Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331080 | sp|Q6L4S3|HIRL1_ORYSJ | 88.554 | 166 | 19 | 0 | 19 | 184 | 1 | 166 | 2.84e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331080 | G7JPW9 | 94.706 | 170 | 9 | 0 | 16 | 185 | 58 | 227 | 1.23e-114 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa1331080 | 0.826623 | 2.450533e-54 | -8.615850e-47 |
| Msa0081650 | Msa1331080 | 0.811509 | 6.755441e-51 | -8.615850e-47 |
| Msa0089820 | Msa1331080 | 0.819378 | 1.198252e-52 | -8.615850e-47 |
| Msa0103250 | Msa1331080 | 0.806306 | 8.771994e-50 | -8.615850e-47 |
| Msa0109590 | Msa1331080 | 0.806308 | 8.761155e-50 | -8.615850e-47 |
| Msa0118540 | Msa1331080 | 0.822102 | 2.834334e-53 | -8.615850e-47 |
| Msa0602980 | Msa1331080 | 0.829740 | 4.347243e-55 | -8.615850e-47 |
| Msa0610130 | Msa1331080 | 0.832229 | 1.064615e-55 | -8.615850e-47 |
| Msa0610180 | Msa1331080 | 0.813869 | 2.057109e-51 | -8.615850e-47 |
| Msa0613340 | Msa1331080 | 0.822177 | 2.723139e-53 | -8.615850e-47 |
| Msa0643320 | Msa1331080 | 0.814965 | 1.177308e-51 | -8.615850e-47 |
| Msa0667740 | Msa1331080 | 0.830549 | 2.759166e-55 | -8.615850e-47 |
| Msa0683600 | Msa1331080 | 0.813062 | 3.095067e-51 | -8.615850e-47 |
| Msa0689780 | Msa1331080 | 0.838823 | 2.287087e-57 | -8.615850e-47 |
| Msa0703910 | Msa1331080 | 0.831842 | 1.327509e-55 | -8.615850e-47 |
| Msa0705190 | Msa1331080 | 0.801768 | 7.705856e-49 | -8.615850e-47 |
| Msa0705990 | Msa1331080 | 0.811348 | 7.324430e-51 | -8.615850e-47 |
| Msa0711150 | Msa1331080 | 0.847125 | 1.409672e-59 | -8.615850e-47 |
| Msa0715410 | Msa1331080 | 0.808069 | 3.711943e-50 | -8.615850e-47 |
| Msa0750850 | Msa1331080 | 0.809778 | 1.599208e-50 | -8.615850e-47 |
| Msa0760350 | Msa1331080 | 0.809305 | 2.020294e-50 | -8.615850e-47 |
| Msa0801730 | Msa1331080 | 0.809657 | 1.698263e-50 | -8.615850e-47 |
| Msa0804810 | Msa1331080 | 0.809169 | 2.161098e-50 | -8.615850e-47 |
| Msa0817460 | Msa1331080 | 0.808463 | 3.059520e-50 | -8.615850e-47 |
| Msa0826150 | Msa1331080 | 0.806431 | 8.254528e-50 | -8.615850e-47 |
| Msa0830230 | Msa1331080 | 0.823478 | 1.355824e-53 | -8.615850e-47 |
| Msa0831850 | Msa1331080 | 0.802333 | 5.895506e-49 | -8.615850e-47 |
| Msa0130720 | Msa1331080 | 0.801396 | 9.184657e-49 | -8.615850e-47 |
| Msa0138020 | Msa1331080 | 0.803435 | 3.490666e-49 | -8.615850e-47 |
| Msa0150990 | Msa1331080 | 0.800368 | 1.489372e-48 | -8.615850e-47 |
| Msa0167980 | Msa1331080 | 0.804788 | 1.825473e-49 | -8.615850e-47 |
| Msa0183850 | Msa1331080 | 0.816410 | 5.610044e-52 | -8.615850e-47 |
| Msa0187830 | Msa1331080 | 0.811407 | 7.109568e-51 | -8.615850e-47 |
| Msa0204960 | Msa1331080 | 0.808642 | 2.801001e-50 | -8.615850e-47 |
| Msa0217700 | Msa1331080 | 0.811102 | 8.279186e-51 | -8.615850e-47 |
| Msa0233370 | Msa1331080 | 0.829085 | 6.269229e-55 | -8.615850e-47 |
| Msa1227730 | Msa1331080 | 0.806325 | 8.689998e-50 | -8.615850e-47 |
| Msa1231840 | Msa1331080 | 0.806908 | 6.543963e-50 | -8.615850e-47 |
| Msa1265590 | Msa1331080 | 0.818559 | 1.839847e-52 | -8.615850e-47 |
