Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355680 | XP_003616743.2 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 2.60e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355680 | G7K7C1 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 1.24e-123 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010460 | Msa1355680 | -0.806876 | 6.648750e-50 | -8.615850e-47 |
| Msa0024680 | Msa1355680 | 0.802102 | 6.578343e-49 | -8.615850e-47 |
| Msa0059960 | Msa1355680 | -0.826269 | 2.976288e-54 | -8.615850e-47 |
| Msa1354040 | Msa1355680 | 0.812505 | 4.099493e-51 | -8.615850e-47 |
| Msa1355680 | Msa1429830 | 0.807024 | 6.185242e-50 | -8.615850e-47 |
| Msa0681890 | Msa1355680 | 0.801009 | 1.102039e-48 | -8.615850e-47 |
| Msa0819080 | Msa1355680 | 0.973052 | 8.843715e-136 | -8.615850e-47 |
| Msa0132590 | Msa1355680 | -0.804681 | 1.922174e-49 | -8.615850e-47 |
| Msa0163550 | Msa1355680 | 0.801876 | 7.320087e-49 | -8.615850e-47 |
| Msa0207000 | Msa1355680 | 0.816433 | 5.542849e-52 | -8.615850e-47 |
| Msa0227500 | Msa1355680 | 0.824430 | 8.105400e-54 | -8.615850e-47 |
| Msa1263660 | Msa1355680 | 0.817437 | 3.299209e-52 | -8.615850e-47 |
| Msa1271510 | Msa1355680 | 0.802876 | 4.555197e-49 | -8.615850e-47 |
| Msa1309360 | Msa1355680 | 0.800038 | 1.738429e-48 | -8.615850e-47 |
| Msa1323060 | Msa1355680 | 0.808295 | 3.321939e-50 | -8.615850e-47 |
| Msa0382560 | Msa1355680 | 0.800090 | 1.696571e-48 | -8.615850e-47 |
| Msa1004500 | Msa1355680 | 0.810274 | 1.250574e-50 | -8.615850e-47 |
| Msa1004520 | Msa1355680 | 0.806370 | 8.502933e-50 | -8.615850e-47 |
| Msa1044340 | Msa1355680 | 0.804364 | 2.238118e-49 | -8.615850e-47 |
| Msa1045880 | Msa1355680 | 0.806130 | 9.553668e-50 | -8.615850e-47 |
| Msa1045970 | Msa1355680 | 0.806247 | 9.022728e-50 | -8.615850e-47 |
| Msa1046870 | Msa1355680 | 0.805930 | 1.052233e-49 | -8.615850e-47 |
| Msa1106560 | Msa1355680 | 0.804395 | 2.205183e-49 | -8.615850e-47 |
| Msa0302450 | Msa1355680 | 0.804314 | 2.292958e-49 | -8.615850e-47 |
| Msa0320540 | Msa1355680 | 0.821275 | 4.403693e-53 | -8.615850e-47 |
| Msa0344070 | Msa1355680 | 0.812383 | 4.357960e-51 | -8.615850e-47 |
| Msa1149760 | Msa1355680 | 0.838958 | 2.110324e-57 | -8.615850e-47 |
| Msa1183390 | Msa1355680 | 0.808579 | 2.889352e-50 | -8.615850e-47 |
| Msa1200920 | Msa1355680 | 0.815751 | 7.872964e-52 | -8.615850e-47 |
| Msa0575250 | Msa1355680 | 0.806173 | 9.355532e-50 | -8.615850e-47 |
| Msa0859200 | Msa1355680 | 0.805039 | 1.617744e-49 | -8.615850e-47 |
| Msa0930330 | Msa1355680 | 0.809746 | 1.624887e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355680 | MtrunA17_Chr5g0437991 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 2.39e-127 | 355 |
| Msa1355680 | MtrunA17_Chr3g0106861 | 46.835 | 158 | 82 | 1 | 25 | 180 | 1 | 158 | 1.29e-45 | 147 |
| Msa1355680 | MtrunA17_Chr7g0244441 | 58.537 | 123 | 50 | 1 | 51 | 173 | 6 | 127 | 5.39e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355680 | AT2G40435.1 | 64.103 | 156 | 54 | 2 | 25 | 179 | 1 | 155 | 1.32e-67 | 203 |
| Msa1355680 | AT3G56220.1 | 57.419 | 155 | 63 | 3 | 25 | 177 | 1 | 154 | 5.06e-57 | 176 |
| Msa1355680 | AT2G40435.2 | 65.354 | 127 | 43 | 1 | 25 | 150 | 1 | 127 | 1.45e-55 | 172 |
| Msa1355680 | AT2G40435.3 | 64.341 | 129 | 45 | 1 | 25 | 152 | 1 | 129 | 1.57e-55 | 172 |
| Msa1355680 | AT3G56220.2 | 58.015 | 131 | 48 | 4 | 25 | 151 | 1 | 128 | 1.54e-43 | 142 |
Find 31 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCTGAGGCCATTTAAA+AGG | 0.297363 | tig0015000:-45676 | None:intergenic |
