Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819080 | XP_003616743.2 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 2.60e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819080 | G7K7C1 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 1.24e-123 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa0819080 | 0.814104 | 1.826231e-51 | -8.615850e-47 |
| Msa0059960 | Msa0819080 | -0.808613 | 2.841484e-50 | -8.615850e-47 |
| Msa0620270 | Msa0819080 | 0.809832 | 1.557102e-50 | -8.615850e-47 |
| Msa0819080 | Msa0859200 | 0.809566 | 1.775797e-50 | -8.615850e-47 |
| Msa0819080 | Msa0930330 | 0.802358 | 5.828187e-49 | -8.615850e-47 |
| Msa0819080 | Msa1004500 | 0.827516 | 1.498569e-54 | -8.615850e-47 |
| Msa0819080 | Msa1004520 | 0.817507 | 3.181286e-52 | -8.615850e-47 |
| Msa0819080 | Msa1014270 | 0.809320 | 2.005586e-50 | -8.615850e-47 |
| Msa0819080 | Msa1044340 | 0.822844 | 1.905348e-53 | -8.615850e-47 |
| Msa0819080 | Msa1045880 | 0.830083 | 3.584954e-55 | -8.615850e-47 |
| Msa0819080 | Msa1045970 | 0.827172 | 1.811777e-54 | -8.615850e-47 |
| Msa0819080 | Msa1046870 | 0.824827 | 6.537210e-54 | -8.615850e-47 |
| Msa0819080 | Msa1149760 | 0.832565 | 8.791546e-56 | -8.615850e-47 |
| Msa0819080 | Msa1183390 | 0.802785 | 4.756718e-49 | -8.615850e-47 |
| Msa0819080 | Msa1200920 | 0.808818 | 2.568880e-50 | -8.615850e-47 |
| Msa0819080 | Msa1263660 | 0.810057 | 1.392959e-50 | -8.615850e-47 |
| Msa0819080 | Msa1323060 | 0.813296 | 2.750395e-51 | -8.615850e-47 |
| Msa0819080 | Msa1354040 | 0.807386 | 5.183651e-50 | -8.615850e-47 |
| Msa0819080 | Msa1355680 | 0.973052 | 8.843715e-136 | -8.615850e-47 |
| Msa0819080 | Msa1429830 | 0.809450 | 1.880562e-50 | -8.615850e-47 |
| Msa0139900 | Msa0819080 | 0.812913 | 3.337848e-51 | -8.615850e-47 |
| Msa0207000 | Msa0819080 | 0.806550 | 7.789366e-50 | -8.615850e-47 |
| Msa0227500 | Msa0819080 | 0.825477 | 4.589215e-54 | -8.615850e-47 |
| Msa0439780 | Msa0819080 | 0.805176 | 1.514829e-49 | -8.615850e-47 |
| Msa0264350 | Msa0819080 | 0.801394 | 9.192481e-49 | -8.615850e-47 |
| Msa0302450 | Msa0819080 | 0.808285 | 3.338590e-50 | -8.615850e-47 |
| Msa0320540 | Msa0819080 | 0.820877 | 5.438333e-53 | -8.615850e-47 |
| Msa0344070 | Msa0819080 | 0.815832 | 7.554868e-52 | -8.615850e-47 |
| Msa0575250 | Msa0819080 | 0.800461 | 1.426051e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819080 | MtrunA17_Chr5g0437991 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 2.39e-127 | 355 |
| Msa0819080 | MtrunA17_Chr3g0106861 | 46.835 | 158 | 82 | 1 | 25 | 180 | 1 | 158 | 1.29e-45 | 147 |
