AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045880 MtrunA17_Chr7g0214731 98.428 636 10 0 1 636 1 636 0.0 1303
Msa1045880 MtrunA17_Chr7g0241741 41.997 581 311 12 38 612 1 561 1.22e-147 439
Msa1045880 MtrunA17_Chr4g0005901 41.812 574 310 11 44 612 17 571 5.44e-147 438
Msa1045880 MtrunA17_Chr3g0104011 41.516 554 306 7 63 612 24 563 8.70e-143 427
Msa1045880 MtrunA17_Chr8g0375311 38.992 595 339 9 22 612 8 582 3.47e-140 421
Msa1045880 MtrunA17_Chr8g0375291 39.759 581 326 9 30 606 16 576 4.01e-136 410
Msa1045880 MtrunA17_Chr3g0142101 37.801 582 337 8 51 630 26 584 9.71e-134 404
Msa1045880 MtrunA17_Chr3g0142091 37.997 579 336 7 51 627 17 574 4.17e-129 392
Msa1045880 MtrunA17_Chr8g0375321 38.919 555 318 7 62 610 38 577 4.81e-124 379
Msa1045880 MtrunA17_Chr8g0375351 37.871 573 337 7 42 610 23 580 4.98e-124 379
Msa1045880 MtrunA17_Chr8g0375341 38.087 554 328 5 62 612 41 582 6.11e-124 379
Msa1045880 MtrunA17_Chr7g0271221 37.071 553 324 7 63 614 19 548 3.85e-121 372
Msa1045880 MtrunA17_Chr8g0375331 39.060 553 320 7 62 610 25 564 6.05e-121 370
Msa1045880 MtrunA17_Chr7g0261881 36.425 593 354 11 44 633 12 584 1.57e-120 370
Msa1045880 MtrunA17_Chr7g0261811 35.966 595 366 9 44 637 12 592 4.79e-120 369
Msa1045880 MtrunA17_Chr7g0261791 36.535 583 354 9 31 611 1 569 8.78e-119 366
Msa1045880 MtrunA17_Chr1g0187241 35.593 590 356 11 44 630 11 579 2.85e-118 364
Msa1045880 MtrunA17_Chr7g0261771 35.314 606 375 12 34 637 5 595 2.92e-118 365
Msa1045880 MtrunA17_Chr8g0375361 36.752 585 348 8 34 612 13 581 4.92e-118 363
Msa1045880 MtrunA17_Chr1g0193391 35.740 554 332 7 63 615 19 549 6.26e-116 359
Msa1045880 MtrunA17_Chr3g0114501 36.254 582 347 12 38 614 1 563 6.63e-115 355
Msa1045880 MtrunA17_Chr7g0255621 35.185 594 363 10 54 638 10 590 7.46e-114 353
Msa1045880 MtrunA17_Chr5g0422881 35.406 579 354 10 63 634 22 587 2.39e-113 352
Msa1045880 MtrunA17_Chr5g0399061 34.859 568 342 9 62 618 28 578 3.11e-113 351
Msa1045880 MtrunA17_Chr3g0133341 37.004 554 328 10 63 613 16 551 1.24e-111 347
Msa1045880 MtrunA17_Chr5g0439381 36.285 576 333 7 45 615 13 559 5.04e-111 345
Msa1045880 MtrunA17_Chr5g0399071 36.222 577 343 7 60 627 24 584 4.45e-110 343
Msa1045880 MtrunA17_Chr7g0261851 37.696 573 334 11 44 611 13 567 1.37e-109 342
Msa1045880 MtrunA17_Chr4g0056431 36.500 600 345 12 48 626 2 586 1.84e-109 342
Msa1045880 MtrunA17_Chr1g0166711 35.752 565 348 8 51 614 16 566 3.08e-109 341
Msa1045880 MtrunA17_Chr3g0112611 35.009 557 338 11 62 613 33 570 6.67e-109 340
Msa1045880 MtrunA17_Chr7g0214461 35.221 565 338 9 52 610 70 612 7.97e-109 341
Msa1045880 MtrunA17_Chr2g0284701 34.397 564 351 9 63 614 34 590 1.12e-108 340
Msa1045880 MtrunA17_Chr7g0240381 34.336 565 337 11 54 612 22 558 7.06e-108 337
Msa1045880 MtrunA17_Chr1g0213711 35.791 556 328 9 62 610 22 555 8.53e-108 337
Msa1045880 MtrunA17_Chr3g0112671 33.394 554 341 10 62 613 34 561 1.82e-107 336
Msa1045880 MtrunA17_Chr5g0415791 36.572 566 337 9 54 612 27 577 4.27e-107 336
Msa1045880 MtrunA17_Chr1g0166741 34.791 549 338 9 40 588 8 536 7.53e-107 335
Msa1045880 MtrunA17_Chr4g0063591 36.767 563 322 10 60 612 21 559 1.31e-105 331
Msa1045880 MtrunA17_Chr7g0218851 36.445 557 323 11 63 610 48 582 2.04e-105 332
Msa1045880 MtrunA17_Chr7g0217461 36.106 565 347 6 62 621 25 580 6.64e-105 330
Msa1045880 MtrunA17_Chr7g0255601 34.353 556 347 8 63 612 29 572 7.58e-105 330
Msa1045880 MtrunA17_Chr1g0166791 33.392 572 366 9 44 614 9 566 2.22e-104 328
Msa1045880 MtrunA17_Chr4g0008651 32.979 564 354 9 54 613 27 570 7.19e-103 325
Msa1045880 MtrunA17_Chr8g0353031 35.428 573 325 9 62 621 19 559 7.34e-103 324
Msa1045880 MtrunA17_Chr4g0059981 34.722 576 344 11 66 627 36 593 6.59e-101 320
Msa1045880 MtrunA17_Chr1g0166771 34.690 516 319 6 80 595 10 507 3.13e-100 316
Msa1045880 MtrunA17_Chr7g0255611 30.870 609 395 10 35 630 4 599 2.85e-99 315
Msa1045880 MtrunA17_Chr5g0400371 33.813 556 349 8 62 610 113 656 8.80e-99 316
Msa1045880 MtrunA17_Chr4g0059971 34.039 567 333 13 66 612 39 584 1.03e-97 311
Msa1045880 MtrunA17_Chr4g0054891 32.727 605 367 12 16 610 75 649 3.01e-97 312
Msa1045880 MtrunA17_Chr4g0069581 35.081 553 331 13 90 637 15 544 3.62e-97 309
Msa1045880 MtrunA17_Chr8g0362711 34.752 564 336 9 63 612 26 571 1.27e-96 308
Msa1045880 MtrunA17_Chr4g0011471 33.394 554 341 10 68 610 21 557 1.38e-96 308
Msa1045880 MtrunA17_Chr8g0362781 31.317 562 364 8 63 613 32 582 2.04e-96 307
Msa1045880 MtrunA17_Chr8g0379971 34.948 578 344 10 63 614 22 593 2.69e-95 305
Msa1045880 MtrunA17_Chr7g0261661 37.527 461 271 8 177 631 26 475 3.48e-95 301
Msa1045880 MtrunA17_Chr2g0276751 33.217 572 341 12 48 612 26 563 7.03e-95 303
Msa1045880 MtrunA17_Chr4g0014781 33.034 557 330 11 62 611 30 550 6.83e-94 300
Msa1045880 MtrunA17_Chr5g0415961 34.003 597 354 12 31 612 1 572 6.13e-93 298
Msa1045880 MtrunA17_Chr4g0059991 31.703 593 364 12 66 637 27 599 1.05e-90 293
Msa1045880 MtrunA17_Chr4g0014871 32.321 560 341 10 62 616 31 557 1.32e-90 291
Msa1045880 MtrunA17_Chr8g0379991 35.355 577 318 13 82 614 1 566 3.99e-90 291
