Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793810 | XP_024640114.1 | 92.063 | 63 | 5 | 0 | 54 | 116 | 491 | 553 | 2.29e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793810 | G7K3R0 | 92.063 | 63 | 5 | 0 | 54 | 116 | 491 | 553 | 1.09e-28 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0793810 | 0.828478 | 8.793258e-55 | -8.615850e-47 |
| Msa0011170 | Msa0793810 | 0.801335 | 9.454087e-49 | -8.615850e-47 |
| Msa0011960 | Msa0793810 | 0.801996 | 6.918201e-49 | -8.615850e-47 |
| Msa0013050 | Msa0793810 | -0.800520 | 1.386494e-48 | -8.615850e-47 |
| Msa0029270 | Msa0793810 | 0.822499 | 2.293083e-53 | -8.615850e-47 |
| Msa0032090 | Msa0793810 | 0.831630 | 1.496988e-55 | -8.615850e-47 |
| Msa0032430 | Msa0793810 | 0.812322 | 4.493500e-51 | -8.615850e-47 |
| Msa0032580 | Msa0793810 | 0.819226 | 1.298096e-52 | -8.615850e-47 |
| Msa0037570 | Msa0793810 | -0.803925 | 2.761770e-49 | -8.615850e-47 |
| Msa0054480 | Msa0793810 | 0.817381 | 3.396760e-52 | -8.615850e-47 |
| Msa0068680 | Msa0793810 | 0.806113 | 9.631142e-50 | -8.615850e-47 |
| Msa0079380 | Msa0793810 | 0.828535 | 8.516472e-55 | -8.615850e-47 |
| Msa0084380 | Msa0793810 | 0.817393 | 3.375072e-52 | -8.615850e-47 |
| Msa0090360 | Msa0793810 | 0.820881 | 5.425246e-53 | -8.615850e-47 |
| Msa0112770 | Msa0793810 | 0.804423 | 2.176281e-49 | -8.615850e-47 |
| Msa0114060 | Msa0793810 | 0.814475 | 1.511542e-51 | -8.615850e-47 |
| Msa0607050 | Msa0793810 | 0.818350 | 2.052157e-52 | -8.615850e-47 |
| Msa0610430 | Msa0793810 | 0.832268 | 1.041237e-55 | -8.615850e-47 |
| Msa0616160 | Msa0793810 | 0.803027 | 4.241029e-49 | -8.615850e-47 |
| Msa0617640 | Msa0793810 | 0.847359 | 1.215719e-59 | -8.615850e-47 |
| Msa0621490 | Msa0793810 | 0.820154 | 7.969816e-53 | -8.615850e-47 |
| Msa0623790 | Msa0793810 | 0.826408 | 2.757385e-54 | -8.615850e-47 |
| Msa0625720 | Msa0793810 | 0.801625 | 8.244620e-49 | -8.615850e-47 |
| Msa0643560 | Msa0793810 | 0.830796 | 2.400379e-55 | -8.615850e-47 |
| Msa0657580 | Msa0793810 | 0.800101 | 1.687563e-48 | -8.615850e-47 |
| Msa0661190 | Msa0793810 | -0.806755 | 7.052390e-50 | -8.615850e-47 |
| Msa0662500 | Msa0793810 | 0.815211 | 1.038412e-51 | -8.615850e-47 |
| Msa0663390 | Msa0793810 | 0.820727 | 5.886521e-53 | -8.615850e-47 |
| Msa0673460 | Msa0793810 | 0.801896 | 7.252522e-49 | -8.615850e-47 |
| Msa0688960 | Msa0793810 | 0.814217 | 1.723556e-51 | -8.615850e-47 |
| Msa0689260 | Msa0793810 | 0.818185 | 2.236269e-52 | -8.615850e-47 |
| Msa0692830 | Msa0793810 | 0.817919 | 2.569056e-52 | -8.615850e-47 |
| Msa0698490 | Msa0793810 | 0.800898 | 1.161361e-48 | -8.615850e-47 |
| Msa0698660 | Msa0793810 | 0.801668 | 8.079179e-49 | -8.615850e-47 |
| Msa0711780 | Msa0793810 | 0.822747 | 2.007659e-53 | -8.615850e-47 |
| Msa0731940 | Msa0793810 | 0.801846 | 7.427507e-49 | -8.615850e-47 |
| Msa0743950 | Msa0793810 | 0.846226 | 2.480617e-59 | -8.615850e-47 |
| Msa0769920 | Msa0793810 | 0.811651 | 6.294434e-51 | -8.615850e-47 |
| Msa0788850 | Msa0793810 | 0.819523 | 1.110840e-52 | -8.615850e-47 |