| ATTGGCAGAACTTGAAGATT+TGG | 0.300801 | tig0015000:-47927 | None:intergenic |
| GAAAATATATGCCGGTAGTA+AGG | 0.350569 | tig0015000:+47956 | Msa1355680:three_prime_UTR |
| CTCAATTACCATAGGCAAGT+TGG | 0.394555 | tig0015000:-46524 | None:intergenic |
| CAATACATATAAATAGATAT+TGG | 0.395990 | tig0015000:-47808 | None:intergenic |
| AGAAAACACATGAGATCATA+TGG | 0.396404 | tig0015000:+45632 | None:intergenic |
| GCCTCAGAACTCATCAGAAT+TGG | 0.404408 | tig0015000:+45687 | Msa1355680:CDS |
| TCAATTACCATAGGCAAGTT+GGG | 0.413845 | tig0015000:-46523 | None:intergenic |
| TACAGTGGAAACCCTAGAAA+AGG | 0.442701 | tig0015000:+47090 | Msa1355680:CDS |
| GCTTACTGTGCTGGAAGCTA+GGG | 0.457026 | tig0015000:+47192 | Msa1355680:CDS |
| GGTTGCAATTTACACTTGAT+CGG | 0.468244 | tig0015000:-47787 | None:intergenic |
| TATTGAAAATCTAAAGGAAA+AGG | 0.484456 | tig0015000:+46447 | Msa1355680:CDS |
| AGAGATGAGGCTTACTGTGC+TGG | 0.485736 | tig0015000:+47183 | Msa1355680:CDS |
| GGCTTACTGTGCTGGAAGCT+AGG | 0.491888 | tig0015000:+47191 | Msa1355680:CDS |
| CCACAATCCCAACTTGCCTA+TGG | 0.504234 | tig0015000:+46516 | Msa1355680:CDS |
| AAAGTATATTGAAAATCTAA+AGG | 0.516255 | tig0015000:+46441 | Msa1355680:CDS |
| AGTAAGCCTCATCTCTTCAA+TGG | 0.521158 | tig0015000:-47176 | None:intergenic |
| CTTCCAAGCTGTTGGAGGAG+AGG | 0.526484 | tig0015000:+47237 | Msa1355680:CDS |
| CCATAGGCAAGTTGGGATTG+TGG | 0.527764 | tig0015000:-46516 | None:intergenic |
| ACAGTGGAAACCCTAGAAAA+GGG | 0.541907 | tig0015000:+47091 | Msa1355680:CDS |
| AAAATATATGCCGGTAGTAA+GGG | 0.546912 | tig0015000:+47957 | Msa1355680:three_prime_UTR |
| TTACCTCTCCTCCAACAGCT+TGG | 0.552308 | tig0015000:-47240 | None:intergenic |
| AACAAACGGACCCTTACTAC+CGG | 0.570419 | tig0015000:-47967 | None:intergenic |
| TTGAAGCCATTGAAGAGATG+AGG | 0.583640 | tig0015000:+47170 | Msa1355680:CDS |
| TGATGCATCGATTACGATCG+AGG | 0.609202 | tig0015000:-46419 | None:intergenic |
| GTATTGAAACAAGCATACCT+TGG | 0.629414 | tig0015000:-47147 | None:intergenic |
| ACCAATTCTGATGAGTTCTG+AGG | 0.646466 | tig0015000:-45688 | None:intergenic |
| TGGACTTGTGCAGGTTACAG+TGG | 0.658893 | tig0015000:+47075 | Msa1355680:intron |
| ACAAGCTGTGAAACAAGCCG+TGG | 0.676305 | tig0015000:+47734 | Msa1355680:CDS |
| CAAGCTGTGAAACAAGCCGT+GGG | 0.688309 | tig0015000:+47735 | Msa1355680:CDS |
| CTTATGTAGAATGAAGAACA+AGG | 0.699994 | tig0015000:+47696 | Msa1355680:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTCCAATAATAAAAA+TGG | - | tig0015000:45983-46002 | None:intergenic | 10.0% |
| !! | AAGACTATATATTATTATTA+GGG | - | tig0015000:47569-47588 | None:intergenic | 10.0% |
| !! | ATTAATTCCAATAATAAAAA+TGG | - | tig0015000:45983-46002 | None:intergenic | 10.0% |
| !! | AAGACTATATATTATTATTA+GGG | - | tig0015000:47569-47588 | None:intergenic | 10.0% |
| !!! | GAATATTCTTTTATAGAATT+GGG | - | tig0015000:45923-45942 | None:intergenic | 15.0% |
| !!! | TGAATATTCTTTTATAGAAT+TGG | - | tig0015000:45924-45943 | None:intergenic | 15.0% |
| !! | TAATAAAAAAATAGCAAACT+TGG | - | tig0015000:46010-46029 | None:intergenic | 15.0% |
| !! | AAAGTATATTGAAAATCTAA+AGG | + | tig0015000:46441-46460 | Msa1355680:CDS | 15.0% |
| !! | AACTTATAAACAATTAAACA+TGG | + | tig0015000:46747-46766 | Msa1355680:intron | 15.0% |
| !!! | ATTCACTTTTTTTTTTTTCT+TGG | + | tig0015000:46919-46938 | Msa1355680:intron | 15.0% |
| !!! | TTCACTTTTTTTTTTTTCTT+GGG | + | tig0015000:46920-46939 | Msa1355680:intron | 15.0% |
| !! | GAAGACTATATATTATTATT+AGG | - | tig0015000:47570-47589 | None:intergenic | 15.0% |
| !! | CAATACATATAAATAGATAT+TGG | - | tig0015000:47811-47830 | None:intergenic | 15.0% |