| Msa0819080 | MtrunA17_Chr7g0244441 | 58.537 | 123 | 50 | 1 | 51 | 173 | 6 | 127 | 5.39e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819080 | AT2G40435.1 | 64.103 | 156 | 54 | 2 | 25 | 179 | 1 | 155 | 1.32e-67 | 203 |
| Msa0819080 | AT3G56220.1 | 57.419 | 155 | 63 | 3 | 25 | 177 | 1 | 154 | 5.06e-57 | 176 |
| Msa0819080 | AT2G40435.2 | 65.354 | 127 | 43 | 1 | 25 | 150 | 1 | 127 | 1.45e-55 | 172 |
| Msa0819080 | AT2G40435.3 | 64.341 | 129 | 45 | 1 | 25 | 152 | 1 | 129 | 1.57e-55 | 172 |
| Msa0819080 | AT3G56220.2 | 58.015 | 131 | 48 | 4 | 25 | 151 | 1 | 128 | 1.54e-43 | 142 |
Find 31 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCTGAGGCCATTTAAA+AGG | 0.297363 | 5_3:+55161537 | None:intergenic |
| ATTGGCAGAACTTGAAGATT+TGG | 0.300801 | 5_3:+55159081 | None:intergenic |
| GAAAATATATGCCGGTAGTA+AGG | 0.350569 | 5_3:-55159052 | Msa0819080:three_prime_UTR |
| CTCAATTACCATAGGCAAGT+TGG | 0.394555 | 5_3:+55160689 | None:intergenic |
| CAATACATATAAATAGATAT+TGG | 0.395990 | 5_3:+55159200 | None:intergenic |
| AGAAAACACATGAGATCATA+TGG | 0.396404 | 5_3:-55161581 | None:intergenic |
| GCCTCAGAACTCATCAGAAT+TGG | 0.404408 | 5_3:-55161526 | Msa0819080:CDS |
| TCAATTACCATAGGCAAGTT+GGG | 0.413845 | 5_3:+55160690 | None:intergenic |
| TACAGTGGAAACCCTAGAAA+AGG | 0.442701 | 5_3:-55159918 | Msa0819080:CDS |
| GCTTACTGTGCTGGAAGCTA+GGG | 0.457026 | 5_3:-55159816 | Msa0819080:CDS |
| GGTTGCAATTTACACTTGAT+CGG | 0.468244 | 5_3:+55159221 | None:intergenic |
| TATTGAAAATCTAAAGGAAA+AGG | 0.484456 | 5_3:-55160766 | Msa0819080:CDS |
| AGAGATGAGGCTTACTGTGC+TGG | 0.485736 | 5_3:-55159825 | Msa0819080:CDS |
| GGCTTACTGTGCTGGAAGCT+AGG | 0.491888 | 5_3:-55159817 | Msa0819080:CDS |
| CCACAATCCCAACTTGCCTA+TGG | 0.504234 | 5_3:-55160697 | Msa0819080:intron |
| AAAGTATATTGAAAATCTAA+AGG | 0.516255 | 5_3:-55160772 | Msa0819080:CDS |
| AGTAAGCCTCATCTCTTCAA+TGG | 0.521158 | 5_3:+55159832 | None:intergenic |
| CTTCCAAGCTGTTGGAGGAG+AGG | 0.526484 | 5_3:-55159771 | Msa0819080:intron |
| CCATAGGCAAGTTGGGATTG+TGG | 0.527764 | 5_3:+55160697 | None:intergenic |
| ACAGTGGAAACCCTAGAAAA+GGG | 0.541907 | 5_3:-55159917 | Msa0819080:CDS |
| AAAATATATGCCGGTAGTAA+GGG | 0.546912 | 5_3:-55159051 | Msa0819080:three_prime_UTR |
| TTACCTCTCCTCCAACAGCT+TGG | 0.552308 | 5_3:+55159768 | None:intergenic |
| AACAAACGGACCCTTACTAC+CGG | 0.570419 | 5_3:+55159041 | None:intergenic |
| TTGAAGCCATTGAAGAGATG+AGG | 0.583640 | 5_3:-55159838 | Msa0819080:CDS |
| TGATGCATCGATTACGATCG+AGG | 0.609202 | 5_3:+55160794 | None:intergenic |
| GTATTGAAACAAGCATACCT+TGG | 0.629414 | 5_3:+55159861 | None:intergenic |
| ACCAATTCTGATGAGTTCTG+AGG | 0.646466 | 5_3:+55161525 | None:intergenic |
| TGGACTTGTGCAGGTTACAG+TGG | 0.658893 | 5_3:-55159933 | Msa0819080:intron |