| Msa0793800 | Msa0793810 | 0.817587 | 3.051856e-52 | -8.615850e-47 |
| Msa0793810 | Msa0794670 | 0.824785 | 6.688759e-54 | -8.615850e-47 |
| Msa0793810 | Msa0796530 | 0.821670 | 3.569695e-53 | -8.615850e-47 |
| Msa0793810 | Msa0808270 | 0.818536 | 1.862399e-52 | -8.615850e-47 |
| Msa0793810 | Msa0810220 | 0.809213 | 2.114244e-50 | -8.615850e-47 |
| Msa0793810 | Msa0820850 | 0.801962 | 7.028644e-49 | -8.615850e-47 |
| Msa0793810 | Msa0831520 | 0.814248 | 1.696608e-51 | -8.615850e-47 |
| Msa0793810 | Msa0849030 | 0.807894 | 4.044907e-50 | -8.615850e-47 |
| Msa0793810 | Msa0856910 | 0.803517 | 3.357044e-49 | -8.615850e-47 |
| Msa0793810 | Msa0864250 | 0.842231 | 2.934177e-58 | -8.615850e-47 |
| Msa0793810 | Msa0866550 | 0.801847 | 7.423862e-49 | -8.615850e-47 |
| Msa0793810 | Msa0938220 | 0.809189 | 2.140224e-50 | -8.615850e-47 |
| Msa0793810 | Msa0945970 | 0.827259 | 1.727308e-54 | -8.615850e-47 |
| Msa0793810 | Msa0947660 | 0.826118 | 3.233489e-54 | -8.615850e-47 |
| Msa0793810 | Msa0968590 | 0.801575 | 8.439276e-49 | -8.615850e-47 |
| Msa0793810 | Msa0969520 | 0.804326 | 2.279898e-49 | -8.615850e-47 |
| Msa0793810 | Msa0969810 | 0.814231 | 1.712177e-51 | -8.615850e-47 |
| Msa0793810 | Msa0974070 | 0.819127 | 1.367432e-52 | -8.615850e-47 |
| Msa0793810 | Msa0993290 | 0.809303 | 2.022757e-50 | -8.615850e-47 |
| Msa0793810 | Msa0993600 | 0.807567 | 4.745339e-50 | -8.615850e-47 |
| Msa0793810 | Msa0999970 | 0.827150 | 1.833789e-54 | -8.615850e-47 |
| Msa0793810 | Msa1002000 | 0.807128 | 5.881255e-50 | -8.615850e-47 |
| Msa0793810 | Msa1003620 | 0.826284 | 2.951258e-54 | -8.615850e-47 |
| Msa0793810 | Msa1014540 | 0.813904 | 2.020937e-51 | -8.615850e-47 |
| Msa0793810 | Msa1046460 | 0.812794 | 3.543226e-51 | -8.615850e-47 |
| Msa0793810 | Msa1051200 | 0.803223 | 3.862765e-49 | -8.615850e-47 |
| Msa0793810 | Msa1061680 | 0.804963 | 1.678329e-49 | -8.615850e-47 |
| Msa0793810 | Msa1075540 | 0.812086 | 5.060941e-51 | -8.615850e-47 |
| Msa0793810 | Msa1075650 | 0.807714 | 4.417022e-50 | -8.615850e-47 |
| Msa0793810 | Msa1085200 | 0.806972 | 6.344858e-50 | -8.615850e-47 |
| Msa0793810 | Msa1109680 | 0.817241 | 3.652024e-52 | -8.615850e-47 |
| Msa0793810 | Msa1121440 | 0.811943 | 5.437458e-51 | -8.615850e-47 |
| Msa0793810 | Msa1124960 | 0.800479 | 1.413836e-48 | -8.615850e-47 |
| Msa0793810 | Msa1147280 | 0.816936 | 4.277339e-52 | -8.615850e-47 |
| Msa0793810 | Msa1147900 | 0.804652 | 1.949236e-49 | -8.615850e-47 |
| Msa0793810 | Msa1160590 | 0.802446 | 5.589717e-49 | -8.615850e-47 |
| Msa0793810 | Msa1162270 | 0.820510 | 6.602189e-53 | -8.615850e-47 |
| Msa0793810 | Msa1167340 | 0.805481 | 1.307170e-49 | -8.615850e-47 |
| Msa0793810 | Msa1170410 | 0.802706 | 4.939595e-49 | -8.615850e-47 |
| Msa0793810 | Msa1181250 | 0.811745 | 6.003919e-51 | -8.615850e-47 |
| Msa0793810 | Msa1181330 | 0.812596 | 3.915139e-51 | -8.615850e-47 |
| Msa0793810 | Msa1186950 | -0.806365 | 8.524544e-50 | -8.615850e-47 |
| Msa0793810 | Msa1228590 | 0.804207 | 2.413615e-49 | -8.615850e-47 |
