Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554140 | XP_003607447.1 | 70.219 | 319 | 30 | 6 | 1 | 316 | 1 | 257 | 6.89e-131 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554140 | G7JST7 | 70.219 | 319 | 30 | 6 | 1 | 316 | 1 | 257 | 3.29e-131 | 383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0554140 | 0.809751 | 1.620385e-50 | -8.615850e-47 |
| Msa0020630 | Msa0554140 | 0.806360 | 8.541934e-50 | -8.615850e-47 |
| Msa0027540 | Msa0554140 | 0.826796 | 2.228845e-54 | -8.615850e-47 |
| Msa0030730 | Msa0554140 | 0.824066 | 9.868853e-54 | -8.615850e-47 |
| Msa0032120 | Msa0554140 | 0.813545 | 2.424655e-51 | -8.615850e-47 |
| Msa0037820 | Msa0554140 | 0.805720 | 1.165070e-49 | -8.615850e-47 |
| Msa0038350 | Msa0554140 | -0.814185 | 1.752482e-51 | -8.615850e-47 |
| Msa0063580 | Msa0554140 | 0.800555 | 1.364184e-48 | -8.615850e-47 |
| Msa0073820 | Msa0554140 | 0.804226 | 2.391111e-49 | -8.615850e-47 |
| Msa0075310 | Msa0554140 | 0.821526 | 3.852695e-53 | -8.615850e-47 |
| Msa0084680 | Msa0554140 | 0.816882 | 4.398577e-52 | -8.615850e-47 |
| Msa0091770 | Msa0554140 | 0.805077 | 1.588529e-49 | -8.615850e-47 |
| Msa0101320 | Msa0554140 | -0.822575 | 2.201034e-53 | -8.615850e-47 |
| Msa0149500 | Msa0554140 | 0.812189 | 4.804893e-51 | -8.615850e-47 |
| Msa0159750 | Msa0554140 | 0.807177 | 5.741554e-50 | -8.615850e-47 |
| Msa0168100 | Msa0554140 | 0.810000 | 1.432943e-50 | -8.615850e-47 |
| Msa0170680 | Msa0554140 | 0.807757 | 4.324778e-50 | -8.615850e-47 |
| Msa0183610 | Msa0554140 | 0.801768 | 7.705602e-49 | -8.615850e-47 |
| Msa0185700 | Msa0554140 | 0.808682 | 2.746707e-50 | -8.615850e-47 |
| Msa0207000 | Msa0554140 | 0.815769 | 7.800720e-52 | -8.615850e-47 |
| Msa0376510 | Msa0554140 | 0.803686 | 3.096294e-49 | -8.615850e-47 |
| Msa0380310 | Msa0554140 | 0.837180 | 6.051834e-57 | -8.615850e-47 |
| Msa0425050 | Msa0554140 | 0.808928 | 2.433471e-50 | -8.615850e-47 |
| Msa0246690 | Msa0554140 | 0.824633 | 7.260040e-54 | -8.615850e-47 |
| Msa0257310 | Msa0554140 | 0.814010 | 1.915017e-51 | -8.615850e-47 |
| Msa0265210 | Msa0554140 | 0.800173 | 1.631771e-48 | -8.615850e-47 |
| Msa0269360 | Msa0554140 | 0.810901 | 9.153833e-51 | -8.615850e-47 |
| Msa0294780 | Msa0554140 | 0.800546 | 1.369767e-48 | -8.615850e-47 |
| Msa0296610 | Msa0554140 | 0.814143 | 1.790428e-51 | -8.615850e-47 |
| Msa0298940 | Msa0554140 | 0.817234 | 3.666204e-52 | -8.615850e-47 |
| Msa0298970 | Msa0554140 | 0.832361 | 9.875944e-56 | -8.615850e-47 |
| Msa0318270 | Msa0554140 | 0.803245 | 3.821869e-49 | -8.615850e-47 |
| Msa0342200 | Msa0554140 | 0.804172 | 2.453989e-49 | -8.615850e-47 |
| Msa0352510 | Msa0554140 | 0.800754 | 1.242317e-48 | -8.615850e-47 |
| Msa0524050 | Msa0554140 | 0.804944 | 1.693696e-49 | -8.615850e-47 |
| Msa0524120 | Msa0554140 | 0.811681 | 6.199385e-51 | -8.615850e-47 |
| Msa0526640 | Msa0554140 | -0.860646 | 1.786370e-63 | -8.615850e-47 |
| Msa0546380 | Msa0554140 | 0.815198 | 1.045226e-51 | -8.615850e-47 |
| Msa0546840 | Msa0554140 | 0.832311 | 1.016372e-55 | -8.615850e-47 |
| Msa0554140 | Msa0574170 | 0.807250 | 5.541725e-50 | -8.615850e-47 |
| Msa0554140 | Msa0575250 | 0.813287 | 2.762438e-51 | -8.615850e-47 |
| Msa0554140 | Msa0576420 | 0.819234 | 1.292573e-52 | -8.615850e-47 |
| Msa0554140 | Msa0577230 | 0.812968 | 3.245666e-51 | -8.615850e-47 |
| Msa0554140 | Msa0605620 | 0.802218 | 6.226080e-49 | -8.615850e-47 |
| Msa0554140 | Msa0619330 | 0.803094 | 4.107849e-49 | -8.615850e-47 |
| Msa0554140 | Msa0621120 | 0.809802 | 1.580462e-50 | -8.615850e-47 |
| Msa0554140 | Msa0629370 | 0.807816 | 4.201106e-50 | -8.615850e-47 |
| Msa0554140 | Msa0639370 | 0.817318 | 3.508707e-52 | -8.615850e-47 |
| Msa0554140 | Msa0677820 | 0.829000 | 6.573762e-55 | -8.615850e-47 |
| Msa0554140 | Msa0704220 | 0.830125 | 3.502548e-55 | -8.615850e-47 |
| Msa0554140 | Msa0707780 | 0.811760 | 5.957420e-51 | -8.615850e-47 |
| Msa0554140 | Msa0709480 | 0.812225 | 4.718621e-51 | -8.615850e-47 |
| Msa0554140 | Msa0730180 | 0.835955 | 1.241147e-56 | -8.615850e-47 |
| Msa0554140 | Msa0743100 | 0.824465 | 7.955904e-54 | -8.615850e-47 |
| Msa0554140 | Msa0743650 | 0.805027 | 1.627188e-49 | -8.615850e-47 |
| Msa0554140 | Msa0746600 | 0.822461 | 2.339896e-53 | -8.615850e-47 |
| Msa0554140 | Msa0750380 | 0.807588 | 4.698018e-50 | -8.615850e-47 |
| Msa0554140 | Msa0769830 | 0.824357 | 8.432790e-54 | -8.615850e-47 |
| Msa0554140 | Msa0780140 | 0.800403 | 1.465385e-48 | -8.615850e-47 |
| Msa0554140 | Msa0792510 | 0.802543 | 5.336283e-49 | -8.615850e-47 |
| Msa0554140 | Msa0797220 | 0.809744 | 1.626459e-50 | -8.615850e-47 |
| Msa0554140 | Msa0805940 | 0.816733 | 4.750197e-52 | -8.615850e-47 |
| Msa0554140 | Msa0827620 | -0.801939 | 7.106089e-49 | -8.615850e-47 |
| Msa0554140 | Msa0830720 | 0.814555 | 1.451267e-51 | -8.615850e-47 |
| Msa0554140 | Msa0843690 | 0.841060 | 5.972856e-58 | -8.615850e-47 |
| Msa0554140 | Msa0846640 | 0.830408 | 2.986955e-55 | -8.615850e-47 |
| Msa0554140 | Msa0848360 | 0.801192 | 1.010992e-48 | -8.615850e-47 |
| Msa0554140 | Msa0848760 | 0.829323 | 5.490190e-55 | -8.615850e-47 |
| Msa0554140 | Msa0854570 | 0.811278 | 7.584243e-51 | -8.615850e-47 |
| Msa0554140 | Msa0863770 | 0.802061 | 6.707486e-49 | -8.615850e-47 |
| Msa0554140 | Msa0882700 | 0.814211 | 1.729073e-51 | -8.615850e-47 |
| Msa0554140 | Msa0890250 | 0.806977 | 6.327948e-50 | -8.615850e-47 |
| Msa0554140 | Msa0925160 | 0.814604 | 1.415453e-51 | -8.615850e-47 |
| Msa0554140 | Msa0937940 | 0.823344 | 1.456946e-53 | -8.615850e-47 |
| Msa0554140 | Msa0955260 | 0.825876 | 3.691399e-54 | -8.615850e-47 |
| Msa0554140 | Msa0975080 | 0.801773 | 7.688118e-49 | -8.615850e-47 |
| Msa0554140 | Msa1004210 | 0.803260 | 3.795305e-49 | -8.615850e-47 |
| Msa0554140 | Msa1028460 | 0.814342 | 1.617618e-51 | -8.615850e-47 |