| Msa1270660 | Msa1331080 | 0.826445 | 2.702928e-54 | -8.615850e-47 |
| Msa1270730 | Msa1331080 | 0.819840 | 9.402216e-53 | -8.615850e-47 |
| Msa1276340 | Msa1331080 | 0.811173 | 7.993714e-51 | -8.615850e-47 |
| Msa1279480 | Msa1331080 | 0.808074 | 3.703713e-50 | -8.615850e-47 |
| Msa1316360 | Msa1331080 | 0.824153 | 9.416337e-54 | -8.615850e-47 |
| Msa1329870 | Msa1331080 | 0.800002 | 1.767920e-48 | -8.615850e-47 |
| Msa1331080 | Msa1332050 | 0.805320 | 1.413108e-49 | -8.615850e-47 |
| Msa1331080 | Msa1355890 | 0.833806 | 4.316097e-56 | -8.615850e-47 |
| Msa1331080 | Msa1370590 | 0.804029 | 2.628231e-49 | -8.615850e-47 |
| Msa1331080 | Msa1372150 | 0.803520 | 3.352386e-49 | -8.615850e-47 |
| Msa1331080 | Msa1380220 | 0.819549 | 1.095802e-52 | -8.615850e-47 |
| Msa1331080 | Msa1384100 | 0.801439 | 9.001690e-49 | -8.615850e-47 |
| Msa1331080 | Msa1390690 | 0.807190 | 5.704689e-50 | -8.615850e-47 |
| Msa1331080 | Msa1390700 | 0.818731 | 1.682457e-52 | -8.615850e-47 |
| Msa1331080 | Msa1392900 | 0.800988 | 1.113060e-48 | -8.615850e-47 |
| Msa1331080 | Msa1392910 | 0.805681 | 1.186772e-49 | -8.615850e-47 |
| Msa1331080 | Msa1394310 | 0.816097 | 6.591261e-52 | -8.615850e-47 |
| Msa1331080 | Msa1420270 | 0.848471 | 6.003355e-60 | -8.615850e-47 |
| Msa1331080 | Msa1422810 | 0.800410 | 1.460564e-48 | -8.615850e-47 |
| Msa1331080 | Msa1444120 | 0.802470 | 5.525484e-49 | -8.615850e-47 |
| Msa1331080 | Msa1454450 | 0.817067 | 3.995785e-52 | -8.615850e-47 |
| Msa1331080 | Msa1457160 | 0.823643 | 1.240396e-53 | -8.615850e-47 |
| Msa1331080 | Msa1458340 | 0.807843 | 4.146544e-50 | -8.615850e-47 |
| Msa1331080 | Msa1462360 | 0.805628 | 1.218110e-49 | -8.615850e-47 |
| Msa0382370 | Msa1331080 | 0.811483 | 6.843439e-51 | -8.615850e-47 |
| Msa0389390 | Msa1331080 | 0.802333 | 5.896752e-49 | -8.615850e-47 |
| Msa0403770 | Msa1331080 | 0.808128 | 3.605505e-50 | -8.615850e-47 |
| Msa0417330 | Msa1331080 | 0.817889 | 2.609465e-52 | -8.615850e-47 |
| Msa0432160 | Msa1331080 | 0.811535 | 6.670775e-51 | -8.615850e-47 |
| Msa0450400 | Msa1331080 | -0.816144 | 6.433536e-52 | -8.615850e-47 |
| Msa0476680 | Msa1331080 | 0.815587 | 8.565278e-52 | -8.615850e-47 |
| Msa0994370 | Msa1331080 | 0.836831 | 7.428565e-57 | -8.615850e-47 |
| Msa1000930 | Msa1331080 | 0.840465 | 8.552828e-58 | -8.615850e-47 |
| Msa1025080 | Msa1331080 | 0.801233 | 9.918728e-49 | -8.615850e-47 |
| Msa1026940 | Msa1331080 | 0.809986 | 1.442867e-50 | -8.615850e-47 |
| Msa1063420 | Msa1331080 | 0.828695 | 7.791873e-55 | -8.615850e-47 |
| Msa1064250 | Msa1331080 | 0.820967 | 5.185473e-53 | -8.615850e-47 |
| Msa1071320 | Msa1331080 | 0.813962 | 1.962097e-51 | -8.615850e-47 |
| Msa1072900 | Msa1331080 | 0.801868 | 7.349993e-49 | -8.615850e-47 |
| Msa1076960 | Msa1331080 | 0.818400 | 1.998912e-52 | -8.615850e-47 |
| Msa1081790 | Msa1331080 | -0.815016 | 1.147372e-51 | -8.615850e-47 |
| Msa1089450 | Msa1331080 | 0.814478 | 1.509196e-51 | -8.615850e-47 |
| Msa1089460 | Msa1331080 | 0.817355 | 3.442063e-52 | -8.615850e-47 |
| Msa0241140 | Msa1331080 | 0.814849 | 1.249628e-51 | -8.615850e-47 |