| Msa0793810 | Msa1252140 | 0.807171 | 5.756971e-50 | -8.615850e-47 |
| Msa0793810 | Msa1253020 | 0.815244 | 1.020752e-51 | -8.615850e-47 |
| Msa0793810 | Msa1287460 | 0.821798 | 3.333398e-53 | -8.615850e-47 |
| Msa0793810 | Msa1306840 | 0.815026 | 1.141139e-51 | -8.615850e-47 |
| Msa0793810 | Msa1348490 | 0.830432 | 2.946537e-55 | -8.615850e-47 |
| Msa0793810 | Msa1353980 | 0.808494 | 3.012751e-50 | -8.615850e-47 |
| Msa0793810 | Msa1358250 | 0.821022 | 5.036100e-53 | -8.615850e-47 |
| Msa0793810 | Msa1359040 | 0.820602 | 6.290420e-53 | -8.615850e-47 |
| Msa0793810 | Msa1370070 | -0.805411 | 1.352674e-49 | -8.615850e-47 |
| Msa0793810 | Msa1374120 | 0.802990 | 4.315184e-49 | -8.615850e-47 |
| Msa0793810 | Msa1374470 | 0.802273 | 6.066743e-49 | -8.615850e-47 |
| Msa0793810 | Msa1386780 | 0.805861 | 1.087944e-49 | -8.615850e-47 |
| Msa0793810 | Msa1392780 | 0.821934 | 3.100614e-53 | -8.615850e-47 |
| Msa0793810 | Msa1394290 | 0.803066 | 4.162052e-49 | -8.615850e-47 |
| Msa0793810 | Msa1394500 | 0.814500 | 1.492905e-51 | -8.615850e-47 |
| Msa0793810 | Msa1410100 | 0.815353 | 9.656841e-52 | -8.615850e-47 |
| Msa0793810 | Msa1412640 | 0.802234 | 6.180156e-49 | -8.615850e-47 |
| Msa0793810 | Msa1416150 | 0.821544 | 3.815930e-53 | -8.615850e-47 |
| Msa0793810 | Msa1424750 | 0.825769 | 3.913300e-54 | -8.615850e-47 |
| Msa0793810 | Msa1426030 | 0.823426 | 1.394211e-53 | -8.615850e-47 |
| Msa0793810 | Msa1433390 | 0.816129 | 6.483522e-52 | -8.615850e-47 |
| Msa0793810 | Msa1457920 | 0.814394 | 1.575901e-51 | -8.615850e-47 |
| Msa0793810 | Msa1461300 | 0.803145 | 4.009352e-49 | -8.615850e-47 |
| Msa0793810 | Msa1466540 | 0.824050 | 9.959649e-54 | -8.615850e-47 |
| Msa0127050 | Msa0793810 | 0.836148 | 1.108736e-56 | -8.615850e-47 |
| Msa0131600 | Msa0793810 | 0.804871 | 1.753954e-49 | -8.615850e-47 |
| Msa0136070 | Msa0793810 | 0.809567 | 1.774905e-50 | -8.615850e-47 |
| Msa0137840 | Msa0793810 | 0.810769 | 9.776855e-51 | -8.615850e-47 |
| Msa0150820 | Msa0793810 | 0.821340 | 4.253636e-53 | -8.615850e-47 |
| Msa0160550 | Msa0793810 | 0.814299 | 1.653733e-51 | -8.615850e-47 |
| Msa0169310 | Msa0793810 | 0.828208 | 1.021360e-54 | -8.615850e-47 |
| Msa0172070 | Msa0793810 | 0.814480 | 1.508098e-51 | -8.615850e-47 |
| Msa0172970 | Msa0793810 | 0.812402 | 4.316417e-51 | -8.615850e-47 |
| Msa0180500 | Msa0793810 | 0.818162 | 2.263100e-52 | -8.615850e-47 |
| Msa0184040 | Msa0793810 | 0.815208 | 1.040169e-51 | -8.615850e-47 |
| Msa0184780 | Msa0793810 | 0.816449 | 5.498757e-52 | -8.615850e-47 |
| Msa0187120 | Msa0793810 | 0.808246 | 3.403725e-50 | -8.615850e-47 |
| Msa0211150 | Msa0793810 | 0.806217 | 9.155071e-50 | -8.615850e-47 |
| Msa0222890 | Msa0793810 | 0.819851 | 9.348027e-53 | -8.615850e-47 |
| Msa0228070 | Msa0793810 | 0.812252 | 4.655369e-51 | -8.615850e-47 |
| Msa0366240 | Msa0793810 | 0.814521 | 1.476521e-51 | -8.615850e-47 |
| Msa0383500 | Msa0793810 | 0.820965 | 5.189337e-53 | -8.615850e-47 |
| Msa0385580 | Msa0793810 | 0.816585 | 5.126618e-52 | -8.615850e-47 |