| ACAAGCTGTGAAACAAGCCG+TGG | 0.676305 | 5_3:-55159274 | Msa0819080:CDS |
| CAAGCTGTGAAACAAGCCGT+GGG | 0.688309 | 5_3:-55159273 | Msa0819080:CDS |
| CTTATGTAGAATGAAGAACA+AGG | 0.699994 | 5_3:-55159312 | Msa0819080:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTCCAATAATAAAAA+TGG | + | chr5_3:55159387-55159406 | None:intergenic | 10.0% |
| !! | AAGACTATATATTATTATTA+GGG | + | chr5_3:55161179-55161198 | None:intergenic | 10.0% |
| !!! | GAATATTCTTTTATAGAATT+GGG | + | chr5_3:55159327-55159346 | None:intergenic | 15.0% |
| !!! | TGAATATTCTTTTATAGAAT+TGG | + | chr5_3:55159328-55159347 | None:intergenic | 15.0% |
| !! | TAATAAAAAAATAGCAAACT+TGG | + | chr5_3:55159414-55159433 | None:intergenic | 15.0% |
| !! | AAAGTATATTGAAAATCTAA+AGG | - | chr5_3:55159846-55159865 | Msa0819080:CDS | 15.0% |
| !!! | TATAGAGCAAATATTTTTTA+TGG | - | chr5_3:55159983-55160002 | Msa0819080:intron | 15.0% |
| !! | AACTTATAAACAATTAAACA+TGG | - | chr5_3:55160361-55160380 | Msa0819080:intron | 15.0% |
| !!! | TAATTCACTTTTTTTTTTCA+TGG | - | chr5_3:55160531-55160550 | Msa0819080:intron | 15.0% |
| !!! | AATTCACTTTTTTTTTTCAT+GGG | - | chr5_3:55160532-55160551 | Msa0819080:intron | 15.0% |
| !! | GAAGACTATATATTATTATT+AGG | + | chr5_3:55161180-55161199 | None:intergenic | 15.0% |
| !! | CAATACATATAAATAGATAT+TGG | + | chr5_3:55161421-55161440 | None:intergenic | 15.0% |
| !!! | GCATATATTTTCATTAAAAT+TGG | + | chr5_3:55161558-55161577 | None:intergenic | 15.0% |
| !!! | ATTTTAATGAAAATATATGC+CGG | - | chr5_3:55161558-55161577 | Msa0819080:five_prime_UTR | 15.0% |
| !! | AAAGAGAAAACACAAAAAAA+TGG | - | chr5_3:55159142-55159161 | Msa0819080:three_prime_UTR | 20.0% |
| !! | TTTCATTGAGAATATATTGA+TGG | + | chr5_3:55159301-55159320 | None:intergenic | 20.0% |
| !! | TTTCTAATACTTTCTTCTTA+TGG | - | chr5_3:55159767-55159786 | Msa0819080:intron | 20.0% |
| !! | TATTGAAAATCTAAAGGAAA+AGG | - | chr5_3:55159852-55159871 | Msa0819080:CDS | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr5_3:55160037-55160056 | Msa0819080:intron | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr5_3:55160051-55160070 | Msa0819080:intron | 20.0% |
| !!! | ATCTCTTTGAATTGTTTTAT+TGG | + | chr5_3:55160453-55160472 | None:intergenic | 20.0% |
| !!! | GAAATTTGAAATGGATTTTA+TGG | - | chr5_3:55160661-55160680 | Msa0819080:intron | 20.0% |
| !!! | GAGTAACGTTTTTATATAAA+GGG | + | chr5_3:55161065-55161084 | None:intergenic | 20.0% |
| !!! | TGAGTAACGTTTTTATATAA+AGG | + | chr5_3:55161066-55161085 | None:intergenic | 20.0% |
| !! | ATATAAAAACGTTACTCATT+TGG | - | chr5_3:55161068-55161087 | Msa0819080:intron | 20.0% |