| !!! | GCATATATTTTCATTAAAAT+TGG | - | tig0015000:47948-47967 | None:intergenic | 15.0% |
| !!! | ATTTTAATGAAAATATATGC+CGG | + | tig0015000:47948-47967 | Msa1355680:three_prime_UTR | 15.0% |
| !!! | GAATATTCTTTTATAGAATT+GGG | - | tig0015000:45923-45942 | None:intergenic | 15.0% |
| !!! | TGAATATTCTTTTATAGAAT+TGG | - | tig0015000:45924-45943 | None:intergenic | 15.0% |
| !! | TAATAAAAAAATAGCAAACT+TGG | - | tig0015000:46010-46029 | None:intergenic | 15.0% |
| !! | AAAGTATATTGAAAATCTAA+AGG | + | tig0015000:46441-46460 | Msa1355680:CDS | 15.0% |
| !! | AACTTATAAACAATTAAACA+TGG | + | tig0015000:46747-46766 | Msa1355680:intron | 15.0% |
| !!! | ATTCACTTTTTTTTTTTTCT+TGG | + | tig0015000:46919-46938 | Msa1355680:intron | 15.0% |
| !!! | TTCACTTTTTTTTTTTTCTT+GGG | + | tig0015000:46920-46939 | Msa1355680:intron | 15.0% |
| !! | GAAGACTATATATTATTATT+AGG | - | tig0015000:47570-47589 | None:intergenic | 15.0% |
| !! | CAATACATATAAATAGATAT+TGG | - | tig0015000:47811-47830 | None:intergenic | 15.0% |
| !!! | GCATATATTTTCATTAAAAT+TGG | - | tig0015000:47948-47967 | None:intergenic | 15.0% |
| !!! | ATTTTAATGAAAATATATGC+CGG | + | tig0015000:47948-47967 | Msa1355680:three_prime_UTR | 15.0% |
| !! | AAAGAGAAAACACAAAAAAA+TGG | + | tig0015000:45737-45756 | Msa1355680:CDS | 20.0% |
| !!! | ATCTTTCTTTTTTTTTCCAT+TGG | + | tig0015000:45863-45882 | Msa1355680:intron | 20.0% |
| !! | TTTCATTGAGAATATATTGA+TGG | - | tig0015000:45897-45916 | None:intergenic | 20.0% |
| !!! | TTTTCTAATACTTCTTCTTA+TGG | + | tig0015000:46362-46381 | Msa1355680:intron | 20.0% |
| !! | TATTGAAAATCTAAAGGAAA+AGG | + | tig0015000:46447-46466 | Msa1355680:CDS | 20.0% |
| !!! | GAAATTTGAAATGGATTTTA+TGG | + | tig0015000:47051-47070 | Msa1355680:intron | 20.0% |
| !!! | GAGTAACGTTTTTATATAAA+GGG | - | tig0015000:47455-47474 | None:intergenic | 20.0% |
| !!! | TGAGTAACGTTTTTATATAA+AGG | - | tig0015000:47456-47475 | None:intergenic | 20.0% |
| !! | ATATAAAAACGTTACTCATT+TGG | + | tig0015000:47458-47477 | Msa1355680:intron | 20.0% |
| !! | TATAAAAACGTTACTCATTT+GGG | + | tig0015000:47459-47478 | Msa1355680:intron | 20.0% |
| !! | TTATTATTAGGGTTAAGATT+AGG | - | tig0015000:47558-47577 | None:intergenic | 20.0% |
| !! | TCTTCATTTAATTGTCTATT+AGG | + | tig0015000:47585-47604 | Msa1355680:intron | 20.0% |
| !!! | TTTATCAAGCTTTATTTTGT+TGG | + | tig0015000:47867-47886 | Msa1355680:three_prime_UTR | 20.0% |
| !! | AAAGAGAAAACACAAAAAAA+TGG | + | tig0015000:45737-45756 | Msa1355680:CDS | 20.0% |
| !!! | ATCTTTCTTTTTTTTTCCAT+TGG | + | tig0015000:45863-45882 | Msa1355680:intron | 20.0% |
| !! | TTTCATTGAGAATATATTGA+TGG | - | tig0015000:45897-45916 | None:intergenic | 20.0% |
| !!! | TTTTCTAATACTTCTTCTTA+TGG | + | tig0015000:46362-46381 | Msa1355680:intron | 20.0% |
| !! | TATTGAAAATCTAAAGGAAA+AGG | + | tig0015000:46447-46466 | Msa1355680:CDS | 20.0% |
| !!! | GAAATTTGAAATGGATTTTA+TGG | + | tig0015000:47051-47070 | Msa1355680:intron | 20.0% |
| !!! | GAGTAACGTTTTTATATAAA+GGG | - | tig0015000:47455-47474 | None:intergenic | 20.0% |
| !!! | TGAGTAACGTTTTTATATAA+AGG | - | tig0015000:47456-47475 | None:intergenic | 20.0% |
| !! | ATATAAAAACGTTACTCATT+TGG | + | tig0015000:47458-47477 | Msa1355680:intron | 20.0% |
| !! | TATAAAAACGTTACTCATTT+GGG | + | tig0015000:47459-47478 | Msa1355680:intron | 20.0% |
| !! | TTATTATTAGGGTTAAGATT+AGG | - | tig0015000:47558-47577 | None:intergenic | 20.0% |
| !! | TCTTCATTTAATTGTCTATT+AGG | + | tig0015000:47585-47604 | Msa1355680:intron | 20.0% |