| Msa0554140 | Msa1046610 | 0.802419 | 5.662210e-49 | -8.615850e-47 |
| Msa0554140 | Msa1058010 | 0.800652 | 1.303296e-48 | -8.615850e-47 |
| Msa0554140 | Msa1073840 | 0.815133 | 1.080634e-51 | -8.615850e-47 |
| Msa0554140 | Msa1080840 | 0.812576 | 3.954183e-51 | -8.615850e-47 |
| Msa0554140 | Msa1084490 | 0.818716 | 1.695007e-52 | -8.615850e-47 |
| Msa0554140 | Msa1102540 | 0.829046 | 6.406311e-55 | -8.615850e-47 |
| Msa0554140 | Msa1112000 | 0.808923 | 2.439925e-50 | -8.615850e-47 |
| Msa0554140 | Msa1114020 | 0.833672 | 4.661047e-56 | -8.615850e-47 |
| Msa0554140 | Msa1118980 | 0.813375 | 2.642580e-51 | -8.615850e-47 |
| Msa0554140 | Msa1125780 | 0.830640 | 2.621438e-55 | -8.615850e-47 |
| Msa0554140 | Msa1125950 | 0.830378 | 3.038294e-55 | -8.615850e-47 |
| Msa0554140 | Msa1129560 | 0.809681 | 1.678267e-50 | -8.615850e-47 |
| Msa0554140 | Msa1129720 | 0.810318 | 1.223570e-50 | -8.615850e-47 |
| Msa0554140 | Msa1140010 | 0.827101 | 1.883912e-54 | -8.615850e-47 |
| Msa0554140 | Msa1159100 | 0.802849 | 4.614522e-49 | -8.615850e-47 |
| Msa0554140 | Msa1159990 | 0.805507 | 1.291077e-49 | -8.615850e-47 |
| Msa0554140 | Msa1171340 | 0.826242 | 3.021325e-54 | -8.615850e-47 |
| Msa0554140 | Msa1183390 | 0.819426 | 1.168998e-52 | -8.615850e-47 |
| Msa0554140 | Msa1190910 | 0.802382 | 5.762318e-49 | -8.615850e-47 |
| Msa0554140 | Msa1201990 | 0.804736 | 1.871645e-49 | -8.615850e-47 |
| Msa0554140 | Msa1210770 | 0.815880 | 7.369166e-52 | -8.615850e-47 |
| Msa0554140 | Msa1211070 | 0.805275 | 1.444025e-49 | -8.615850e-47 |
| Msa0554140 | Msa1229660 | 0.810717 | 1.003139e-50 | -8.615850e-47 |
| Msa0554140 | Msa1229690 | 0.820962 | 5.198393e-53 | -8.615850e-47 |
| Msa0554140 | Msa1237030 | 0.811031 | 8.580400e-51 | -8.615850e-47 |
| Msa0554140 | Msa1262310 | 0.818250 | 2.161717e-52 | -8.615850e-47 |
| Msa0554140 | Msa1271510 | 0.811518 | 6.726585e-51 | -8.615850e-47 |
| Msa0554140 | Msa1280120 | 0.808861 | 2.515168e-50 | -8.615850e-47 |
| Msa0554140 | Msa1284520 | 0.809683 | 1.676176e-50 | -8.615850e-47 |
| Msa0554140 | Msa1309360 | 0.812534 | 4.040074e-51 | -8.615850e-47 |
| Msa0554140 | Msa1310110 | 0.822892 | 1.857131e-53 | -8.615850e-47 |
| Msa0554140 | Msa1354040 | 0.801883 | 7.297332e-49 | -8.615850e-47 |
| Msa0554140 | Msa1376640 | 0.803336 | 3.660152e-49 | -8.615850e-47 |
| Msa0554140 | Msa1385620 | 0.802871 | 4.566023e-49 | -8.615850e-47 |
| Msa0554140 | Msa1385900 | 0.843500 | 1.348365e-58 | -8.615850e-47 |
| Msa0554140 | Msa1398480 | 0.819001 | 1.460507e-52 | -8.615850e-47 |
| Msa0554140 | Msa1412520 | 0.819780 | 9.705372e-53 | -8.615850e-47 |
| Msa0554140 | Msa1420520 | 0.808978 | 2.373900e-50 | -8.615850e-47 |
| Msa0554140 | Msa1428420 | 0.814660 | 1.376030e-51 | -8.615850e-47 |
| Msa0554140 | Msa1430760 | 0.805734 | 1.157106e-49 | -8.615850e-47 |
| Msa0554140 | Msa1431730 | 0.801739 | 7.811572e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554140 | MtrunA17_Chr4g0040021 | 70.219 | 319 | 30 | 6 | 1 | 316 | 1 | 257 | 6.33e-135 | 383 |
| Msa0554140 | MtrunA17_Chr3g0129141 | 55.294 | 85 | 35 | 1 | 83 | 164 | 67 | 151 | 1.44e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554140 | AT1G08530.2 | 62.810 | 121 | 36 | 4 | 51 | 165 | 59 | 176 | 4.57e-36 | 129 |
| Msa0554140 | AT1G08530.3 | 47.977 | 173 | 74 | 5 | 51 | 210 | 59 | 228 | 5.51e-35 | 127 |
| Msa0554140 | AT1G08530.1 | 62.500 | 120 | 36 | 4 | 51 | 164 | 59 | 175 | 8.05e-35 | 127 |
| Msa0554140 | AT1G08530.1 | 63.636 | 99 | 30 | 2 | 215 | 313 | 165 | 257 | 4.44e-32 | 120 |
| Msa0554140 | AT5G09995.1 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 1.38e-24 | 99.0 |
| Msa0554140 | AT5G09995.3 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 1.71e-24 | 100 |
| Msa0554140 | AT5G09995.2 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 1.72e-24 | 100 |
Find 79 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGAATTGAGTGATTTA+AGG | 0.180421 | 4_1:-51392820 | Msa0554140:intron |
| GTTAAGCTTAGGAGAATTAA+AGG | 0.197857 | 4_1:+51395029 | None:intergenic |
| ATCTTCGGTTATAATGTAAA+AGG | 0.217382 | 4_1:-51389153 | Msa0554140:three_prime_UTR |
| TAAGGAATTCATGGTGAATT+AGG | 0.224410 | 4_1:+51395281 | None:intergenic |
| ATACCTTTCGGATGTATTAT+TGG | 0.231218 | 4_1:-51391132 | Msa0554140:CDS |
| ATGGCTGCTATGAGGCTTTC+AGG | 0.233469 | 4_1:-51392863 | Msa0554140:CDS |
| AACAGGTTGCAGAGATATTT+CGG | 0.239317 | 4_1:+51389406 | None:intergenic |
| ATACCTTCCCACACTATATT+AGG | 0.247154 | 4_1:+51389201 | None:intergenic |
| ATTTCATCTTGTTCCTCTAA+TGG | 0.255078 | 4_1:-51395132 | Msa0554140:CDS |
| AGCTTGATGAACATGATTTC+AGG | 0.284276 | 4_1:-51389332 | Msa0554140:CDS |
| TAGAAGAGATGAAGAGAAAA+TGG | 0.289595 | 4_1:+51395175 | None:intergenic |
| ATACAGATACGGAAATAAAA+TGG | 0.302157 | 4_1:-51391091 | Msa0554140:CDS |
| AGGAACAAGATGAAATGAAT+TGG | 0.324863 | 4_1:+51395139 | None:intergenic |
| GCTTTGCAAGCAGCAGAAAC+TGG | 0.326443 | 4_1:-51390758 | Msa0554140:CDS |
| TCCGAAAGGTATCCGGATTC+CGG | 0.329694 | 4_1:+51391143 | None:intergenic |
| AACTTCATCTGAAGAATTGC+TGG | 0.335169 | 4_1:+51395107 | None:intergenic |
| ACAGGTTGCAGAGATATTTC+GGG | 0.348410 | 4_1:+51389407 | None:intergenic |
| GGAACAAGATGAAATGAATT+GGG | 0.353492 | 4_1:+51395140 | None:intergenic |
| TCCGGAATCCGGATACCTTT+CGG | 0.358894 | 4_1:-51391144 | Msa0554140:CDS |
| CATCAGAGATTTAGCCCTTA+AGG | 0.374911 | 4_1:-51391057 | Msa0554140:CDS |
| TGGCAAAATTTGAATATCTT+CGG | 0.379687 | 4_1:-51389168 | Msa0554140:three_prime_UTR |
| TCTCTGCAACCTGTTGTTGT+AGG | 0.395694 | 4_1:-51389398 | Msa0554140:CDS |
| AGAAGATATAATCTTCCTTA+AGG | 0.411280 | 4_1:+51391042 | None:intergenic |
| CTTGCAGCTCCTACAACAAC+AGG | 0.413263 | 4_1:+51389389 | None:intergenic |
| GTATCGTATTGGTGCATCAT+AGG | 0.418662 | 4_1:+51392155 | None:intergenic |
