AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439780 MtrunA17_Chr8g0386171 84.345 313 18 1 10 291 50 362 0.0 538
Msa0439780 MtrunA17_Chr8g0386201 50.566 265 117 2 15 266 48 311 1.88e-92 278
Msa0439780 MtrunA17_Chr5g0396351 43.446 267 141 3 6 263 39 304 2.16e-70 221
Msa0439780 MtrunA17_Chr8g0386191 68.571 140 25 5 93 229 54 177 5.17e-54 174
Msa0439780 MtrunA17_Chr4g0026001 30.568 229 147 7 10 231 12 235 1.93e-21 91.3
Msa0439780 MtrunA17_Chr7g0267011 30.612 196 125 4 7 197 3 192 5.48e-20 85.5
Msa0439780 MtrunA17_Chr4g0025971 30.000 230 147 6 10 231 12 235 1.66e-19 85.9
Msa0439780 MtrunA17_Chr4g0025981 32.124 193 120 4 15 202 44 230 6.44e-19 85.1
Msa0439780 MtrunA17_Chr7g0249571 28.906 256 168 8 12 260 38 286 4.99e-18 82.8
Msa0439780 MtrunA17_Chr3g0124471 33.333 204 124 7 1 201 16 210 5.94e-18 82.0
Msa0439780 MtrunA17_Chr4g0054341 31.088 193 124 5 13 202 3 189 6.66e-18 81.6
Msa0439780 MtrunA17_Chr4g0044131 30.052 193 124 4 7 194 3 189 1.26e-17 80.9
Msa0439780 MtrunA17_Chr3g0122901 32.569 218 134 9 8 218 72 283 1.51e-17 81.3
Msa0439780 MtrunA17_Chr6g0459281 29.293 198 125 7 15 204 16 206 1.01e-16 78.2
Msa0439780 MtrunA17_Chr7g0244061 29.952 207 134 6 10 209 27 229 1.61e-16 78.2
Msa0439780 MtrunA17_Chr7g0268591 31.658 199 122 7 7 199 28 218 7.74e-16 76.3
Msa0439780 MtrunA17_Chr7g0270451 33.171 205 130 4 8 209 2 202 1.13e-15 75.1
Msa0439780 MtrunA17_Chr8g0357481 33.000 200 113 7 12 197 14 206 1.35e-15 75.5
Msa0439780 MtrunA17_Chr4g0040371 30.500 200 130 3 10 206 17 210 4.25e-15 73.9
Msa0439780 MtrunA17_Chr4g0045041 27.778 198 132 3 18 204 10 207 4.91e-15 75.1
Msa0439780 MtrunA17_Chr7g0266981 29.557 203 132 5 7 204 8 204 9.20e-15 72.8
Msa0439780 MtrunA17_Chr3g0124481 35.606 132 81 3 72 201 66 195 1.20e-14 72.8
Msa0439780 MtrunA17_Chr4g0045061 26.263 198 135 3 18 204 10 207 1.99e-14 73.6
Msa0439780 MtrunA17_Chr7g0272961 27.907 215 146 4 6 213 34 246 3.56e-14 71.2
Msa0439780 MtrunA17_Chr4g0044111 29.064 203 133 5 7 204 8 204 6.49e-14 70.5
Msa0439780 MtrunA17_Chr6g0459351 26.396 197 138 4 12 204 13 206 7.12e-14 70.1
Msa0439780 MtrunA17_Chr2g0324021 28.509 228 143 6 9 221 3 225 8.02e-14 70.1
Msa0439780 MtrunA17_Chr1g0191751 26.047 215 150 4 6 213 95 307 2.02e-13 69.7
Msa0439780 MtrunA17_Chr7g0252031 29.187 209 117 8 10 203 33 225 3.27e-13 68.6
Msa0439780 MtrunA17_Chr4g0075531 25.500 200 138 5 7 202 2 194 7.36e-13 67.0
Msa0439780 MtrunA17_Chr3g0084871 30.392 204 125 7 15 209 19 214 1.63e-12 66.2
Msa0439780 MtrunA17_Chr7g0270441 29.245 212 132 6 9 211 3 205 1.89e-12 66.2
Msa0439780 MtrunA17_Chr7g0266891 29.500 200 130 5 10 204 5 198 2.18e-12 65.9
Msa0439780 MtrunA17_Chr6g0459261 26.500 200 128 6 15 204 28 218 3.42e-12 65.5
Msa0439780 MtrunA17_Chr4g0028921 26.923 234 146 10 15 229 14 241 5.63e-12 64.7
Msa0439780 MtrunA17_Chr7g0267001 26.425 193 113 5 7 194 3 171 3.36e-11 62.4
Msa0439780 MtrunA17_Chr7g0239491 28.293 205 136 7 3 201 5 204 5.05e-11 62.0
Msa0439780 MtrunA17_Chr2g0287951 29.231 195 121 5 17 200 38 226 5.65e-11 62.4
Msa0439780 MtrunA17_Chr4g0028911 26.923 234 146 10 15 229 14 241 7.97e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439780 AT5G50700.1 51.136 264 116 3 15 266 48 310 3.77e-90 272
Msa0439780 AT5G50600.1 51.136 264 116 3 15 266 48 310 3.77e-90 272
Msa0439780 AT5G50770.1 50.192 261 117 2 15 263 48 307 2.05e-86 262
Msa0439780 AT3G47360.1 50.187 267 132 1 10 276 43 308 2.24e-86 261
Msa0439780 AT3G47350.1 50.763 262 128 1 15 276 47 307 6.17e-86 260
Msa0439780 AT5G50590.1 53.441 247 110 3 15 258 48 292 2.76e-85 258
Msa0439780 AT5G50690.1 53.441 247 110 3 15 258 48 292 2.76e-85 258
Msa0439780 AT3G47350.2 53.488 215 99 1 15 229 47 260 2.38e-72 226
Msa0439780 AT4G10020.1 45.455 264 134 4 6 260 41 303 1.76e-71 225
Msa0439780 AT5G50590.2 57.838 185 77 1 15 199 48 231 3.39e-70 218
Msa0439780 AT5G50690.2 57.838 185 77 1 15 199 48 231 3.39e-70 218
Msa0439780 AT3G47350.3 42.748 262 105 2 15 276 47 263 3.50e-59 190
Msa0439780 AT5G10050.1 31.863 204 112 6 13 205 6 193 1.70e-20 89.4
Msa0439780 AT3G03330.1 29.137 278 187 8 9 278 38 313 3.53e-20 89.4
Msa0439780 AT5G65205.1 31.527 203 112 6 11 202 5 191 5.92e-18 82.4
Msa0439780 AT1G49670.2 32.143 196 122 4 18 202 10 205 1.44e-17 83.2
Msa0439780 AT1G49670.1 32.143 196 122 4 18 202 10 205 1.55e-17 83.2
Msa0439780 AT1G24360.1 31.193 218 140 7 7 218 69 282 3.87e-17 80.5
Msa0439780 AT1G54870.1 30.189 212 137 5 6 209 76 284 9.24e-17 79.7
Msa0439780 AT1G54870.2 30.189 212 137 5 6 209 78 286 9.59e-17 79.7
Msa0439780 AT3G51680.1 31.884 207 129 5 10 207 30 233 1.14e-16 79.0
Msa0439780 AT3G26770.1 30.151 199 130 6 9 203 38 231 1.64e-15 75.9
Msa0439780 AT3G05260.1 28.704 216 142 6 6 213 31 242 5.04e-15 74.3
Msa0439780 AT1G52340.1 30.846 201 130 4 15 209 21 218 6.03e-15 73.9
Msa0439780 AT3G26760.1 29.902 204 134 6 9 208 33 231 1.62e-14 72.8
Msa0439780 AT1G62610.1 27.602 221 145 9 1 209 1 218 3.75e-13 68.6
Msa0439780 AT1G63380.2 26.818 220 146 9 2 209 10 226 5.55e-13 68.2
Msa0439780 AT1G63380.4 26.818 220 146 9 2 209 7 223 5.62e-13 68.2
Msa0439780 AT1G63380.3 26.818 220 146 9 2 209 3 219 5.95e-13 68.2
Msa0439780 AT3G29250.1 27.586 232 160 5 3 231 35 261 7.39e-13 68.2
Msa0439780 AT1G62610.3 27.727 220 144 9 2 209 3 219 8.02e-13 67.8
Msa0439780 AT3G55310.1 26.341 205 143 5 12 209 17 220 9.08e-13 67.4
Msa0439780 AT1G62610.4 27.727 220 144 9 2 209 7 223 9.34e-13 67.4
Msa0439780 AT1G63380.1 27.404 208 138 8 12 209 17 221 2.13e-12 66.6
Msa0439780 AT1G62610.2 28.365 208 136 8 12 209 13 217 2.44e-12 66.2
Msa0439780 AT2G30670.1 32.579 221 135 8 11 222 6 221 3.28e-12 65.9
Msa0439780 AT3G29250.3 28.251 223 152 5 12 231 42 259 3.37e-12 66.2
Msa0439780 AT4G03140.1 30.500 200 125 8 10 203 76 267 3.90e-12 66.2
Msa0439780 AT3G12800.1 41.667 84 48 1 15 98 13 95 4.25e-12 65.9
Msa0439780 AT3G29250.2 28.713 202 136 5 12 210 6 202 5.60e-12 65.1
Msa0439780 AT3G29260.1 28.079 203 137 5 10 209 4 200 2.29e-11 63.2
Msa0439780 AT3G46170.1 25.571 219 149 7 2 209 14 229 2.83e-11 63.2
Msa0439780 AT1G10310.1 28.079 203 142 3 15 216 18 217 5.66e-11 62.0

Find 105 sgRNAs with CRISPR-Local

Find 508 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATATAGCTTACCATAAT+TGG 0.149058 3_3:-6146916 None:intergenic
GTAAATAATGCAGGAGTTTC+TGG 0.163110 3_3:+6146847 Msa0439780:CDS
GCCTGGCCTGTTTATTAAAA+AGG 0.176500 3_3:+6149005 Msa0439780:three_prime_UTR
GTTCTTATTCCCTTTGTATT+TGG 0.182309 3_3:-6141428 None:intergenic
ATTCACAGGATACAAATTTC+TGG 0.215325 3_3:+6147970 Msa0439780:intron
TGAATATCCTCTATCAAAAT+TGG 0.229535 3_3:-6146874 None:intergenic
ACTCTTAGTGTTTAAATCTA+TGG 0.267784 3_3:+6148793 Msa0439780:three_prime_UTR
AACTAAATACAATCCAATTA+TGG 0.273832 3_3:+6146903 Msa0439780:CDS
ACAATATAGACCCTAGTCTA+AGG 0.294072 3_3:-6148875 None:intergenic
TGGGCAGAACGACACATCTT+TGG 0.310099 3_3:+6148647 Msa0439780:CDS