| Msa0388700 | Msa0793810 | 0.804644 | 1.956317e-49 | -8.615850e-47 |
| Msa0402790 | Msa0793810 | 0.800463 | 1.424660e-48 | -8.615850e-47 |
| Msa0410650 | Msa0793810 | 0.802170 | 6.371382e-49 | -8.615850e-47 |
| Msa0479970 | Msa0793810 | 0.813185 | 2.909512e-51 | -8.615850e-47 |
| Msa0481530 | Msa0793810 | 0.807428 | 5.078422e-50 | -8.615850e-47 |
| Msa0241390 | Msa0793810 | 0.813300 | 2.744344e-51 | -8.615850e-47 |
| Msa0244810 | Msa0793810 | 0.811198 | 7.893366e-51 | -8.615850e-47 |
| Msa0260680 | Msa0793810 | 0.807047 | 6.118218e-50 | -8.615850e-47 |
| Msa0264150 | Msa0793810 | 0.800668 | 1.294009e-48 | -8.615850e-47 |
| Msa0279700 | Msa0793810 | 0.801206 | 1.004493e-48 | -8.615850e-47 |
| Msa0280090 | Msa0793810 | 0.817197 | 3.736668e-52 | -8.615850e-47 |
| Msa0299870 | Msa0793810 | 0.807434 | 5.064744e-50 | -8.615850e-47 |
| Msa0309770 | Msa0793810 | 0.818691 | 1.717998e-52 | -8.615850e-47 |
| Msa0318980 | Msa0793810 | 0.808189 | 3.499551e-50 | -8.615850e-47 |
| Msa0333030 | Msa0793810 | 0.828758 | 7.524984e-55 | -8.615850e-47 |
| Msa0336420 | Msa0793810 | 0.800372 | 1.486859e-48 | -8.615850e-47 |
| Msa0345970 | Msa0793810 | 0.801727 | 7.854025e-49 | -8.615850e-47 |
| Msa0484720 | Msa0793810 | 0.820623 | 6.219632e-53 | -8.615850e-47 |
| Msa0507680 | Msa0793810 | 0.808864 | 2.511341e-50 | -8.615850e-47 |
| Msa0510350 | Msa0793810 | 0.809977 | 1.449218e-50 | -8.615850e-47 |
| Msa0512750 | Msa0793810 | 0.811002 | 8.704623e-51 | -8.615850e-47 |
| Msa0547320 | Msa0793810 | 0.810362 | 1.196775e-50 | -8.615850e-47 |
| Msa0548240 | Msa0793810 | 0.806829 | 6.800394e-50 | -8.615850e-47 |
| Msa0563840 | Msa0793810 | 0.801910 | 7.204095e-49 | -8.615850e-47 |
| Msa0577500 | Msa0793810 | 0.814484 | 1.504801e-51 | -8.615850e-47 |
| Msa0585560 | Msa0793810 | 0.811592 | 6.481455e-51 | -8.615850e-47 |
| Msa0592440 | Msa0793810 | 0.800022 | 1.750973e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793810 | MtrunA17_Chr5g0394721 | 92.063 | 63 | 5 | 0 | 54 | 116 | 491 | 553 | 2.11e-32 | 118 |
| Msa0793810 | MtrunA17_Chr5g0438751 | 90.244 | 41 | 4 | 0 | 17 | 57 | 5 | 45 | 2.20e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGATTAAGAGCAAGTTAA+AGG | 0.257213 | 5_3:+5656822 | Msa0793810:CDS |
| ATTGATGGCGGGACATGTTC+TGG | 0.263122 | 5_3:+5656864 | Msa0793810:CDS |
| CAATGCAGTAATAGTGCTTA+AGG | 0.377954 | 5_3:-5655068 | None:intergenic |
| TTGCACATTCTTTGAGGAGA+TGG | 0.437483 | 5_3:+5656744 | Msa0793810:CDS |
| GGAGGCTTGCACATTCTTTG+AGG | 0.443690 | 5_3:+5656738 | Msa0793810:CDS |
| CATACACCATCATTGAGTTC+TGG | 0.445699 | 5_3:-5655094 | None:intergenic |
| AGATCAGATTGAGGAATTGA+TGG | 0.455944 | 5_3:+5656849 | Msa0793810:CDS |
| TTGATGGCGGGACATGTTCT+GGG | 0.497923 | 5_3:+5656865 | Msa0793810:CDS |
| GTCTAATAGCGGAAAACTTG+TGG | 0.505009 | 5_3:+5656717 | Msa0793810:CDS |
| CTTAAGCACTATTACTGCAT+TGG | 0.510075 | 5_3:+5655069 | Msa0793810:CDS |
| AGCCTGACTGTGATCTCCAT+TGG | 0.510896 | 5_3:-5656784 | None:intergenic |