| Msa0257490 | Msa1331080 | 0.804776 | 1.836571e-49 | -8.615850e-47 |
| Msa0257520 | Msa1331080 | 0.806284 | 8.862096e-50 | -8.615850e-47 |
| Msa0259210 | Msa1331080 | 0.812183 | 4.819513e-51 | -8.615850e-47 |
| Msa0259220 | Msa1331080 | 0.804738 | 1.870323e-49 | -8.615850e-47 |
| Msa0271770 | Msa1331080 | 0.802535 | 5.356503e-49 | -8.615850e-47 |
| Msa0278580 | Msa1331080 | 0.813034 | 3.139639e-51 | -8.615850e-47 |
| Msa0283420 | Msa1331080 | 0.810591 | 1.068038e-50 | -8.615850e-47 |
| Msa0296820 | Msa1331080 | 0.841730 | 3.978881e-58 | -8.615850e-47 |
| Msa0296980 | Msa1331080 | -0.810052 | 1.396176e-50 | -8.615850e-47 |
| Msa0317960 | Msa1331080 | 0.813110 | 3.021444e-51 | -8.615850e-47 |
| Msa0317970 | Msa1331080 | 0.828095 | 1.087679e-54 | -8.615850e-47 |
| Msa0321690 | Msa1331080 | 0.816194 | 6.270927e-52 | -8.615850e-47 |
| Msa0336310 | Msa1331080 | 0.829395 | 5.273168e-55 | -8.615850e-47 |
| Msa0336320 | Msa1331080 | 0.822789 | 1.963008e-53 | -8.615850e-47 |
| Msa0347750 | Msa1331080 | 0.812139 | 4.927374e-51 | -8.615850e-47 |
| Msa1109090 | Msa1331080 | 0.805909 | 1.063182e-49 | -8.615850e-47 |
| Msa1111870 | Msa1331080 | 0.818079 | 2.363731e-52 | -8.615850e-47 |
| Msa1122860 | Msa1331080 | 0.808498 | 3.007632e-50 | -8.615850e-47 |
| Msa1133230 | Msa1331080 | 0.806356 | 8.560415e-50 | -8.615850e-47 |
| Msa1152920 | Msa1331080 | 0.800650 | 1.305012e-48 | -8.615850e-47 |
| Msa1176710 | Msa1331080 | 0.800047 | 1.731162e-48 | -8.615850e-47 |
| Msa1200250 | Msa1331080 | 0.822992 | 1.760132e-53 | -8.615850e-47 |
| Msa1206270 | Msa1331080 | 0.811151 | 8.079818e-51 | -8.615850e-47 |
| Msa1206290 | Msa1331080 | 0.815383 | 9.508244e-52 | -8.615850e-47 |
| Msa1206360 | Msa1331080 | 0.800710 | 1.268420e-48 | -8.615850e-47 |
| Msa1210020 | Msa1331080 | 0.807120 | 5.903790e-50 | -8.615850e-47 |
| Msa1220870 | Msa1331080 | 0.802150 | 6.430272e-49 | -8.615850e-47 |
| Msa0521010 | Msa1331080 | 0.820212 | 7.729354e-53 | -8.615850e-47 |
| Msa0861470 | Msa1331080 | 0.812531 | 4.045873e-51 | -8.615850e-47 |
| Msa0861570 | Msa1331080 | 0.811867 | 5.647860e-51 | -8.615850e-47 |
| Msa0890550 | Msa1331080 | 0.841261 | 5.289879e-58 | -8.615850e-47 |
| Msa0894710 | Msa1331080 | 0.807620 | 4.624886e-50 | -8.615850e-47 |
| Msa0902830 | Msa1331080 | 0.809147 | 2.185041e-50 | -8.615850e-47 |
| Msa0921420 | Msa1331080 | 0.810850 | 9.389403e-51 | -8.615850e-47 |
| Msa0944610 | Msa1331080 | 0.819679 | 1.023370e-52 | -8.615850e-47 |
| Msa0948320 | Msa1331080 | 0.838447 | 2.860616e-57 | -8.615850e-47 |
| Msa0960390 | Msa1331080 | 0.801961 | 7.032644e-49 | -8.615850e-47 |
| Msa0962840 | Msa1331080 | 0.810270 | 1.252878e-50 | -8.615850e-47 |
| Msa0969370 | Msa1331080 | 0.818126 | 2.306910e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331080 | MtrunA17_Chr4g0060111 | 95.181 | 166 | 8 | 0 | 19 | 184 | 1 | 166 | 8.11e-118 | 335 |
| Msa1331080 | MtrunA17_Chr4g0060151 | 95.181 | 166 | 8 | 0 | 19 | 184 | 1 | 166 | 8.11e-118 | 335 |
| Msa1331080 | MtrunA17_Chr4g0060091 | 94.012 | 167 | 10 | 0 | 18 | 184 | 5 | 171 | 5.01e-117 | 333 |