TGGTCTAATATGATGGGGTT+AGG 0.319464 3_3:+6148920 Msa0439780:three_prime_UTR
AATAGGCCATGCCGGCCTAC+AGG 0.330765 3_3:+6148949 Msa0439780:three_prime_UTR
TCTTGTAGCAGTGGCGGATA+TGG 0.332719 3_3:+6146607 Msa0439780:CDS
TCCCCTGATGTTACTATCAT+TGG 0.348900 3_3:+6146644 Msa0439780:CDS
TTAATTGAGTATTAGATGAT+TGG 0.365949 3_3:+6148900 Msa0439780:three_prime_UTR
AGGCCAGGCCAGACTTAAAC+AGG 0.378537 3_3:-6148986 None:intergenic
AACGACACATCTTTGGGCTT+TGG 0.381249 3_3:+6148654 Msa0439780:CDS
TGTATGTGACAAACCCTTCA+TGG 0.382578 3_3:+6148576 Msa0439780:CDS
TGTTTAAGTCTGGCCTGGCC+TGG 0.383301 3_3:+6148988 Msa0439780:three_prime_UTR
GGGCAGAACGACACATCTTT+GGG 0.386518 3_3:+6148648 Msa0439780:CDS
CAAAACAAATATGGCATTGA+AGG 0.386732 3_3:+6148345 Msa0439780:CDS
GGTGCTTTATCCTGAGTTAG+TGG 0.387203 3_3:+6148622 Msa0439780:CDS
ACTGGGGCAGCCTCAGGAAT+TGG 0.397319 3_3:+6145949 Msa0439780:CDS
CAGGATCATAGTGGTTGCTT+CGG 0.397364 3_3:+6148046 Msa0439780:CDS
AATATGATGGGGTTAGGGTT+GGG 0.400102 3_3:+6148926 Msa0439780:three_prime_UTR
CCGCTTACTGTCTTCAACCT+TGG 0.411546 3_3:-6146678 None:intergenic
AATTTCTGGGGAGCAGTTCA+TGG 0.418408 3_3:+6147984 Msa0439780:CDS
GCCTACAGGGGCCTACGGTC+TGG 0.419696 3_3:+6148963 Msa0439780:three_prime_UTR
TTCACAGGATACAAATTTCT+GGG 0.420623 3_3:+6147971 Msa0439780:intron
GCAAAAGCCTTCTTGTAAGA+AGG 0.427375 3_3:+6148676 Msa0439780:CDS
GGTCTAATATGATGGGGTTA+GGG 0.427491 3_3:+6148921 Msa0439780:three_prime_UTR
ATTGAACTTGGTTGGACCAT+TGG 0.429928 3_3:+6148295 Msa0439780:CDS
TGGCCTGTTTAAGTCTGGCC+TGG 0.435902 3_3:+6148983 Msa0439780:three_prime_UTR
ATATATTTAATCTATATAGT+AGG 0.438283 3_3:+6141208 Msa0439780:five_prime_UTR
CGGTCTGGCCTGTTTAAGTC+TGG 0.440467 3_3:+6148978 Msa0439780:three_prime_UTR
ATAGGCCATGCCGGCCTACA+GGG 0.445586 3_3:+6148950 Msa0439780:three_prime_UTR
TTTAATAAACAGGCCAGGCC+AGG 0.445700 3_3:-6149001 None:intergenic
TAATATGATGGGGTTAGGGT+TGG 0.449931 3_3:+6148925 Msa0439780:three_prime_UTR
AGATGATTGGTCTAATATGA+TGG 0.453795 3_3:+6148913 Msa0439780:three_prime_UTR
TTATGTGTACCCTTAGACTA+GGG 0.454797 3_3:+6148865 Msa0439780:three_prime_UTR
TTATCCTGAGTTAGTGGACT+GGG 0.457624 3_3:+6148628 Msa0439780:CDS
CTCTAAGAATTGAACTTGGT+TGG 0.459501 3_3:+6148287 Msa0439780:CDS
AGAAAAGTAGTACTAATCAC+TGG 0.460585 3_3:+6145931 Msa0439780:CDS
ATGGGGTTAGGGTTGGGAAT+AGG 0.466969 3_3:+6148932 Msa0439780:three_prime_UTR
GACCGTAGGCCCCTGTAGGC+CGG 0.469336 3_3:-6148960 None:intergenic
GATGAAACAATCAAACACTT+TGG 0.473040 3_3:+6146707 Msa0439780:CDS
CTAATCACTGGGGCAGCCTC+AGG 0.473197 3_3:+6145943 Msa0439780:CDS
AGGATCATAGTGGTTGCTTC+GGG 0.474071 3_3:+6148047 Msa0439780:CDS
TCAGGATAAAGCACCTGAAA+AGG 0.475371 3_3:-6148614 None:intergenic
AACATCACTTTGAGCCATGA+AGG 0.478716 3_3:-6148590 None:intergenic
GATGATTGGTCTAATATGAT+GGG 0.480461 3_3:+6148914 Msa0439780:three_prime_UTR
ATAGTGGTTGCTTCGGGTTG+TGG 0.481789 3_3:+6148053 Msa0439780:CDS
TAGAGACTTAATCTTGGAAG+TGG 0.486255 3_3:-6148083 None:intergenic
ACATTATAGAGACTTAATCT+TGG 0.493027 3_3:-6148089 None:intergenic
ATTATGGTATCAGGCTAGTA+AGG 0.497359 3_3:+6148240 Msa0439780:intron
GCACCAATGATAGTAACATC+AGG 0.503443 3_3:-6146647 None:intergenic
GTTTCATGCAGTGGATCATC+TGG 0.506526 3_3:+6146825 Msa0439780:intron
CATTCATTTGCTGATCCCAA+TGG 0.513399 3_3:-6148515 None:intergenic
GGCATTACAATCGTCACACC+TGG 0.515479 3_3:+6148316 Msa0439780:CDS
CATTGGTGCAGATGTTTCCA+AGG 0.517111 3_3:+6146661 Msa0439780:CDS
GATCATCTGGTAAATAATGC+AGG 0.522085 3_3:+6146838 Msa0439780:CDS
TAGTCTGCAATGCATTCCAT+TGG 0.525080 3_3:+6148499 Msa0439780:CDS
TGCCGGCCTACAGGGGCCTA+CGG 0.531164 3_3:+6148958 Msa0439780:three_prime_UTR
CAAAAGCCTTCTTGTAAGAA+GGG 0.535473 3_3:+6148677 Msa0439780:CDS
TTTATCCTGAGTTAGTGGAC+TGG 0.536192 3_3:+6148627 Msa0439780:CDS
TAGGCCCCTGTAGGCCGGCA+TGG 0.537117 3_3:-6148955 None:intergenic
GCGGATATGGCAACATCCCT+TGG 0.538338 3_3:+6146620 Msa0439780:CDS
TTTATGTGTACCCTTAGACT+AGG 0.543214 3_3:+6148864 Msa0439780:three_prime_UTR
AGTCTGCAATGCATTCCATT+GGG 0.547551 3_3:+6148500 Msa0439780:CDS
GAGACTCTAAGAATTGAACT+TGG 0.549331 3_3:+6148283 Msa0439780:CDS
AATTATATACCAAATACAAA+GGG 0.551936 3_3:+6141419 Msa0439780:CDS
TGGTTGCTTCGGGTTGTGGA+TGG 0.554870 3_3:+6148057 Msa0439780:CDS
AGATCGCCCTTCTTACAAGA+AGG 0.555115 3_3:-6148683 None:intergenic
CTTGGTGCACACAGAAAGCA+TGG 0.570391 3_3:+6145906 Msa0439780:intron
AAATTATATACCAAATACAA+AGG 0.573217 3_3:+6141418 Msa0439780:CDS
TAGGCCATGCCGGCCTACAG+GGG 0.579585 3_3:+6148951 Msa0439780:three_prime_UTR
GAAAAGTAGTACTAATCACT+GGG 0.580421 3_3:+6145932 Msa0439780:CDS
TATATATGATTATGAACGAA+GGG 0.591454 3_3:-6141380 None:intergenic
CAATATAGACCCTAGTCTAA+GGG 0.591708 3_3:-6148874 None:intergenic
CACCAATGATAGTAACATCA+GGG 0.594536 3_3:-6146646 None:intergenic
ACATCACTTTGAGCCATGAA+GGG 0.597072 3_3:-6148589 None:intergenic
ATAAGACAAAATTACTCTCG+TGG 0.605015 3_3:+6148745 Msa0439780:exon
CCAAGGTTGAAGACAGTAAG+CGG 0.605037 3_3:+6146678 Msa0439780:CDS
GGGTTGGGAATAGGCCATGC+CGG 0.605568 3_3:+6148941 Msa0439780:three_prime_UTR
TCTGCCCAGTCCACTAACTC+AGG 0.607396 3_3:-6148632 None:intergenic
AGAGACTTAATCTTGGAAGT+GGG 0.610882 3_3:-6148082 None:intergenic
AGTAACATCAGGGGAACCAA+GGG 0.611098 3_3:-6146636 None:intergenic
AAAAGAGAATCTTGTAGCAG+TGG 0.618412 3_3:+6146598 Msa0439780:CDS
ATTATTCTGTCTTAAGCACG+TGG 0.620818 3_3:-6148724 None:intergenic
GCTTATGAGTATGCTAAGAG+AGG 0.621046 3_3:+6146548 Msa0439780:CDS
TAGTAACATCAGGGGAACCA+AGG 0.622054 3_3:-6146637 None:intergenic
CAGCAAAGGCAGGATCATAG+TGG 0.623837 3_3:+6148037 Msa0439780:CDS
AGAGAATCTTGTAGCAGTGG+CGG 0.625730 3_3:+6146601 Msa0439780:CDS
TTATATATGATTATGAACGA+AGG 0.630673 3_3:-6141381 None:intergenic
TCACAGGATACAAATTTCTG+GGG 0.631294 3_3:+6147972 Msa0439780:intron
ATGATTGGTCTAATATGATG+GGG 0.634277 3_3:+6148915 Msa0439780:three_prime_UTR
GCCAGACCGTAGGCCCCTGT+AGG 0.651838 3_3:-6148964 None:intergenic
GAGTACCTCGCCAATTCCTG+AGG 0.653628 3_3:-6145959 None:intergenic
GGCAGCCTCAGGAATTGGCG+AGG 0.661286 3_3:+6145954 Msa0439780:CDS
ACTTAAACAGGCCAGACCGT+AGG 0.667799 3_3:-6148974 None:intergenic
TGTGACGATTGTAATGCCAA+TGG 0.709012 3_3:-6148311 None:intergenic
ATTGAAGGCATATGAAGACG+AGG 0.713291 3_3:+6148360 Msa0439780:CDS
ACCAATGATAGTAACATCAG+GGG 0.719017 3_3:-6146645 None:intergenic
AGTATGCTAAGAGAGGAGCA+AGG 0.743793 3_3:+6146555 Msa0439780:CDS
AAAAGTAGTACTAATCACTG+GGG 0.769611 3_3:+6145933 Msa0439780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTAATCTATATAGT+AGG + chr3_3:6141208-6141227 Msa0439780:five_prime_UTR 10.0%
!!! TATATAATTTTTTTCATTGT+GGG - chr3_3:6141408-6141427 None:intergenic 10.0%
!! TATTTAATTAATGATGTATA+TGG + chr3_3:6143940-6143959 Msa0439780:intron 10.0%
!!! ATCTTTTTTACTATTTATTT+TGG + chr3_3:6144141-6144160 Msa0439780:intron 10.0%
!!! AGATTTTAGAATTTAAAAAT+TGG - chr3_3:6144941-6144960 None:intergenic 10.0%
!!! ATTAAATTTTACATTTTTCA+TGG - chr3_3:6145271-6145290 None:intergenic 10.0%