| !!! | TTTATCAAGCTTTATTTTGT+TGG | + | tig0015000:47867-47886 | Msa1355680:three_prime_UTR | 20.0% |
| !! | TCATAACTCTTCCTTTTAAA+TGG | + | tig0015000:45665-45684 | Msa1355680:exon | 25.0% |
| ! | AACACAAAAAAATGGTTTCT+AGG | + | tig0015000:45745-45764 | Msa1355680:CDS | 25.0% |
| ! | ACACAAAAAAATGGTTTCTA+GGG | + | tig0015000:45746-45765 | Msa1355680:CDS | 25.0% |
| !!! | TTTGGGTCCATTTTTATTAT+TGG | + | tig0015000:45973-45992 | Msa1355680:intron | 25.0% |
| ! | GCAGAAAGAATGAATTAATA+AGG | - | tig0015000:46084-46103 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTCAATTACCAT+AGG | - | tig0015000:46535-46554 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGATAGATAGACA+AGG | - | tig0015000:46865-46884 | None:intergenic | 25.0% |
| ! | GAGAAATTGTTTACAATAAC+TGG | - | tig0015000:46957-46976 | None:intergenic | 25.0% |
| ! | TGCAAGTATGAAATTTGAAA+TGG | + | tig0015000:47042-47061 | Msa1355680:intron | 25.0% |
| !!! | TTTGAAATGGATTTTATGGA+TGG | + | tig0015000:47055-47074 | Msa1355680:intron | 25.0% |
| !! | TATAAGAAATCCCTTTTCTA+GGG | - | tig0015000:47104-47123 | None:intergenic | 25.0% |
| !! | TTATAAGAAATCCCTTTTCT+AGG | - | tig0015000:47105-47124 | None:intergenic | 25.0% |
| ! | ACAAAAATATTGACAAGTGA+AGG | - | tig0015000:47418-47437 | None:intergenic | 25.0% |
| ! | ATAAAAACGTTACTCATTTG+GGG | + | tig0015000:47460-47479 | Msa1355680:intron | 25.0% |
| ! | GTACATTGAATCATTGATAT+TGG | + | tig0015000:47509-47528 | Msa1355680:intron | 25.0% |
| !!! | AGCTTTATTTTGTTGGTTTA+AGG | + | tig0015000:47874-47893 | Msa1355680:three_prime_UTR | 25.0% |
| !! | TCATAACTCTTCCTTTTAAA+TGG | + | tig0015000:45665-45684 | Msa1355680:exon | 25.0% |
| ! | AACACAAAAAAATGGTTTCT+AGG | + | tig0015000:45745-45764 | Msa1355680:CDS | 25.0% |
| ! | ACACAAAAAAATGGTTTCTA+GGG | + | tig0015000:45746-45765 | Msa1355680:CDS | 25.0% |
| !!! | TTTGGGTCCATTTTTATTAT+TGG | + | tig0015000:45973-45992 | Msa1355680:intron | 25.0% |
| ! | GCAGAAAGAATGAATTAATA+AGG | - | tig0015000:46084-46103 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTCAATTACCAT+AGG | - | tig0015000:46535-46554 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGATAGATAGACA+AGG | - | tig0015000:46865-46884 | None:intergenic | 25.0% |
| ! | GAGAAATTGTTTACAATAAC+TGG | - | tig0015000:46957-46976 | None:intergenic | 25.0% |
| ! | TGCAAGTATGAAATTTGAAA+TGG | + | tig0015000:47042-47061 | Msa1355680:intron | 25.0% |
| !!! | TTTGAAATGGATTTTATGGA+TGG | + | tig0015000:47055-47074 | Msa1355680:intron | 25.0% |
| !! | TATAAGAAATCCCTTTTCTA+GGG | - | tig0015000:47104-47123 | None:intergenic | 25.0% |
| !! | TTATAAGAAATCCCTTTTCT+AGG | - | tig0015000:47105-47124 | None:intergenic | 25.0% |
| ! | ACAAAAATATTGACAAGTGA+AGG | - | tig0015000:47418-47437 | None:intergenic | 25.0% |
| ! | ATAAAAACGTTACTCATTTG+GGG | + | tig0015000:47460-47479 | Msa1355680:intron | 25.0% |
| ! | GTACATTGAATCATTGATAT+TGG | + | tig0015000:47509-47528 | Msa1355680:intron | 25.0% |
| !!! | AGCTTTATTTTGTTGGTTTA+AGG | + | tig0015000:47874-47893 | Msa1355680:three_prime_UTR | 25.0% |
| GATAAGAGATAGAAAATGCA+GGG | - | tig0015000:45846-45865 | None:intergenic | 30.0% | |
| AGATAAGAGATAGAAAATGC+AGG | - | tig0015000:45847-45866 | None:intergenic | 30.0% | |
| TATACTCTTGTTCCTGATTT+GGG | + | tig0015000:45956-45975 | Msa1355680:intron | 30.0% | |
| AATAAAAATGGACCCAAATC+AGG | - | tig0015000:45971-45990 | None:intergenic | 30.0% | |
| TTTGAACCTAGATATGTATG+TGG | - | tig0015000:46139-46158 | None:intergenic | 30.0% | |
| GCTGATAAGAATATAGGATA+AGG | - | tig0015000:46308-46327 | None:intergenic | 30.0% | |