Msa1045880 MtrunA17_Chr4g0014791 32.562 562 334 10 62 616 30 553 4.84e-90 290
Msa1045880 MtrunA17_Chr8g0390331 35.626 567 315 12 63 609 17 553 2.25e-89 289
Msa1045880 MtrunA17_Chr2g0331481 33.390 587 347 15 65 634 29 588 5.07e-89 290
Msa1045880 MtrunA17_Chr4g0014841 31.362 558 346 9 62 616 30 553 7.62e-89 287
Msa1045880 MtrunA17_Chr2g0331471 33.163 588 351 14 63 634 90 651 1.16e-88 290
Msa1045880 MtrunA17_Chr4g0014801 31.835 556 336 11 63 611 31 550 1.89e-88 286
Msa1045880 MtrunA17_Chr7g0261751 34.623 491 273 9 34 486 5 485 2.98e-87 281
Msa1045880 MtrunA17_Chr1g0157601 33.095 559 350 9 58 609 12 553 7.83e-86 279
Msa1045880 MtrunA17_Chr3g0077151 31.404 570 338 11 51 612 19 543 2.06e-85 277
Msa1045880 MtrunA17_Chr8g0362801 35.619 452 276 7 168 612 18 461 3.92e-82 267
Msa1045880 MtrunA17_Chr2g0331521 31.478 575 365 13 46 609 7 563 6.48e-82 270
Msa1045880 MtrunA17_Chr4g0003761 31.765 595 355 14 61 632 30 596 1.24e-80 266
Msa1045880 MtrunA17_Chr1g0166731 34.205 459 292 5 157 614 14 463 1.48e-80 263
Msa1045880 MtrunA17_Chr4g0011041 28.596 577 371 12 51 610 27 579 4.00e-80 265
Msa1045880 MtrunA17_Chr1g0147631 33.507 576 350 11 63 626 27 581 1.25e-79 263
Msa1045880 MtrunA17_Chr4g0060001 31.228 570 360 14 63 620 31 580 1.61e-79 263
Msa1045880 MtrunA17_Chr3g0082631 34.081 446 272 9 184 615 25 462 4.94e-79 258
Msa1045880 MtrunA17_Chr1g0157611 32.310 554 347 10 65 609 20 554 4.78e-78 258
Msa1045880 MtrunA17_Chr2g0331461 32.297 579 344 15 65 621 29 581 3.31e-76 255
Msa1045880 MtrunA17_Chr2g0331511 31.369 577 353 15 63 621 23 574 5.54e-76 255
Msa1045880 MtrunA17_Chr1g0157621 32.649 536 334 12 82 609 1 517 2.35e-74 249
Msa1045880 MtrunA17_Chr7g0261731 38.418 354 207 7 34 386 5 348 1.30e-73 240
Msa1045880 MtrunA17_Chr4g0014861 32.118 439 272 8 185 616 13 432 2.51e-72 239
Msa1045880 MtrunA17_Chr1g0177591 30.233 559 340 15 63 609 44 564 8.64e-72 242
Msa1045880 MtrunA17_Chr5g0415841 30.172 464 303 8 168 623 18 468 4.59e-69 232
Msa1045880 MtrunA17_Chr7g0240271 27.719 570 387 10 50 609 13 567 3.43e-66 228
Msa1045880 MtrunA17_Chr3g0142111 38.926 298 174 3 51 348 37 326 1.40e-64 216
Msa1045880 MtrunA17_Chr7g0240281 28.647 569 379 10 51 607 14 567 8.31e-64 221
Msa1045880 MtrunA17_Chr1g0177611 31.336 434 270 8 184 609 22 435 9.01e-63 214
Msa1045880 MtrunA17_Chr1g0177631 31.567 434 269 8 184 609 22 435 4.96e-61 210
Msa1045880 MtrunA17_Chr3g0142121 38.194 288 161 5 342 627 11 283 5.05e-60 202
Msa1045880 MtrunA17_Chr7g0240211 28.539 445 299 8 175 609 21 456 6.91e-56 197
Msa1045880 MtrunA17_Chr7g0240181 28.539 445 299 8 175 609 21 456 7.49e-56 197
Msa1045880 MtrunA17_Chr7g0235521 27.928 444 303 7 175 609 21 456 1.04e-54 194
Msa1045880 MtrunA17_Chr7g0240131 28.539 445 299 8 175 609 21 456 1.58e-54 193
Msa1045880 MtrunA17_Chr7g0234151 31.163 430 252 10 185 609 28 418 1.27e-53 189
Msa1045880 MtrunA17_Chr7g0234381 31.860 430 249 10 185 609 28 418 1.38e-53 189
Msa1045880 MtrunA17_Chr7g0240151 27.928 444 285 8 175 609 21 438 2.04e-52 187
Msa1045880 MtrunA17_Chr7g0234181 31.163 430 252 10 185 609 23 413 3.53e-52 185
Msa1045880 MtrunA17_Chr2g0325951 27.061 558 370 11 62 612 20 547 5.33e-51 185
Msa1045880 MtrunA17_Chr2g0325961 28.447 573 344 17 62 612 20 548 2.35e-50 183
Msa1045880 MtrunA17_Chr3g0112631 34.296 277 172 6 341 613 3 273 2.71e-50 176
Msa1045880 MtrunA17_Chr4g0060071 33.667 300 186 6 316 613 11 299 1.23e-49 175
Msa1045880 MtrunA17_Chr2g0326211 24.783 577 371 13 56 612 14 547 2.31e-49 181
Msa1045880 MtrunA17_Chr6g0451841 25.594 547 363 10 80 614 24 538 7.29e-45 167
Msa1045880 MtrunA17_Chr7g0261721 32.394 213 140 3 413 625 6 214 2.67e-31 122
Msa1045880 MtrunA17_Chr1g0147591 35.000 200 111 5 191 380 5 195 1.13e-29 116
Msa1045880 MtrunA17_Chr3g0112651 32.487 197 125 4 154 350 23 211 1.12e-27 111
Msa1045880 MtrunA17_Chr7g0261831 35.714 154 92 4 295 446 1 149 3.05e-18 84.0
Msa1045880 MtrunA17_Chr4g0060061 32.231 121 82 0 178 298 8 128 1.18e-16 77.0
Msa1045880 MtrunA17_Chr1g0166721 41.667 96 55 1 51 146 16 110 2.74e-16 76.3
Msa1045880 MtrunA17_Chr3g0112661 37.647 85 53 0 62 146 32 116 1.23e-14 71.2
Msa1045880 MtrunA17_Chr7g0261671 38.596 114 67 3 34 146 6 117 1.61e-14 70.5
Msa1045880 MtrunA17_Chr2g0326221 25.688 218 128 5 396 612 39 223 4.11e-14 72.0
Msa1045880 MtrunA17_Chr4g0014851 38.824 85 52 0 62 146 31 115 4.72e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045880 AT5G13400.1 77.977 613 132 2 1 612 1 611 0.0 1007
Msa1045880 AT3G54140.1 40.244 574 321 10 44 612 7 563 1.20e-144 432
Msa1045880 AT3G54140.2 40.244 574 321 10 44 612 7 563 1.20e-144 432
Msa1045880 AT5G01180.2 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1045880 AT5G01180.3 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1045880 AT5G01180.1 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1045880 AT2G02040.1 41.336 554 308 7 63 612 41 581 1.82e-142 427
Msa1045880 AT1G62200.1 40.278 576 319 8 32 602 22 577 7.81e-137 412
Msa1045880 AT1G62200.2 38.512 605 318 9 32 602 22 606 9.06e-131 398
Msa1045880 AT1G62200.3 38.512 605 318 9 32 602 36 620 1.27e-130 398