!!! TTTTTATGAAAAAAAGATTT+AGG - chr3_3:6146382-6146401 None:intergenic 10.0%
!!! TTTTAACTTTTTATTTTCTT+CGG + chr3_3:6148830-6148849 Msa0439780:three_prime_UTR 10.0%
!!! GTATATAATTTTTTTCATTG+TGG - chr3_3:6141409-6141428 None:intergenic 15.0%
!! AAATTATATACCAAATACAA+AGG + chr3_3:6141418-6141437 Msa0439780:CDS 15.0%
!! AATTATATACCAAATACAAA+GGG + chr3_3:6141419-6141438 Msa0439780:CDS 15.0%
!! AAAAAAAGTTGAGTTAATAA+AGG - chr3_3:6141489-6141508 None:intergenic 15.0%
!!! ATTTAAGATACATTTAAGAA+GGG + chr3_3:6141558-6141577 Msa0439780:intron 15.0%
!! TATTTGCATGTTAAAAAAAA+TGG - chr3_3:6141790-6141809 None:intergenic 15.0%
!! TAACATTAATTGAGAAATAT+CGG + chr3_3:6142052-6142071 Msa0439780:intron 15.0%
!!! TTTTTTTTTAAAATAGAAGG+AGG - chr3_3:6142307-6142326 None:intergenic 15.0%
!!! AAAAAAGTTATTTTCCATAT+TGG + chr3_3:6142329-6142348 Msa0439780:intron 15.0%
!! AGATGAAATTAAATTGAATT+AGG + chr3_3:6143067-6143086 Msa0439780:intron 15.0%
!! AATCAAAGTTAATAAGAAAA+AGG + chr3_3:6143121-6143140 Msa0439780:intron 15.0%
!! ATCAAAGTTAATAAGAAAAA+GGG + chr3_3:6143122-6143141 Msa0439780:intron 15.0%
!!! ATTCAACTTTTTTTTTTTCT+GGG - chr3_3:6143591-6143610 None:intergenic 15.0%
!!! AATTCAACTTTTTTTTTTTC+TGG - chr3_3:6143592-6143611 None:intergenic 15.0%
!!! TTTTTACTTATAATAGTGAT+CGG - chr3_3:6143905-6143924 None:intergenic 15.0%
!!! AATAATTTAAATTTTTCGAG+TGG + chr3_3:6144565-6144584 Msa0439780:intron 15.0%
!!! ATAATTTAAATTTTTCGAGT+GGG + chr3_3:6144566-6144585 Msa0439780:intron 15.0%
!!! GATTTTATATAATTTTGTGT+CGG - chr3_3:6144637-6144656 None:intergenic 15.0%
!! ATTTAAAAATTAACGATCAT+GGG - chr3_3:6144672-6144691 None:intergenic 15.0%
!! AATTTAAAAATTAACGATCA+TGG - chr3_3:6144673-6144692 None:intergenic 15.0%
!!! GTTAATTTTTAAATTTTTCC+AGG + chr3_3:6144678-6144697 Msa0439780:intron 15.0%
!! TATTACATTAAATGACTATA+AGG + chr3_3:6144801-6144820 Msa0439780:intron 15.0%
!!! AAGAAATTCTCTAAAAATAT+TGG - chr3_3:6144868-6144887 None:intergenic 15.0%
!!! TTTTAGAATTTAAAAATTGG+AGG - chr3_3:6144938-6144957 None:intergenic 15.0%
!! AATACATAATAATATATGCA+AGG + chr3_3:6145035-6145054 Msa0439780:intron 15.0%
!! ATAATGTTTAAAAATAAGTG+AGG - chr3_3:6146197-6146216 None:intergenic 15.0%
!!! CACTTATTTTTAAACATTAT+TGG + chr3_3:6146197-6146216 Msa0439780:intron 15.0%
!! AATTTCTTGATAAAATCTAA+GGG - chr3_3:6147087-6147106 None:intergenic 15.0%
!! CTAAATGAAGAATAAAATAA+AGG - chr3_3:6147364-6147383 None:intergenic 15.0%
!! TTTCTTTAGTAAAAAAAAGA+AGG - chr3_3:6147424-6147443 None:intergenic 15.0%
!!! TCTTTTTTTTACTAAAGAAA+AGG + chr3_3:6147424-6147443 Msa0439780:intron 15.0%
!!! AAATTAAACTGATTTTTTGA+AGG + chr3_3:6147538-6147557 Msa0439780:intron 15.0%
!!! ATGGGATTTTTTTTTTTTTA+GGG - chr3_3:6147601-6147620 None:intergenic 15.0%
!!! AATGGGATTTTTTTTTTTTT+AGG - chr3_3:6147602-6147621 None:intergenic 15.0%
!! ATATATACCTATATCTAAAT+GGG - chr3_3:6147619-6147638 None:intergenic 15.0%
!! TATATATACCTATATCTAAA+TGG - chr3_3:6147620-6147639 None:intergenic 15.0%
!! TATATATGATTATGAACGAA+GGG - chr3_3:6141383-6141402 None:intergenic 20.0%
!! TTATATATGATTATGAACGA+AGG - chr3_3:6141384-6141403 None:intergenic 20.0%
!! TTAAATGTCATAGTGAATAA+AGG - chr3_3:6141544-6141563 None:intergenic 20.0%
!!! CATTTAAGATACATTTAAGA+AGG + chr3_3:6141557-6141576 Msa0439780:intron 20.0%
!! AACATTAATTGAGAAATATC+GGG + chr3_3:6142053-6142072 Msa0439780:intron 20.0%
!!! ATTGCATTTTTTTAAGTTCA+AGG - chr3_3:6142425-6142444 None:intergenic 20.0%
!! TTAAATTGAATTAGGTGAAA+AGG + chr3_3:6143075-6143094 Msa0439780:intron 20.0%
!! TAAATTGAATTAGGTGAAAA+GGG + chr3_3:6143076-6143095 Msa0439780:intron 20.0%
!! TTAAAAATAGGAATCAAAAG+TGG - chr3_3:6143472-6143491 None:intergenic 20.0%
!! ATAATACAAAGACTATACAT+GGG - chr3_3:6143500-6143519 None:intergenic 20.0%
!! AATAATACAAAGACTATACA+TGG - chr3_3:6143501-6143520 None:intergenic 20.0%
!! ATTTAACATTAATGTGAACA+TGG - chr3_3:6143875-6143894 None:intergenic 20.0%
!! TCAATTGAATAGAAAATTGA+GGG - chr3_3:6143973-6143992 None:intergenic 20.0%
!! ATTTACAAGAACTAAAATGT+TGG - chr3_3:6144067-6144086 None:intergenic 20.0%
!!! TATTTTTTGTTGATCAACTT+CGG + chr3_3:6144206-6144225 Msa0439780:intron 20.0%
!!! AATTTTTAAATTTTTCCAGG+TGG + chr3_3:6144681-6144700 Msa0439780:intron 20.0%
!!! ATTTTTAAATTTTTCCAGGT+GGG + chr3_3:6144682-6144701 Msa0439780:intron 20.0%
!!! GTCTTTTTTTTTTGTTTTTG+TGG - chr3_3:6145083-6145102 None:intergenic 20.0%
!!! TTACATTTTTCATGGTTTTT+TGG - chr3_3:6145263-6145282 None:intergenic 20.0%
!!! ACTCCATTAATAATCTATTT+TGG + chr3_3:6145987-6146006 Msa0439780:intron 20.0%
!! TCACCAAAATAGATTATTAA+TGG - chr3_3:6145993-6146012 None:intergenic 20.0%
!! ACTATACCAAATAAAACTTT+AGG + chr3_3:6146466-6146485 Msa0439780:intron 20.0%
!! CTATACCAAATAAAACTTTA+GGG + chr3_3:6146467-6146486 Msa0439780:intron 20.0%
!! TATACCAAATAAAACTTTAG+GGG + chr3_3:6146468-6146487 Msa0439780:intron 20.0%
!!! ATAAAACCTTTCTCTAAAAA+AGG + chr3_3:6146520-6146539 Msa0439780:intron 20.0%
!! AACTAAATACAATCCAATTA+TGG + chr3_3:6146903-6146922 Msa0439780:CDS 20.0%
!!! ATCATTGCTCTTTTTTTAAA+TGG - chr3_3:6146973-6146992 None:intergenic 20.0%
!! CAATTTCTTGATAAAATCTA+AGG - chr3_3:6147088-6147107 None:intergenic 20.0%
!! AAAAAATCCCATTTAGATAT+AGG + chr3_3:6147609-6147628 Msa0439780:intron 20.0%
!! TATTTAACAAAACCTATGAT+CGG + chr3_3:6147722-6147741 Msa0439780:intron 20.0%
!! TAGTTATATACTATGATACA+AGG + chr3_3:6147788-6147807 Msa0439780:intron 20.0%
!!! ACAGTTTAAGACTATTATTT+TGG - chr3_3:6148210-6148229 None:intergenic 20.0%
!!! ATATTTGTTTTGATAAAACC+AGG - chr3_3:6148337-6148356 None:intergenic 20.0%
!!! TGGTTTTATCAAAACAAATA+TGG + chr3_3:6148336-6148355 Msa0439780:CDS 20.0%
!! AAGTTAAAAACATAAGTGAA+GGG - chr3_3:6148819-6148838 None:intergenic 20.0%
!! AAAGTTAAAAACATAAGTGA+AGG - chr3_3:6148820-6148839 None:intergenic 20.0%
!! TTAATTGAGTATTAGATGAT+TGG + chr3_3:6148900-6148919 Msa0439780:three_prime_UTR 20.0%
! TCAAAAATCAAGATACGATA+CGG + chr3_3:6141711-6141730 Msa0439780:intron 25.0%
! AAACAAAAGAAACCAATCAT+AGG + chr3_3:6141817-6141836 Msa0439780:intron 25.0%
! AGTGCTATATTATATCCAAA+AGG + chr3_3:6141937-6141956 Msa0439780:intron 25.0%
!!! TGAATATAGTGCTGTTTTTT+TGG - chr3_3:6141991-6142010 None:intergenic 25.0%
! ACATTAATTGAGAAATATCG+GGG + chr3_3:6142054-6142073 Msa0439780:intron 25.0%
! TATCGGTGTATGATAATTAT+CGG + chr3_3:6142081-6142100 Msa0439780:intron 25.0%
!!! TGTTTTGATGAGTTATGTTA+TGG - chr3_3:6143173-6143192 None:intergenic 25.0%
! TAACATAACTCATCAAAACA+AGG + chr3_3:6143173-6143192 Msa0439780:intron 25.0%
! TGGTGATTGAAAATTTCATA+GGG - chr3_3:6143452-6143471 None:intergenic 25.0%
!! TCATGATTTTGTTGAGTTTT+TGG - chr3_3:6143683-6143702 None:intergenic 25.0%
! CTCAATTGAATAGAAAATTG+AGG - chr3_3:6143974-6143993 None:intergenic 25.0%
! AAATGAACTATCTACTACAT+TGG + chr3_3:6144083-6144102 Msa0439780:intron 25.0%
!! ATTTTTGTGATGCTTATACT+TGG - chr3_3:6144464-6144483 None:intergenic 25.0%