| CACATAGCTGATAAGAATAT+AGG | - | tig0015000:46314-46333 | None:intergenic | 30.0% | |
| CTATATTCTTATCAGCTATG+TGG | + | tig0015000:46312-46331 | Msa1355680:intron | 30.0% | |
| TATGTGGAGCTTATTTGATA+TGG | + | tig0015000:46328-46347 | Msa1355680:intron | 30.0% | |
| ! | CTTCTTATGGTTTTTATGCA+TGG | + | tig0015000:46375-46394 | Msa1355680:intron | 30.0% |
| ! | TATGGTTTTTATGCATGGTT+TGG | + | tig0015000:46380-46399 | Msa1355680:intron | 30.0% |
| !! | CTGCTTTTGGATAAACAATT+TGG | + | tig0015000:46632-46651 | Msa1355680:intron | 30.0% |
| !! | GGCTCTTTGAATTGTTTTAT+TGG | - | tig0015000:46839-46858 | None:intergenic | 30.0% |
| !!! | TAGGGTCAAGACTTTTTTTT+AGG | - | tig0015000:46879-46898 | None:intergenic | 30.0% |
| ATTCTGCTGCAAGTTATTTA+GGG | - | tig0015000:46897-46916 | None:intergenic | 30.0% | |
| AATTCTGCTGCAAGTTATTT+AGG | - | tig0015000:46898-46917 | None:intergenic | 30.0% | |
| AAGATTAGGCACCATATATA+TGG | - | tig0015000:47544-47563 | None:intergenic | 30.0% | |
| CTTATGTAGAATGAAGAACA+AGG | + | tig0015000:47696-47715 | Msa1355680:intron | 30.0% | |
| !!! | ATTTTTTATTGCTTGTCCCA+CGG | - | tig0015000:47754-47773 | None:intergenic | 30.0% |
| TGGGACAAGCAATAAAAAAT+TGG | + | tig0015000:47754-47773 | Msa1355680:CDS | 30.0% | |
| AAAATATATGCCGGTAGTAA+GGG | + | tig0015000:47957-47976 | Msa1355680:three_prime_UTR | 30.0% | |
| TTCAAATCCATATGATCTCA+CGG | - | tig0015000:45642-45661 | None:intergenic | 30.0% | |
| GATAAGAGATAGAAAATGCA+GGG | - | tig0015000:45846-45865 | None:intergenic | 30.0% | |
| AGATAAGAGATAGAAAATGC+AGG | - | tig0015000:45847-45866 | None:intergenic | 30.0% | |
| TATACTCTTGTTCCTGATTT+GGG | + | tig0015000:45956-45975 | Msa1355680:intron | 30.0% | |
| AATAAAAATGGACCCAAATC+AGG | - | tig0015000:45971-45990 | None:intergenic | 30.0% | |
| TTTGAACCTAGATATGTATG+TGG | - | tig0015000:46139-46158 | None:intergenic | 30.0% | |
| GCTGATAAGAATATAGGATA+AGG | - | tig0015000:46308-46327 | None:intergenic | 30.0% | |
| CACATAGCTGATAAGAATAT+AGG | - | tig0015000:46314-46333 | None:intergenic | 30.0% | |
| CTATATTCTTATCAGCTATG+TGG | + | tig0015000:46312-46331 | Msa1355680:intron | 30.0% | |
| TATGTGGAGCTTATTTGATA+TGG | + | tig0015000:46328-46347 | Msa1355680:intron | 30.0% | |
| ! | CTTCTTATGGTTTTTATGCA+TGG | + | tig0015000:46375-46394 | Msa1355680:intron | 30.0% |
| ! | TATGGTTTTTATGCATGGTT+TGG | + | tig0015000:46380-46399 | Msa1355680:intron | 30.0% |
| !! | CTGCTTTTGGATAAACAATT+TGG | + | tig0015000:46632-46651 | Msa1355680:intron | 30.0% |
| !! | GGCTCTTTGAATTGTTTTAT+TGG | - | tig0015000:46839-46858 | None:intergenic | 30.0% |
| !!! | TAGGGTCAAGACTTTTTTTT+AGG | - | tig0015000:46879-46898 | None:intergenic | 30.0% |
| ATTCTGCTGCAAGTTATTTA+GGG | - | tig0015000:46897-46916 | None:intergenic | 30.0% | |
| AATTCTGCTGCAAGTTATTT+AGG | - | tig0015000:46898-46917 | None:intergenic | 30.0% | |
| AAGATTAGGCACCATATATA+TGG | - | tig0015000:47544-47563 | None:intergenic | 30.0% | |
| CTTATGTAGAATGAAGAACA+AGG | + | tig0015000:47696-47715 | Msa1355680:intron | 30.0% | |
| !!! | ATTTTTTATTGCTTGTCCCA+CGG | - | tig0015000:47754-47773 | None:intergenic | 30.0% |
| TGGGACAAGCAATAAAAAAT+TGG | + | tig0015000:47754-47773 | Msa1355680:CDS | 30.0% | |
| AAAATATATGCCGGTAGTAA+GGG | + | tig0015000:47957-47976 | Msa1355680:three_prime_UTR | 30.0% | |
| ATTGATGGAGAGAAATCCAA+TGG | - | tig0015000:45882-45901 | None:intergenic | 35.0% | |
| CTATACTCTTGTTCCTGATT+TGG | + | tig0015000:45955-45974 | Msa1355680:intron | 35.0% | |
| ! | GGATGAGAGCATAAAAGTAT+AGG | - | tig0015000:46118-46137 | None:intergenic | 35.0% |