| AAAGGAGAAAGATCAGATTG+AGG | 0.521570 | 5_3:+5656840 | Msa0793810:CDS |
| AATGCAGTAATAGTGCTTAA+GGG | 0.525404 | 5_3:-5655067 | None:intergenic |
| ATCCAATGGAGATCACAGTC+AGG | 0.556514 | 5_3:+5656782 | Msa0793810:CDS |
| TTTGAGGAGATGGTCTCGAA+GGG | 0.575088 | 5_3:+5656754 | Msa0793810:CDS |
| CAGATTGAGGAATTGATGGC+GGG | 0.576230 | 5_3:+5656853 | Msa0793810:CDS |
| ACACTTGTGATTCTCTTCTG+TGG | 0.580138 | 5_3:+5655013 | Msa0793810:CDS |
| CTTTGAGGAGATGGTCTCGA+AGG | 0.586496 | 5_3:+5656753 | Msa0793810:CDS |
| CTCGAAGGGATTTAATCCAA+TGG | 0.587872 | 5_3:+5656768 | Msa0793810:CDS |
| ACACTTGTGATTCTGTTCTG+TGG | 0.598435 | 5_3:+5654744 | Msa0793810:CDS |
| TAATAGCGGAAAACTTGTGG+AGG | 0.646053 | 5_3:+5656720 | Msa0793810:CDS |
| TCAGATTGAGGAATTGATGG+CGG | 0.648868 | 5_3:+5656852 | Msa0793810:CDS |
| TAACAGAGTCTGTCTAATAG+CGG | 0.652600 | 5_3:+5656706 | Msa0793810:intron |
| TTGGCACCAGAACTCAATGA+TGG | 0.662541 | 5_3:+5655088 | Msa0793810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTACTATATTACA+TGG | + | chr5_3:5655816-5655835 | Msa0793810:intron | 10.0% |
| !!! | TTTTTTTTTACTATATTACA+TGG | + | chr5_3:5655816-5655835 | Msa0793810:intron | 10.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | + | chr5_3:5655304-5655323 | Msa0793810:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | + | chr5_3:5656171-5656190 | Msa0793810:intron | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | - | chr5_3:5656332-5656351 | None:intergenic | 15.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | + | chr5_3:5655304-5655323 | Msa0793810:intron | 15.0% |
| !!! | TTTCAAATATTTAGGATTAT+TGG | + | chr5_3:5656171-5656190 | Msa0793810:intron | 15.0% |
| !! | ATTGAATTATATATATGAAG+AGG | - | chr5_3:5656332-5656351 | None:intergenic | 15.0% |
| !! | TTATTCTATCCTTAAAACTA+AGG | - | chr5_3:5654861-5654880 | None:intergenic | 20.0% |
| !! | TGTATTAATCTTCTTAATTC+AGG | - | chr5_3:5654949-5654968 | None:intergenic | 20.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | + | chr5_3:5655522-5655541 | Msa0793810:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | + | chr5_3:5655780-5655799 | Msa0793810:intron | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | - | chr5_3:5655968-5655987 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | + | chr5_3:5656163-5656182 | Msa0793810:intron | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | + | chr5_3:5656177-5656196 | Msa0793810:intron | 20.0% |
| !! | TTATTCTATCCTTAAAACTA+AGG | - | chr5_3:5654861-5654880 | None:intergenic | 20.0% |
| !! | TGTATTAATCTTCTTAATTC+AGG | - | chr5_3:5654949-5654968 | None:intergenic | 20.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | + | chr5_3:5655522-5655541 | Msa0793810:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | + | chr5_3:5655780-5655799 | Msa0793810:intron | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | - | chr5_3:5655968-5655987 | None:intergenic | 20.0% |
| !! | ATATCAGGTTTCAAATATTT+AGG | + | chr5_3:5656163-5656182 | Msa0793810:intron | 20.0% |