| AGAATTGCTGGATCCATTAG+AGG | 0.430075 | 4_1:+51395119 | None:intergenic |
| AAACAGATGCATCCGGAATC+CGG | 0.437322 | 4_1:-51391155 | Msa0554140:intron |
| AGAAGTGAGTAAGGAATTCA+TGG | 0.441983 | 4_1:+51395272 | None:intergenic |
| GAAGATATAATCTTCCTTAA+GGG | 0.444902 | 4_1:+51391043 | None:intergenic |
| TGATAGAAAACTTACAAATA+GGG | 0.448957 | 4_1:+51394004 | None:intergenic |
| TCAGCTGAAACGAGTTAAAT+CGG | 0.459031 | 4_1:-51395330 | Msa0554140:five_prime_UTR |
| TCATCAAGCTCTTTGTTGCT+CGG | 0.460624 | 4_1:+51389345 | None:intergenic |
| TAATACATCCGAAAGGTATC+CGG | 0.474294 | 4_1:+51391136 | None:intergenic |
| TGGCTGCTATGAGGCTTTCA+GGG | 0.478870 | 4_1:-51392862 | Msa0554140:CDS |
| CAGACTTCAGTGGCATTCAC+TGG | 0.482597 | 4_1:-51394050 | Msa0554140:CDS |
| GAAACTGGAATTCGACATAT+CGG | 0.482730 | 4_1:-51390743 | Msa0554140:CDS |
| GTGTCTTAATACTGTGAGAA+TGG | 0.494934 | 4_1:-51389113 | Msa0554140:three_prime_UTR |
| TGATCACTGAAGTTAAGCTT+AGG | 0.498524 | 4_1:+51395018 | None:intergenic |
| TATGAATGAGATAGAGTTGG+AGG | 0.502116 | 4_1:-51395424 | Msa0554140:five_prime_UTR |
| TCTCGCATTCATTGCTTGCA+CGG | 0.504199 | 4_1:-51394983 | Msa0554140:intron |
| TCTTCGGTTATAATGTAAAA+GGG | 0.506338 | 4_1:-51389152 | Msa0554140:three_prime_UTR |
| ATTCGCTCTCTCTTCAATCA+TGG | 0.506919 | 4_1:+51389433 | None:intergenic |
| ACGTAATGAAGAAGTGAGTA+AGG | 0.507477 | 4_1:+51395263 | None:intergenic |
| ATCCGATACTCGTATCGTAT+TGG | 0.524986 | 4_1:+51392144 | None:intergenic |
| CTCATAGCAGCCATGGTGCT+CGG | 0.528469 | 4_1:+51392872 | None:intergenic |
| CGAGCACCATGGCTGCTATG+AGG | 0.529505 | 4_1:-51392871 | Msa0554140:CDS |
| TGCTATGAGGCTTTCAGGGA+TGG | 0.535004 | 4_1:-51392858 | Msa0554140:CDS |
| GAATTAAAGGAAGGAACTTG+AGG | 0.544279 | 4_1:+51395042 | None:intergenic |
| TGAGTATAACAGTAACCTAC+AGG | 0.546854 | 4_1:-51389063 | Msa0554140:three_prime_UTR |
| GATGAACATGATTTCAGGAA+GGG | 0.554707 | 4_1:-51389327 | Msa0554140:CDS |
| CGTATCTGTATCGGATACGT+TGG | 0.560319 | 4_1:+51391103 | None:intergenic |
| AGAAAGACTTCTAGAGCAGT+TGG | 0.562509 | 4_1:-51389368 | Msa0554140:CDS |
| TTGTTGTAGTTGAAGTGTGT+GGG | 0.567926 | 4_1:+51395235 | None:intergenic |
| GTTGTTGTAGTTGAAGTGTG+TGG | 0.568046 | 4_1:+51395234 | None:intergenic |
| GTATCTGTATCGGATACGTT+GGG | 0.568110 | 4_1:+51391104 | None:intergenic |
| CACCAATACGATACGAGTAT+CGG | 0.568871 | 4_1:-51392146 | Msa0554140:CDS |
| ACTAGATTACAATGAGAAGA+GGG | 0.575460 | 4_1:+51389018 | None:intergenic |
| GGGAAGGTATTGAAAAGTAA+TGG | 0.576809 | 4_1:-51389188 | Msa0554140:three_prime_UTR |
| CAACGTATCCGATACAGATA+CGG | 0.578421 | 4_1:-51391102 | Msa0554140:CDS |
| TACTAGATTACAATGAGAAG+AGG | 0.581229 | 4_1:+51389017 | None:intergenic |
| TGATATGAATGAGATAGAGT+TGG | 0.582629 | 4_1:-51395427 | Msa0554140:five_prime_UTR |
| GAACAAGATGAAATGAATTG+GGG | 0.586685 | 4_1:+51395141 | None:intergenic |
| ATTGTCTCTGCAGACTTCAG+TGG | 0.589317 | 4_1:-51394060 | Msa0554140:intron |
| TAGAAAACTTACAAATAGGG+TGG | 0.592421 | 4_1:+51394007 | None:intergenic |
| AGCTTAGGAGAATTAAAGGA+AGG | 0.592909 | 4_1:+51395033 | None:intergenic |
| TGAAAGCCTCATAGCAGCCA+TGG | 0.594421 | 4_1:+51392865 | None:intergenic |
| ACTTACAAATAGGGTGGGAA+CGG | 0.604684 | 4_1:+51394013 | None:intergenic |
| TGATGAACATGATTTCAGGA+AGG | 0.611868 | 4_1:-51389328 | Msa0554140:CDS |
| AGAAAACTTACAAATAGGGT+GGG | 0.618122 | 4_1:+51394008 | None:intergenic |
| ATTAGCCAGGAAATAACAGA+AGG | 0.629328 | 4_1:-51390800 | Msa0554140:intron |
| AATGTGTCCTAATATAGTGT+GGG | 0.630740 | 4_1:-51389208 | Msa0554140:three_prime_UTR |
| AATTCGACATATCGGTTCAG+TGG | 0.637592 | 4_1:-51390735 | Msa0554140:CDS |
| TGTCCTAATATAGTGTGGGA+AGG | 0.637749 | 4_1:-51389204 | Msa0554140:three_prime_UTR |
| TAATGTGTCCTAATATAGTG+TGG | 0.644069 | 4_1:-51389209 | Msa0554140:three_prime_UTR |
| GCTAGCGGATACAGCTCGTG+AGG | 0.655549 | 4_1:-51392900 | Msa0554140:CDS |
| GCTACATAAAAGAAGTGCAG+TGG | 0.664730 | 4_1:-51389091 | Msa0554140:three_prime_UTR |
| ATGCCAATAATACATCCGAA+AGG | 0.679314 | 4_1:+51391129 | None:intergenic |
| TGAGGAACTACCGAGCACCA+TGG | 0.718645 | 4_1:-51392882 | Msa0554140:CDS |
| GTATCGGATACATCGATATG+CGG | 0.751620 | 4_1:-51392130 | Msa0554140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAATAAAACTAAAT+AGG | + | chr4_1:51390687-51390706 | None:intergenic | 10.0% |
| !!! | TAAAAAAGAGTATGAAAATT+AGG | + | chr4_1:51389711-51389730 | None:intergenic | 15.0% |
| !! | AATATTACAAATGATAAAAG+AGG | + | chr4_1:51390579-51390598 | None:intergenic | 15.0% |
| !! | TGCTATTAAAGAAAATAAAT+GGG | + | chr4_1:51391196-51391215 | None:intergenic | 15.0% |
| !! | ATGCTATTAAAGAAAATAAA+TGG | + | chr4_1:51391197-51391216 | None:intergenic | 15.0% |
| !! | TAATAGCATCATAAAATTAT+TGG | - | chr4_1:51391208-51391227 | Msa0554140:intron | 15.0% |
| !! | AATTAAACAAATTTGAATTG+AGG | + | chr4_1:51392485-51392504 | None:intergenic | 15.0% |
| !! | AAGATAAAATTAACAAAATC+TGG | + | chr4_1:51392611-51392630 | None:intergenic | 15.0% |
| !!! | TAGAAATTTTTAACATGAAA+CGG | + | chr4_1:51392663-51392682 | None:intergenic | 15.0% |
| !!! | AGAAGTAATTTTTTTTTTGT+AGG | - | chr4_1:51392794-51392813 | Msa0554140:intron | 15.0% |
| !!! | GAAGTAATTTTTTTTTTGTA+GGG | - | chr4_1:51392795-51392814 | Msa0554140:intron | 15.0% |
| !! | AAACCTATTAAAATTAAGTA+AGG | - | chr4_1:51392824-51392843 | Msa0554140:CDS | 15.0% |
| !!! | AATAAAACTTTAAAAGAAGA+AGG | - | chr4_1:51393003-51393022 | Msa0554140:intron | 15.0% |
| !! | AAACAAAAAGCAAAAAATTA+CGG | + | chr4_1:51393209-51393228 | None:intergenic | 15.0% |
| !! | TAAGCTATTTATATAACAAA+AGG | - | chr4_1:51393799-51393818 | Msa0554140:intron | 15.0% |
| !! | TCATGATCTTAAAAATTATT+GGG | + | chr4_1:51395434-51395453 | None:intergenic | 15.0% |
| !!! | TTTCATACTCTTTTTTACTT+AGG | - | chr4_1:51389714-51389733 | Msa0554140:intron | 20.0% |
| !! | CAAATAGAAAGATAAATTCA+AGG | + | chr4_1:51390264-51390283 | None:intergenic | 20.0% |