Msa1045880 AT2G02020.1 38.011 563 296 9 51 611 31 542 3.27e-120 368
Msa1045880 AT2G37900.1 34.729 573 336 11 45 613 29 567 9.33e-113 350
Msa1045880 AT2G26690.1 37.282 574 326 13 60 623 21 570 1.03e-111 347
Msa1045880 AT3G53960.1 35.233 579 333 14 45 613 28 574 2.69e-111 347
Msa1045880 AT5G46040.1 34.848 594 368 11 40 630 6 583 1.18e-110 345
Msa1045880 AT2G40460.1 34.888 579 353 10 38 614 1 557 4.60e-110 343
Msa1045880 AT1G68570.1 36.250 560 341 7 65 618 25 574 1.71e-109 342
Msa1045880 AT3G21670.1 36.234 563 323 6 60 614 26 560 2.19e-109 342
Msa1045880 AT5G46050.1 35.091 550 341 9 40 588 6 540 1.48e-108 339
Msa1045880 AT3G54450.1 33.394 554 338 6 65 612 14 542 1.81e-106 333
Msa1045880 AT1G68570.2 35.818 550 337 7 75 618 5 544 6.60e-106 332
Msa1045880 AT1G12110.1 35.540 574 348 9 60 626 24 582 1.29e-105 332
Msa1045880 AT1G69870.1 34.000 600 371 12 44 635 33 615 6.74e-105 331
Msa1045880 AT2G26690.2 36.315 559 322 12 75 623 3 537 1.43e-104 328
Msa1045880 AT1G32450.1 34.102 607 355 15 41 626 17 599 1.32e-102 325
Msa1045880 AT2G02020.2 35.346 563 290 10 51 611 31 521 1.04e-101 320
Msa1045880 AT2G26690.3 36.496 548 314 13 86 623 2 525 3.58e-101 318
Msa1045880 AT1G59740.1 34.128 545 342 6 62 604 40 569 2.44e-99 315
Msa1045880 AT2G37900.2 35.433 508 299 10 110 613 6 488 3.43e-99 312
Msa1045880 AT1G69850.1 34.790 572 336 9 63 613 25 580 7.50e-99 314
Msa1045880 AT4G21680.1 35.000 560 340 8 62 611 27 572 7.92e-99 314
Msa1045880 AT1G33440.1 34.138 580 355 11 62 634 37 596 9.98e-98 311
Msa1045880 AT5G19640.1 34.532 556 322 12 64 610 60 582 5.86e-96 307
Msa1045880 AT1G27040.2 34.234 555 338 9 63 611 23 556 3.25e-91 293
Msa1045880 AT1G27040.1 34.234 555 338 9 63 611 27 560 3.46e-91 293
Msa1045880 AT1G27080.1 31.570 567 359 9 53 612 4 548 1.03e-90 293
Msa1045880 AT1G52190.1 34.159 565 343 11 59 609 17 566 5.12e-89 289
Msa1045880 AT1G27040.3 34.196 541 329 9 77 611 9 528 9.68e-88 283
Msa1045880 AT1G18880.1 30.645 558 363 7 66 612 22 566 1.72e-87 285
Msa1045880 AT3G47960.1 32.740 562 346 10 66 612 64 608 9.18e-87 284
Msa1045880 AT5G62680.1 31.188 606 389 11 21 612 1 592 1.84e-86 283
Msa1045880 AT3G16180.1 33.276 583 351 12 65 625 25 591 5.91e-86 280
Msa1045880 AT5G62730.1 30.808 594 362 11 33 615 33 588 6.12e-86 280
Msa1045880 AT5G46050.2 34.633 436 275 6 154 588 2 428 5.21e-85 274
Msa1045880 AT5G62730.2 31.485 559 341 10 68 615 2 529 2.02e-84 275
Msa1045880 AT1G72120.1 33.630 562 325 13 62 612 28 552 1.77e-83 273
Msa1045880 AT1G22570.1 31.028 564 344 12 62 612 29 560 5.72e-82 269
Msa1045880 AT1G72140.1 30.265 565 337 11 62 613 33 553 1.55e-80 265
Msa1045880 AT1G22550.1 32.389 565 334 14 62 612 29 559 1.85e-80 265
Msa1045880 AT1G27080.2 31.418 522 329 9 98 612 7 506 2.93e-80 264
Msa1045880 AT1G72125.1 31.495 562 349 11 62 616 28 560 3.43e-80 265
Msa1045880 AT3G25260.1 30.309 551 324 11 63 609 21 515 2.36e-77 256
Msa1045880 AT1G22540.1 31.712 555 338 15 62 609 29 549 5.30e-77 256
Msa1045880 AT1G69860.1 31.185 574 355 10 52 612 3 549 1.70e-76 254
Msa1045880 AT1G22570.2 30.254 552 340 12 74 612 4 523 7.03e-76 252
Msa1045880 AT1G72130.1 29.965 564 334 13 64 617 26 538 6.42e-74 247
Msa1045880 AT5G28470.2 28.905 557 366 12 63 609 17 553 2.45e-71 241
Msa1045880 AT5G28470.1 28.905 557 364 13 63 609 17 551 7.88e-70 237
Msa1045880 AT3G25280.1 28.727 550 340 12 63 609 21 521 2.71e-67 229
Msa1045880 AT3G45710.1 28.571 588 358 17 56 623 14 559 1.59e-65 225
Msa1045880 AT3G45650.1 28.108 555 361 12 63 612 22 543 6.90e-65 223
Msa1045880 AT3G45700.1 28.371 571 360 14 62 622 15 546 7.86e-63 218
Msa1045880 AT3G45680.1 28.970 573 362 15 62 625 19 555 4.55e-62 216
Msa1045880 AT3G45660.1 27.875 574 367 15 63 629 21 554 5.47e-62 216
Msa1045880 AT3G45660.3 27.875 574 367 15 63 629 21 554 5.47e-62 216
Msa1045880 AT3G45660.2 27.875 574 367 15 63 629 42 575 7.33e-62 216
Msa1045880 AT3G45650.2 26.850 581 361 13 63 612 22 569 1.83e-59 209
Msa1045880 AT3G45720.1 28.393 560 353 15 63 612 19 540 1.33e-56 201
Msa1045880 AT1G72130.2 28.894 443 269 10 185 617 14 420 1.66e-56 197
Msa1045880 AT1G72130.3 28.894 443 269 10 185 617 14 420 1.66e-56 197
Msa1045880 AT5G14940.1 24.825 572 343 12 80 615 24 544 1.31e-54 195
Msa1045880 AT3G01350.1 26.003 573 357 11 80 621 24 560 3.08e-54 194
Msa1045880 AT3G45690.1 27.207 555 328 16 62 612 17 499 6.67e-51 184
Msa1045880 AT5G11570.1 25.830 542 311 13 72 609 22 476 1.30e-43 163
Msa1045880 AT2G38100.2 25.849 530 319 17 99 609 10 484 2.67e-29 122
Msa1045880 AT2G38100.1 25.777 547 331 18 82 609 10 500 4.35e-29 122
Msa1045880 AT2G38100.3 25.777 547 331 18 82 609 16 506 6.04e-29 121

Find 116 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTAAGTGAGTGTTTA+AGG 0.112269 7_2:-6131592 None:intergenic
GAACATTAAACTTGATAATT+TGG 0.135880 7_2:+6132241 Msa1045880:CDS
TGCCAAATTTAAGTGCTTAT+TGG 0.163181 7_2:+6131868 Msa1045880:CDS
GGTCTATGTTCAAATGAAAT+TGG 0.164056 7_2:+6130767 Msa1045880:CDS
ATTGCTGCCTTCTTTATATT+TGG 0.176863 7_2:+6128947 Msa1045880:CDS
GCAGAAAGAATGGCTTATTT+TGG 0.182047 7_2:+6129255 Msa1045880:CDS
