AlfalfaGEDB | Msa1045880

M. sativa cultivar zhongmu-4 / Msa1045880

KEGG: K14638
GO: -
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045880	XP_003621048.1	98.428	636	10	0	1	636	1	636	0.0	1303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045880	sp\|Q9LYR6\|PTR49_ARATH	77.977	613	132	2	1	612	1	611	0.0	1007

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045880	G7KXR0	98.428	636	10	0	1	636	1	636	0.0	1303

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa1045880	0.834442	2.989992e-56	-8.615850e-47
Msa0003470	Msa1045880	0.880543	5.032561e-70	-8.615850e-47
Msa0004350	Msa1045880	0.827843	1.250225e-54	-8.615850e-47
Msa0004360	Msa1045880	0.832768	7.831022e-56	-8.615850e-47
Msa0005050	Msa1045880	0.813140	2.975354e-51	-8.615850e-47
Msa0007450	Msa1045880	0.840454	8.613088e-58	-8.615850e-47
Msa0008830	Msa1045880	0.822880	1.869489e-53	-8.615850e-47
Msa0008850	Msa1045880	0.808169	3.534428e-50	-8.615850e-47
Msa0012460	Msa1045880	0.801136	1.037911e-48	-8.615850e-47
Msa0017120	Msa1045880	0.865357	6.263829e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045880	MtrunA17_Chr7g0214731	98.428	636	10	0	1	636	1	636	0.0	1303
Msa1045880	MtrunA17_Chr7g0241741	41.997	581	311	12	38	612	1	561	1.22e-147	439
Msa1045880	MtrunA17_Chr4g0005901	41.812	574	310	11	44	612	17	571	5.44e-147	438
Msa1045880	MtrunA17_Chr3g0104011	41.516	554	306	7	63	612	24	563	8.70e-143	427
Msa1045880	MtrunA17_Chr8g0375311	38.992	595	339	9	22	612	8	582	3.47e-140	421
Msa1045880	MtrunA17_Chr8g0375291	39.759	581	326	9	30	606	16	576	4.01e-136	410
Msa1045880	MtrunA17_Chr3g0142101	37.801	582	337	8	51	630	26	584	9.71e-134	404
Msa1045880	MtrunA17_Chr3g0142091	37.997	579	336	7	51	627	17	574	4.17e-129	392
Msa1045880	MtrunA17_Chr8g0375321	38.919	555	318	7	62	610	38	577	4.81e-124	379
Msa1045880	MtrunA17_Chr8g0375351	37.871	573	337	7	42	610	23	580	4.98e-124	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045880	AT5G13400.1	77.977	613	132	2	1	612	1	611	0.0	1007
Msa1045880	AT3G54140.1	40.244	574	321	10	44	612	7	563	1.20e-144	432
Msa1045880	AT3G54140.2	40.244	574	321	10	44	612	7	563	1.20e-144	432
Msa1045880	AT5G01180.2	40.838	573	318	9	44	612	8	563	3.66e-143	428
Msa1045880	AT5G01180.3	40.838	573	318	9	44	612	8	563	3.66e-143	428
Msa1045880	AT5G01180.1	40.838	573	318	9	44	612	8	563	3.66e-143	428
Msa1045880	AT2G02040.1	41.336	554	308	7	63	612	41	581	1.82e-142	427
Msa1045880	AT1G62200.1	40.278	576	319	8	32	602	22	577	7.81e-137	412
Msa1045880	AT1G62200.2	38.512	605	318	9	32	602	22	606	9.06e-131	398
Msa1045880	AT1G62200.3	38.512	605	318	9	32	602	36	620	1.27e-130	398