| !!! | ATATTTAGGATTATTGGAAT+TGG | + | chr5_3:5656177-5656196 | Msa0793810:intron | 20.0% |
| !!! | TTTTGTAAGCCTTAGTTTTA+AGG | + | chr5_3:5654849-5654868 | Msa0793810:intron | 25.0% |
| ! | ATACATCAGAAAATACATGA+TGG | + | chr5_3:5654964-5654983 | Msa0793810:intron | 25.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | - | chr5_3:5655548-5655567 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | + | chr5_3:5655547-5655566 | Msa0793810:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | + | chr5_3:5655625-5655644 | Msa0793810:intron | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | + | chr5_3:5655716-5655735 | Msa0793810:intron | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | - | chr5_3:5656146-5656165 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | + | chr5_3:5656368-5656387 | Msa0793810:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | + | chr5_3:5656369-5656388 | Msa0793810:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | + | chr5_3:5656413-5656432 | Msa0793810:intron | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | - | chr5_3:5656468-5656487 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | + | chr5_3:5656666-5656685 | Msa0793810:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | + | chr5_3:5656667-5656686 | Msa0793810:intron | 25.0% |
| !!! | TTTTGTAAGCCTTAGTTTTA+AGG | + | chr5_3:5654849-5654868 | Msa0793810:intron | 25.0% |
| ! | ATACATCAGAAAATACATGA+TGG | + | chr5_3:5654964-5654983 | Msa0793810:intron | 25.0% |
| ! | TTGAGAATGAAAACAACTTA+TGG | - | chr5_3:5655548-5655567 | None:intergenic | 25.0% |
| !!! | ATAAGTTGTTTTCATTCTCA+AGG | + | chr5_3:5655547-5655566 | Msa0793810:intron | 25.0% |
| ! | TGCATAAGCATTTATATGAT+TGG | + | chr5_3:5655625-5655644 | Msa0793810:intron | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | + | chr5_3:5655716-5655735 | Msa0793810:intron | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | - | chr5_3:5656146-5656165 | None:intergenic | 25.0% |
| !! | ATTGTTGAATTCCTTTTTGT+AGG | + | chr5_3:5656368-5656387 | Msa0793810:intron | 25.0% |
| !! | TTGTTGAATTCCTTTTTGTA+GGG | + | chr5_3:5656369-5656388 | Msa0793810:intron | 25.0% |
| !! | TTTTTCCAAAGATCAACAAT+TGG | + | chr5_3:5656413-5656432 | Msa0793810:intron | 25.0% |
| ! | ATCTAATCAACATAAGCAAT+TGG | - | chr5_3:5656468-5656487 | None:intergenic | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | + | chr5_3:5656666-5656685 | Msa0793810:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | + | chr5_3:5656667-5656686 | Msa0793810:intron | 25.0% |
| AATGCAGTAATAGTGCTTTA+GGG | - | chr5_3:5654801-5654820 | None:intergenic | 30.0% | |
| AGAAAACAGAATAGAAACAC+AGG | - | chr5_3:5654910-5654929 | None:intergenic | 30.0% | |
| AATGCAGTAATAGTGCTTAA+GGG | - | chr5_3:5655070-5655089 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | - | chr5_3:5655243-5655262 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | + | chr5_3:5655320-5655339 | Msa0793810:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | - | chr5_3:5655387-5655406 | None:intergenic | 30.0% | |