TTGATTCAATATTGCTTAAT+TGG 0.195137 7_2:+6131894 Msa1045880:CDS
TTGGGTTGGGGTTCTGCTTT+TGG 0.200637 7_2:+6130786 Msa1045880:CDS
AACCAATAAGCACTTAAATT+TGG 0.204333 7_2:-6131870 None:intergenic
TTCTAGCTAGTTTAAATATA+TGG 0.208193 7_2:+6132293 Msa1045880:exon
TTGCTCATACTGATGATTTC+AGG 0.218331 7_2:+6131024 Msa1045880:CDS
AATGCAGTCAATAATTTCTT+AGG 0.237323 7_2:+6129342 Msa1045880:CDS
AGACCATGTGTATCTTCTTT+TGG 0.243431 7_2:+6130633 Msa1045880:CDS
TCACAAGCTTCTTCTGTTCT+TGG 0.246695 7_2:+6129369 Msa1045880:CDS
CAAAGAATTGGAATTGGTTT+AGG 0.253602 7_2:+6131747 Msa1045880:CDS
AAATATACCCCTCACTTTAG+AGG 0.270126 7_2:-6132338 None:intergenic
GTCCCTTGTTGAGGAGCTTC+TGG 0.275509 7_2:-6128770 None:intergenic
GCTGCTTTAGCTGGTGGATT+AGG 0.281571 7_2:+6132005 Msa1045880:CDS
AGGTTCCATTGACTTGGATT+AGG 0.295324 7_2:-6131444 None:intergenic
ATGCATACCTTGGACGTTAC+TGG 0.310134 7_2:+6129406 Msa1045880:CDS
ATTGAGGATCTTTCTAAAAC+TGG 0.317548 7_2:+6128917 Msa1045880:CDS
TCTACACCTGTTAATATTCA+TGG 0.321471 7_2:+6128887 Msa1045880:CDS
TGGTAGAAGATCTGCTATAA+AGG 0.325332 7_2:+6130989 Msa1045880:CDS
GAGGATAGAAGGATGGCTTT+AGG 0.330296 7_2:+6128845 Msa1045880:CDS
GACCAATTATCACTTCTATT+AGG 0.331157 7_2:+6130217 Msa1045880:CDS
TTCTATCTTTCTGTGACAAT+TGG 0.332881 7_2:+6130720 Msa1045880:CDS
TTCCTAATAGAAGTGATAAT+TGG 0.337644 7_2:-6130219 None:intergenic
AAAGTGAGGGGTATATTTAA+AGG 0.343643 7_2:+6132343 Msa1045880:three_prime_UTR
GCATCTCAGCTTCAAAGAAT+TGG 0.351587 7_2:+6131735 Msa1045880:CDS
TGAAAAGCGGTACAAAAGTT+TGG 0.355525 7_2:-6131686 None:intergenic
TGTTCAAATGAAATTGGGTT+GGG 0.357013 7_2:+6130773 Msa1045880:CDS
GGTTCCATTGACTTGGATTA+GGG 0.361442 7_2:-6131443 None:intergenic
CAGCTTCAAAGAATTGGAAT+TGG 0.361704 7_2:+6131741 Msa1045880:CDS
CAAGCTTCTTCTGTTCTTGG+TGG 0.377343 7_2:+6129372 Msa1045880:CDS
AAAACCGGCATGCATGTAAC+TGG 0.377966 7_2:-6131624 None:intergenic
AGGATAGAAGGATGGCTTTA+GGG 0.379409 7_2:+6128846 Msa1045880:CDS
CAGATAAAAGACAAGAATCT+TGG 0.379936 7_2:+6132081 Msa1045880:CDS
TCTGCTTATGCTGCTTTAGC+TGG 0.393452 7_2:+6131996 Msa1045880:CDS
GTGTGTTAGAGCTAGTAAAA+TGG 0.396762 7_2:+6128727 Msa1045880:exon
TCATTGAGTCTGAGGATAGA+AGG 0.397462 7_2:+6128834 Msa1045880:CDS
GTTCTATACATAACAGCATT+TGG 0.401544 7_2:+6130286 Msa1045880:CDS
CGAAAGAGAAAAGAATCATT+TGG 0.406039 7_2:+6130933 Msa1045880:CDS
TAAGAAATTATTGACTGCAT+TGG 0.408173 7_2:-6129340 None:intergenic
GAGATCATTAAAATCTTAAT+CGG 0.412263 7_2:-6132401 None:intergenic
ATGATTGTGCAAGCTGGAAT+TGG 0.416463 7_2:-6131516 None:intergenic
GTTGGGTTGTATGAGGTTCC+TGG 0.417358 7_2:+6130969 Msa1045880:CDS
TGTTTAAGGTATATGCTTGT+TGG 0.437145 7_2:-6131578 None:intergenic
TTGATAATTTGGCAAACAAT+GGG 0.441596 7_2:+6132252 Msa1045880:CDS
GACTGAGAGAGTTAGAAATT+CGG 0.450049 7_2:-6131556 None:intergenic
ACTTGAGCGACTCGTGTAAG+AGG 0.451347 7_2:-6130894 None:intergenic
TACACGAGTCGCTCAAGTAT+TGG 0.457764 7_2:+6130899 Msa1045880:CDS
ATCTTTCTAAAACTGGTGGT+TGG 0.458191 7_2:+6128924 Msa1045880:CDS
ATGCATCACATAAAACATAA+AGG 0.459047 7_2:-6129298 None:intergenic
TTTGGTAATAGTGAAGTTGT+TGG 0.461645 7_2:+6130951 Msa1045880:CDS
GTCTATGTTCAAATGAAATT+GGG 0.468317 7_2:+6130768 Msa1045880:CDS
AAATGAAATGGCAGAAAGAA+TGG 0.471770 7_2:+6129245 Msa1045880:CDS
TAAGCACTTAAATTTGGCAT+TGG 0.472247 7_2:-6131864 None:intergenic
CCTGATGCTATGAAAAGTAT+TGG 0.473797 7_2:+6131972 Msa1045880:CDS
CTTGATAATTTGGCAAACAA+TGG 0.474016 7_2:+6132251 Msa1045880:CDS
GGTAGAAGATCTGCTATAAA+GGG 0.480231 7_2:+6130990 Msa1045880:CDS
GTACAAAGGTTCCATTGACT+TGG 0.480579 7_2:-6131450 None:intergenic
GGTTCATTGGCAATAGCAAT+GGG 0.486016 7_2:+6130807 Msa1045880:CDS
TGAAGTTGTTGGGTTGTATG+AGG 0.491613 7_2:+6130962 Msa1045880:CDS
TGGTTCATTGGCAATAGCAA+TGG 0.496742 7_2:+6130806 Msa1045880:CDS
TTGTATAGACATAGGTTGCC+AGG 0.499116 7_2:+6130864 Msa1045880:CDS
GCTTATGCTGCTTTAGCTGG+TGG 0.504449 7_2:+6131999 Msa1045880:CDS
GTACACCTTTGTATAGACAT+AGG 0.505286 7_2:+6130856 Msa1045880:CDS
TTGGTAATAGTGAAGTTGTT+GGG 0.508569 7_2:+6130952 Msa1045880:CDS
AGAAGGATGGCTTTAGGGCG+TGG 0.510086 7_2:+6128851 Msa1045880:CDS
ATGAGGAATACACTTAGGCC+TGG 0.513514 7_2:-6131648 None:intergenic
AGTGTTGTTAAATCAGCCTC+TGG 0.514150 7_2:+6132053 Msa1045880:CDS
TTTCTGCTCATTGAAGTGCA+TGG 0.520712 7_2:-6128794 None:intergenic
TAGAGGTATGTCATTTGCCA+TGG 0.522678 7_2:-6130259 None:intergenic
GCATTGGATGAACTTGCAAA+AGG 0.523734 7_2:-6129324 None:intergenic
GTTCAAATGAAATTGGGTTG+GGG 0.526250 7_2:+6130774 Msa1045880:CDS
TTAAGCATGATTGTGCAAGC+TGG 0.527229 7_2:-6131522 None:intergenic
ATGTTCAAATGAAATTGGGT+TGG 0.527545 7_2:+6130772 Msa1045880:CDS
TTTCTAGCTGATGCATACCT+TGG 0.527808 7_2:+6129396 Msa1045880:CDS
ATAACAGCATTTGGAGCTGC+AGG 0.530231 7_2:+6130295 Msa1045880:CDS
ATGGCCCTAATCCAAGTCAA+TGG 0.532912 7_2:+6131439 Msa1045880:CDS
CTACTTGTGTTACTGTACAA+AGG 0.543543 7_2:-6131464 None:intergenic
ATACATACCAAATATAAAGA+AGG 0.545633 7_2:-6128954 None:intergenic
CAGCACATAGATACAAATAC+AGG 0.546985 7_2:+6132195 Msa1045880:CDS
TATACCTTAAACACTCACTT+AGG 0.555464 7_2:+6131588 Msa1045880:CDS
GACACAACATGTTTATGAGA+TGG 0.562119 7_2:+6132217 Msa1045880:CDS
GCTCTACAATTGAAACAAGA+TGG 0.565645 7_2:+6131420 Msa1045880:CDS