| Msa1331080 | MtrunA17_Chr4g0060101 | 92.771 | 166 | 12 | 0 | 19 | 184 | 1 | 166 | 5.06e-115 | 328 |
| Msa1331080 | MtrunA17_Chr4g0060171 | 88.571 | 175 | 11 | 1 | 19 | 184 | 1 | 175 | 1.04e-112 | 322 |
| Msa1331080 | MtrunA17_Chr8g0362631 | 77.059 | 170 | 39 | 0 | 19 | 188 | 1 | 170 | 1.78e-99 | 289 |
| Msa1331080 | MtrunA17_Chr6g0452801 | 78.313 | 166 | 36 | 0 | 19 | 184 | 1 | 166 | 3.41e-95 | 278 |
| Msa1331080 | MtrunA17_Chr6g0476481 | 55.294 | 170 | 74 | 1 | 19 | 186 | 1 | 170 | 3.56e-59 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331080 | AT5G62740.1 | 83.735 | 166 | 27 | 0 | 19 | 184 | 1 | 166 | 6.60e-103 | 298 |
| Msa1331080 | AT1G69840.1 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.2 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.5 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.7 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.4 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.6 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT1G69840.3 | 77.381 | 168 | 38 | 0 | 19 | 186 | 1 | 168 | 3.05e-97 | 283 |
| Msa1331080 | AT3G01290.1 | 76.647 | 167 | 39 | 0 | 19 | 185 | 1 | 167 | 5.65e-92 | 270 |
| Msa1331080 | AT5G51570.1 | 54.118 | 170 | 76 | 1 | 19 | 186 | 1 | 170 | 4.52e-60 | 189 |
Find 33 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCAGTGAAAAGAAAA+TGG | 0.251403 | 8_4:+50472942 | Msa1331080:CDS |
| GCATCATCCAAGTTGAGTTT+TGG | 0.266671 | 8_4:-50473691 | None:intergenic |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 8_4:+50473057 | Msa1331080:CDS |
| ATGTTCTCATTGCAGTGATT+AGG | 0.311568 | 8_4:+50473659 | Msa1331080:intron |
| TGTTCTCATTGCAGTGATTA+GGG | 0.312025 | 8_4:+50473660 | Msa1331080:intron |
| CAACAGGCTATGTCAGCTTA+TGG | 0.321761 | 8_4:+50473834 | Msa1331080:intron |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 8_4:+50473101 | Msa1331080:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 8_4:+50473072 | Msa1331080:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 8_4:+50473003 | Msa1331080:CDS |
| GCCGCCTTCACATGCTGATC+TGG | 0.418175 | 8_4:-50473894 | None:intergenic |
| CATTGCAGTGAAAAGAAAAT+GGG | 0.429423 | 8_4:+50472943 | Msa1331080:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8_4:+50473029 | Msa1331080:CDS |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 8_4:+50473088 | Msa1331080:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8_4:+50473472 | Msa1331080:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 8_4:+50473049 | Msa1331080:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8_4:+50473030 | Msa1331080:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8_4:-50473048 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 8_4:-50473139 | None:intergenic |
| AAGCGTTCCAAAACTCAACT+TGG | 0.571578 | 8_4:+50473684 | Msa1331080:CDS |
| GCTATGAATGAAATCAATGC+TGG | 0.578813 | 8_4:+50473915 | Msa1331080:CDS |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 8_4:-50473056 | None:intergenic |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8_4:+50473726 | Msa1331080:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8_4:+50473481 | Msa1331080:CDS |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 8_4:+50472997 | Msa1331080:CDS |