| !! | TGATAGAAAACTTACAAATA+GGG | + | chr4_1:51390385-51390404 | None:intergenic | 20.0% |
| !!! | TAGTTTTGTTAGTTTTATGT+TGG | - | chr4_1:51390718-51390737 | Msa0554140:CDS | 20.0% |
| !!! | AGTTTTGTTAGTTTTATGTT+GGG | - | chr4_1:51390719-51390738 | Msa0554140:CDS | 20.0% |
| !!! | CCAAGAAAAAATATTTTGTT+TGG | + | chr4_1:51390833-51390852 | None:intergenic | 20.0% |
| !!! | CCAAACAAAATATTTTTTCT+TGG | - | chr4_1:51390830-51390849 | Msa0554140:intron | 20.0% |
| !!! | AACAAAATATTTTTTCTTGG+AGG | - | chr4_1:51390833-51390852 | Msa0554140:intron | 20.0% |
| !!! | ACAAAATATTTTTTCTTGGA+GGG | - | chr4_1:51390834-51390853 | Msa0554140:intron | 20.0% |
| !! | TTTCTTCATTTAGCAATTAT+TGG | - | chr4_1:51391259-51391278 | Msa0554140:intron | 20.0% |
| !! | ATCCTCATATTTATCTTATT+AGG | - | chr4_1:51391359-51391378 | Msa0554140:intron | 20.0% |
| !! | AACCTAATAAGATAAATATG+AGG | + | chr4_1:51391364-51391383 | None:intergenic | 20.0% |
| !! | TCATATAGAAATATGTAACA+GGG | + | chr4_1:51391642-51391661 | None:intergenic | 20.0% |
| !! | ATCATATAGAAATATGTAAC+AGG | + | chr4_1:51391643-51391662 | None:intergenic | 20.0% |
| !!! | TGTTACATATTTCTATATGA+TGG | - | chr4_1:51391642-51391661 | Msa0554140:intron | 20.0% |
| !! | AAGGATATAAGGATTTAAAT+TGG | - | chr4_1:51392080-51392099 | Msa0554140:intron | 20.0% |
| !!! | TTATGAGATTTTTTCTTTCA+AGG | - | chr4_1:51392172-51392191 | Msa0554140:intron | 20.0% |
| !! | TACCAGTTAAGATAAAATAA+AGG | - | chr4_1:51392345-51392364 | Msa0554140:intron | 20.0% |
| !! | ACCAGTTAAGATAAAATAAA+GGG | - | chr4_1:51392346-51392365 | Msa0554140:intron | 20.0% |
| !!! | TAAAGGGTTAAATATGATTT+TGG | - | chr4_1:51392362-51392381 | Msa0554140:intron | 20.0% |
| !!! | TAAAAGGTCTCAATTTTATA+GGG | + | chr4_1:51392389-51392408 | None:intergenic | 20.0% |
| !!! | TTAAAAGGTCTCAATTTTAT+AGG | + | chr4_1:51392390-51392409 | None:intergenic | 20.0% |
| !! | AGAACTACTAAAATTAAGTA+AGG | + | chr4_1:51392420-51392439 | None:intergenic | 20.0% |
| !! | GAGTGCAAAAAAAAAATTTA+GGG | + | chr4_1:51392449-51392468 | None:intergenic | 20.0% |
| !! | TGAGTGCAAAAAAAAAATTT+AGG | + | chr4_1:51392450-51392469 | None:intergenic | 20.0% |
| !!! | AGTCCTTACTTAATTTTAAT+AGG | + | chr4_1:51392830-51392849 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr4_1:51392882-51392901 | None:intergenic | 20.0% |
| !! | TATTGAAAAATTAGTTAGAG+AGG | - | chr4_1:51392909-51392928 | Msa0554140:CDS | 20.0% |
| !! | ATTGAAAAATTAGTTAGAGA+GGG | - | chr4_1:51392910-51392929 | Msa0554140:CDS | 20.0% |
| !!! | ACTTTGAAATTTTAATCACA+TGG | - | chr4_1:51393455-51393474 | Msa0554140:intron | 20.0% |
| !! | AAAAATAATTCCCGATAAAA+AGG | + | chr4_1:51393503-51393522 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATGCAAACA+GGG | + | chr4_1:51393733-51393752 | None:intergenic | 20.0% |
| !! | ATTAAATTGTTTATGCAAAC+AGG | + | chr4_1:51393734-51393753 | None:intergenic | 20.0% |
| !! | GAATAAATCAAATAATTCCA+AGG | + | chr4_1:51394062-51394081 | None:intergenic | 20.0% |
| !!! | TATTTGATTTATTCCTTTAG+TGG | - | chr4_1:51394068-51394087 | Msa0554140:intron | 20.0% |
| !!! | ATTTGATTTATTCCTTTAGT+GGG | - | chr4_1:51394069-51394088 | Msa0554140:intron | 20.0% |
| !! | TTTATTTATCATGTTTCTTC+CGG | - | chr4_1:51394371-51394390 | Msa0554140:intron | 20.0% |
| !! | AGAAAATGAATTTATTGATG+TGG | + | chr4_1:51394525-51394544 | None:intergenic | 20.0% |
| !!! | GTTCAATTTTTAGCATTAAA+TGG | + | chr4_1:51394586-51394605 | None:intergenic | 20.0% |
| !! | AAGAAATAGATATCTAGTAT+TGG | - | chr4_1:51394634-51394653 | Msa0554140:intron | 20.0% |
| !! | CATGATCTTAAAAATTATTG+GGG | + | chr4_1:51395433-51395452 | None:intergenic | 20.0% |
| !! | ATGCAAAATCTTTTGTGTTT+AGG | - | chr4_1:51389427-51389446 | Msa0554140:CDS | 25.0% |
| !! | ATATTTTCCTAAGCTACAAT+AGG | + | chr4_1:51389556-51389575 | None:intergenic | 25.0% |
| ! | TAGCTAATAAAGTAACAACT+TGG | - | chr4_1:51389626-51389645 | Msa0554140:intron | 25.0% |
| !! | TATGAAAATTAGGTTGTGTT+TGG | + | chr4_1:51389701-51389720 | None:intergenic | 25.0% |
| ! | AAATAGTGAATATGTGATAG+CGG | - | chr4_1:51389755-51389774 | Msa0554140:intron | 25.0% |
| !!! | GTTTTTCAATTAAGATTGCA+TGG | - | chr4_1:51389882-51389901 | Msa0554140:intron | 25.0% |
| !! | TTATCTTTACTAGCTTATAG+CGG | + | chr4_1:51389979-51389998 | None:intergenic | 25.0% |
| ! | GTGATAGAAAACTTACAAAT+AGG | + | chr4_1:51390386-51390405 | None:intergenic | 25.0% |
| ! | AAGTCAGATAAAAGATAAGT+AGG | + | chr4_1:51390549-51390568 | None:intergenic | 25.0% |
| !!! | GAATATGCGTTTTGATATAA+AGG | - | chr4_1:51390640-51390659 | Msa0554140:intron | 25.0% |
| !! | TTTTGATATAAAGGAATGCA+AGG | - | chr4_1:51390649-51390668 | Msa0554140:intron | 25.0% |
| !!! | GTTTTGTTAGTTTTATGTTG+GGG | - | chr4_1:51390720-51390739 | Msa0554140:CDS | 25.0% |
| !!! | TTTTGTTAGTTTTATGTTGG+GGG | - | chr4_1:51390721-51390740 | Msa0554140:CDS | 25.0% |
| ! | TTTAAATAACTTTGCCTAAG+AGG | - | chr4_1:51390867-51390886 | Msa0554140:intron | 25.0% |
| ! | AGCATCATAAAATTATTGGT+TGG | - | chr4_1:51391212-51391231 | Msa0554140:intron | 25.0% |
| !! | GCATCATAAAATTATTGGTT+GGG | - | chr4_1:51391213-51391232 | Msa0554140:intron | 25.0% |
| !! | TCATTTAGCAATTATTGGTT+AGG | - | chr4_1:51391264-51391283 | Msa0554140:intron | 25.0% |
| !! | TCATTTAGCATTATGTTTTC+AGG | - | chr4_1:51391317-51391336 | Msa0554140:intron | 25.0% |
| !! | TGAATATCTAGAGTTTGTTT+AGG | + | chr4_1:51391397-51391416 | None:intergenic | 25.0% |
| !! | TACTTTTACATATCTTCCTT+AGG | - | chr4_1:51391432-51391451 | Msa0554140:intron | 25.0% |
| !! | AATATCATTTTCAAAGCTAG+CGG | - | chr4_1:51391471-51391490 | Msa0554140:intron | 25.0% |
| !!! | TTCTGTTTAGTATTTGCTAT+TGG | - | chr4_1:51391695-51391714 | Msa0554140:intron | 25.0% |
| !!! | GTATTTGCTATTGGTAATAT+TGG | - | chr4_1:51391704-51391723 | Msa0554140:intron | 25.0% |