| !! | TATAAAAACGTTACTCATTT+GGG | - | chr5_3:55161069-55161088 | Msa0819080:intron | 20.0% |
| !! | TTATTATTAGGGTTAAGATT+AGG | + | chr5_3:55161168-55161187 | None:intergenic | 20.0% |
| !!! | TTTATCAAGCTTTATTTTGT+TGG | - | chr5_3:55161477-55161496 | Msa0819080:CDS | 20.0% |
| !! | TCATAACTCTTCCTTTTAAA+TGG | - | chr5_3:55159070-55159089 | Msa0819080:three_prime_UTR | 25.0% |
| ! | AACACAAAAAAATGGTTTCT+AGG | - | chr5_3:55159150-55159169 | Msa0819080:three_prime_UTR | 25.0% |
| ! | ACACAAAAAAATGGTTTCTA+GGG | - | chr5_3:55159151-55159170 | Msa0819080:three_prime_UTR | 25.0% |
| ! | AATGGAAAGAAAAGAAAGAT+AGG | + | chr5_3:55159268-55159287 | None:intergenic | 25.0% |
| !! | TATCTTTCTTTTCTTTCCAT+TGG | - | chr5_3:55159267-55159286 | Msa0819080:CDS | 25.0% |
| !!! | TTTGGGTCCATTTTTATTAT+TGG | - | chr5_3:55159377-55159396 | Msa0819080:intron | 25.0% |
| ! | GCAGAAAGAATGAATTAATA+AGG | + | chr5_3:55159488-55159507 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGATAGATAGACA+AGG | + | chr5_3:55160479-55160498 | None:intergenic | 25.0% |
| ! | GAGAAATTGTTTACAATAAC+TGG | + | chr5_3:55160569-55160588 | None:intergenic | 25.0% |
| ! | TGCAAGTATGAAATTTGAAA+TGG | - | chr5_3:55160652-55160671 | Msa0819080:intron | 25.0% |
| !!! | TTTGAAATGGATTTTATGGA+TGG | - | chr5_3:55160665-55160684 | Msa0819080:intron | 25.0% |
| !! | TATAAGAAATCCCTTTTCTA+GGG | + | chr5_3:55160714-55160733 | None:intergenic | 25.0% |
| !! | TTATAAGAAATCCCTTTTCT+AGG | + | chr5_3:55160715-55160734 | None:intergenic | 25.0% |
| ! | ACAAAAATATTGACAAGTGA+AGG | + | chr5_3:55161028-55161047 | None:intergenic | 25.0% |
| ! | ATAAAAACGTTACTCATTTG+GGG | - | chr5_3:55161070-55161089 | Msa0819080:intron | 25.0% |
| ! | GTACATTGAATCATTGATAT+TGG | - | chr5_3:55161119-55161138 | Msa0819080:intron | 25.0% |
| ! | TCTTCATTTAATTGTCTACT+AGG | - | chr5_3:55161195-55161214 | Msa0819080:intron | 25.0% |
| !!! | AGCTTTATTTTGTTGGTTTA+AGG | - | chr5_3:55161484-55161503 | Msa0819080:CDS | 25.0% |
| TATACTCTTGTTCCTGATTT+GGG | - | chr5_3:55159360-55159379 | Msa0819080:intron | 30.0% | |
| AATAAAAATGGACCCAAATC+AGG | + | chr5_3:55159375-55159394 | None:intergenic | 30.0% | |
| GCTGATAAGAATATAGGATA+AGG | + | chr5_3:55159712-55159731 | None:intergenic | 30.0% | |
| CACATAGCTGATAAGAATAT+AGG | + | chr5_3:55159718-55159737 | None:intergenic | 30.0% | |
| CTATATTCTTATCAGCTATG+TGG | - | chr5_3:55159716-55159735 | Msa0819080:intron | 30.0% | |
| TATGTGGAGCTTATTTGATA+TGG | - | chr5_3:55159732-55159751 | Msa0819080:intron | 30.0% | |
| ! | CTTCTTATGGTTTTTATGCA+TGG | - | chr5_3:55159780-55159799 | Msa0819080:CDS | 30.0% |
| ! | TATGGTTTTTATGCATGGTT+TGG | - | chr5_3:55159785-55159804 | Msa0819080:CDS | 30.0% |