| GCCAGATCAGCATGTGAAGG+CGG | 0.594901 | 8_4:+50473893 | Msa1331080:CDS |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8_4:-50473489 | None:intergenic |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8_4:+50473744 | Msa1331080:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8_4:+50472984 | Msa1331080:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8_4:-50473484 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.624349 | 8_4:+50473516 | Msa1331080:CDS |
| AGAGCCAGATCAGCATGTGA+AGG | 0.648209 | 8_4:+50473890 | Msa1331080:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8_4:+50473128 | Msa1331080:CDS |
| ATTGCAGTGAAAAGAAAATG+GGG | 0.673791 | 8_4:+50472944 | Msa1331080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAAAGTATTTATGTTAT+TGG | - | chr8_4:50473219-50473238 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | + | chr8_4:50473238-50473257 | Msa1331080:intron | 15.0% |
| !! | AATATGCAAATTATCTAATA+AGG | + | chr8_4:50473628-50473647 | Msa1331080:intron | 15.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | - | chr8_4:50473219-50473238 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | + | chr8_4:50473238-50473257 | Msa1331080:intron | 15.0% |
| !! | AATATGCAAATTATCTAATA+AGG | + | chr8_4:50473628-50473647 | Msa1331080:intron | 15.0% |
| !!! | GTCTGGTTTTAATATTTATT+TGG | + | chr8_4:50473417-50473436 | Msa1331080:intron | 20.0% |
| !! | TTTAATATTTATTTGGTTGC+AGG | + | chr8_4:50473424-50473443 | Msa1331080:intron | 20.0% |
| !!! | ACAAATAGTATTTACTGATT+AGG | + | chr8_4:50473778-50473797 | Msa1331080:intron | 20.0% |
| !!! | TAATTTTGAATCATATCAAC+AGG | + | chr8_4:50473818-50473837 | Msa1331080:intron | 20.0% |
| !!! | GTCTGGTTTTAATATTTATT+TGG | + | chr8_4:50473417-50473436 | Msa1331080:intron | 20.0% |
| !! | TTTAATATTTATTTGGTTGC+AGG | + | chr8_4:50473424-50473443 | Msa1331080:intron | 20.0% |
| !!! | ACAAATAGTATTTACTGATT+AGG | + | chr8_4:50473778-50473797 | Msa1331080:intron | 20.0% |
| !!! | TAATTTTGAATCATATCAAC+AGG | + | chr8_4:50473818-50473837 | Msa1331080:intron | 20.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr8_4:50473017-50473036 | Msa1331080:CDS | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | - | chr8_4:50473210-50473229 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAGGTGTCATCT+TGG | + | chr8_4:50473249-50473268 | Msa1331080:intron | 25.0% |
| ! | CTTATATGTTTGCTTAAGTA+TGG | + | chr8_4:50473290-50473309 | Msa1331080:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | - | chr8_4:50473341-50473360 | None:intergenic | 25.0% |
| ! | TCCATTAAATTAATGTTGTC+TGG | + | chr8_4:50473400-50473419 | Msa1331080:intron | 25.0% |
| ! | ACCAGACAACATTAATTTAA+TGG | - | chr8_4:50473404-50473423 | None:intergenic | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8_4:50473545-50473564 | Msa1331080:CDS | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr8_4:50473017-50473036 | Msa1331080:CDS | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | - | chr8_4:50473210-50473229 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAGGTGTCATCT+TGG | + | chr8_4:50473249-50473268 | Msa1331080:intron | 25.0% |