| ! | TATTGATGTTCAGTAAGAAT+GGG | + | chr4_1:51391772-51391791 | None:intergenic | 25.0% |
| ! | TTATTGATGTTCAGTAAGAA+TGG | + | chr4_1:51391773-51391792 | None:intergenic | 25.0% |
| !!! | GCTTACTTTTTAGTTTTCTT+TGG | - | chr4_1:51391908-51391927 | Msa0554140:intron | 25.0% |
| ! | CATAAAATTGTTCAAATCAC+TGG | + | chr4_1:51392022-51392041 | None:intergenic | 25.0% |
| ! | ATATAAGGATTTAAATTGGC+AGG | - | chr4_1:51392084-51392103 | Msa0554140:intron | 25.0% |
| ! | TATAAGGATTTAAATTGGCA+GGG | - | chr4_1:51392085-51392104 | Msa0554140:intron | 25.0% |
| ! | TTCCTGCAAATTTAAGAAAA+GGG | + | chr4_1:51392206-51392225 | None:intergenic | 25.0% |
| ! | ATTCCTGCAAATTTAAGAAA+AGG | + | chr4_1:51392207-51392226 | None:intergenic | 25.0% |
| !! | ATCATGTCCTATATTTTCTA+AGG | + | chr4_1:51392284-51392303 | None:intergenic | 25.0% |
| !!! | ACCCTTTATTTTATCTTAAC+TGG | + | chr4_1:51392350-51392369 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAACTTAAA+AGG | + | chr4_1:51392405-51392424 | None:intergenic | 25.0% |
| ! | AAACAAATTTGAATTGAGGA+GGG | + | chr4_1:51392481-51392500 | None:intergenic | 25.0% |
| ! | TAAACAAATTTGAATTGAGG+AGG | + | chr4_1:51392482-51392501 | None:intergenic | 25.0% |
| ! | TCGTTCAAAAATTTAAGAGT+TGG | - | chr4_1:51392733-51392752 | Msa0554140:intron | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | - | chr4_1:51392854-51392873 | Msa0554140:CDS | 25.0% |
| !! | TAGAAGTTCCCAATTTTATA+GGG | - | chr4_1:51392855-51392874 | Msa0554140:CDS | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | + | chr4_1:51392866-51392885 | None:intergenic | 25.0% |
| ! | GTGTAAAAATCTAATCACAA+AGG | - | chr4_1:51393063-51393082 | Msa0554140:intron | 25.0% |
| !!! | TTTTATTTCCGTATCTGTAT+CGG | + | chr4_1:51393295-51393314 | None:intergenic | 25.0% |
| ! | ATACAGATACGGAAATAAAA+TGG | - | chr4_1:51393295-51393314 | Msa0554140:intron | 25.0% |
| ! | GAAGATATAATCTTCCTTAA+GGG | + | chr4_1:51393346-51393365 | None:intergenic | 25.0% |
| ! | AGAAGATATAATCTTCCTTA+AGG | + | chr4_1:51393347-51393366 | None:intergenic | 25.0% |
| ! | TTTGTCTAGTGTAATTCTAT+TGG | + | chr4_1:51393410-51393429 | None:intergenic | 25.0% |
| !! | GAAAAAAGATGCCTTTTTAT+CGG | - | chr4_1:51393489-51393508 | Msa0554140:intron | 25.0% |
| !! | AAAAAAGATGCCTTTTTATC+GGG | - | chr4_1:51393490-51393509 | Msa0554140:intron | 25.0% |
| !!! | TGTTTGGATTAGTTTATTTG+AGG | + | chr4_1:51393974-51393993 | None:intergenic | 25.0% |
| ! | ATAGAAGTAAAGAAATAGCT+AGG | - | chr4_1:51394031-51394050 | Msa0554140:CDS | 25.0% |
| ! | TAGAAGTAAAGAAATAGCTA+GGG | - | chr4_1:51394032-51394051 | Msa0554140:CDS | 25.0% |
| !!! | TCTGTCTTCATATTTTTTGA+AGG | - | chr4_1:51394101-51394120 | Msa0554140:intron | 25.0% |
| !!! | GTTCAGTTTTCATTTTTTGA+AGG | - | chr4_1:51394252-51394271 | Msa0554140:intron | 25.0% |
| ! | TTATTTATCATGTTTCTTCC+GGG | - | chr4_1:51394372-51394391 | Msa0554140:intron | 25.0% |
| ! | TGAAATATGATACACATATC+AGG | + | chr4_1:51394418-51394437 | None:intergenic | 25.0% |
| !!! | TCTTCATTAACCATTGATTT+GGG | - | chr4_1:51394659-51394678 | Msa0554140:intron | 25.0% |
| ! | TGGCAAAATTTGAATATCTT+CGG | - | chr4_1:51395218-51395237 | Msa0554140:CDS | 25.0% |
| ! | ATCTTCGGTTATAATGTAAA+AGG | - | chr4_1:51395233-51395252 | Msa0554140:CDS | 25.0% |
| ! | TCTTCGGTTATAATGTAAAA+GGG | - | chr4_1:51395234-51395253 | Msa0554140:CDS | 25.0% |
| TGATATGAATGAGATAGAGT+TGG | - | chr4_1:51388959-51388978 | Msa0554140:three_prime_UTR | 30.0% | |
| TAAGGAATTCATGGTGAATT+AGG | + | chr4_1:51389108-51389127 | None:intergenic | 30.0% | |
| TAGAAGAGATGAAGAGAAAA+TGG | + | chr4_1:51389214-51389233 | None:intergenic | 30.0% | |
| GAACAAGATGAAATGAATTG+GGG | + | chr4_1:51389248-51389267 | None:intergenic | 30.0% | |
| GGAACAAGATGAAATGAATT+GGG | + | chr4_1:51389249-51389268 | None:intergenic | 30.0% | |
| AGGAACAAGATGAAATGAAT+TGG | + | chr4_1:51389250-51389269 | None:intergenic | 30.0% | |
| ATTTCATCTTGTTCCTCTAA+TGG | - | chr4_1:51389254-51389273 | Msa0554140:three_prime_UTR | 30.0% | |
| GTTAAGCTTAGGAGAATTAA+AGG | + | chr4_1:51389360-51389379 | None:intergenic | 30.0% | |
| ATAAACTCCTATTGTAGCTT+AGG | - | chr4_1:51389546-51389565 | Msa0554140:intron | 30.0% | |
| CTAATTGAAATTGCAGTGTT+TGG | - | chr4_1:51389787-51389806 | Msa0554140:intron | 30.0% | |
| ATTTGACTAAAAGCTCTGTT+TGG | + | chr4_1:51390030-51390049 | None:intergenic | 30.0% | |
| AGAAAACTTACAAATAGGGT+GGG | + | chr4_1:51390381-51390400 | None:intergenic | 30.0% | |
| TAGAAAACTTACAAATAGGG+TGG | + | chr4_1:51390382-51390401 | None:intergenic | 30.0% | |
| !! | TTTATAGCTTTGTGACGTAT+TGG | - | chr4_1:51390493-51390512 | Msa0554140:intron | 30.0% |
| ! | CAAAACGCATATTCAACTTT+TGG | + | chr4_1:51390634-51390653 | None:intergenic | 30.0% |
| CAAAATTGAAAATGACTGAG+CGG | + | chr4_1:51390983-51391002 | None:intergenic | 30.0% | |
| GTGATATATGTCTCAAAAAG+AGG | + | chr4_1:51391019-51391038 | None:intergenic | 30.0% | |
| ATTCTGTACGAATTTGAACT+TGG | - | chr4_1:51391151-51391170 | Msa0554140:CDS | 30.0% | |
| !! | ATAAATGGGTATAGCCTTAT+AGG | + | chr4_1:51391182-51391201 | None:intergenic | 30.0% |
| CACTAGAATTGAGTGATTTA+AGG | - | chr4_1:51391566-51391585 | Msa0554140:intron | 30.0% | |
| TGTGGTTTCTTGTAAAACTA+TGG | + | chr4_1:51391744-51391763 | None:intergenic | 30.0% | |
| GAACATCAATAAAACAGAAG+TGG | - | chr4_1:51391781-51391800 | Msa0554140:intron | 30.0% | |
| TACTTGCATGTGTATCAAAA+TGG | - | chr4_1:51391815-51391834 | Msa0554140:intron | 30.0% | |
| AACAGATAGACAAGGATATA+AGG | - | chr4_1:51392069-51392088 | Msa0554140:intron | 30.0% | |
| ! | TTCCCTTTTCTTAAATTTGC+AGG | - | chr4_1:51392201-51392220 | Msa0554140:intron | 30.0% |
| !!! | TTTACGACAATTTTTTGCAG+AGG | + | chr4_1:51392573-51392592 | None:intergenic | 30.0% |
| !! | TAAACAAGCTTTGTTGTATC+AGG | - | chr4_1:51392761-51392780 | Msa0554140:intron | 30.0% |