CTAATATGAGGAATACACTT+AGG 0.566459 7_2:-6131653 None:intergenic
GGTTACTGCAGGAAATGAAA+TGG 0.566480 7_2:+6129233 Msa1045880:intron
GTATTAGTCCTCTAAAGTGA+GGG 0.567731 7_2:+6132330 Msa1045880:three_prime_UTR
GGTAATAGAGAGCTAATATG+AGG 0.570895 7_2:-6131665 None:intergenic
TCAATGAGCAGAAAGAAACT+TGG 0.574485 7_2:+6128803 Msa1045880:CDS
ACTTCCAGTTACATGCATGC+CGG 0.579964 7_2:+6131620 Msa1045880:CDS
TTTATAGCAGATCTTCTACC+AGG 0.580725 7_2:-6130987 None:intergenic
TTAGGGCGTGGTTATACAAG+AGG 0.582655 7_2:+6128863 Msa1045880:CDS
GTGCATGGTGTCCCTTGTTG+AGG 0.586491 7_2:-6128779 None:intergenic
GAGGATCTTTCTAAAACTGG+TGG 0.590113 7_2:+6128920 Msa1045880:CDS
TATTCATGGAAAATCCATTG+AGG 0.592324 7_2:+6128901 Msa1045880:CDS
CGCATCACTGGTCATCCGCA+TGG 0.596174 7_2:+6131711 Msa1045880:CDS
TGTATTAGTCCTCTAAAGTG+AGG 0.600612 7_2:+6132329 Msa1045880:three_prime_UTR
CCAGTGATGCGTTTGAAAAG+CGG 0.602166 7_2:-6131699 None:intergenic
CTTCACTACAATTTATCTCG+CGG 0.610444 7_2:+6129440 Msa1045880:CDS
CGTGTAAGAGGACTTCCACC+TGG 0.612686 7_2:-6130882 None:intergenic
TCACCAGAAGCTCCTCAACA+AGG 0.615556 7_2:+6128767 Msa1045880:CDS
CTATTGTCCAGTAACGTCCA+AGG 0.628088 7_2:-6129413 None:intergenic
TGAGTCTGAGGATAGAAGGA+TGG 0.636242 7_2:+6128838 Msa1045880:CDS
CACCAGAAGCTCCTCAACAA+GGG 0.647560 7_2:+6128768 Msa1045880:CDS
CTCTCATTAGATGCATGAGT+AGG 0.653011 7_2:+6128640 Msa1045880:five_prime_UTR
ACTGTGAGCCTGCAAAACCA+TGG 0.656363 7_2:+6130242 Msa1045880:CDS
TTGTCTCAAAACATCAACAC+TGG 0.656717 7_2:+6132104 Msa1045880:CDS
AATTGTAGCATTCACAGCAG+TGG 0.669454 7_2:+6130746 Msa1045880:CDS
TATTAGTCCTCTAAAGTGAG+GGG 0.677539 7_2:+6132331 Msa1045880:three_prime_UTR
GGCAACCTATGTCTATACAA+AGG 0.679165 7_2:-6130861 None:intergenic
TTATGTATAGAACAGTGTAG+AGG 0.694790 7_2:-6130276 None:intergenic
TATAGACATAGGTTGCCAGG+TGG 0.698387 7_2:+6130867 Msa1045880:CDS
GCTCCAAAAGAAGATACACA+TGG 0.731891 7_2:-6130636 None:intergenic
TGAAGCTGAGATGCACCATG+CGG 0.749014 7_2:-6131726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGATGAAAAAAAAAAA+AGG - chr7_2:6131367-6131386 None:intergenic 10.0%
!!! TTTTAATTCTATATATGTTT+AGG + chr7_2:6131382-6131401 Msa1045880:intron 10.0%
!!! AAACTCAATTTTACATATAA+GGG - chr7_2:6128686-6128705 None:intergenic 15.0%
!!! AAAACTCAATTTTACATATA+AGG - chr7_2:6128687-6128706 None:intergenic 15.0%
!! AGAATGCATTAAAATATATT+AGG + chr7_2:6129110-6129129 Msa1045880:intron 15.0%
!! ACTTATTATGATTATGAAAA+TGG + chr7_2:6129163-6129182 Msa1045880:intron 15.0%
!!! CAATTTATTTTAATCTTTGT+TGG + chr7_2:6130583-6130602 Msa1045880:intron 15.0%
!! ATACATACCAAATATAAAGA+AGG - chr7_2:6128957-6128976 None:intergenic 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG + chr7_2:6129524-6129543 Msa1045880:intron 20.0%
!!! AATGGTATTTTACAATTTTG+TGG - chr7_2:6129609-6129628 None:intergenic 20.0%
!! TATAACTAGAAATGTTACAT+TGG + chr7_2:6129670-6129689 Msa1045880:intron 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG - chr7_2:6129828-6129847 None:intergenic 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG + chr7_2:6129831-6129850 Msa1045880:intron 20.0%
!! CAAAGTTATTATGATATATC+TGG - chr7_2:6130105-6130124 None:intergenic 20.0%
!!! TTATTTTCTTAAGTTGCTAA+TGG + chr7_2:6130456-6130475 Msa1045880:intron 20.0%
!! GTGTAAATAAATCATGTTTA+TGG - chr7_2:6131297-6131316 None:intergenic 20.0%
!! AAGAATAATATCTCTTACAA+TGG - chr7_2:6131339-6131358 None:intergenic 20.0%
!!! GAATTGGAATTAGTTTTATA+AGG - chr7_2:6131503-6131522 None:intergenic 20.0%
!! TTGATTCAATATTGCTTAAT+TGG + chr7_2:6131894-6131913 Msa1045880:CDS 20.0%
!!! GAACATTAAACTTGATAATT+TGG + chr7_2:6132241-6132260 Msa1045880:CDS 20.0%
!!! TTCTAGCTAGTTTAAATATA+TGG + chr7_2:6132293-6132312 Msa1045880:exon 20.0%
!! GATTTTCCATGAATATTAAC+AGG - chr7_2:6128896-6128915 None:intergenic 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG + chr7_2:6129033-6129052 Msa1045880:intron 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG + chr7_2:6129044-6129063 Msa1045880:intron 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG + chr7_2:6129209-6129228 Msa1045880:intron 25.0%
! ATGCATCACATAAAACATAA+AGG - chr7_2:6129301-6129320 None:intergenic 25.0%
!! TAAGAAATTATTGACTGCAT+TGG - chr7_2:6129343-6129362 None:intergenic 25.0%
! AATGCAGTCAATAATTTCTT+AGG + chr7_2:6129342-6129361 Msa1045880:CDS 25.0%
! TTGCTAATTCACAAAAATGA+GGG - chr7_2:6129580-6129599 None:intergenic 25.0%
! TTTGCTAATTCACAAAAATG+AGG - chr7_2:6129581-6129600 None:intergenic 25.0%
!! ATTCCAAACTTTTATGAACA+GGG + chr7_2:6130133-6130152 Msa1045880:intron 25.0%
! TTCCTAATAGAAGTGATAAT+TGG - chr7_2:6130222-6130241 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG + chr7_2:6130606-6130625 Msa1045880:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG + chr7_2:6130768-6130787 Msa1045880:CDS 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG + chr7_2:6130834-6130853 Msa1045880:CDS 25.0%
!!! ATAGAAAGCATCAAAACTTT+TGG - chr7_2:6131082-6131101 None:intergenic 25.0%
!! TTTAGGAGTTTCGATTTTAT+CGG + chr7_2:6131764-6131783 Msa1045880:CDS 25.0%
! AACCAATAAGCACTTAAATT+TGG - chr7_2:6131873-6131892 None:intergenic 25.0%