| ! | GTACTTTTCTCAATTACCAT+AGG | + | chr5_3:55159940-55159959 | None:intergenic | 30.0% |
| !! | CTGCTTTTGGATAAACAATT+TGG | - | chr5_3:55160246-55160265 | Msa0819080:intron | 30.0% |
| !!! | TAGGGTCAAGACTTTTTTTT+AGG | + | chr5_3:55160493-55160512 | None:intergenic | 30.0% |
| ATTCTGCTGCAAGTTATTTA+GGG | + | chr5_3:55160511-55160530 | None:intergenic | 30.0% | |
| AATTCTGCTGCAAGTTATTT+AGG | + | chr5_3:55160512-55160531 | None:intergenic | 30.0% | |
| AAGATTAGGCACCATATATA+TGG | + | chr5_3:55161154-55161173 | None:intergenic | 30.0% | |
| CTTATGTAGAATGAAGAACA+AGG | - | chr5_3:55161306-55161325 | Msa0819080:intron | 30.0% | |
| !!! | ATTTTTTATTGCTTGTCCCA+CGG | + | chr5_3:55161364-55161383 | None:intergenic | 30.0% |
| TGGGACAAGCAATAAAAAAT+TGG | - | chr5_3:55161364-55161383 | Msa0819080:intron | 30.0% | |
| AAAATATATGCCGGTAGTAA+GGG | - | chr5_3:55161567-55161586 | Msa0819080:five_prime_UTR | 30.0% | |
| GATAGGAGATAGAAAATGCA+GGG | + | chr5_3:55159251-55159270 | None:intergenic | 35.0% | |
| AGATAGGAGATAGAAAATGC+AGG | + | chr5_3:55159252-55159271 | None:intergenic | 35.0% | |
| ATTGATGGAGAGAAATCCAA+TGG | + | chr5_3:55159286-55159305 | None:intergenic | 35.0% | |
| CTATACTCTTGTTCCTGATT+TGG | - | chr5_3:55159359-55159378 | Msa0819080:intron | 35.0% | |
| ! | GGATGAGAGCATAAAAGTAT+AGG | + | chr5_3:55159522-55159541 | None:intergenic | 35.0% |
| TTTGAACCTAGATATGCATG+TGG | + | chr5_3:55159543-55159562 | None:intergenic | 35.0% | |
| AGGATACACATACACTACTA+TGG | + | chr5_3:55159692-55159711 | None:intergenic | 35.0% | |
| TCAATTACCATAGGCAAGTT+GGG | + | chr5_3:55159931-55159950 | None:intergenic | 35.0% | |
| ! | GATCAGAATTTGACTGCTTT+TGG | - | chr5_3:55160233-55160252 | Msa0819080:intron | 35.0% |
| ! | TTTTCGTTAACCGTCTTGAA+GGG | - | chr5_3:55160316-55160335 | Msa0819080:intron | 35.0% |
| ! | TTTTCATAAGCCCTTCAAGA+CGG | + | chr5_3:55160329-55160348 | None:intergenic | 35.0% |
| TTGTTAATATCGCGAGCTAA+TGG | + | chr5_3:55160396-55160415 | None:intergenic | 35.0% | |
| CTCACAAGTGTAATGTTAGT+AGG | - | chr5_3:55160417-55160436 | Msa0819080:intron | 35.0% | |
| GTATTGAAACAAGCATACCT+TGG | + | chr5_3:55160760-55160779 | None:intergenic | 35.0% | |
| ! | AATTTTTGCTTCCAAGCTGT+TGG | - | chr5_3:55160839-55160858 | Msa0819080:intron | 35.0% |
| TGATTCAATGTACAGCAACT+CGG | + | chr5_3:55161112-55161131 | None:intergenic | 35.0% | |
| GGTCATGCAATCCATATATA+TGG | - | chr5_3:55161140-55161159 | Msa0819080:intron | 35.0% | |
| TCGTTATTGATGAACTTAGC+TGG | + | chr5_3:55161229-55161248 | None:intergenic | 35.0% | |
| !! | AGAATGACGGAAAGTTTTTG+TGG | - | chr5_3:55161283-55161302 | Msa0819080:intron | 35.0% |