!! TTAACGTTTATAGTTTTTCG+CGG - chr3_3:6144507-6144526 None:intergenic 25.0%
!!! TATAATTTTGTGTCGGTTTT+GGG - chr3_3:6144630-6144649 None:intergenic 25.0%
!!! ATATAATTTTGTGTCGGTTT+TGG - chr3_3:6144631-6144650 None:intergenic 25.0%
!!! TAATAAGTTAAGTTGATCAG+TGG - chr3_3:6144740-6144759 None:intergenic 25.0%
!! ATATTGGCAAACAACTATTT+TGG - chr3_3:6144852-6144871 None:intergenic 25.0%
!!! TTAAAAATTGGAGGCATTTT+CGG - chr3_3:6144929-6144948 None:intergenic 25.0%
! TTGGATATTAGAATCCAAAA+TGG - chr3_3:6145175-6145194 None:intergenic 25.0%
!!! TTTGAAGTACTTGTTTTGTT+TGG - chr3_3:6145194-6145213 None:intergenic 25.0%
!! TGTAAGGATTTTTACACATT+CGG - chr3_3:6145352-6145371 None:intergenic 25.0%
! GCTTATTTATGCAAAAAACT+TGG + chr3_3:6145888-6145907 Msa0439780:intron 25.0%
! AATCTCATTGCTTAAAAATC+AGG + chr3_3:6146274-6146293 Msa0439780:intron 25.0%
!!! GTTTTATTAGCAACATTAAC+TGG - chr3_3:6146507-6146526 None:intergenic 25.0%
! TGAATATCCTCTATCAAAAT+TGG - chr3_3:6146877-6146896 None:intergenic 25.0%
! AACATATAGCTTACCATAAT+TGG - chr3_3:6146919-6146938 None:intergenic 25.0%
! ATATGTTCTGCTTCAATTAA+TGG + chr3_3:6146932-6146951 Msa0439780:intron 25.0%
!! TATTGGCTAACATTAATTTC+AGG - chr3_3:6147112-6147131 None:intergenic 25.0%
!!! ATTGCACTCTGTTTTTTTTA+AGG - chr3_3:6147270-6147289 None:intergenic 25.0%
!! TAATATCTAAAATCCCAATG+CGG + chr3_3:6147638-6147657 Msa0439780:intron 25.0%
! TAGCTACCTAAACTTTAATT+TGG - chr3_3:6147666-6147685 None:intergenic 25.0%
! TTAAAGTTTAGGTAGCTATT+AGG + chr3_3:6147668-6147687 Msa0439780:intron 25.0%
! ATAAAATCATGAATGACCAA+GGG - chr3_3:6147838-6147857 None:intergenic 25.0%
! TATAAAATCATGAATGACCA+AGG - chr3_3:6147839-6147858 None:intergenic 25.0%
! AATTGAACTACATCAAAAGT+CGG + chr3_3:6147893-6147912 Msa0439780:intron 25.0%
! CTTAATAACTATCTCAAAAG+TGG + chr3_3:6147927-6147946 Msa0439780:intron 25.0%
! ACATTATAGAGACTTAATCT+TGG - chr3_3:6148092-6148111 None:intergenic 25.0%
! AACTGTGATTATATGCATTA+TGG + chr3_3:6148224-6148243 Msa0439780:intron 25.0%
! ATTATATGCATTATGGTATC+AGG + chr3_3:6148231-6148250 Msa0439780:intron 25.0%
! TTGGTTGAGGTTTAAATTAA+AGG - chr3_3:6148420-6148439 None:intergenic 25.0%
! TTCACAACATTAACTATTGT+AGG + chr3_3:6148475-6148494 Msa0439780:intron 25.0%
! ACTCTTAGTGTTTAAATCTA+TGG + chr3_3:6148793-6148812 Msa0439780:three_prime_UTR 25.0%
AAAGAAGTAAAAAGTAACGG+GGG - chr3_3:6141360-6141379 None:intergenic 30.0%
GAAAGAAGTAAAAAGTAACG+GGG - chr3_3:6141361-6141380 None:intergenic 30.0%
GGAAAGAAGTAAAAAGTAAC+GGG - chr3_3:6141362-6141381 None:intergenic 30.0%
GGGAAAGAAGTAAAAAGTAA+CGG - chr3_3:6141363-6141382 None:intergenic 30.0%
GTTCTTATTCCCTTTGTATT+TGG - chr3_3:6141431-6141450 None:intergenic 30.0%
! ACAAAGGGAATAAGAACTTT+TGG + chr3_3:6141434-6141453 Msa0439780:intron 30.0%
! CAAAGGGAATAAGAACTTTT+GGG + chr3_3:6141435-6141454 Msa0439780:intron 30.0%
GGGATATATTGTGTATGTAA+TGG - chr3_3:6141902-6141921 None:intergenic 30.0%
! TGGATATAATATAGCACTGA+TGG - chr3_3:6141935-6141954 None:intergenic 30.0%
ATATCCAAAAGGAACATTGT+TGG + chr3_3:6141948-6141967 Msa0439780:intron 30.0%
!!! TGTCATCCATTTTGAAGTAT+TGG + chr3_3:6142238-6142257 Msa0439780:intron 30.0%
!!! GTCATCCATTTTGAAGTATT+GGG + chr3_3:6142239-6142258 Msa0439780:intron 30.0%
!!! TCATCCATTTTGAAGTATTG+GGG + chr3_3:6142240-6142259 Msa0439780:intron 30.0%
TTTCCATATTGGTGAACAAA+TGG + chr3_3:6142340-6142359 Msa0439780:intron 30.0%
TCAAAAAATGTTGATGTGAC+TGG - chr3_3:6142385-6142404 None:intergenic 30.0%
!!! AGTCACATCAACATTTTTTG+AGG + chr3_3:6142384-6142403 Msa0439780:intron 30.0%
!!! GTCACATCAACATTTTTTGA+GGG + chr3_3:6142385-6142404 Msa0439780:intron 30.0%
!!! TCACATCAACATTTTTTGAG+GGG + chr3_3:6142386-6142405 Msa0439780:intron 30.0%
! TTATTTGCTAGATCATTCGA+TGG - chr3_3:6142647-6142666 None:intergenic 30.0%
ATCGAATGATCTAGCAAATA+AGG + chr3_3:6142646-6142665 Msa0439780:intron 30.0%
TATAGTATAGATCTAGTAGC+TGG + chr3_3:6142672-6142691 Msa0439780:intron 30.0%
ACTTGTCTATTTCCTATTGA+TGG + chr3_3:6142702-6142721 Msa0439780:intron 30.0%
! GAACGCCTATGAAAATTTTA+CGG + chr3_3:6142731-6142750 Msa0439780:intron 30.0%
! AACGCCTATGAAAATTTTAC+GGG + chr3_3:6142732-6142751 Msa0439780:intron 30.0%
! ACAACCCGTAAAATTTTCAT+AGG - chr3_3:6142739-6142758 None:intergenic 30.0%
AAGTAGCTTTCTAAATAGGA+GGG - chr3_3:6142786-6142805 None:intergenic 30.0%
ATGGAAGTAGCTTTCTAAAT+AGG - chr3_3:6142790-6142809 None:intergenic 30.0%
! TCAAGTTCACTTGTTACATT+GGG - chr3_3:6142888-6142907 None:intergenic 30.0%
! TTCAAGTTCACTTGTTACAT+TGG - chr3_3:6142889-6142908 None:intergenic 30.0%
GTGGTGATTGAAAATTTCAT+AGG - chr3_3:6143453-6143472 None:intergenic 30.0%
! ACATGGGTTGACTTAAAAAT+AGG - chr3_3:6143484-6143503 None:intergenic 30.0%
! TCTTATTGATAGTAGTTGGA+TGG - chr3_3:6143812-6143831 None:intergenic 30.0%
! CCAATCTTATTGATAGTAGT+TGG - chr3_3:6143816-6143835 None:intergenic 30.0%
CCAACTACTATCAATAAGAT+TGG + chr3_3:6143813-6143832 Msa0439780:intron 30.0%
ACATGGATGACTTCAATTTA+TGG - chr3_3:6143858-6143877 None:intergenic 30.0%
TTACTTATAATAGTGATCGG+AGG - chr3_3:6143902-6143921 None:intergenic 30.0%
GGAGTTTAACGAAAAAGTTA+GGG + chr3_3:6144332-6144351 Msa0439780:intron 30.0%
TCTCTAAGTTAATAGTCGTA+AGG - chr3_3:6144417-6144436 None:intergenic 30.0%
!!! TTTTTTGTTTTTGTGGTGAG+CGG - chr3_3:6145076-6145095 None:intergenic 30.0%
AAAGTGCAAAAAAATTGCCA+CGG + chr3_3:6145110-6145129 Msa0439780:intron 30.0%
! GAGAGTTTGAAGTATGTAAA+GGG - chr3_3:6145235-6145254 None:intergenic 30.0%
! AGAGAGTTTGAAGTATGTAA+AGG - chr3_3:6145236-6145255 None:intergenic 30.0%
! AATTTTGCCAATTTTGTTGG+GGG - chr3_3:6145566-6145585 None:intergenic 30.0%
! CAATTTTGCCAATTTTGTTG+GGG - chr3_3:6145567-6145586 None:intergenic 30.0%
! CCAATTTTGCCAATTTTGTT+GGG - chr3_3:6145568-6145587 None:intergenic 30.0%
!!! ATTGTTTTGGGAGATTTGAT+TGG - chr3_3:6145775-6145794 None:intergenic 30.0%
! CAAATTGCACTCATTGTTTT+GGG - chr3_3:6145787-6145806 None:intergenic 30.0%
GAAAAGGTAACATGATGATA+GGG - chr3_3:6145855-6145874 None:intergenic 30.0%
AGAAAAGGTAACATGATGAT+AGG - chr3_3:6145856-6145875 None:intergenic 30.0%
AGCAATTTGACGAAAAGAAA+AGG - chr3_3:6145871-6145890 None:intergenic 30.0%
AGAAAAGTAGTACTAATCAC+TGG + chr3_3:6145931-6145950 Msa0439780:CDS 30.0%
GAAAAGTAGTACTAATCACT+GGG + chr3_3:6145932-6145951 Msa0439780:CDS 30.0%
AAAAGTAGTACTAATCACTG+GGG + chr3_3:6145933-6145952 Msa0439780:CDS 30.0%
! TATATCCACATTTTTCTCGT+AGG - chr3_3:6146027-6146046 None:intergenic 30.0%
TAAAAATCAGTCGCAATAGT+TGG + chr3_3:6146094-6146113 Msa0439780:intron 30.0%
AACTTCTTATCAACTGAACA+AGG - chr3_3:6146228-6146247 None:intergenic 30.0%
ATCTCCATCAATTCTCTATA+CGG + chr3_3:6146310-6146329 Msa0439780:intron 30.0%
!!! ATGTCCCCTAAAGTTTTATT+TGG - chr3_3:6146475-6146494 None:intergenic 30.0%
!!! CTAGTTCCTTTTTTAGAGAA+AGG - chr3_3:6146529-6146548 None:intergenic 30.0%
GATGAAACAATCAAACACTT+TGG + chr3_3:6146707-6146726 Msa0439780:CDS 30.0%
AGAAAGATTCAAGAATGACA+TGG + chr3_3:6147050-6147069 Msa0439780:intron 30.0%