| !! | AAACAAGCTTTGTTGTATCA+GGG | - | chr4_1:51392762-51392781 | Msa0554140:intron | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr4_1:51392867-51392886 | None:intergenic | 30.0% |
| TTGTGACATTGGAAAAATAG+AGG | - | chr4_1:51393029-51393048 | Msa0554140:intron | 30.0% | |
| ATACCTTTCGGATGTATTAT+TGG | - | chr4_1:51393254-51393273 | Msa0554140:intron | 30.0% | |
| TCTATCCACATTGCATATAT+GGG | - | chr4_1:51393535-51393554 | Msa0554140:intron | 30.0% | |
| ATTTACCCATATATGCAATG+TGG | + | chr4_1:51393543-51393562 | None:intergenic | 30.0% | |
| TTATTGTTTGACAATTAGCC+AGG | - | chr4_1:51393573-51393592 | Msa0554140:intron | 30.0% | |
| !!! | AGCTTTTTCATAAGCTATCT+TGG | - | chr4_1:51393857-51393876 | Msa0554140:intron | 30.0% |
| GATTTCTCTTAGAAGTCAAT+TGG | - | chr4_1:51394126-51394145 | Msa0554140:intron | 30.0% | |
| GATTTCTGTTAGAACTGAAT+TGG | - | chr4_1:51394277-51394296 | Msa0554140:intron | 30.0% | |
| AGAATCTGTTAAAATGTTCC+CGG | + | chr4_1:51394393-51394412 | None:intergenic | 30.0% | |
| ! | GTCTTCATTAACCATTGATT+TGG | - | chr4_1:51394658-51394677 | Msa0554140:intron | 30.0% |
| CAACTCTAGTATATGTTGTA+GGG | + | chr4_1:51394720-51394739 | None:intergenic | 30.0% | |
| ACAACTCTAGTATATGTTGT+AGG | + | chr4_1:51394721-51394740 | None:intergenic | 30.0% | |
| ACAACATATACTAGAGTTGT+TGG | - | chr4_1:51394721-51394740 | Msa0554140:intron | 30.0% | |
| !! | GTTAAAATCTCGTTTTTAGG+AGG | + | chr4_1:51394774-51394793 | None:intergenic | 30.0% |
| !! | GTGGTTAAAATCTCGTTTTT+AGG | + | chr4_1:51394777-51394796 | None:intergenic | 30.0% |
| GTCATTAGATATTCATCCAA+CGG | - | chr4_1:51394812-51394831 | Msa0554140:intron | 30.0% | |
| TAATGTGTCCTAATATAGTG+TGG | - | chr4_1:51395177-51395196 | Msa0554140:CDS | 30.0% | |
| AATGTGTCCTAATATAGTGT+GGG | - | chr4_1:51395178-51395197 | Msa0554140:CDS | 30.0% | |
| ACTAGATTACAATGAGAAGA+GGG | + | chr4_1:51395371-51395390 | None:intergenic | 30.0% | |
| TACTAGATTACAATGAGAAG+AGG | + | chr4_1:51395372-51395391 | None:intergenic | 30.0% | |
| TATGAATGAGATAGAGTTGG+AGG | - | chr4_1:51388962-51388981 | Msa0554140:three_prime_UTR | 35.0% | |
| TCAGCTGAAACGAGTTAAAT+CGG | - | chr4_1:51389056-51389075 | Msa0554140:three_prime_UTR | 35.0% | |
| AGAAGTGAGTAAGGAATTCA+TGG | + | chr4_1:51389117-51389136 | None:intergenic | 35.0% | |
| ACGTAATGAAGAAGTGAGTA+AGG | + | chr4_1:51389126-51389145 | None:intergenic | 35.0% | |
| TTGTTGTAGTTGAAGTGTGT+GGG | + | chr4_1:51389154-51389173 | None:intergenic | 35.0% | |
| AACTTCATCTGAAGAATTGC+TGG | + | chr4_1:51389282-51389301 | None:intergenic | 35.0% | |
| GAATTAAAGGAAGGAACTTG+AGG | + | chr4_1:51389347-51389366 | None:intergenic | 35.0% | |
| AGCTTAGGAGAATTAAAGGA+AGG | + | chr4_1:51389356-51389375 | None:intergenic | 35.0% | |
| TGATCACTGAAGTTAAGCTT+AGG | + | chr4_1:51389371-51389390 | None:intergenic | 35.0% | |
| GTGTTTGGATAAACTCAAAC+AGG | + | chr4_1:51389686-51389705 | None:intergenic | 35.0% | |
| AGCTTATAGCTTAAAGCTCA+TGG | + | chr4_1:51389934-51389953 | None:intergenic | 35.0% | |
| ACCAAATAGGATGAAGACAA+GGG | + | chr4_1:51390802-51390821 | None:intergenic | 35.0% | |
| TACCAAATAGGATGAAGACA+AGG | + | chr4_1:51390803-51390822 | None:intergenic | 35.0% | |
| TTTGGACAGATGTACCAAAT+AGG | + | chr4_1:51390815-51390834 | None:intergenic | 35.0% | |
| AGTGAGTTAAACACTGAGAA+AGG | - | chr4_1:51390902-51390921 | Msa0554140:intron | 35.0% | |
| GTGAGTTAAACACTGAGAAA+GGG | - | chr4_1:51390903-51390922 | Msa0554140:intron | 35.0% | |
| !! | ACAATTTAGAGAAGAGTGCT+AGG | - | chr4_1:51390951-51390970 | Msa0554140:intron | 35.0% |
| AGTGTCAAATATCCTGTATG+CGG | - | chr4_1:51391064-51391083 | Msa0554140:CDS | 35.0% | |
| TGAACTTGGCTATTCCTATA+AGG | - | chr4_1:51391165-51391184 | Msa0554140:intron | 35.0% | |
| !! | TCTAGTTCTGTGCTTTGTAT+TGG | - | chr4_1:51391850-51391869 | Msa0554140:intron | 35.0% |
| ! | TTAGAAGCATGTATGGTCAA+CGG | + | chr4_1:51391938-51391957 | None:intergenic | 35.0% |
| ! | CTAGAAGTTAGAAGCATGTA+TGG | + | chr4_1:51391945-51391964 | None:intergenic | 35.0% |
| !! | TCACTGGCATTTTAGTACTA+TGG | + | chr4_1:51392006-51392025 | None:intergenic | 35.0% |
| TGTCTAGAAACAGATAGACA+AGG | - | chr4_1:51392061-51392080 | Msa0554140:intron | 35.0% | |
| ATTGTGTTAAAGTATGAGCC+AGG | - | chr4_1:51392121-51392140 | Msa0554140:intron | 35.0% | |
| TTGTGTTAAAGTATGAGCCA+GGG | - | chr4_1:51392122-51392141 | Msa0554140:intron | 35.0% | |
| TGCGGTTCCTTAGAAAATAT+AGG | - | chr4_1:51392274-51392293 | Msa0554140:intron | 35.0% | |
| ATATAGGACATGATGCGTTT+AGG | - | chr4_1:51392290-51392309 | Msa0554140:intron | 35.0% | |
| ! | CACGTTTAGAACACTATGAA+AGG | + | chr4_1:51392702-51392721 | None:intergenic | 35.0% |
| GACATTGGAAAAATAGAGGT+TGG | - | chr4_1:51393033-51393052 | Msa0554140:intron | 35.0% | |
| AAATCTAATCACAAAGGCTG+TGG | - | chr4_1:51393069-51393088 | Msa0554140:intron | 35.0% | |
| AATCTAATCACAAAGGCTGT+GGG | - | chr4_1:51393070-51393089 | Msa0554140:intron | 35.0% | |
| ! | TGTTTTCAAACAGATGCATC+CGG | - | chr4_1:51393224-51393243 | Msa0554140:intron | 35.0% |
| !! | TAATACATCCGAAAGGTATC+CGG | + | chr4_1:51393253-51393272 | None:intergenic | 35.0% |
| ATGCCAATAATACATCCGAA+AGG | + | chr4_1:51393260-51393279 | None:intergenic | 35.0% | |
| ! | TGCTGCTACGTACAATATTT+TGG | - | chr4_1:51393378-51393397 | Msa0554140:intron | 35.0% |
| CTCTATCCACATTGCATATA+TGG | - | chr4_1:51393534-51393553 | Msa0554140:intron | 35.0% | |
| ATTAGCCAGGAAATAACAGA+AGG | - | chr4_1:51393586-51393605 | Msa0554140:intron | 35.0% | |
| !! | TGATTCCTTCTGTTATTTCC+TGG | + | chr4_1:51393594-51393613 | None:intergenic | 35.0% |
| GAAACTGGAATTCGACATAT+CGG | - | chr4_1:51393643-51393662 | Msa0554140:intron | 35.0% | |
| ! | GATTTATTCCTTTAGTGGGT+TGG | - | chr4_1:51394073-51394092 | Msa0554140:intron | 35.0% |
| GAATTTATTGATGTGGCTAG+AGG | + | chr4_1:51394518-51394537 | None:intergenic | 35.0% | |