| TCTCATCCACATACATATCT+AGG | + | tig0015000:46130-46149 | Msa1355680:intron | 35.0% | |
| AGGATACACATACACTACTA+TGG | - | tig0015000:46288-46307 | None:intergenic | 35.0% | |
| TCAATTACCATAGGCAAGTT+GGG | - | tig0015000:46526-46545 | None:intergenic | 35.0% | |
| ! | GATCAGAATTTGACTGCTTT+TGG | + | tig0015000:46619-46638 | Msa1355680:intron | 35.0% |
| ! | TTTTCGTTAACCGTCTTGAA+GGG | + | tig0015000:46702-46721 | Msa1355680:intron | 35.0% |
| ! | TTTTCATAAGCCCTTCAAGA+CGG | - | tig0015000:46715-46734 | None:intergenic | 35.0% |
| TTGTTAATATCGCGAGCTAA+TGG | - | tig0015000:46782-46801 | None:intergenic | 35.0% | |
| CTCACAAGTGTAATGTTAGT+AGG | + | tig0015000:46803-46822 | Msa1355680:intron | 35.0% | |
| TAGGATAGATAGACAAGGAT+GGG | - | tig0015000:46860-46879 | None:intergenic | 35.0% | |
| TTAGGATAGATAGACAAGGA+TGG | - | tig0015000:46861-46880 | None:intergenic | 35.0% | |
| GTATTGAAACAAGCATACCT+TGG | - | tig0015000:47150-47169 | None:intergenic | 35.0% | |
| ! | AATTTTTGCTTCCAAGCTGT+TGG | + | tig0015000:47229-47248 | Msa1355680:CDS | 35.0% |
| TGATTCAATGTACAGCAACT+CGG | - | tig0015000:47502-47521 | None:intergenic | 35.0% | |
| GGTCATGCAATCCATATATA+TGG | + | tig0015000:47530-47549 | Msa1355680:intron | 35.0% | |
| TCGTTATTGATGAACTTAGC+TGG | - | tig0015000:47619-47638 | None:intergenic | 35.0% | |
| !! | AGAATGACGGAAAGTTTTTG+TGG | + | tig0015000:47673-47692 | Msa1355680:intron | 35.0% |
| GGTTGCAATTTACACTTGAT+CGG | - | tig0015000:47790-47809 | None:intergenic | 35.0% | |
| ATTGGCAGAACTTGAAGATT+TGG | - | tig0015000:47930-47949 | None:intergenic | 35.0% | |
| GAAAATATATGCCGGTAGTA+AGG | + | tig0015000:47956-47975 | Msa1355680:three_prime_UTR | 35.0% | |
| ATTGATGGAGAGAAATCCAA+TGG | - | tig0015000:45882-45901 | None:intergenic | 35.0% | |
| CTATACTCTTGTTCCTGATT+TGG | + | tig0015000:45955-45974 | Msa1355680:intron | 35.0% | |
| ! | GGATGAGAGCATAAAAGTAT+AGG | - | tig0015000:46118-46137 | None:intergenic | 35.0% |
| TCTCATCCACATACATATCT+AGG | + | tig0015000:46130-46149 | Msa1355680:intron | 35.0% | |
| AGGATACACATACACTACTA+TGG | - | tig0015000:46288-46307 | None:intergenic | 35.0% | |
| TCAATTACCATAGGCAAGTT+GGG | - | tig0015000:46526-46545 | None:intergenic | 35.0% | |
| ! | GATCAGAATTTGACTGCTTT+TGG | + | tig0015000:46619-46638 | Msa1355680:intron | 35.0% |
| ! | TTTTCGTTAACCGTCTTGAA+GGG | + | tig0015000:46702-46721 | Msa1355680:intron | 35.0% |
| ! | TTTTCATAAGCCCTTCAAGA+CGG | - | tig0015000:46715-46734 | None:intergenic | 35.0% |
| TTGTTAATATCGCGAGCTAA+TGG | - | tig0015000:46782-46801 | None:intergenic | 35.0% | |
| CTCACAAGTGTAATGTTAGT+AGG | + | tig0015000:46803-46822 | Msa1355680:intron | 35.0% | |
| TAGGATAGATAGACAAGGAT+GGG | - | tig0015000:46860-46879 | None:intergenic | 35.0% | |
| TTAGGATAGATAGACAAGGA+TGG | - | tig0015000:46861-46880 | None:intergenic | 35.0% | |
| GTATTGAAACAAGCATACCT+TGG | - | tig0015000:47150-47169 | None:intergenic | 35.0% | |
| ! | AATTTTTGCTTCCAAGCTGT+TGG | + | tig0015000:47229-47248 | Msa1355680:CDS | 35.0% |
| TGATTCAATGTACAGCAACT+CGG | - | tig0015000:47502-47521 | None:intergenic | 35.0% | |
| GGTCATGCAATCCATATATA+TGG | + | tig0015000:47530-47549 | Msa1355680:intron | 35.0% | |
| TCGTTATTGATGAACTTAGC+TGG | - | tig0015000:47619-47638 | None:intergenic | 35.0% | |
| !! | AGAATGACGGAAAGTTTTTG+TGG | + | tig0015000:47673-47692 | Msa1355680:intron | 35.0% |
| GGTTGCAATTTACACTTGAT+CGG | - | tig0015000:47790-47809 | None:intergenic | 35.0% | |
| ATTGGCAGAACTTGAAGATT+TGG | - | tig0015000:47930-47949 | None:intergenic | 35.0% | |