| ! | CTTATATGTTTGCTTAAGTA+TGG | + | chr8_4:50473290-50473309 | Msa1331080:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | - | chr8_4:50473341-50473360 | None:intergenic | 25.0% |
| ! | TCCATTAAATTAATGTTGTC+TGG | + | chr8_4:50473400-50473419 | Msa1331080:intron | 25.0% |
| ! | ACCAGACAACATTAATTTAA+TGG | - | chr8_4:50473404-50473423 | None:intergenic | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8_4:50473545-50473564 | Msa1331080:CDS | 25.0% |
| CATTGCAGTGAAAAGAAAAT+GGG | + | chr8_4:50472943-50472962 | Msa1331080:CDS | 30.0% | |
| ATTGCAGTGAAAAGAAAATG+GGG | + | chr8_4:50472944-50472963 | Msa1331080:CDS | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8_4:50473516-50473535 | Msa1331080:CDS | 30.0% | |
| CATTGCAGTGAAAAGAAAAT+GGG | + | chr8_4:50472943-50472962 | Msa1331080:CDS | 30.0% | |
| ATTGCAGTGAAAAGAAAATG+GGG | + | chr8_4:50472944-50472963 | Msa1331080:CDS | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8_4:50473516-50473535 | Msa1331080:CDS | 30.0% | |
| GCATTGCAGTGAAAAGAAAA+TGG | + | chr8_4:50472942-50472961 | Msa1331080:CDS | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | - | chr8_4:50473069-50473088 | None:intergenic | 35.0% |
| TTTCTTGGAAAACGAATTGC+TGG | + | chr8_4:50473072-50473091 | Msa1331080:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | - | chr8_4:50473142-50473161 | None:intergenic | 35.0% | |
| ! | GTTTGTTACTGTCTCAAACT+TGG | + | chr8_4:50473154-50473173 | Msa1331080:intron | 35.0% |
| CATGGAATGACATGAAGATT+TGG | - | chr8_4:50473192-50473211 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | + | chr8_4:50473315-50473334 | Msa1331080:intron | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | + | chr8_4:50473599-50473618 | Msa1331080:intron | 35.0% | |
| ATGTTCTCATTGCAGTGATT+AGG | + | chr8_4:50473659-50473678 | Msa1331080:intron | 35.0% | |
| TGTTCTCATTGCAGTGATTA+GGG | + | chr8_4:50473660-50473679 | Msa1331080:intron | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | + | chr8_4:50473726-50473745 | Msa1331080:CDS | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | + | chr8_4:50473915-50473934 | Msa1331080:CDS | 35.0% | |
| GCATTGCAGTGAAAAGAAAA+TGG | + | chr8_4:50472942-50472961 | Msa1331080:CDS | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | - | chr8_4:50473069-50473088 | None:intergenic | 35.0% |
| TTTCTTGGAAAACGAATTGC+TGG | + | chr8_4:50473072-50473091 | Msa1331080:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | - | chr8_4:50473142-50473161 | None:intergenic | 35.0% | |
| ! | GTTTGTTACTGTCTCAAACT+TGG | + | chr8_4:50473154-50473173 | Msa1331080:intron | 35.0% |
| CATGGAATGACATGAAGATT+TGG | - | chr8_4:50473192-50473211 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | + | chr8_4:50473315-50473334 | Msa1331080:intron | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | + | chr8_4:50473599-50473618 | Msa1331080:intron | 35.0% | |