AGAAAGATTCAAGAATGACA+TGG - chr3_3:6147050-6147069 None:intergenic 30.0%
! TCGGTTGGAAAACATTTTTA+AGG + chr3_3:6147741-6147760 Msa0439780:intron 30.0%
CTGCTTAGATATTAACTTCA+TGG + chr3_3:6147864-6147883 Msa0439780:intron 30.0%
! CACTTTTAGTGTTTATTCAC+AGG + chr3_3:6147956-6147975 Msa0439780:intron 30.0%
ATTCACAGGATACAAATTTC+TGG + chr3_3:6147970-6147989 Msa0439780:intron 30.0%
TTCACAGGATACAAATTTCT+GGG + chr3_3:6147971-6147990 Msa0439780:intron 30.0%
! CAAAACAAATATGGCATTGA+AGG + chr3_3:6148345-6148364 Msa0439780:CDS 30.0%
GTTGAGGTTTAAATTAAAGG+AGG - chr3_3:6148417-6148436 None:intergenic 30.0%
ATAAGACAAAATTACTCTCG+TGG + chr3_3:6148745-6148764 Msa0439780:exon 30.0%
!! AGATGATTGGTCTAATATGA+TGG + chr3_3:6148913-6148932 Msa0439780:three_prime_UTR 30.0%
!! GATGATTGGTCTAATATGAT+GGG + chr3_3:6148914-6148933 Msa0439780:three_prime_UTR 30.0%
!! ATGATTGGTCTAATATGATG+GGG + chr3_3:6148915-6148934 Msa0439780:three_prime_UTR 30.0%
AAAAGAATGGAGGTTTGATG+TGG + chr3_3:6141594-6141613 Msa0439780:intron 35.0%
!! ATTTTTCCGTATCGACGTAT+CGG - chr3_3:6141690-6141709 None:intergenic 35.0%
TCTCCATTTGTTCACCAATA+TGG - chr3_3:6142346-6142365 None:intergenic 35.0%
!!! TCCCTCATTTTTTTCACCAT+TGG + chr3_3:6142473-6142492 Msa0439780:intron 35.0%
GCCAATGGTGAAAAAAATGA+GGG - chr3_3:6142477-6142496 None:intergenic 35.0%
AGCCAATGGTGAAAAAAATG+AGG - chr3_3:6142478-6142497 None:intergenic 35.0%
GAATGATCTAGCAAATAAGG+TGG + chr3_3:6142649-6142668 Msa0439780:intron 35.0%
GAAGTAGCTTTCTAAATAGG+AGG - chr3_3:6142787-6142806 None:intergenic 35.0%
CACACCAAATTTAAGTGAGT+TGG + chr3_3:6143654-6143673 Msa0439780:intron 35.0%
GACTCCAACTCACTTAAATT+TGG - chr3_3:6143661-6143680 None:intergenic 35.0%
! ATTGATAGTAGTTGGATGGT+TGG - chr3_3:6143808-6143827 None:intergenic 35.0%
CCAATAATTATTCCACCAAC+TGG - chr3_3:6144040-6144059 None:intergenic 35.0%
!! CCAGTTGGTGGAATAATTAT+TGG + chr3_3:6144037-6144056 Msa0439780:intron 35.0%
! TTTTTGTTGATCAACTTCGG+TGG + chr3_3:6144209-6144228 Msa0439780:intron 35.0%
TAACTACGAAGTTGAAGTGA+CGG + chr3_3:6144311-6144330 Msa0439780:intron 35.0%
CGGAGTTTAACGAAAAAGTT+AGG + chr3_3:6144331-6144350 Msa0439780:intron 35.0%
GTTTAACGAAAAAGTTAGGG+TGG + chr3_3:6144335-6144354 Msa0439780:intron 35.0%
TACACCACGTTGCAAAAATT+TGG + chr3_3:6144593-6144612 Msa0439780:intron 35.0%
! TGATCCAAATTTTTGCAACG+TGG - chr3_3:6144600-6144619 None:intergenic 35.0%
!! TAAGTTAAGTTGATCAGTGG+CGG - chr3_3:6144737-6144756 None:intergenic 35.0%
AATAATATATGCAAGGTCCG+TGG + chr3_3:6145042-6145061 Msa0439780:intron 35.0%
!!! TTTTTGTTTTTGTGGTGAGC+GGG - chr3_3:6145075-6145094 None:intergenic 35.0%
! TGGTGGATAGGAATTTCTTA+AGG - chr3_3:6145413-6145432 None:intergenic 35.0%
!! TGAAAATATTGGTGGTGGAT+AGG - chr3_3:6145425-6145444 None:intergenic 35.0%
TGTGATGAAAATATTGGTGG+TGG - chr3_3:6145430-6145449 None:intergenic 35.0%
! ACCAATATTTTCATCACACG+CGG + chr3_3:6145432-6145451 Msa0439780:intron 35.0%
!! ATCTTACTGGCTGTTTTCAA+TGG - chr3_3:6145459-6145478 None:intergenic 35.0%
TGAAAACAGCCAGTAAGATA+AGG + chr3_3:6145460-6145479 Msa0439780:intron 35.0%
AATCAGTGTCCTTATCTTAC+TGG - chr3_3:6145472-6145491 None:intergenic 35.0%
CCCAACAAAATTGGCAAAAT+TGG + chr3_3:6145565-6145584 Msa0439780:intron 35.0%
! GCCAATTTTGCCAATTTTGT+TGG - chr3_3:6145569-6145588 None:intergenic 35.0%
AGTTATTGATAGACATGTCC+TGG + chr3_3:6145605-6145624 Msa0439780:intron 35.0%
ATTGTAATGTGAGACATGTC+TGG - chr3_3:6145646-6145665 None:intergenic 35.0%
! GCAAATTGCACTCATTGTTT+TGG - chr3_3:6145788-6145807 None:intergenic 35.0%
TCATACCTACGAGAAAAATG+TGG + chr3_3:6146019-6146038 Msa0439780:intron 35.0%
TCTTATCAACTGAACAAGGT+CGG - chr3_3:6146224-6146243 None:intergenic 35.0%
CAAACCGTATAGAGAATTGA+TGG - chr3_3:6146317-6146336 None:intergenic 35.0%
AAAAGAGAATCTTGTAGCAG+TGG + chr3_3:6146598-6146617 Msa0439780:CDS 35.0%
ACCAATGATAGTAACATCAG+GGG - chr3_3:6146648-6146667 None:intergenic 35.0%
CACCAATGATAGTAACATCA+GGG - chr3_3:6146649-6146668 None:intergenic 35.0%
AAATTGTGTGTTTCATGCAG+TGG + chr3_3:6146816-6146835 Msa0439780:intron 35.0%
GATCATCTGGTAAATAATGC+AGG + chr3_3:6146838-6146857 Msa0439780:CDS 35.0%
GTAAATAATGCAGGAGTTTC+TGG + chr3_3:6146847-6146866 Msa0439780:CDS 35.0%
!! TGGCATTCCAATTTTGATAG+AGG + chr3_3:6146867-6146886 Msa0439780:CDS 35.0%
! TCTGCTTCAATTAATGGACA+TGG + chr3_3:6146938-6146957 Msa0439780:intron 35.0%
CAATAAAATCTCAGCATGAC+CGG + chr3_3:6147127-6147146 Msa0439780:intron 35.0%
! TACCATACACATTCTAGAGA+TGG + chr3_3:6147296-6147315 Msa0439780:intron 35.0%
!! AACCATCTCTAGAATGTGTA+TGG - chr3_3:6147301-6147320 None:intergenic 35.0%
AAGTTAGCAAGCTCATCTTT+GGG + chr3_3:6147698-6147717 Msa0439780:intron 35.0%
TAACAAAACCTATGATCGGT+TGG + chr3_3:6147726-6147745 Msa0439780:intron 35.0%
! AATGTTTTCCAACCGATCAT+AGG - chr3_3:6147737-6147756 None:intergenic 35.0%
! AATACGTAGCATTTTTCCCT+TGG + chr3_3:6147819-6147838 Msa0439780:intron 35.0%
TCACAGGATACAAATTTCTG+GGG + chr3_3:6147972-6147991 Msa0439780:intron 35.0%
!!! CTTTGCTGTTTTTGAGATGT+GGG - chr3_3:6148025-6148044 None:intergenic 35.0%
AGAGACTTAATCTTGGAAGT+GGG - chr3_3:6148085-6148104 None:intergenic 35.0%
TAGAGACTTAATCTTGGAAG+TGG - chr3_3:6148086-6148105 None:intergenic 35.0%
ATTATGGTATCAGGCTAGTA+AGG + chr3_3:6148240-6148259 Msa0439780:intron 35.0%
! GAGACTCTAAGAATTGAACT+TGG + chr3_3:6148283-6148302 Msa0439780:CDS 35.0%
! CTCTAAGAATTGAACTTGGT+TGG + chr3_3:6148287-6148306 Msa0439780:CDS 35.0%
! AGGAGGTGTAATATTATGCT+TGG - chr3_3:6148400-6148419 None:intergenic 35.0%
!! CGCACTTTTTACTATGTCTT+TGG - chr3_3:6148543-6148562 None:intergenic 35.0%
! CAAAGTGATGTTTCCTTTTC+AGG + chr3_3:6148601-6148620 Msa0439780:CDS 35.0%
CAAAAGCCTTCTTGTAAGAA+GGG + chr3_3:6148677-6148696 Msa0439780:CDS 35.0%
ATTATTCTGTCTTAAGCACG+TGG - chr3_3:6148727-6148746 None:intergenic 35.0%
TTTATGTGTACCCTTAGACT+AGG + chr3_3:6148864-6148883 Msa0439780:three_prime_UTR 35.0%
TTATGTGTACCCTTAGACTA+GGG + chr3_3:6148865-6148884 Msa0439780:three_prime_UTR 35.0%
CAATATAGACCCTAGTCTAA+GGG - chr3_3:6148877-6148896 None:intergenic 35.0%
ACAATATAGACCCTAGTCTA+AGG - chr3_3:6148878-6148897 None:intergenic 35.0%
GCCTGTTTATTAAAAAGGCT+AGG + chr3_3:6149010-6149029 Msa0439780:three_prime_UTR 35.0%
!! GCCTAGCCTTTTTAATAAAC+AGG - chr3_3:6149014-6149033 None:intergenic 35.0%
AGTGTGAGAGTGGAAAAGAA+TGG + chr3_3:6141581-6141600 Msa0439780:intron 40.0%
AGGTGGAAGGATGAAGAAAT+AGG + chr3_3:6141617-6141636 Msa0439780:intron 40.0%
ATGTTCTACGAGCCTATGAT+TGG - chr3_3:6141832-6141851 None:intergenic 40.0%
! AGCACCAACAATGTTCCTTT+TGG - chr3_3:6141955-6141974 None:intergenic 40.0%
AGAAATATCGGGGCAGATAT+CGG + chr3_3:6142064-6142083 Msa0439780:intron 40.0%
GATACTCTCCTGATACGTAT+CGG + chr3_3:6142169-6142188 Msa0439780:intron 40.0%
ATACTCTCCTGATACGTATC+GGG + chr3_3:6142170-6142189 Msa0439780:intron 40.0%
GAAGCCCCAATACTTCAAAA+TGG - chr3_3:6142247-6142266 None:intergenic 40.0%