| GAAAATATATGCCGGTAGTA+AGG | + | tig0015000:47956-47975 | Msa1355680:three_prime_UTR | 35.0% | |
| !! | GAGTTCTGAGGCCATTTAAA+AGG | - | tig0015000:45679-45698 | None:intergenic | 40.0% |
| ACCAATTCTGATGAGTTCTG+AGG | - | tig0015000:45691-45710 | None:intergenic | 40.0% | |
| ! | GAGCATAAAAGTATAGGCAG+TGG | - | tig0015000:46112-46131 | None:intergenic | 40.0% |
| CTCAATTACCATAGGCAAGT+TGG | - | tig0015000:46527-46546 | None:intergenic | 40.0% | |
| ! | GTTTTCGTTAACCGTCTTGA+AGG | + | tig0015000:46701-46720 | Msa1355680:intron | 40.0% |
| !! | TTTTATGGATGGACTTGTGC+AGG | + | tig0015000:47066-47085 | Msa1355680:intron | 40.0% |
| TACAGTGGAAACCCTAGAAA+AGG | + | tig0015000:47090-47109 | Msa1355680:CDS | 40.0% | |
| ACAGTGGAAACCCTAGAAAA+GGG | + | tig0015000:47091-47110 | Msa1355680:CDS | 40.0% | |
| ! | TTTTCTGCAAAAAGCAGCCA+AGG | + | tig0015000:47130-47149 | Msa1355680:CDS | 40.0% |
| TTGAAGCCATTGAAGAGATG+AGG | + | tig0015000:47170-47189 | Msa1355680:CDS | 40.0% | |
| AGTAAGCCTCATCTCTTCAA+TGG | - | tig0015000:47179-47198 | None:intergenic | 40.0% | |
| ! | ATTTGGGGTTCTCGAGAAAA+GGG | + | tig0015000:47475-47494 | Msa1355680:intron | 40.0% |
| !! | GAGTTCTGAGGCCATTTAAA+AGG | - | tig0015000:45679-45698 | None:intergenic | 40.0% |
| ACCAATTCTGATGAGTTCTG+AGG | - | tig0015000:45691-45710 | None:intergenic | 40.0% | |
| ! | GAGCATAAAAGTATAGGCAG+TGG | - | tig0015000:46112-46131 | None:intergenic | 40.0% |
| CTCAATTACCATAGGCAAGT+TGG | - | tig0015000:46527-46546 | None:intergenic | 40.0% | |
| ! | GTTTTCGTTAACCGTCTTGA+AGG | + | tig0015000:46701-46720 | Msa1355680:intron | 40.0% |
| !! | TTTTATGGATGGACTTGTGC+AGG | + | tig0015000:47066-47085 | Msa1355680:intron | 40.0% |
| TACAGTGGAAACCCTAGAAA+AGG | + | tig0015000:47090-47109 | Msa1355680:CDS | 40.0% | |
| ACAGTGGAAACCCTAGAAAA+GGG | + | tig0015000:47091-47110 | Msa1355680:CDS | 40.0% | |
| ! | TTTTCTGCAAAAAGCAGCCA+AGG | + | tig0015000:47130-47149 | Msa1355680:CDS | 40.0% |
| TTGAAGCCATTGAAGAGATG+AGG | + | tig0015000:47170-47189 | Msa1355680:CDS | 40.0% | |
| AGTAAGCCTCATCTCTTCAA+TGG | - | tig0015000:47179-47198 | None:intergenic | 40.0% | |
| ! | ATTTGGGGTTCTCGAGAAAA+GGG | + | tig0015000:47475-47494 | Msa1355680:intron | 40.0% |
| GCCTCAGAACTCATCAGAAT+TGG | + | tig0015000:45687-45706 | Msa1355680:CDS | 45.0% | |
| !! | TGATGCATCGATTACGATCG+AGG | - | tig0015000:46422-46441 | None:intergenic | 45.0% |
| ! | TTTTGCTTCCAAGCTGTTGG+AGG | + | tig0015000:47232-47251 | Msa1355680:CDS | 45.0% |
| ! | CATTTGGGGTTCTCGAGAAA+AGG | + | tig0015000:47474-47493 | Msa1355680:intron | 45.0% |
| CCGTCATTCTCATGCATGAT+GGG | - | tig0015000:47663-47682 | None:intergenic | 45.0% | |
| CCCATCATGCATGAGAATGA+CGG | + | tig0015000:47660-47679 | Msa1355680:intron | 45.0% | |
| TCCGTCATTCTCATGCATGA+TGG | - | tig0015000:47664-47683 | None:intergenic | 45.0% | |
| GCCTCAGAACTCATCAGAAT+TGG | + | tig0015000:45687-45706 | Msa1355680:CDS | 45.0% | |
| !! | TGATGCATCGATTACGATCG+AGG | - | tig0015000:46422-46441 | None:intergenic | 45.0% |
| ! | TTTTGCTTCCAAGCTGTTGG+AGG | + | tig0015000:47232-47251 | Msa1355680:CDS | 45.0% |
| ! | CATTTGGGGTTCTCGAGAAA+AGG | + | tig0015000:47474-47493 | Msa1355680:intron | 45.0% |
| CCGTCATTCTCATGCATGAT+GGG | - | tig0015000:47663-47682 | None:intergenic | 45.0% | |
| CCCATCATGCATGAGAATGA+CGG | + | tig0015000:47660-47679 | Msa1355680:intron | 45.0% | |
| TCCGTCATTCTCATGCATGA+TGG | - | tig0015000:47664-47683 | None:intergenic | 45.0% | |
| !! | CTATAAAAAATTATATAAAT+GGG | - | tig0015000:46564-46583 | None:intergenic | 5.0% |