!!! CAAGTTTGATTACTTTTACT+GGG + chr7_2:6132127-6132146 Msa1045880:CDS 25.0%
!! TTGATAATTTGGCAAACAAT+GGG + chr7_2:6132252-6132271 Msa1045880:CDS 25.0%
TCTACACCTGTTAATATTCA+TGG + chr7_2:6128887-6128906 Msa1045880:CDS 30.0%
TATTCATGGAAAATCCATTG+AGG + chr7_2:6128901-6128920 Msa1045880:CDS 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG - chr7_2:6128918-6128937 None:intergenic 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG + chr7_2:6128917-6128936 Msa1045880:CDS 30.0%
ATTGCTGCCTTCTTTATATT+TGG + chr7_2:6128947-6128966 Msa1045880:CDS 30.0%
ATCTTACGATATGTGTATGT+TGG + chr7_2:6128988-6129007 Msa1045880:intron 30.0%
TAGGATAAGATCTGAATTCT+TGG + chr7_2:6129063-6129082 Msa1045880:intron 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG + chr7_2:6129212-6129231 Msa1045880:intron 30.0%
AAATGAAATGGCAGAAAGAA+TGG + chr7_2:6129245-6129264 Msa1045880:CDS 30.0%
! TTTTGGACTTTCTGTTAACA+TGG + chr7_2:6129272-6129291 Msa1045880:CDS 30.0%
TGCTAATTCACAAAAATGAG+GGG - chr7_2:6129579-6129598 None:intergenic 30.0%
AACATATCAACAACTTCGAA+TGG - chr7_2:6129627-6129646 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG - chr7_2:6129724-6129743 None:intergenic 30.0%
ATGAGTGACCTAAATTTCAT+AGG + chr7_2:6129817-6129836 Msa1045880:intron 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG + chr7_2:6129942-6129961 Msa1045880:intron 30.0%
!!! GTATGTAGTTTTTTGCGAAT+TGG - chr7_2:6129995-6130014 None:intergenic 30.0%
TTTGTTTCGACTTAGTGAAT+AGG - chr7_2:6130056-6130075 None:intergenic 30.0%
! CATTCCAAACTTTTATGAAC+AGG + chr7_2:6130132-6130151 Msa1045880:intron 30.0%
! ATAATTGGTCACAGTTTTCT+TGG - chr7_2:6130207-6130226 None:intergenic 30.0%
GACCAATTATCACTTCTATT+AGG + chr7_2:6130217-6130236 Msa1045880:CDS 30.0%
TTATGTATAGAACAGTGTAG+AGG - chr7_2:6130279-6130298 None:intergenic 30.0%
GTTCTATACATAACAGCATT+TGG + chr7_2:6130286-6130305 Msa1045880:CDS 30.0%
CAAACTATGAAGAATTGACA+CGG - chr7_2:6130517-6130536 None:intergenic 30.0%
TTCTATCTTTCTGTGACAAT+TGG + chr7_2:6130720-6130739 Msa1045880:CDS 30.0%
GGTCTATGTTCAAATGAAAT+TGG + chr7_2:6130767-6130786 Msa1045880:CDS 30.0%
ATGTTCAAATGAAATTGGGT+TGG + chr7_2:6130772-6130791 Msa1045880:CDS 30.0%
TGTTCAAATGAAATTGGGTT+GGG + chr7_2:6130773-6130792 Msa1045880:CDS 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG - chr7_2:6130928-6130947 None:intergenic 30.0%
CGAAAGAGAAAAGAATCATT+TGG + chr7_2:6130933-6130952 Msa1045880:CDS 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG + chr7_2:6130951-6130970 Msa1045880:CDS 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG + chr7_2:6130952-6130971 Msa1045880:CDS 30.0%
! TGTTTAAGGTATATGCTTGT+TGG - chr7_2:6131581-6131600 None:intergenic 30.0%
TATACCTTAAACACTCACTT+AGG + chr7_2:6131588-6131607 Msa1045880:CDS 30.0%
TTTACCTAAGTGAGTGTTTA+AGG - chr7_2:6131595-6131614 None:intergenic 30.0%
CTAATATGAGGAATACACTT+AGG - chr7_2:6131656-6131675 None:intergenic 30.0%
! CAAAGAATTGGAATTGGTTT+AGG + chr7_2:6131747-6131766 Msa1045880:CDS 30.0%
TAAGCACTTAAATTTGGCAT+TGG - chr7_2:6131867-6131886 None:intergenic 30.0%
TGCCAAATTTAAGTGCTTAT+TGG + chr7_2:6131868-6131887 Msa1045880:CDS 30.0%
!!! ATTTTGCATTGTTGGTTTGT+TGG + chr7_2:6131929-6131948 Msa1045880:CDS 30.0%
! TCTTTTATCTGAATTTCCAG+AGG - chr7_2:6132072-6132091 None:intergenic 30.0%
CAGATAAAAGACAAGAATCT+TGG + chr7_2:6132081-6132100 Msa1045880:CDS 30.0%
!! GCAAGTTTGATTACTTTTAC+TGG + chr7_2:6132126-6132145 Msa1045880:CDS 30.0%
! CTTGATAATTTGGCAAACAA+TGG + chr7_2:6132251-6132270 Msa1045880:CDS 30.0%
! AAAGTGAGGGGTATATTTAA+AGG + chr7_2:6132343-6132362 Msa1045880:three_prime_UTR 30.0%
GTGTGTTAGAGCTAGTAAAA+TGG + chr7_2:6128727-6128746 Msa1045880:exon 35.0%
TCAATGAGCAGAAAGAAACT+TGG + chr7_2:6128803-6128822 Msa1045880:CDS 35.0%
! CATTTTCTTCATTGAGTCTG+AGG + chr7_2:6128826-6128845 Msa1045880:CDS 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG + chr7_2:6128924-6128943 Msa1045880:CDS 35.0%
! GCAGAAAGAATGGCTTATTT+TGG + chr7_2:6129255-6129274 Msa1045880:CDS 35.0%
CTTCACTACAATTTATCTCG+CGG + chr7_2:6129440-6129459 Msa1045880:CDS 35.0%
TTGGAGAGTTAACATTGATG+TGG - chr7_2:6129705-6129724 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG + chr7_2:6129704-6129723 Msa1045880:intron 35.0%
TGTCACATCATAGTCTCTAA+AGG + chr7_2:6129913-6129932 Msa1045880:intron 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG - chr7_2:6129964-6129983 None:intergenic 35.0%
TGAATAGGCAAATTGGTTGT+AGG - chr7_2:6130041-6130060 None:intergenic 35.0%
GACTTAGTGAATAGGCAAAT+TGG - chr7_2:6130048-6130067 None:intergenic 35.0%
AAGCCCTGTTCATAAAAGTT+TGG - chr7_2:6130139-6130158 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG + chr7_2:6130142-6130161 Msa1045880:intron 35.0%
! CAGGTATTGTTAGATATAGC+TGG + chr7_2:6130314-6130333 Msa1045880:intron 35.0%
TGTTAGATATAGCTGGTGAT+TGG + chr7_2:6130321-6130340 Msa1045880:intron 35.0%
! TGAAGTGTTATGACATGTGT+CGG - chr7_2:6130430-6130449 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG + chr7_2:6130633-6130652 Msa1045880:CDS 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG - chr7_2:6130665-6130684 None:intergenic 35.0%