!!! TTTTTTTCACCATTGGCTCG+AGG + chr3_3:6142480-6142499 Msa0439780:intron 40.0%
!!! TTTTTTCACCATTGGCTCGA+GGG + chr3_3:6142481-6142500 Msa0439780:intron 40.0%
TAGATCATTCGATGGTGACA+TGG - chr3_3:6142639-6142658 None:intergenic 40.0%
! TATTTCCTATTGATGGCACG+TGG + chr3_3:6142709-6142728 Msa0439780:intron 40.0%
!! AATTTTACGGGTTGTTGCCA+AGG + chr3_3:6142744-6142763 Msa0439780:intron 40.0%
! GATCACTATACTTTTCGCCT+TGG - chr3_3:6142764-6142783 None:intergenic 40.0%
AACCACCATGAACATCAACA+GGG + chr3_3:6142971-6142990 Msa0439780:intron 40.0%
TTTCTCCCTGTTGATGTTCA+TGG - chr3_3:6142979-6142998 None:intergenic 40.0%
TTGTGCTTGCTTTGATCGTT+TGG - chr3_3:6143010-6143029 None:intergenic 40.0%
AAGCACAAGTGAGAGCTAAT+TGG + chr3_3:6143022-6143041 Msa0439780:intron 40.0%
AGCACAAGTGAGAGCTAATT+GGG + chr3_3:6143023-6143042 Msa0439780:intron 40.0%
TAATTGGGAGGGTGATATCT+TGG + chr3_3:6143038-6143057 Msa0439780:intron 40.0%
AGATCCAAAATCACCTACAG+AGG + chr3_3:6143713-6143732 Msa0439780:intron 40.0%
! AGTACCTCTGTAGGTGATTT+TGG - chr3_3:6143720-6143739 None:intergenic 40.0%
ACATCCAGATCACAAACAAG+AGG + chr3_3:6143744-6143763 Msa0439780:intron 40.0%
CAACTGGAGTAATTTCTCAC+CGG - chr3_3:6144024-6144043 None:intergenic 40.0%
TGAGAAATTACTCCAGTTGG+TGG + chr3_3:6144025-6144044 Msa0439780:intron 40.0%
GCGGAGCTAGAAAAAAAGTT+CGG + chr3_3:6144231-6144250 Msa0439780:intron 40.0%
CGGAGCTAGAAAAAAAGTTC+GGG + chr3_3:6144232-6144251 Msa0439780:intron 40.0%
AGCTAGAAAAAAAGTTCGGG+TGG + chr3_3:6144235-6144254 Msa0439780:intron 40.0%
! ATTTTTGCAACGTGGTGTAG+TGG - chr3_3:6144592-6144611 None:intergenic 40.0%
!!! TTTTGTTTTTGTGGTGAGCG+GGG - chr3_3:6145074-6145093 None:intergenic 40.0%
AAATTGCCACGGTTGAACTT+TGG + chr3_3:6145121-6145140 Msa0439780:intron 40.0%
!! CTTGGCTACTTGCTTTTGTA+AGG - chr3_3:6145368-6145387 None:intergenic 40.0%
CTTACAAAAGCAAGTAGCCA+AGG + chr3_3:6145366-6145385 Msa0439780:intron 40.0%
AATTTCTTAAGGTTGAGCCG+TGG - chr3_3:6145402-6145421 None:intergenic 40.0%
GCGTGTGATGAAAATATTGG+TGG - chr3_3:6145433-6145452 None:intergenic 40.0%
ACCGCGTGTGATGAAAATAT+TGG - chr3_3:6145436-6145455 None:intergenic 40.0%
ATCGAAATCAGTGACAATGG+GGG - chr3_3:6145832-6145851 None:intergenic 40.0%
GATCGAAATCAGTGACAATG+GGG - chr3_3:6145833-6145852 None:intergenic 40.0%
GGATCGAAATCAGTGACAAT+GGG - chr3_3:6145834-6145853 None:intergenic 40.0%
GCATATGATGCCTTACCTTT+GGG - chr3_3:6146137-6146156 None:intergenic 40.0%
TGCATATGATGCCTTACCTT+TGG - chr3_3:6146138-6146157 None:intergenic 40.0%
GGCATCATATGCACACAAAA+AGG + chr3_3:6146145-6146164 Msa0439780:intron 40.0%
GCTTATGAGTATGCTAAGAG+AGG + chr3_3:6146548-6146567 Msa0439780:CDS 40.0%
TCCCCTGATGTTACTATCAT+TGG + chr3_3:6146644-6146663 Msa0439780:CDS 40.0%
GCACCAATGATAGTAACATC+AGG - chr3_3:6146650-6146669 None:intergenic 40.0%
! CGGTCATGCTGAGATTTTAT+TGG - chr3_3:6147129-6147148 None:intergenic 40.0%
!! CTTTAATTTGGCTCCGCATT+GGG - chr3_3:6147654-6147673 None:intergenic 40.0%
!! ACTTTAATTTGGCTCCGCAT+TGG - chr3_3:6147655-6147674 None:intergenic 40.0%
GCGGAGCCAAATTAAAGTTT+AGG + chr3_3:6147657-6147676 Msa0439780:intron 40.0%
CAAGTTAGCAAGCTCATCTT+TGG + chr3_3:6147697-6147716 Msa0439780:intron 40.0%
!!! CCTTTGCTGTTTTTGAGATG+TGG - chr3_3:6148026-6148045 None:intergenic 40.0%
CCACATCTCAAAAACAGCAA+AGG + chr3_3:6148023-6148042 Msa0439780:CDS 40.0%
ATCTCAAAAACAGCAAAGGC+AGG + chr3_3:6148027-6148046 Msa0439780:CDS 40.0%
ATTGAACTTGGTTGGACCAT+TGG + chr3_3:6148295-6148314 Msa0439780:CDS 40.0%
TGTGACGATTGTAATGCCAA+TGG - chr3_3:6148314-6148333 None:intergenic 40.0%
! ATTGAAGGCATATGAAGACG+AGG + chr3_3:6148360-6148379 Msa0439780:CDS 40.0%
!! AGTGTAAACTGCATTGGTTG+AGG - chr3_3:6148433-6148452 None:intergenic 40.0%
CACAGTAGTGTAAACTGCAT+TGG - chr3_3:6148439-6148458 None:intergenic 40.0%
TAGTCTGCAATGCATTCCAT+TGG + chr3_3:6148499-6148518 Msa0439780:CDS 40.0%
AGTCTGCAATGCATTCCATT+GGG + chr3_3:6148500-6148519 Msa0439780:CDS 40.0%
! CATTCATTTGCTGATCCCAA+TGG - chr3_3:6148518-6148537 None:intergenic 40.0%
! ACATAGTAAAAAGTGCGTGC+AGG + chr3_3:6148546-6148565 Msa0439780:CDS 40.0%
! CATAGTAAAAAGTGCGTGCA+GGG + chr3_3:6148547-6148566 Msa0439780:CDS 40.0%
! ATAGTAAAAAGTGCGTGCAG+GGG + chr3_3:6148548-6148567 Msa0439780:CDS 40.0%
TGTATGTGACAAACCCTTCA+TGG + chr3_3:6148576-6148595 Msa0439780:CDS 40.0%
ACATCACTTTGAGCCATGAA+GGG - chr3_3:6148592-6148611 None:intergenic 40.0%
AACATCACTTTGAGCCATGA+AGG - chr3_3:6148593-6148612 None:intergenic 40.0%
! TCAGGATAAAGCACCTGAAA+AGG - chr3_3:6148617-6148636 None:intergenic 40.0%
! TTTATCCTGAGTTAGTGGAC+TGG + chr3_3:6148627-6148646 Msa0439780:CDS 40.0%
!! TTATCCTGAGTTAGTGGACT+GGG + chr3_3:6148628-6148647 Msa0439780:CDS 40.0%
GCAAAAGCCTTCTTGTAAGA+AGG + chr3_3:6148676-6148695 Msa0439780:CDS 40.0%
! TGGTCTAATATGATGGGGTT+AGG + chr3_3:6148920-6148939 Msa0439780:three_prime_UTR 40.0%
! GGTCTAATATGATGGGGTTA+GGG + chr3_3:6148921-6148940 Msa0439780:three_prime_UTR 40.0%
! TAATATGATGGGGTTAGGGT+TGG + chr3_3:6148925-6148944 Msa0439780:three_prime_UTR 40.0%
! AATATGATGGGGTTAGGGTT+GGG + chr3_3:6148926-6148945 Msa0439780:three_prime_UTR 40.0%
GCCTGGCCTGTTTATTAAAA+AGG + chr3_3:6149005-6149024 Msa0439780:three_prime_UTR 40.0%
! GCCTTTTTAATAAACAGGCC+AGG - chr3_3:6149009-6149028 None:intergenic 40.0%
! TTAAGAAGGGAGTGTGAGAG+TGG + chr3_3:6141571-6141590 Msa0439780:intron 45.0%
GTGAGAGTGGAAAAGAATGG+AGG + chr3_3:6141584-6141603 Msa0439780:intron 45.0%
AGAATGGAGGTTTGATGTGG+AGG + chr3_3:6141597-6141616 Msa0439780:intron 45.0%
AAATAGGAGCTTGTGAAGCC+CGG + chr3_3:6141633-6141652 Msa0439780:intron 45.0%
TCCGTATCGTATCTCGTATC+CGG - chr3_3:6141655-6141674 None:intergenic 45.0%
GATACATCCCGATACGTATC+AGG - chr3_3:6142180-6142199 None:intergenic 45.0%
GATACGTATCGGGATGTATC+AGG + chr3_3:6142180-6142199 Msa0439780:intron 45.0%
TATCGGTGCAGGATACACAA+GGG + chr3_3:6142207-6142226 Msa0439780:intron 45.0%
GTATTGGGGCTTCACATAAC+AGG + chr3_3:6142254-6142273 Msa0439780:intron 45.0%
GCTTCACATAACAGGAGGAT+TGG + chr3_3:6142262-6142281 Msa0439780:intron 45.0%
TCACATAACAGGAGGATTGG+TGG + chr3_3:6142265-6142284 Msa0439780:intron 45.0%
!!! TTTTTCACCATTGGCTCGAG+GGG + chr3_3:6142482-6142501 Msa0439780:intron 45.0%
!! AACCTTTGAGACTAGAGACC+TGG + chr3_3:6142525-6142544 Msa0439780:intron 45.0%
ATCCAGGTCTCTAGTCTCAA+AGG - chr3_3:6142530-6142549 None:intergenic 45.0%
!! GACGGTTTTGATGAGCTTGT+AGG + chr3_3:6142592-6142611 Msa0439780:intron 45.0%
CTTGTAGGCAACGAGTCTTT+CGG + chr3_3:6142607-6142626 Msa0439780:intron 45.0%
TCATTCGATGGTGACATGGT+GGG - chr3_3:6142635-6142654 None:intergenic 45.0%
ATCATTCGATGGTGACATGG+TGG - chr3_3:6142636-6142655 None:intergenic 45.0%
TAGGCGGGTAGGGAATATAA+TGG - chr3_3:6142809-6142828 None:intergenic 45.0%
ACATCGTTGAAGTTGCTAGG+CGG - chr3_3:6142825-6142844 None:intergenic 45.0%
AGCACATCGTTGAAGTTGCT+AGG - chr3_3:6142828-6142847 None:intergenic 45.0%
CAACCACCATGAACATCAAC+AGG + chr3_3:6142970-6142989 Msa0439780:intron 45.0%
