17313912-17313931 None:intergenic 45.0%
ATTTAAGCGAGCTGCAGCTT+AGG + chr7_4:17314367-17314386 None:intergenic 45.0%
!! TGGAGTTCAAGTTGGGTGTT+AGG - chr7_4:17314936-17314955 Msa1142670:intron 45.0%
GATCAGACTACTTGGGAATG+AGG + chr7_4:17315235-17315254 None:intergenic 45.0%
CCATCTGGATCAGACTACTT+GGG + chr7_4:17315242-17315261 None:intergenic 45.0%
ACCATCTGGATCAGACTACT+TGG + chr7_4:17315243-17315262 None:intergenic 45.0%
AGTCTGATCCAGATGGTGAT+TGG - chr7_4:17315246-17315265 Msa1142670:intron 45.0%
TAGACACACCAATCACCATC+TGG + chr7_4:17315257-17315276 None:intergenic 45.0%
! GGCTTTATATGCTGGATTGG+TGG - chr7_4:17315626-17315645 Msa1142670:intron 45.0%
AAATCTCATGCGATCGCACC+AGG - chr7_4:17313124-17313143 Msa1142670:three_prime_UTR 50.0%
! AAAATGGTCGCATAGCGGAG+TGG - chr7_4:17313346-17313365 Msa1142670:three_prime_UTR 50.0%
GACTCCGAATCTAAAGGTCG+TGG - chr7_4:17313380-17313399 Msa1142670:exon 50.0%
GCCCCTTTCCTAGATATCAG+AGG - chr7_4:17313622-17313641 Msa1142670:intron 50.0%
CCCAAGTAGTCTGATCCAGA+TGG - chr7_4:17315239-17315258 Msa1142670:intron 50.0%
!! TGTGCTTGGTGTCAGACTGT+CGG - chr7_4:17316889-17316908 Msa1142670:intron 50.0%
AGTTGCAGCAGTGGTGTGTT+TGG - chr7_4:17317116-17317135 Msa1142670:intron 50.0%
CTTGCTTAGGGCAACAGACC+CGG + chr7_4:17314492-17314511 None:intergenic 55.0%
!! GGTGTCAGACTGTCGGTTCT+TGG - chr7_4:17316896-17316915 Msa1142670:intron 55.0%
TGATCGCGTGCGTGCGTACC+TGG + chr7_4:17313145-17313164 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 17312930 17317499 17312930 ID=Msa1142670;Name=Msa1142670
chr7_4 mRNA 17312930 17317499 17312930 ID=Msa1142670-mRNA-1;Parent=Msa1142670;Name=Msa1142670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=227|1|1|1|0|0|4|463|55
chr7_4 exon 17312930 17313414 17312930 ID=Msa1142670-mRNA-1:exon:3875;Parent=Msa1142670-mRNA-1
chr7_4 exon 17314429 17314489 17314429 ID=Msa1142670-mRNA-1:exon:3874;Parent=Msa1142670-mRNA-1
chr7_4 exon 17314765 17314860 17314765 ID=Msa1142670-mRNA-1:exon:3873;Parent=Msa1142670-mRNA-1
chr7_4 exon 17317284 17317499 17317284 ID=Msa1142670-mRNA-1:exon:3872;Parent=Msa1142670-mRNA-1
chr7_4 five_prime_UTR 17317284 17317499 17317284 ID=Msa1142670-mRNA-1:five_prime_utr;Parent=Msa1142670-mRNA-1
chr7_4 five_prime_UTR 17314850 17314860 17314850 ID=Msa1142670-mRNA-1:five_prime_utr;Parent=Msa1142670-mRNA-1
chr7_4 CDS 17314765 17314849 17314765 ID=Msa1142670-mRNA-1:cds;Parent=Msa1142670-mRNA-1
chr7_4 CDS 17314429 17314489 17314429 ID=Msa1142670-mRNA-1:cds;Parent=Msa1142670-mRNA-1
chr7_4 CDS 17313393 17313414 17313393 ID=Msa1142670-mRNA-1:cds;Parent=Msa1142670-mRNA-1
chr7_4 three_prime_UTR 17312930 17313392 17312930 ID=Msa1142670-mRNA-1:three_prime_utr;Parent=Msa1142670-mRNA-1
Gene Sequence

>Msa1142670

ATGAATTGGGTTCAGCAAAAGGTCCACCTTTACAATGTTACTTTTGGGCTTTATATGCTGGATTGGTGGGAGCGTTGCTCATTCAATATTTTGGTGATTGTACTGATGTGTTTTGTAGTGCGGTACATTACCCAGTTCTTCAACAGGTATATATTTTGTATTATATAA

Protein sequence

>Msa1142670

MNWVQQKVHLYNVTFGLYMLDWWERCSFNILVIVLMCFVVRYITQFFNRYIFCII*