| !! | TCTATAAAAAATTATATAAA+TGG | - | tig0015000:46565-46584 | None:intergenic | 5.0% |
| !! | AAGAAAAATAATAATAAATA+TGG | - | tig0015000:47840-47859 | None:intergenic | 5.0% |
| !! | CTATAAAAAATTATATAAAT+GGG | - | tig0015000:46564-46583 | None:intergenic | 5.0% |
| !! | TCTATAAAAAATTATATAAA+TGG | - | tig0015000:46565-46584 | None:intergenic | 5.0% |
| !! | AAGAAAAATAATAATAAATA+TGG | - | tig0015000:47840-47859 | None:intergenic | 5.0% |
| ! | CCATAGGCAAGTTGGGATTG+TGG | - | tig0015000:46519-46538 | None:intergenic | 50.0% |
| CCACAATCCCAACTTGCCTA+TGG | + | tig0015000:46516-46535 | Msa1355680:CDS | 50.0% | |
| TGGACTTGTGCAGGTTACAG+TGG | + | tig0015000:47075-47094 | Msa1355680:intron | 50.0% | |
| AGAGATGAGGCTTACTGTGC+TGG | + | tig0015000:47183-47202 | Msa1355680:CDS | 50.0% | |
| GCTTACTGTGCTGGAAGCTA+GGG | + | tig0015000:47192-47211 | Msa1355680:CDS | 50.0% | |
| TTACCTCTCCTCCAACAGCT+TGG | - | tig0015000:47243-47262 | None:intergenic | 50.0% | |
| ACAAGCTGTGAAACAAGCCG+TGG | + | tig0015000:47734-47753 | Msa1355680:CDS | 50.0% | |
| CAAGCTGTGAAACAAGCCGT+GGG | + | tig0015000:47735-47754 | Msa1355680:CDS | 50.0% | |
| ! | CCATAGGCAAGTTGGGATTG+TGG | - | tig0015000:46519-46538 | None:intergenic | 50.0% |
| CCACAATCCCAACTTGCCTA+TGG | + | tig0015000:46516-46535 | Msa1355680:CDS | 50.0% | |
| TGGACTTGTGCAGGTTACAG+TGG | + | tig0015000:47075-47094 | Msa1355680:intron | 50.0% | |
| AGAGATGAGGCTTACTGTGC+TGG | + | tig0015000:47183-47202 | Msa1355680:CDS | 50.0% | |
| GCTTACTGTGCTGGAAGCTA+GGG | + | tig0015000:47192-47211 | Msa1355680:CDS | 50.0% | |
| TTACCTCTCCTCCAACAGCT+TGG | - | tig0015000:47243-47262 | None:intergenic | 50.0% | |
| ACAAGCTGTGAAACAAGCCG+TGG | + | tig0015000:47734-47753 | Msa1355680:CDS | 50.0% | |
| CAAGCTGTGAAACAAGCCGT+GGG | + | tig0015000:47735-47754 | Msa1355680:CDS | 50.0% | |
| GGCTTACTGTGCTGGAAGCT+AGG | + | tig0015000:47191-47210 | Msa1355680:CDS | 55.0% | |
| CTTCCAAGCTGTTGGAGGAG+AGG | + | tig0015000:47237-47256 | Msa1355680:CDS | 55.0% | |
| GGCTTACTGTGCTGGAAGCT+AGG | + | tig0015000:47191-47210 | Msa1355680:CDS | 55.0% | |
| CTTCCAAGCTGTTGGAGGAG+AGG | + | tig0015000:47237-47256 | Msa1355680:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015000 | gene | 45642 | 47983 | 45642 | ID=Msa1355680;Name=Msa1355680 |
| tig0015000 | mRNA | 45642 | 47983 | 45642 | ID=Msa1355680-mRNA-1;Parent=Msa1355680;Name=Msa1355680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=42|1|1|1|1|1|4|183|181 |
| tig0015000 | exon | 45642 | 45833 | 45642 | ID=Msa1355680-mRNA-1:exon:9554;Parent=Msa1355680-mRNA-1 |
| tig0015000 | exon | 46409 | 46537 | 46409 | ID=Msa1355680-mRNA-1:exon:9555;Parent=Msa1355680-mRNA-1 |
| tig0015000 | exon | 47088 | 47258 | 47088 | ID=Msa1355680-mRNA-1:exon:9556;Parent=Msa1355680-mRNA-1 |
| tig0015000 | exon | 47705 | 47983 | 47705 | ID=Msa1355680-mRNA-1:exon:9557;Parent=Msa1355680-mRNA-1 |
| tig0015000 | five_prime_UTR | 45642 | 45683 | 45642 | ID=Msa1355680-mRNA-1:five_prime_utr;Parent=Msa1355680-mRNA-1 |
| tig0015000 | CDS | 45684 | 45833 | 45684 | ID=Msa1355680-mRNA-1:cds;Parent=Msa1355680-mRNA-1 |
| tig0015000 | CDS | 46409 | 46537 | 46409 | ID=Msa1355680-mRNA-1:cds;Parent=Msa1355680-mRNA-1 |
| tig0015000 | CDS | 47088 | 47258 | 47088 | ID=Msa1355680-mRNA-1:cds;Parent=Msa1355680-mRNA-1 |
| tig0015000 | CDS | 47705 | 47800 | 47705 | ID=Msa1355680-mRNA-1:cds;Parent=Msa1355680-mRNA-1 |
| tig0015000 | three_prime_UTR | 47801 | 47983 | 47801 | ID=Msa1355680-mRNA-1:three_prime_utr;Parent=Msa1355680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