ACAAGTGAGAGCTAATTGGG+AGG + chr3_3:6143026-6143045 Msa0439780:intron 45.0%
CAAGTGAGAGCTAATTGGGA+GGG + chr3_3:6143027-6143046 Msa0439780:intron 45.0%
GATGTAGCAAGTACCTCTGT+AGG - chr3_3:6143729-6143748 None:intergenic 45.0%
! CGTACCTCTTGTTTGTGATC+TGG - chr3_3:6143751-6143770 None:intergenic 45.0%
GATAAAATCCACTCGCTAGG+TGG - chr3_3:6144002-6144021 None:intergenic 45.0%
!! CCTAGCGAGTGGATTTTATC+CGG + chr3_3:6144002-6144021 Msa0439780:intron 45.0%
CGGTGAGAAATTACTCCAGT+TGG + chr3_3:6144022-6144041 Msa0439780:intron 45.0%
TTGTTGATCAACTTCGGTGG+CGG + chr3_3:6144212-6144231 Msa0439780:intron 45.0%
! AAATTTTTCCAGGTGGGTCG+TGG + chr3_3:6144688-6144707 Msa0439780:intron 45.0%
AGTTAGCCAAAGTTCAACCG+TGG - chr3_3:6145130-6145149 None:intergenic 45.0%
CCAAAATGGTCGAAAAGTCG+AGG - chr3_3:6145161-6145180 None:intergenic 45.0%
! CCTCGACTTTTCGACCATTT+TGG + chr3_3:6145158-6145177 Msa0439780:intron 45.0%
! CCAATTTTGTTGGGGGTTGT+TGG - chr3_3:6145559-6145578 None:intergenic 45.0%
CCAACAACCCCCAACAAAAT+TGG + chr3_3:6145556-6145575 Msa0439780:intron 45.0%
GGGATCGAAATCAGTGACAA+TGG - chr3_3:6145835-6145854 None:intergenic 45.0%
! CAATAGTTGGTTCCGTTGCA+GGG + chr3_3:6146107-6146126 Msa0439780:intron 45.0%
ATGATGCCTTACCTTTGGGT+CGG - chr3_3:6146133-6146152 None:intergenic 45.0%
AGTATGCTAAGAGAGGAGCA+AGG + chr3_3:6146555-6146574 Msa0439780:CDS 45.0%
AGAGAATCTTGTAGCAGTGG+CGG + chr3_3:6146601-6146620 Msa0439780:CDS 45.0%
AGTAACATCAGGGGAACCAA+GGG - chr3_3:6146639-6146658 None:intergenic 45.0%
TAGTAACATCAGGGGAACCA+AGG - chr3_3:6146640-6146659 None:intergenic 45.0%
CATTGGTGCAGATGTTTCCA+AGG + chr3_3:6146661-6146680 Msa0439780:CDS 45.0%
CCAAGGTTGAAGACAGTAAG+CGG + chr3_3:6146678-6146697 Msa0439780:CDS 45.0%
TGGACGATGTATGTGACTGT+TGG + chr3_3:6146727-6146746 Msa0439780:intron 45.0%
GTTTCATGCAGTGGATCATC+TGG + chr3_3:6146825-6146844 Msa0439780:intron 45.0%
TCAGCATGACCGGAAATCAT+GGG + chr3_3:6147137-6147156 Msa0439780:intron 45.0%
! AATTTCTGGGGAGCAGTTCA+TGG + chr3_3:6147984-6148003 Msa0439780:CDS 45.0%
CAGGATCATAGTGGTTGCTT+CGG + chr3_3:6148046-6148065 Msa0439780:CDS 45.0%
AGGATCATAGTGGTTGCTTC+GGG + chr3_3:6148047-6148066 Msa0439780:CDS 45.0%
AAGGCATATGAAGACGAGGT+CGG + chr3_3:6148364-6148383 Msa0439780:intron 45.0%
GGTGCTTTATCCTGAGTTAG+TGG + chr3_3:6148622-6148641 Msa0439780:CDS 45.0%
AACGACACATCTTTGGGCTT+TGG + chr3_3:6148654-6148673 Msa0439780:CDS 45.0%
AGATCGCCCTTCTTACAAGA+AGG - chr3_3:6148686-6148705 None:intergenic 45.0%
TTTAATAAACAGGCCAGGCC+AGG - chr3_3:6149004-6149023 None:intergenic 45.0%
!! TAAAAAAAAAATTTAATCTT+TGG + chr3_3:6142147-6142166 Msa0439780:intron 5.0%
!!! TTTTTTTTTTTTAAAATAGA+AGG - chr3_3:6142310-6142329 None:intergenic 5.0%
!!! TATATTATAATTAATTTTAG+TGG - chr3_3:6144262-6144281 None:intergenic 5.0%
!! AATTTAAATTATTCAATTAT+AGG - chr3_3:6144558-6144577 None:intergenic 5.0%
ATGGAGGTTTGATGTGGAGG+TGG + chr3_3:6141600-6141619 Msa0439780:intron 50.0%
AGGTTTGATGTGGAGGTGGA+AGG + chr3_3:6141604-6141623 Msa0439780:intron 50.0%
CCGTATCGTATCTCGTATCC+GGG - chr3_3:6141654-6141673 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG + chr3_3:6141651-6141670 Msa0439780:intron 50.0%
! ACTGCACCGATACGTCGATA+CGG + chr3_3:6141681-6141700 Msa0439780:intron 50.0%
!! GCACTGATGGTGCTCGTTTT+GGG - chr3_3:6141922-6141941 None:intergenic 50.0%
!!! AGCACTGATGGTGCTCGTTT+TGG - chr3_3:6141923-6141942 None:intergenic 50.0%
GGGATGTATCAGGCAGGTAT+CGG + chr3_3:6142190-6142209 Msa0439780:intron 50.0%
! GTATCGGTGCAGGATACACA+AGG + chr3_3:6142206-6142225 Msa0439780:intron 50.0%
TTGGGGCTTCACATAACAGG+AGG + chr3_3:6142257-6142276 Msa0439780:intron 50.0%
! TAACAGGAGGATTGGTGGAG+TGG + chr3_3:6142270-6142289 Msa0439780:intron 50.0%
! TTTTGAACCCCTCGAGCCAA+TGG - chr3_3:6142492-6142511 None:intergenic 50.0%
CAAGCTCATCAAAACCGTCG+CGG - chr3_3:6142591-6142610 None:intergenic 50.0%
CATTCGATGGTGACATGGTG+GGG - chr3_3:6142634-6142653 None:intergenic 50.0%
TTGAAGTTGCTAGGCGGGTA+GGG - chr3_3:6142819-6142838 None:intergenic 50.0%
CATCGTTGAAGTTGCTAGGC+GGG - chr3_3:6142824-6142843 None:intergenic 50.0%
CTCCCTGTTGATGTTCATGG+TGG - chr3_3:6142976-6142995 None:intergenic 50.0%
CCGGATAAAATCCACTCGCT+AGG - chr3_3:6144005-6144024 None:intergenic 50.0%
CCAACTGAGTTAAGCTCACG+AGG - chr3_3:6144995-6145014 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG + chr3_3:6144992-6145011 Msa0439780:intron 50.0%
CAAGTAGCCAAGGACAACCA+TGG + chr3_3:6145376-6145395 Msa0439780:intron 50.0%
! TTTGTTGGGGGTTGTTGGCT+GGG - chr3_3:6145554-6145573 None:intergenic 50.0%
! TTTTGTTGGGGGTTGTTGGC+TGG - chr3_3:6145555-6145574 None:intergenic 50.0%
TGGCAGTGACTGTTAACTCC+AGG - chr3_3:6145626-6145645 None:intergenic 50.0%
! CTTGGTGCACACAGAAAGCA+TGG + chr3_3:6145906-6145925 Msa0439780:intron 50.0%
! GCAATAGTTGGTTCCGTTGC+AGG + chr3_3:6146106-6146125 Msa0439780:intron 50.0%
!! TCTTGTAGCAGTGGCGGATA+TGG + chr3_3:6146607-6146626 Msa0439780:CDS 50.0%
CCGCTTACTGTCTTCAACCT+TGG - chr3_3:6146681-6146700 None:intergenic 50.0%
CTCAGCATGACCGGAAATCA+TGG + chr3_3:6147136-6147155 Msa0439780:intron 50.0%
CAGCATGACCGGAAATCATG+GGG + chr3_3:6147138-6147157 Msa0439780:intron 50.0%
! GTGGCGGGACTGAAATCTAA+GGG + chr3_3:6147179-6147198 Msa0439780:intron 50.0%
CAGCAAAGGCAGGATCATAG+TGG + chr3_3:6148037-6148056 Msa0439780:CDS 50.0%
!! ATAGTGGTTGCTTCGGGTTG+TGG + chr3_3:6148053-6148072 Msa0439780:CDS 50.0%
GGCATTACAATCGTCACACC+TGG + chr3_3:6148316-6148335 Msa0439780:CDS 50.0%
TGAAGACGAGGTCGGTCAAT+TGG + chr3_3:6148372-6148391 Msa0439780:intron 50.0%
TGGGCAGAACGACACATCTT+TGG + chr3_3:6148647-6148666 Msa0439780:CDS 50.0%
GGGCAGAACGACACATCTTT+GGG + chr3_3:6148648-6148667 Msa0439780:CDS 50.0%
ATGGGGTTAGGGTTGGGAAT+AGG + chr3_3:6148932-6148951 Msa0439780:three_prime_UTR 50.0%
ACTTAAACAGGCCAGACCGT+AGG - chr3_3:6148977-6148996 None:intergenic 50.0%
CGTATCGGGATGTATCAGGC+AGG + chr3_3:6142184-6142203 Msa0439780:intron 55.0%
!! TATCAGGCAGGTATCGGTGC+AGG + chr3_3:6142196-6142215 Msa0439780:intron 55.0%
!! TCGCGGTCTGCAAGTTTTGG+GGG - chr3_3:6142574-6142593 None:intergenic 55.0%
! GTCGCGGTCTGCAAGTTTTG+GGG - chr3_3:6142575-6142594 None:intergenic 55.0%
! CGTCGCGGTCTGCAAGTTTT+GGG - chr3_3:6142576-6142595 None:intergenic 55.0%
CCAAAACTTGCAGACCGCGA+CGG + chr3_3:6142574-6142593 Msa0439780:intron 55.0%
GCGTTCCACGTGCCATCAAT+AGG - chr3_3:6142717-6142736 None:intergenic 55.0%
GTTGAAGTTGCTAGGCGGGT+AGG - chr3_3:6142820-6142839 None:intergenic 55.0%
GAGAGAATCCACCTAGCGAG+TGG + chr3_3:6143991-6144010 Msa0439780:intron 55.0%
! CAGTGCACGAGAAGCATGGT+GGG - chr3_3:6144897-6144916 None:intergenic 55.0%
! ACAGTGCACGAGAAGCATGG+TGG - chr3_3:6144898-6144917 None:intergenic 55.0%
GAGACAGTGCACGAGAAGCA+TGG - chr3_3:6144901-6144920 None:intergenic 55.0%
TTAAGGTTGAGCCGTGGCCA+TGG - chr3_3:6145396-6145415 None:intergenic 55.0%
! TTGTTGGGGGTTGTTGGCTG+GGG - chr3_3:6145553-6145572 None:intergenic 55.0%