! GTTCAAATGAAATTGGGTTG+GGG + chr7_2:6130774-6130793 Msa1045880:CDS 35.0%
GTACACCTTTGTATAGACAT+AGG + chr7_2:6130856-6130875 Msa1045880:CDS 35.0%
TTTATAGCAGATCTTCTACC+AGG - chr7_2:6130990-6131009 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG + chr7_2:6130989-6131008 Msa1045880:CDS 35.0%
GGTAGAAGATCTGCTATAAA+GGG + chr7_2:6130990-6131009 Msa1045880:CDS 35.0%
TTGCTCATACTGATGATTTC+AGG + chr7_2:6131024-6131043 Msa1045880:CDS 35.0%
GCTCTACAATTGAAACAAGA+TGG + chr7_2:6131420-6131439 Msa1045880:CDS 35.0%
! CTACTTGTGTTACTGTACAA+AGG - chr7_2:6131467-6131486 None:intergenic 35.0%
GACTGAGAGAGTTAGAAATT+CGG - chr7_2:6131559-6131578 None:intergenic 35.0%
GGTAATAGAGAGCTAATATG+AGG - chr7_2:6131668-6131687 None:intergenic 35.0%
TGAAAAGCGGTACAAAAGTT+TGG - chr7_2:6131689-6131708 None:intergenic 35.0%
CAGCTTCAAAGAATTGGAAT+TGG + chr7_2:6131741-6131760 Msa1045880:CDS 35.0%
!! TTTCGATTTTATCGGTTGCT+TGG + chr7_2:6131772-6131791 Msa1045880:CDS 35.0%
!! TTCGATTTTATCGGTTGCTT+GGG + chr7_2:6131773-6131792 Msa1045880:CDS 35.0%
!! GCTGAAGTATTTTGCATTGT+TGG + chr7_2:6131921-6131940 Msa1045880:CDS 35.0%
! CCAATACTTTTCATAGCATC+AGG - chr7_2:6131975-6131994 None:intergenic 35.0%
! CCTGATGCTATGAAAAGTAT+TGG + chr7_2:6131972-6131991 Msa1045880:CDS 35.0%
TTGTCTCAAAACATCAACAC+TGG + chr7_2:6132104-6132123 Msa1045880:CDS 35.0%
CAGCACATAGATACAAATAC+AGG + chr7_2:6132195-6132214 Msa1045880:CDS 35.0%
GACACAACATGTTTATGAGA+TGG + chr7_2:6132217-6132236 Msa1045880:CDS 35.0%
!! TGTATTAGTCCTCTAAAGTG+AGG + chr7_2:6132329-6132348 Msa1045880:three_prime_UTR 35.0%
!! GTATTAGTCCTCTAAAGTGA+GGG + chr7_2:6132330-6132349 Msa1045880:three_prime_UTR 35.0%
!! TATTAGTCCTCTAAAGTGAG+GGG + chr7_2:6132331-6132350 Msa1045880:three_prime_UTR 35.0%
AAATATACCCCTCACTTTAG+AGG - chr7_2:6132341-6132360 None:intergenic 35.0%
CTCTCATTAGATGCATGAGT+AGG + chr7_2:6128640-6128659 Msa1045880:five_prime_UTR 40.0%
TTTCTGCTCATTGAAGTGCA+TGG - chr7_2:6128797-6128816 None:intergenic 40.0%
TCATTGAGTCTGAGGATAGA+AGG + chr7_2:6128834-6128853 Msa1045880:CDS 40.0%
! AGGATAGAAGGATGGCTTTA+GGG + chr7_2:6128846-6128865 Msa1045880:CDS 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG + chr7_2:6128920-6128939 Msa1045880:CDS 40.0%
ACCAACTCAGCAAACAAACA+TGG - chr7_2:6129136-6129155 None:intergenic 40.0%
GGTTACTGCAGGAAATGAAA+TGG + chr7_2:6129233-6129252 Msa1045880:intron 40.0%
GCATTGGATGAACTTGCAAA+AGG - chr7_2:6129327-6129346 None:intergenic 40.0%
TCACAAGCTTCTTCTGTTCT+TGG + chr7_2:6129369-6129388 Msa1045880:CDS 40.0%
!! TTTCTAGCTGATGCATACCT+TGG + chr7_2:6129396-6129415 Msa1045880:CDS 40.0%
CTACAATTTATCTCGCGGTA+TGG + chr7_2:6129445-6129464 Msa1045880:intron 40.0%
ATCTGACAGCTCAAATCGAA+AGG - chr7_2:6129478-6129497 None:intergenic 40.0%
ACATTGATGCTAGATCAACG+TGG + chr7_2:6129861-6129880 Msa1045880:intron 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG - chr7_2:6130202-6130221 None:intergenic 40.0%
! TAGAGGTATGTCATTTGCCA+TGG - chr7_2:6130262-6130281 None:intergenic 40.0%
GACATCGGACACAATACTAA+CGG - chr7_2:6130495-6130514 None:intergenic 40.0%
TGAAGAATTGACACGGACAT+CGG - chr7_2:6130510-6130529 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG - chr7_2:6130639-6130658 None:intergenic 40.0%
AATTGTAGCATTCACAGCAG+TGG + chr7_2:6130746-6130765 Msa1045880:CDS 40.0%
TGGTTCATTGGCAATAGCAA+TGG + chr7_2:6130806-6130825 Msa1045880:CDS 40.0%
GGTTCATTGGCAATAGCAAT+GGG + chr7_2:6130807-6130826 Msa1045880:CDS 40.0%
GGCAACCTATGTCTATACAA+AGG - chr7_2:6130864-6130883 None:intergenic 40.0%
TTGTATAGACATAGGTTGCC+AGG + chr7_2:6130864-6130883 Msa1045880:CDS 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG + chr7_2:6130962-6130981 Msa1045880:CDS 40.0%
!! TTTCTGACACGTGTCACTTT+CGG - chr7_2:6131274-6131293 None:intergenic 40.0%
!! GGTTCCATTGACTTGGATTA+GGG - chr7_2:6131446-6131465 None:intergenic 40.0%
!! AGGTTCCATTGACTTGGATT+AGG - chr7_2:6131447-6131466 None:intergenic 40.0%
! GTACAAAGGTTCCATTGACT+TGG - chr7_2:6131453-6131472 None:intergenic 40.0%
ATGATTGTGCAAGCTGGAAT+TGG - chr7_2:6131519-6131538 None:intergenic 40.0%
TTAAGCATGATTGTGCAAGC+TGG - chr7_2:6131525-6131544 None:intergenic 40.0%
GCATCTCAGCTTCAAAGAAT+TGG + chr7_2:6131735-6131754 Msa1045880:CDS 40.0%
! AGTGTTGTTAAATCAGCCTC+TGG + chr7_2:6132053-6132072 Msa1045880:CDS 40.0%
TGAGTCTGAGGATAGAAGGA+TGG + chr7_2:6128838-6128857 Msa1045880:CDS 45.0%
GAGGATAGAAGGATGGCTTT+AGG + chr7_2:6128845-6128864 Msa1045880:CDS 45.0%
TTAGGGCGTGGTTATACAAG+AGG + chr7_2:6128863-6128882 Msa1045880:CDS 45.0%
! GCCATGTTTGTTTGCTGAGT+TGG + chr7_2:6129132-6129151 Msa1045880:intron 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG + chr7_2:6129372-6129391 Msa1045880:CDS 45.0%
ATGCATACCTTGGACGTTAC+TGG + chr7_2:6129406-6129425 Msa1045880:CDS 45.0%
CTATTGTCCAGTAACGTCCA+AGG - chr7_2:6129416-6129435 None:intergenic 45.0%
ATGCTAGATCAACGTGGTTG+AGG + chr7_2:6129867-6129886 Msa1045880:intron 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG - chr7_2:6130253-6130272 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG + chr7_2:6130295-6130314 Msa1045880:CDS 45.0%