| GGTTGCAATTTACACTTGAT+CGG | + | chr5_3:55161400-55161419 | None:intergenic | 35.0% | |
| ATTGGCAGAACTTGAAGATT+TGG | + | chr5_3:55161540-55161559 | None:intergenic | 35.0% | |
| GAAAATATATGCCGGTAGTA+AGG | - | chr5_3:55161566-55161585 | Msa0819080:five_prime_UTR | 35.0% | |
| !! | GAGTTCTGAGGCCATTTAAA+AGG | + | chr5_3:55159084-55159103 | None:intergenic | 40.0% |
| ACCAATTCTGATGAGTTCTG+AGG | + | chr5_3:55159096-55159115 | None:intergenic | 40.0% | |
| ! | GAGCATAAAAGTATAGGCAG+TGG | + | chr5_3:55159516-55159535 | None:intergenic | 40.0% |
| TCTCATCCACATGCATATCT+AGG | - | chr5_3:55159534-55159553 | Msa0819080:intron | 40.0% | |
| CTCAATTACCATAGGCAAGT+TGG | + | chr5_3:55159932-55159951 | None:intergenic | 40.0% | |
| GTGGCTGAAAAATAGGAAGT+GGG | + | chr5_3:55160089-55160108 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr5_3:55160090-55160109 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr5_3:55160113-55160132 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr5_3:55160116-55160135 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr5_3:55160124-55160143 | Msa0819080:intron | 40.0% | |
| ! | GTTTTCGTTAACCGTCTTGA+AGG | - | chr5_3:55160315-55160334 | Msa0819080:intron | 40.0% |
| !! | TTTTATGGATGGACTTGTGC+AGG | - | chr5_3:55160676-55160695 | Msa0819080:intron | 40.0% |
| TACAGTGGAAACCCTAGAAA+AGG | - | chr5_3:55160700-55160719 | Msa0819080:CDS | 40.0% | |
| ACAGTGGAAACCCTAGAAAA+GGG | - | chr5_3:55160701-55160720 | Msa0819080:CDS | 40.0% | |
| ! | TTTTCTGCAAAAAGCAGCCA+AGG | - | chr5_3:55160740-55160759 | Msa0819080:CDS | 40.0% |
| TTGAAGCCATTGAAGAGATG+AGG | - | chr5_3:55160780-55160799 | Msa0819080:CDS | 40.0% | |
| AGTAAGCCTCATCTCTTCAA+TGG | + | chr5_3:55160789-55160808 | None:intergenic | 40.0% | |
| ! | ATTTGGGGTTCTCGAGAAAA+GGG | - | chr5_3:55161085-55161104 | Msa0819080:intron | 40.0% |
| GCCTCAGAACTCATCAGAAT+TGG | - | chr5_3:55159092-55159111 | Msa0819080:three_prime_UTR | 45.0% | |
| !! | TGATGCATCGATTACGATCG+AGG | + | chr5_3:55159827-55159846 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr5_3:55160096-55160115 | None:intergenic | 45.0% |
| ! | TTTTGCTTCCAAGCTGTTGG+AGG | - | chr5_3:55160842-55160861 | Msa0819080:intron | 45.0% |
| ! | CATTTGGGGTTCTCGAGAAA+AGG | - | chr5_3:55161084-55161103 | Msa0819080:intron | 45.0% |
| CCGTCATTCTCATGCATGAT+GGG | + | chr5_3:55161273-55161292 | None:intergenic | 45.0% | |
| CCCATCATGCATGAGAATGA+CGG | - | chr5_3:55161270-55161289 | Msa0819080:intron | 45.0% | |
| TCCGTCATTCTCATGCATGA+TGG | + | chr5_3:55161274-55161293 | None:intergenic | 45.0% | |
| !! | CTATAAAAAATTATATAAAT+GGG | + | chr5_3:55159968-55159987 | None:intergenic | 5.0% |