GAGTACCTCGCCAATTCCTG+AGG - chr3_3:6145962-6145981 None:intergenic 55.0%
GCGGATATGGCAACATCCCT+TGG + chr3_3:6146620-6146639 Msa0439780:CDS 55.0%
CATGACCGGAAATCATGGGG+TGG + chr3_3:6147141-6147160 Msa0439780:intron 55.0%
ATGGGGTGGTGCGGAAATCA+TGG + chr3_3:6147155-6147174 Msa0439780:intron 55.0%
TGGGGTGGTGCGGAAATCAT+GGG + chr3_3:6147156-6147175 Msa0439780:intron 55.0%
!! GGTGGCGGGACTGAAATCTA+AGG + chr3_3:6147178-6147197 Msa0439780:intron 55.0%
!! TGGTTGCTTCGGGTTGTGGA+TGG + chr3_3:6148057-6148076 Msa0439780:CDS 55.0%
TCTGCCCAGTCCACTAACTC+AGG - chr3_3:6148635-6148654 None:intergenic 55.0%
CGGTCTGGCCTGTTTAAGTC+TGG + chr3_3:6148978-6148997 Msa0439780:three_prime_UTR 55.0%
TGGCCTGTTTAAGTCTGGCC+TGG + chr3_3:6148983-6149002 Msa0439780:three_prime_UTR 55.0%
AGGCCAGGCCAGACTTAAAC+AGG - chr3_3:6148989-6149008 None:intergenic 55.0%
TGTTTAAGTCTGGCCTGGCC+TGG + chr3_3:6148988-6149007 Msa0439780:three_prime_UTR 55.0%
!!! CGGTCTGCAAGTTTTGGGGG+TGG - chr3_3:6142571-6142590 None:intergenic 60.0%
! CCGTCGCGGTCTGCAAGTTT+TGG - chr3_3:6142577-6142596 None:intergenic 60.0%
! ATCAGTGGCGGAGCCCTTCA+CGG - chr3_3:6144725-6144744 None:intergenic 60.0%
GCCAAGGACAACCATGGCCA+CGG + chr3_3:6145382-6145401 Msa0439780:intron 60.0%
CTAATCACTGGGGCAGCCTC+AGG + chr3_3:6145943-6145962 Msa0439780:CDS 60.0%
ACTGGGGCAGCCTCAGGAAT+TGG + chr3_3:6145949-6145968 Msa0439780:CDS 60.0%
CCGCACCACCCCATGATTTC+CGG - chr3_3:6147149-6147168 None:intergenic 60.0%
CCGGAAATCATGGGGTGGTG+CGG + chr3_3:6147146-6147165 Msa0439780:intron 60.0%
GGGGTGGTGCGGAAATCATG+GGG + chr3_3:6147157-6147176 Msa0439780:intron 60.0%
GTGGTGCGGAAATCATGGGG+TGG + chr3_3:6147160-6147179 Msa0439780:intron 60.0%
GTGCGGAAATCATGGGGTGG+CGG + chr3_3:6147163-6147182 Msa0439780:intron 60.0%
TGCGGAAATCATGGGGTGGC+GGG + chr3_3:6147164-6147183 Msa0439780:intron 60.0%
GGGTTGGGAATAGGCCATGC+CGG + chr3_3:6148941-6148960 Msa0439780:three_prime_UTR 60.0%
AATAGGCCATGCCGGCCTAC+AGG + chr3_3:6148949-6148968 Msa0439780:three_prime_UTR 60.0%
ATAGGCCATGCCGGCCTACA+GGG + chr3_3:6148950-6148969 Msa0439780:three_prime_UTR 60.0%
AGACCTGGATCCGCCGATGC+AGG + chr3_3:6142540-6142559 Msa0439780:intron 65.0%
! ATGCCTGCATCGGCGGATCC+AGG - chr3_3:6142546-6142565 None:intergenic 65.0%
GGTGGACATGCCTGCATCGG+CGG - chr3_3:6142553-6142572 None:intergenic 65.0%
GGGGGTGGACATGCCTGCAT+CGG - chr3_3:6142556-6142575 None:intergenic 65.0%
!! AGCCCTTCACGGGCTAGGGT+GGG - chr3_3:6144714-6144733 None:intergenic 65.0%
! TCAGTGGCGGAGCCCTTCAC+GGG - chr3_3:6144724-6144743 None:intergenic 65.0%
GGTGAGCGGGGTTCGAACCA+CGG - chr3_3:6145062-6145081 None:intergenic 65.0%
GCCGTGGCCATGGTTGTCCT+TGG - chr3_3:6145386-6145405 None:intergenic 65.0%
GGCAGCCTCAGGAATTGGCG+AGG + chr3_3:6145954-6145973 Msa0439780:CDS 65.0%
CCTTTGGGTCGGCCCTGCAA+CGG - chr3_3:6146122-6146141 None:intergenic 65.0%
GCAGGGCCGACCCAAAGGTA+AGG + chr3_3:6146124-6146143 Msa0439780:intron 65.0%
TAGGCCATGCCGGCCTACAG+GGG + chr3_3:6148951-6148970 Msa0439780:three_prime_UTR 65.0%
TGGCCCACCCTAGCCCGTGA+AGG + chr3_3:6144708-6144727 Msa0439780:intron 70.0%
GGCCCACCCTAGCCCGTGAA+GGG + chr3_3:6144709-6144728 Msa0439780:intron 70.0%
!! GAGCCCTTCACGGGCTAGGG+TGG - chr3_3:6144715-6144734 None:intergenic 70.0%
! GCGGAGCCCTTCACGGGCTA+GGG - chr3_3:6144718-6144737 None:intergenic 70.0%
CCGTTGCAGGGCCGACCCAA+AGG + chr3_3:6146119-6146138 Msa0439780:intron 70.0%
TAGGCCCCTGTAGGCCGGCA+TGG - chr3_3:6148958-6148977 None:intergenic 70.0%
TGCCGGCCTACAGGGGCCTA+CGG + chr3_3:6148958-6148977 Msa0439780:three_prime_UTR 70.0%
GACCGTAGGCCCCTGTAGGC+CGG - chr3_3:6148963-6148982 None:intergenic 70.0%
GCCTACAGGGGCCTACGGTC+TGG + chr3_3:6148963-6148982 Msa0439780:three_prime_UTR 70.0%
GCCAGACCGTAGGCCCCTGT+AGG - chr3_3:6148967-6148986 None:intergenic 70.0%
AGGGTGGGCCACGACCCACC+TGG - chr3_3:6144699-6144718 None:intergenic 75.0%
GGCGGAGCCCTTCACGGGCT+AGG - chr3_3:6144719-6144738 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 6141181 6149050 6141181 ID=Msa0439780;Name=Msa0439780
chr3_3 mRNA 6141181 6149050 6141181 ID=Msa0439780-mRNA-1;Parent=Msa0439780;Name=Msa0439780-mRNA-1;_AED=0.38;_eAED=0.38;_QI=230|1|1|1|0.83|0.71|7|305|291
chr3_3 exon 6141181 6141438 6141181 ID=Msa0439780-mRNA-1:exon:1245;Parent=Msa0439780-mRNA-1
chr3_3 exon 6145920 6145975 6145920 ID=Msa0439780-mRNA-1:exon:1246;Parent=Msa0439780-mRNA-1
chr3_3 exon 6146542 6146734 6146542 ID=Msa0439780-mRNA-1:exon:1247;Parent=Msa0439780-mRNA-1
chr3_3 exon 6146836 6146924 6146836 ID=Msa0439780-mRNA-1:exon:1248;Parent=Msa0439780-mRNA-1
chr3_3 exon 6147978 6148109 6147978 ID=Msa0439780-mRNA-1:exon:1249;Parent=Msa0439780-mRNA-1
chr3_3 exon 6148253 6148381 6148253 ID=Msa0439780-mRNA-1:exon:1250;Parent=Msa0439780-mRNA-1
chr3_3 exon 6148497 6149050 6148497 ID=Msa0439780-mRNA-1:exon:1251;Parent=Msa0439780-mRNA-1
chr3_3 five_prime_UTR 6141181 6141410 6141181 ID=Msa0439780-mRNA-1:five_prime_utr;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6141411 6141438 6141411 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6145920 6145975 6145920 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6146542 6146734 6146542 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6146836 6146924 6146836 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6147978 6148109 6147978 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6148253 6148381 6148253 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 CDS 6148497 6148745 6148497 ID=Msa0439780-mRNA-1:cds;Parent=Msa0439780-mRNA-1
chr3_3 three_prime_UTR 6148746 6149050 6148746 ID=Msa0439780-mRNA-1:three_prime_utr;Parent=Msa0439780-mRNA-1
Gene Sequence

>Msa0439780

ATGAAAAAAATTATATACCAAATACAAAAAAGCATGGAAAGAAAAGTAGTACTAATCACTGGGGCAGCCTCAGGAATTGGCGAGGAACTAGCTTATGAGTATGCTAAGAGAGGAGCAAGGTTGTCTCTAGTTGACATTCGAAAAGAGAATCTTGTAGCAGTGGCGGATATGGCAACATCCCTTGGTTCCCCTGATGTTACTATCATTGGTGCAGATGTTTCCAAGGTTGAAGACAGTAAGCGGTTTATTGATGAAACAATCAAACACTTTGGACGATTGGATCATCTGGTAAATAATGCAGGAGTTTCTGGCATTCCAATTTTGATAGAGGATATTCATGATTTAACTAAATACAATCCAATTATGGATACAAATTTCTGGGGAGCAGTTCATGGCACTCTATATGCAATCCCACATCTCAAAAACAGCAAAGGCAGGATCATAGTGGTTGCTTCGGGTTGTGGATGGTTCCCACTTCCAAGATTAAGTCTCTATAATGCTAGTAAGGCTGCGACAATAAGCTTCTTTGAGACTCTAAGAATTGAACTTGGTTGGACCATTGGCATTACAATCGTCACACCTGGTTTTATCAAAACAAATATGGCATTGAAGGCATATGAAGACGAGGCTAGTCTGCAATGCATTCCATTGGGATCAGCAAATGAATGTGCCAAAGACATAGTAAAAAGTGCGTGCAGGGGAGATATGTATGTGACAAACCCTTCATGGCTCAAAGTGATGTTTCCTTTTCAGGTGCTTTATCCTGAGTTAGTGGACTGGGCAGAACGACACATCTTTGGGCTTTGGCAAAAGCCTTCTTGTAAGAAGGGCGATCTTCGTATGTCTAAGAATAACCACGTGCTTAAGACAGAATAA
Protein sequence

>Msa0439780

MKKIIYQIQKSMERKVVLITGAASGIGEELAYEYAKRGARLSLVDIRKENLVAVADMATSLGSPDVTIIGADVSKVEDSKRFIDETIKHFGRLDHLVNNAGVSGIPILIEDIHDLTKYNPIMDTNFWGAVHGTLYAIPHLKNSKGRIIVVASGCGWFPLPRLSLYNASKAATISFFETLRIELGWTIGITIVTPGFIKTNMALKAYEDEASLQCIPLGSANECAKDIVKSACRGDMYVTNPSWLKVMFPFQVLYPELVDWAERHIFGLWQKPSCKKGDLRMSKNNHVLKTE*