| ATGTTCTCATTGCAGTGATT+AGG | + | chr8_4:50473659-50473678 | Msa1331080:intron | 35.0% | |
| TGTTCTCATTGCAGTGATTA+GGG | + | chr8_4:50473660-50473679 | Msa1331080:intron | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | + | chr8_4:50473726-50473745 | Msa1331080:CDS | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | + | chr8_4:50473915-50473934 | Msa1331080:CDS | 35.0% | |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr8_4:50472984-50473003 | Msa1331080:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr8_4:50473029-50473048 | Msa1331080:CDS | 40.0% |
| CAAATGTGAGACCAAGACAA+AGG | + | chr8_4:50473128-50473147 | Msa1331080:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8_4:50473472-50473491 | Msa1331080:CDS | 40.0% | |
| AAGCGTTCCAAAACTCAACT+TGG | + | chr8_4:50473684-50473703 | Msa1331080:CDS | 40.0% | |
| !! | GCATCATCCAAGTTGAGTTT+TGG | - | chr8_4:50473694-50473713 | None:intergenic | 40.0% |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8_4:50473744-50473763 | Msa1331080:CDS | 40.0% | |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr8_4:50472984-50473003 | Msa1331080:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr8_4:50473029-50473048 | Msa1331080:CDS | 40.0% |
| CAAATGTGAGACCAAGACAA+AGG | + | chr8_4:50473128-50473147 | Msa1331080:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8_4:50473472-50473491 | Msa1331080:CDS | 40.0% | |
| AAGCGTTCCAAAACTCAACT+TGG | + | chr8_4:50473684-50473703 | Msa1331080:CDS | 40.0% | |
| !! | GCATCATCCAAGTTGAGTTT+TGG | - | chr8_4:50473694-50473713 | None:intergenic | 40.0% |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8_4:50473744-50473763 | Msa1331080:CDS | 40.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | + | chr8_4:50472997-50473016 | Msa1331080:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr8_4:50473003-50473022 | Msa1331080:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr8_4:50473030-50473049 | Msa1331080:CDS | 45.0% |
| CAAGAAACCATGGCATGCAA+TGG | - | chr8_4:50473059-50473078 | None:intergenic | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | + | chr8_4:50473057-50473076 | Msa1331080:CDS | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | + | chr8_4:50473088-50473107 | Msa1331080:CDS | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | + | chr8_4:50473101-50473120 | Msa1331080:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr8_4:50473132-50473151 | Msa1331080:intron | 45.0% | |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | - | chr8_4:50473492-50473511 | None:intergenic | 45.0% |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8_4:50473834-50473853 | Msa1331080:intron | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | + | chr8_4:50472997-50473016 | Msa1331080:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr8_4:50473003-50473022 | Msa1331080:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr8_4:50473030-50473049 | Msa1331080:CDS | 45.0% |