| !! | TCTATAAAAAATTATATAAA+TGG | + | chr5_3:55159969-55159988 | None:intergenic | 5.0% |
| !! | AAGAAAAATAATAATAAATA+TGG | + | chr5_3:55161450-55161469 | None:intergenic | 5.0% |
| ! | CCATAGGCAAGTTGGGATTG+TGG | + | chr5_3:55159924-55159943 | None:intergenic | 50.0% |
| CCACAATCCCAACTTGCCTA+TGG | - | chr5_3:55159921-55159940 | Msa0819080:CDS | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr5_3:55160103-55160122 | Msa0819080:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr5_3:55160108-55160127 | None:intergenic | 50.0% | |
| TGGACTTGTGCAGGTTACAG+TGG | - | chr5_3:55160685-55160704 | Msa0819080:intron | 50.0% | |
| AGAGATGAGGCTTACTGTGC+TGG | - | chr5_3:55160793-55160812 | Msa0819080:CDS | 50.0% | |
| GCTTACTGTGCTGGAAGCTA+GGG | - | chr5_3:55160802-55160821 | Msa0819080:CDS | 50.0% | |
| TTACCTCTCCTCCAACAGCT+TGG | + | chr5_3:55160853-55160872 | None:intergenic | 50.0% | |
| ACAAGCTGTGAAACAAGCCG+TGG | - | chr5_3:55161344-55161363 | Msa0819080:intron | 50.0% | |
| CAAGCTGTGAAACAAGCCGT+GGG | - | chr5_3:55161345-55161364 | Msa0819080:intron | 50.0% | |
| GGCTTACTGTGCTGGAAGCT+AGG | - | chr5_3:55160801-55160820 | Msa0819080:CDS | 55.0% | |
| CTTCCAAGCTGTTGGAGGAG+AGG | - | chr5_3:55160847-55160866 | Msa0819080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55159047 | 55161593 | 55159047 | ID=Msa0819080;Name=Msa0819080 |
| chr5_3 | mRNA | 55159047 | 55161593 | 55159047 | ID=Msa0819080-mRNA-1;Parent=Msa0819080;Name=Msa0819080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=42|1|1|1|1|1|4|183|181 |
| chr5_3 | exon | 55159047 | 55159325 | 55159047 | ID=Msa0819080-mRNA-1:exon:16745;Parent=Msa0819080-mRNA-1 |
| chr5_3 | exon | 55159772 | 55159942 | 55159772 | ID=Msa0819080-mRNA-1:exon:16744;Parent=Msa0819080-mRNA-1 |
| chr5_3 | exon | 55160698 | 55160826 | 55160698 | ID=Msa0819080-mRNA-1:exon:16743;Parent=Msa0819080-mRNA-1 |
| chr5_3 | exon | 55161402 | 55161593 | 55161402 | ID=Msa0819080-mRNA-1:exon:16742;Parent=Msa0819080-mRNA-1 |
| chr5_3 | five_prime_UTR | 55161552 | 55161593 | 55161552 | ID=Msa0819080-mRNA-1:five_prime_utr;Parent=Msa0819080-mRNA-1 |
| chr5_3 | CDS | 55161402 | 55161551 | 55161402 | ID=Msa0819080-mRNA-1:cds;Parent=Msa0819080-mRNA-1 |
| chr5_3 | CDS | 55160698 | 55160826 | 55160698 | ID=Msa0819080-mRNA-1:cds;Parent=Msa0819080-mRNA-1 |
| chr5_3 | CDS | 55159772 | 55159942 | 55159772 | ID=Msa0819080-mRNA-1:cds;Parent=Msa0819080-mRNA-1 |
| chr5_3 | CDS | 55159230 | 55159325 | 55159230 | ID=Msa0819080-mRNA-1:cds;Parent=Msa0819080-mRNA-1 |
| chr5_3 | three_prime_UTR | 55159047 | 55159229 | 55159047 | ID=Msa0819080-mRNA-1:three_prime_utr;Parent=Msa0819080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