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Find 116 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGGCATGCATGTAAC+TGG	0.377966	7_2:-6131624	None:intergenic
AAAGTGAGGGGTATATTTAA+AGG	0.343643	7_2:+6132343	Msa1045880:three_prime_UTR
AAATATACCCCTCACTTTAG+AGG	0.270126	7_2:-6132338	None:intergenic
AAATGAAATGGCAGAAAGAA+TGG	0.471770	7_2:+6129245	Msa1045880:CDS
AACCAATAAGCACTTAAATT+TGG	0.204333	7_2:-6131870	None:intergenic
AATGCAGTCAATAATTTCTT+AGG	0.237323	7_2:+6129342	Msa1045880:CDS
AATTGTAGCATTCACAGCAG+TGG	0.669454	7_2:+6130746	Msa1045880:CDS
ACTGTGAGCCTGCAAAACCA+TGG	0.656363	7_2:+6130242	Msa1045880:CDS
ACTTCCAGTTACATGCATGC+CGG	0.579964	7_2:+6131620	Msa1045880:CDS
ACTTGAGCGACTCGTGTAAG+AGG	0.451347	7_2:-6130894	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTACACCTGTTAATATTCA+TGG	+	chr7_2:6128887-6128906	Msa1045880:CDS	30.0%
TATTCATGGAAAATCCATTG+AGG	+	chr7_2:6128901-6128920	Msa1045880:CDS	30.0%
ATTGCTGCCTTCTTTATATT+TGG	+	chr7_2:6128947-6128966	Msa1045880:CDS	30.0%
ATCTTACGATATGTGTATGT+TGG	+	chr7_2:6128988-6129007	Msa1045880:intron	30.0%
TAGGATAAGATCTGAATTCT+TGG	+	chr7_2:6129063-6129082	Msa1045880:intron	30.0%
AAATGAAATGGCAGAAAGAA+TGG	+	chr7_2:6129245-6129264	Msa1045880:CDS	30.0%
TGCTAATTCACAAAAATGAG+GGG	-	chr7_2:6129579-6129598	None:intergenic	30.0%
AACATATCAACAACTTCGAA+TGG	-	chr7_2:6129627-6129646	None:intergenic	30.0%
TTCATAGACAAATTAGTCCT+TGG	-	chr7_2:6129724-6129743	None:intergenic	30.0%
ATGAGTGACCTAAATTTCAT+AGG	+	chr7_2:6129817-6129836	Msa1045880:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	6128624	6132419	6128624	ID=Msa1045880;Name=Msa1045880
chr7_2	mRNA	6128624	6132419	6128624	ID=Msa1045880-mRNA-1;Parent=Msa1045880;Name=Msa1045880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=122\|1\|1\|1\|1\|1\|5\|121\|638
chr7_2	exon	6128624	6128968	6128624	ID=Msa1045880-mRNA-1:exon:1332;Parent=Msa1045880-mRNA-1
chr7_2	exon	6129244	6129461	6129244	ID=Msa1045880-mRNA-1:exon:1333;Parent=Msa1045880-mRNA-1
chr7_2	exon	6130154	6130316	6130154	ID=Msa1045880-mRNA-1:exon:1334;Parent=Msa1045880-mRNA-1
chr7_2	exon	6130628	6131045	6130628	ID=Msa1045880-mRNA-1:exon:1335;Parent=Msa1045880-mRNA-1
chr7_2	exon	6131404	6132419	6131404	ID=Msa1045880-mRNA-1:exon:1336;Parent=Msa1045880-mRNA-1
chr7_2	five_prime_UTR	6128624	6128745	6128624	ID=Msa1045880-mRNA-1:five_prime_utr;Parent=Msa1045880-mRNA-1
chr7_2	CDS	6128746	6128968	6128746	ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2	CDS	6129244	6129461	6129244	ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2	CDS	6130154	6130316	6130154	ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2	CDS	6130628	6131045	6130628	ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2	CDS	6131404	6132298	6131404	ID=Msa1045880-mRNA-1:cds;Parent=Msa1045880-mRNA-1
chr7_2	three_prime_UTR	6132299	6132419	6132299	ID=Msa1045880-mRNA-1:three_prime_utr;Parent=Msa1045880-mRNA-1

Gene Sequence

>Msa1045880

ATGGATACTTGTGAGATCAAGTCACCAGAAGCTCCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAATTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTAGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTCACTACAATTTATCTCGCGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACCGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTAGGTAAATTAAAACTTCCAGTTACATGCATGCCGGTTTTTCCAGGCCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCTCAGCTTCAAAGAATTGGAATTGGTTTAGGAGTTTCGATTTTATCGGTTGCTTGGGCTGCTATCTTCGAAAAGTATAGAAGAAACTATGCTATCAAAAATGAATATGAAGCTAGTTTCTTAACACCAATGCCAAATTTAAGTGCTTATTGGTTATTGATTCAATATTGCTTAATTGGTGTAGCTGAAGTATTTTGCATTGTTGGTTTGTTGGAGTTTTTATATGAAGAAGCACCTGATGCTATGAAAAGTATTGGTTCTGCTTATGCTGCTTTAGCTGGTGGATTAGGTTGTTTTTTTGCAACATTTATAAATAGTGTTGTTAAATCAGCCTCTGGAAATTCAGATAAAAGACAAGAATCTTGGTTGTCTCAAAACATCAACACTGGCAAGTTTGATTACTTTTACTGGGTTCTTACAGCTTTAAGCTTAGTCAACTTCTGTGTCTTCTTATATTCAGCACATAGATACAAATACAGGACACAACATGTTTATGAGATGGAGAACATTAAACTTGATAATTTGGCAAACAATGGGAGCTCTACAACAGTTTCTTTCTAG

Protein sequence

>Msa1045880

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEYEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSASGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVNFCVFLYSAHRYKYRTQHVYEMENIKLDNLANNGSSTTVSF*