CTGACATTTCTTTCCCGTGT+TGG + chr7_2:6130384-6130403 Msa1045880:intron 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG + chr7_2:6130794-6130813 Msa1045880:CDS 45.0%
TATAGACATAGGTTGCCAGG+TGG + chr7_2:6130867-6130886 Msa1045880:CDS 45.0%
TACACGAGTCGCTCAAGTAT+TGG + chr7_2:6130899-6130918 Msa1045880:CDS 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG - chr7_2:6131063-6131082 None:intergenic 45.0%
ATGGCCCTAATCCAAGTCAA+TGG + chr7_2:6131439-6131458 Msa1045880:CDS 45.0%
ACTTCCAGTTACATGCATGC+CGG + chr7_2:6131620-6131639 Msa1045880:CDS 45.0%
AAAACCGGCATGCATGTAAC+TGG - chr7_2:6131627-6131646 None:intergenic 45.0%
ACACTTAGGCCTGGAAAAAC+CGG - chr7_2:6131642-6131661 None:intergenic 45.0%
ATGAGGAATACACTTAGGCC+TGG - chr7_2:6131651-6131670 None:intergenic 45.0%
CCAGTGATGCGTTTGAAAAG+CGG - chr7_2:6131702-6131721 None:intergenic 45.0%
!! TCTGCTTATGCTGCTTTAGC+TGG + chr7_2:6131996-6132015 Msa1045880:CDS 45.0%
TCACCAGAAGCTCCTCAACA+AGG + chr7_2:6128767-6128786 Msa1045880:CDS 50.0%
CACCAGAAGCTCCTCAACAA+GGG + chr7_2:6128768-6128787 Msa1045880:CDS 50.0%
GCTTCTATGGTGGTTACTGC+AGG + chr7_2:6129222-6129241 Msa1045880:intron 50.0%
ACTGTGAGCCTGCAAAACCA+TGG + chr7_2:6130242-6130261 Msa1045880:CDS 50.0%
TGTCGGCATCATGTCGATGT+CGG - chr7_2:6130413-6130432 None:intergenic 50.0%
!!! TTGGGTTGGGGTTCTGCTTT+TGG + chr7_2:6130786-6130805 Msa1045880:CDS 50.0%
ACTTGAGCGACTCGTGTAAG+AGG - chr7_2:6130897-6130916 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG + chr7_2:6130969-6130988 Msa1045880:CDS 50.0%
!!! ACATGCATGCCGGTTTTTCC+AGG + chr7_2:6131630-6131649 Msa1045880:CDS 50.0%
!! CCGCTTTTCAAACGCATCAC+TGG + chr7_2:6131699-6131718 Msa1045880:CDS 50.0%
TGAAGCTGAGATGCACCATG+CGG - chr7_2:6131729-6131748 None:intergenic 50.0%
!! GCTTATGCTGCTTTAGCTGG+TGG + chr7_2:6131999-6132018 Msa1045880:CDS 50.0%
!! GCTGCTTTAGCTGGTGGATT+AGG + chr7_2:6132005-6132024 Msa1045880:CDS 50.0%
GTCCCTTGTTGAGGAGCTTC+TGG - chr7_2:6128773-6128792 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG - chr7_2:6128782-6128801 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG + chr7_2:6128851-6128870 Msa1045880:CDS 55.0%
TCGATGTCGGACACCAACAC+GGG - chr7_2:6130400-6130419 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG - chr7_2:6130401-6130420 None:intergenic 55.0%
CGTGTAAGAGGACTTCCACC+TGG - chr7_2:6130885-6130904 None:intergenic 55.0%
CGCATCACTGGTCATCCGCA+TGG + chr7_2:6131711-6131730 Msa1045880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6128624 6132419 6128624 ID=Msa1045880;Name=Msa1045880
chr7_2 mRNA 6128624 6132419 6128624 ID=Msa1045880-mRNA-1;Parent=Msa1045880;Name=Msa1045880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=122|1|1|1|1|1|5|121|638
chr7_2 exon 6128624 6128968 6128624 ID=Msa1045880-mRNA-1:exon:1332;Parent=Msa1045880-mRNA-1
chr7_2 exon 6129244 6129461 6129244 ID=Msa1045880-mRNA-1:exon:1333;Parent=Msa1045880-mRNA-1
chr7_2 exon 6130154 6130316 6130154 ID=Msa1045880-mRNA-1:exon:1334;Parent=Msa1045880-mRNA-1
chr7_2 exon 6130628 6131045 6130628 ID=Msa1045880-mRNA-1:exon:1335;Parent=Msa1045880-mRNA-1
chr7_2 exon 6131404 6132419 6131404 ID=Msa1045880-mRNA-1:exon:1336;Parent=Msa1045880-mRNA-1
chr7_2 five_prime_UTR 6128624 6128745 6128624 ID=Msa1045880-mRNA-1:five_prime_utr;Parent=Msa1045880-mRNA-1
chr7_2 CDS 6128746 6128968 6128746 ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2 CDS 6129244 6129461 6129244 ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2 CDS 6130154 6130316 6130154 ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2 CDS 6130628 6131045 6130628 ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2 CDS 6131404 6132298 6131404 ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2 three_prime_UTR 6132299 6132419 6132299 ID=Msa1045880-mRNA-1:three_prime_utr;Parent=Msa1045880-mRNA-1
Gene Sequence

>Msa1045880

ATGGATACTTGTGAGATCAAGTCACCAGAAGCTCCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAATTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTAGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTCACTACAATTTATCTCGCGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACCGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTAGGTAAATTAAAACTTCCAGTTACATGCATGCCGGTTTTTCCAGGCCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCTCAGCTTCAAAGAATTGGAATTGGTTTAGGAGTTTCGATTTTATCGGTTGCTTGGGCTGCTATCTTCGAAAAGTATAGAAGAAACTATGCTATCAAAAATGAATATGAAGCTAGTTTCTTAACACCAATGCCAAATTTAAGTGCTTATTGGTTATTGATTCAATATTGCTTAATTGGTGTAGCTGAAGTATTTTGCATTGTTGGTTTGTTGGAGTTTTTATATGAAGAAGCACCTGATGCTATGAAAAGTATTGGTTCTGCTTATGCTGCTTTAGCTGGTGGATTAGGTTGTTTTTTTGCAACATTTATAAATAGTGTTGTTAAATCAGCCTCTGGAAATTCAGATAAAAGACAAGAATCTTGGTTGTCTCAAAACATCAACACTGGCAAGTTTGATTACTTTTACTGGGTTCTTACAGCTTTAAGCTTAGTCAACTTCTGTGTCTTCTTATATTCAGCACATAGATACAAATACAGGACACAACATGTTTATGAGATGGAGAACATTAAACTTGATAATTTGGCAAACAATGGGAGCTCTACAACAGTTTCTTTCTAG

Protein sequence

>Msa1045880

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEYEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSASGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVNFCVFLYSAHRYKYRTQHVYEMENIKLDNLANNGSSTTVSF*