| AATAATCAGACCAACAGTAG+AGG | + | chr4_1:51394917-51394936 | None:intergenic | 35.0% | |
| AACAGGTTGCAGAGATATTT+CGG | + | chr4_1:51394983-51395002 | None:intergenic | 35.0% | |
| AGCTTGATGAACATGATTTC+AGG | - | chr4_1:51395054-51395073 | Msa0554140:CDS | 35.0% | |
| TGATGAACATGATTTCAGGA+AGG | - | chr4_1:51395058-51395077 | Msa0554140:CDS | 35.0% | |
| GATGAACATGATTTCAGGAA+GGG | - | chr4_1:51395059-51395078 | Msa0554140:CDS | 35.0% | |
| ATACCTTCCCACACTATATT+AGG | + | chr4_1:51395188-51395207 | None:intergenic | 35.0% | |
| !! | GGGAAGGTATTGAAAAGTAA+TGG | - | chr4_1:51395198-51395217 | Msa0554140:CDS | 35.0% |
| GTGTCTTAATACTGTGAGAA+TGG | - | chr4_1:51395273-51395292 | Msa0554140:CDS | 35.0% | |
| TGAGTATAACAGTAACCTAC+AGG | - | chr4_1:51395323-51395342 | Msa0554140:five_prime_UTR | 35.0% | |
| ! | AAAAATAGCTTGTAGCCTGT+AGG | + | chr4_1:51395341-51395360 | None:intergenic | 35.0% |
| GTTGTTGTAGTTGAAGTGTG+TGG | + | chr4_1:51389155-51389174 | None:intergenic | 40.0% | |
| AGAATTGCTGGATCCATTAG+AGG | + | chr4_1:51389270-51389289 | None:intergenic | 40.0% | |
| TTACTTAGGCTCTGTCTGTT+TGG | - | chr4_1:51389728-51389747 | Msa0554140:intron | 40.0% | |
| TGATAACCACCTACACAACA+GGG | + | chr4_1:51390105-51390124 | None:intergenic | 40.0% | |
| ATGATAACCACCTACACAAC+AGG | + | chr4_1:51390106-51390125 | None:intergenic | 40.0% | |
| ACTTACAAATAGGGTGGGAA+CGG | + | chr4_1:51390376-51390395 | None:intergenic | 40.0% | |
| ! | ACTTTTGGCAGTGTATTTGC+AGG | + | chr4_1:51390619-51390638 | None:intergenic | 40.0% |
| !!! | TGTTAGTTTTATGTTGGGGG+TGG | - | chr4_1:51390724-51390743 | Msa0554140:CDS | 40.0% |
| AAATAGGATGAAGACAAGGG+TGG | + | chr4_1:51390799-51390818 | None:intergenic | 40.0% | |
| ACCCTTGTCTTCATCCTATT+TGG | - | chr4_1:51390798-51390817 | Msa0554140:intron | 40.0% | |
| !!! | TTTTTTCTTGGAGGGAGCAT+TGG | - | chr4_1:51390842-51390861 | Msa0554140:intron | 40.0% |
| CTCATCACATAACACCTCTT+AGG | + | chr4_1:51390884-51390903 | None:intergenic | 40.0% | |
| CGACAGATTCATTCAAAGCA+AGG | + | chr4_1:51391604-51391623 | None:intergenic | 40.0% | |
| !! | TGTGCTTTGTATTGGTTGCT+GGG | - | chr4_1:51391858-51391877 | Msa0554140:intron | 40.0% |
| GGATTTAAATTGGCAGGGTT+TGG | - | chr4_1:51392090-51392109 | Msa0554140:intron | 40.0% | |
| TGTGTTAAAGTATGAGCCAG+GGG | - | chr4_1:51392123-51392142 | Msa0554140:intron | 40.0% | |
| ! | GTATCGTATTGGTGCATCAT+AGG | + | chr4_1:51392234-51392253 | None:intergenic | 40.0% |
| CACCAATACGATACGAGTAT+CGG | - | chr4_1:51392240-51392259 | Msa0554140:intron | 40.0% | |
| ATCCGATACTCGTATCGTAT+TGG | + | chr4_1:51392245-51392264 | None:intergenic | 40.0% | |
| GTATCGGATACATCGATATG+CGG | - | chr4_1:51392256-51392275 | Msa0554140:intron | 40.0% | |
| GAAGAAGGTTCTTGTGACAT+TGG | - | chr4_1:51393018-51393037 | Msa0554140:intron | 40.0% | |
| AACGAAGCAGATAGCCATTT+AGG | - | chr4_1:51393132-51393151 | Msa0554140:intron | 40.0% | |
| GTATCTGTATCGGATACGTT+GGG | + | chr4_1:51393285-51393304 | None:intergenic | 40.0% | |
| CAACGTATCCGATACAGATA+CGG | - | chr4_1:51393284-51393303 | Msa0554140:intron | 40.0% | |
| CATCAGAGATTTAGCCCTTA+AGG | - | chr4_1:51393329-51393348 | Msa0554140:intron | 40.0% | |
| !! | AATTCGACATATCGGTTCAG+TGG | - | chr4_1:51393651-51393670 | Msa0554140:intron | 40.0% |
| TAAATGCTTCAGAGCGTGTT+TGG | + | chr4_1:51393990-51394009 | None:intergenic | 40.0% | |
| GAAATAGCTAGGGAAAACCT+TGG | - | chr4_1:51394042-51394061 | Msa0554140:CDS | 40.0% | |
| !! | GCTAGAGGTTGATGTTTGAA+TGG | + | chr4_1:51394503-51394522 | None:intergenic | 40.0% |
| TGACTCACATTCTAAGCATG+TGG | + | chr4_1:51394796-51394815 | None:intergenic | 40.0% | |
| AGTAACGAGATCAATACCGT+TGG | + | chr4_1:51394831-51394850 | None:intergenic | 40.0% | |
| TATTGATCTCGTTACTGCAG+TGG | - | chr4_1:51394835-51394854 | Msa0554140:intron | 40.0% | |
| CAATCTGTGTATCTGGGAAT+TGG | + | chr4_1:51394871-51394890 | None:intergenic | 40.0% | |
| GACAGTCAATCTGTGTATCT+GGG | + | chr4_1:51394877-51394896 | None:intergenic | 40.0% | |
| AGAGGATAGACAAGATTGCT+CGG | + | chr4_1:51394899-51394918 | None:intergenic | 40.0% | |
| TCTTGTCTATCCTCTACTGT+TGG | - | chr4_1:51394904-51394923 | Msa0554140:intron | 40.0% | |
| ATTCGCTCTCTCTTCAATCA+TGG | + | chr4_1:51394956-51394975 | None:intergenic | 40.0% | |
| ACAGGTTGCAGAGATATTTC+GGG | + | chr4_1:51394982-51395001 | None:intergenic | 40.0% | |
| !! | AGAAAGACTTCTAGAGCAGT+TGG | - | chr4_1:51395018-51395037 | Msa0554140:CDS | 40.0% |
| TCATCAAGCTCTTTGTTGCT+CGG | + | chr4_1:51395044-51395063 | None:intergenic | 40.0% | |
| TGTCCTAATATAGTGTGGGA+AGG | - | chr4_1:51395182-51395201 | Msa0554140:CDS | 40.0% | |
| ! | GCTACATAAAAGAAGTGCAG+TGG | - | chr4_1:51395295-51395314 | Msa0554140:five_prime_UTR | 40.0% |
| TCTCGCATTCATTGCTTGCA+CGG | - | chr4_1:51389403-51389422 | Msa0554140:CDS | 45.0% | |
| GATAACCACCTACACAACAG+GGG | + | chr4_1:51390104-51390123 | None:intergenic | 45.0% | |
| ATTGTCTCTGCAGACTTCAG+TGG | - | chr4_1:51390326-51390345 | Msa0554140:intron | 45.0% | |
| !! | TTAGAGAAGAGTGCTAGGCT+CGG | - | chr4_1:51390956-51390975 | Msa0554140:intron | 45.0% |
| GTCAAATATCCTGTATGCGG+TGG | - | chr4_1:51391067-51391086 | Msa0554140:CDS | 45.0% | |
| GATCAATTTCCACCGCATAC+AGG | + | chr4_1:51391079-51391098 | None:intergenic | 45.0% | |
| GCAGCATTTCTCATTGCCTA+AGG | + | chr4_1:51391451-51391470 | None:intergenic | 45.0% | |
| !! | CAGTAAGAATGGGTTGAGTG+TGG | + | chr4_1:51391762-51391781 | None:intergenic | 45.0% |
| !! | CTGTGCTTTGTATTGGTTGC+TGG | - | chr4_1:51391857-51391876 | Msa0554140:intron | 45.0% |
| CCAGGGGATACAATGATACA+GGG | - | chr4_1:51392139-51392158 | Msa0554140:CDS | 45.0% | |
| GGTTCAAAACGCATGAGACT+TGG | - | chr4_1:51393091-51393110 | Msa0554140:intron | 45.0% | |
| ! | AAAACGCATGAGACTTGGTC+TGG | - | chr4_1:51393096-51393115 | Msa0554140:intron | 45.0% |