| CAAGAAACCATGGCATGCAA+TGG | - | chr8_4:50473059-50473078 | None:intergenic | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | + | chr8_4:50473057-50473076 | Msa1331080:CDS | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | + | chr8_4:50473088-50473107 | Msa1331080:CDS | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | + | chr8_4:50473101-50473120 | Msa1331080:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr8_4:50473132-50473151 | Msa1331080:intron | 45.0% | |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | - | chr8_4:50473492-50473511 | None:intergenic | 45.0% |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8_4:50473834-50473853 | Msa1331080:intron | 45.0% | |
| AGAGCCAGATCAGCATGTGA+AGG | + | chr8_4:50473890-50473909 | Msa1331080:CDS | 50.0% | |
| AGAGCCAGATCAGCATGTGA+AGG | + | chr8_4:50473890-50473909 | Msa1331080:CDS | 50.0% | |
| CATGGCATGCAATGGCATCC+CGG | - | chr8_4:50473051-50473070 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | + | chr8_4:50473481-50473500 | Msa1331080:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | - | chr8_4:50473487-50473506 | None:intergenic | 55.0% |
| GCCAGATCAGCATGTGAAGG+CGG | + | chr8_4:50473893-50473912 | Msa1331080:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | - | chr8_4:50473051-50473070 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | + | chr8_4:50473481-50473500 | Msa1331080:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | - | chr8_4:50473487-50473506 | None:intergenic | 55.0% |
| GCCAGATCAGCATGTGAAGG+CGG | + | chr8_4:50473893-50473912 | Msa1331080:CDS | 55.0% | |
| CGGGATGCCATTGCATGCCA+TGG | + | chr8_4:50473049-50473068 | Msa1331080:CDS | 60.0% | |
| GCCGCCTTCACATGCTGATC+TGG | - | chr8_4:50473897-50473916 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | + | chr8_4:50473049-50473068 | Msa1331080:CDS | 60.0% | |
| GCCGCCTTCACATGCTGATC+TGG | - | chr8_4:50473897-50473916 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 50472907 | 50473950 | 50472907 | ID=Msa1331080;Name=Msa1331080 |
| chr8_4 | mRNA | 50472907 | 50473950 | 50472907 | ID=Msa1331080-mRNA-1;Parent=Msa1331080;Name=Msa1331080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.5|1|1|1|4|0|188 |
| chr8_4 | exon | 50472907 | 50473149 | 50472907 | ID=Msa1331080-mRNA-1:exon:14728;Parent=Msa1331080-mRNA-1 |
| chr8_4 | exon | 50473446 | 50473566 | 50473446 | ID=Msa1331080-mRNA-1:exon:14729;Parent=Msa1331080-mRNA-1 |
| chr8_4 | exon | 50473674 | 50473765 | 50473674 | ID=Msa1331080-mRNA-1:exon:14730;Parent=Msa1331080-mRNA-1 |
| chr8_4 | exon | 50473840 | 50473950 | 50473840 | ID=Msa1331080-mRNA-1:exon:14731;Parent=Msa1331080-mRNA-1 |
| chr8_4 | CDS | 50472907 | 50473149 | 50472907 | ID=Msa1331080-mRNA-1:cds;Parent=Msa1331080-mRNA-1 |
| chr8_4 | CDS | 50473446 | 50473566 | 50473446 | ID=Msa1331080-mRNA-1:cds;Parent=Msa1331080-mRNA-1 |
| chr8_4 | CDS | 50473674 | 50473765 | 50473674 | ID=Msa1331080-mRNA-1:cds;Parent=Msa1331080-mRNA-1 |
| chr8_4 | CDS | 50473840 | 50473950 | 50473840 | ID=Msa1331080-mRNA-1:cds;Parent=Msa1331080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