| TTGAGGAGACGCAACCTAAA+TGG | + | chr4_1:51393149-51393168 | None:intergenic | 45.0% | |
| CTCTGATACGCCAAAACTTG+AGG | + | chr4_1:51393166-51393185 | None:intergenic | 45.0% | |
| AAACAGATGCATCCGGAATC+CGG | - | chr4_1:51393231-51393250 | Msa0554140:intron | 45.0% | |
| CGTATCTGTATCGGATACGT+TGG | + | chr4_1:51393286-51393305 | None:intergenic | 45.0% | |
| TGTACGTAGCAGCAAGAAAC+AGG | + | chr4_1:51393372-51393391 | None:intergenic | 45.0% | |
| AGAACGTTCCAACCCACTAA+AGG | + | chr4_1:51394084-51394103 | None:intergenic | 45.0% | |
| CTGCAGTGAACCCAAATCAA+TGG | + | chr4_1:51394672-51394691 | None:intergenic | 45.0% | |
| GGACAGTCAATCTGTGTATC+TGG | + | chr4_1:51394878-51394897 | None:intergenic | 45.0% | |
| TCTCTGCAACCTGTTGTTGT+AGG | - | chr4_1:51394988-51395007 | Msa0554140:CDS | 45.0% | |
| !!! | TTTTCAATATATTTATTTTA+GGG | + | chr4_1:51392898-51392917 | None:intergenic | 5.0% |
| !!! | TTTTTCAATATATTTATTTT+AGG | + | chr4_1:51392899-51392918 | None:intergenic | 5.0% |
| CTACACAACAGGGGTCTGTT+TGG | + | chr4_1:51390095-51390114 | None:intergenic | 50.0% | |
| CAAACAGACCCCTGTTGTGT+AGG | - | chr4_1:51390093-51390112 | Msa0554140:intron | 50.0% | |
| CAGACTTCAGTGGCATTCAC+TGG | - | chr4_1:51390336-51390355 | Msa0554140:intron | 50.0% | |
| TGGGAACGGCAGCAAAAACA+AGG | + | chr4_1:51390362-51390381 | None:intergenic | 50.0% | |
| !! | ACAAGGGTGGTTTGGTGGTT+GGG | + | chr4_1:51390786-51390805 | None:intergenic | 50.0% |
| ! | TGAAGACAAGGGTGGTTTGG+TGG | + | chr4_1:51390791-51390810 | None:intergenic | 50.0% |
| GGATGAAGACAAGGGTGGTT+TGG | + | chr4_1:51390794-51390813 | None:intergenic | 50.0% | |
| TGAAAGCCTCATAGCAGCCA+TGG | + | chr4_1:51391524-51391543 | None:intergenic | 50.0% | |
| ATGGCTGCTATGAGGCTTTC+AGG | - | chr4_1:51391523-51391542 | Msa0554140:intron | 50.0% | |
| TGGCTGCTATGAGGCTTTCA+GGG | - | chr4_1:51391524-51391543 | Msa0554140:intron | 50.0% | |
| TGCTATGAGGCTTTCAGGGA+TGG | - | chr4_1:51391528-51391547 | Msa0554140:intron | 50.0% | |
| !! | GCTTTGTATTGGTTGCTGGG+AGG | - | chr4_1:51391861-51391880 | Msa0554140:intron | 50.0% |
| GCCAGGGGATACAATGATAC+AGG | - | chr4_1:51392138-51392157 | Msa0554140:CDS | 50.0% | |
| CCCTGTATCATTGTATCCCC+TGG | + | chr4_1:51392142-51392161 | None:intergenic | 50.0% | |
| ! | GGTTGCGTCTCCTCAAGTTT+TGG | - | chr4_1:51393153-51393172 | Msa0554140:intron | 50.0% |
| TCCGGAATCCGGATACCTTT+CGG | - | chr4_1:51393242-51393261 | Msa0554140:intron | 50.0% | |
| !! | TCCGAAAGGTATCCGGATTC+CGG | + | chr4_1:51393246-51393265 | None:intergenic | 50.0% |
| GCTTTGCAAGCAGCAGAAAC+TGG | - | chr4_1:51393628-51393647 | Msa0554140:intron | 50.0% | |
| CTTGCAGCTCCTACAACAAC+AGG | + | chr4_1:51395000-51395019 | None:intergenic | 50.0% | |
| ACAGACCCCTGTTGTGTAGG+TGG | - | chr4_1:51390096-51390115 | Msa0554140:intron | 55.0% | |
| !! | CAAGGGTGGTTTGGTGGTTG+GGG | + | chr4_1:51390785-51390804 | None:intergenic | 55.0% |
| !! | GACAAGGGTGGTTTGGTGGT+TGG | + | chr4_1:51390787-51390806 | None:intergenic | 55.0% |
| TGAGGAACTACCGAGCACCA+TGG | - | chr4_1:51391504-51391523 | Msa0554140:intron | 55.0% | |
| CTCATAGCAGCCATGGTGCT+CGG | + | chr4_1:51391517-51391536 | None:intergenic | 55.0% | |
| GGGGTGGGGGAGTTAAAGAG+TGG | + | chr4_1:51390766-51390785 | None:intergenic | 60.0% | |
| !! | TGGTTTGGTGGTTGGGGTGG+GGG | + | chr4_1:51390779-51390798 | None:intergenic | 60.0% |
| !! | GTGGTTTGGTGGTTGGGGTG+GGG | + | chr4_1:51390780-51390799 | None:intergenic | 60.0% |
| !! | GGTGGTTTGGTGGTTGGGGT+GGG | + | chr4_1:51390781-51390800 | None:intergenic | 60.0% |
| ! | GCTAGCGGATACAGCTCGTG+AGG | - | chr4_1:51391486-51391505 | Msa0554140:intron | 60.0% |
| CGAGCACCATGGCTGCTATG+AGG | - | chr4_1:51391515-51391534 | Msa0554140:intron | 60.0% | |
| !! | GGGTGGTTTGGTGGTTGGGG+TGG | + | chr4_1:51390782-51390801 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51388955 | 51395453 | 51388955 | ID=Msa0554140;Name=Msa0554140 |
| chr4_1 | mRNA | 51388955 | 51395453 | 51388955 | ID=Msa0554140-mRNA-1;Parent=Msa0554140;Name=Msa0554140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=161|0.5|0.57|0.71|1|1|7|331|316 |
| chr4_1 | exon | 51388955 | 51389455 | 51388955 | ID=Msa0554140-mRNA-1:exon:14709;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51390717 | 51390813 | 51390717 | ID=Msa0554140-mRNA-1:exon:14708;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51391037 | 51391171 | 51391037 | ID=Msa0554140-mRNA-1:exon:14707;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51392131 | 51392185 | 51392131 | ID=Msa0554140-mRNA-1:exon:14706;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51392821 | 51392954 | 51392821 | ID=Msa0554140-mRNA-1:exon:14705;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51394019 | 51394069 | 51394019 | ID=Msa0554140-mRNA-1:exon:14704;Parent=Msa0554140-mRNA-1 |
| chr4_1 | exon | 51394984 | 51395453 | 51394984 | ID=Msa0554140-mRNA-1:exon:14703;Parent=Msa0554140-mRNA-1 |
| chr4_1 | five_prime_UTR | 51395293 | 51395453 | 51395293 | ID=Msa0554140-mRNA-1:five_prime_utr;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51394984 | 51395292 | 51394984 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51394019 | 51394069 | 51394019 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51392821 | 51392954 | 51392821 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51392131 | 51392185 | 51392131 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51391037 | 51391171 | 51391037 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51390717 | 51390813 | 51390717 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | CDS | 51389286 | 51389455 | 51389286 | ID=Msa0554140-mRNA-1:cds;Parent=Msa0554140-mRNA-1 |
| chr4_1 | three_prime_UTR | 51388955 | 51389285 | 51388955 | ID=Msa0554140-mRNA-1:three_prime_utr;Parent=Msa0554140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