| AAACATGTGTGATACTGTTT+AGG | + | chr5_3:5655493-5655512 | Msa0793810:intron | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | + | chr5_3:5655639-5655658 | Msa0793810:intron | 30.0% |
| TGTATGTCCATGACTATATT+TGG | - | chr5_3:5655761-5655780 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | + | chr5_3:5655829-5655848 | Msa0793810:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | + | chr5_3:5655923-5655942 | Msa0793810:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | - | chr5_3:5655958-5655977 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | - | chr5_3:5656020-5656039 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | - | chr5_3:5656031-5656050 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | + | chr5_3:5656148-5656167 | Msa0793810:intron | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | - | chr5_3:5656157-5656176 | None:intergenic | 30.0% | |
| ATAAGCAATTGGTCAAAGTA+AGG | - | chr5_3:5656457-5656476 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | - | chr5_3:5656683-5656702 | None:intergenic | 30.0% | |
| AATGCAGTAATAGTGCTTTA+GGG | - | chr5_3:5654801-5654820 | None:intergenic | 30.0% | |
| AGAAAACAGAATAGAAACAC+AGG | - | chr5_3:5654910-5654929 | None:intergenic | 30.0% | |
| AATGCAGTAATAGTGCTTAA+GGG | - | chr5_3:5655070-5655089 | None:intergenic | 30.0% | |
| GCAATTATATACATAGTAGC+TGG | - | chr5_3:5655243-5655262 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGACAACAAAAGA+TGG | + | chr5_3:5655320-5655339 | Msa0793810:intron | 30.0% |
| ATAACTGGTATACTATTTCC+AGG | - | chr5_3:5655387-5655406 | None:intergenic | 30.0% | |
| AAACATGTGTGATACTGTTT+AGG | + | chr5_3:5655493-5655512 | Msa0793810:intron | 30.0% | |
| !! | TATGATTGGTGTGTTTTTGT+AGG | + | chr5_3:5655639-5655658 | Msa0793810:intron | 30.0% |
| TGTATGTCCATGACTATATT+TGG | - | chr5_3:5655761-5655780 | None:intergenic | 30.0% | |
| !!! | TATTACATGGTTTTAAGTCG+CGG | + | chr5_3:5655829-5655848 | Msa0793810:intron | 30.0% |
| TCTCAAAATCCTTTATGTTG+TGG | + | chr5_3:5655923-5655942 | Msa0793810:intron | 30.0% | |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | - | chr5_3:5655958-5655977 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | - | chr5_3:5656020-5656039 | None:intergenic | 30.0% |
| ! | TATAATTCCACGGATGATTT+TGG | - | chr5_3:5656031-5656050 | None:intergenic | 30.0% |
| TTGATTCCATTGCTAATATC+AGG | + | chr5_3:5656148-5656167 | Msa0793810:intron | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | - | chr5_3:5656157-5656176 | None:intergenic | 30.0% | |
| ATAAGCAATTGGTCAAAGTA+AGG | - | chr5_3:5656457-5656476 | None:intergenic | 30.0% | |
| AGAAACTTACTTACCCTTTA+AGG | - | chr5_3:5656683-5656702 | None:intergenic | 30.0% | |
| CAATGCAGTAATAGTGCTTT+AGG | - | chr5_3:5654802-5654821 | None:intergenic | 35.0% | |
| ! | CTAAAGCACTATTACTGCAT+TGG | + | chr5_3:5654800-5654819 | Msa0793810:intron | 35.0% |
| AACAGAATAGAAACACAGGA+AGG | - | chr5_3:5654906-5654925 | None:intergenic | 35.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | - | chr5_3:5655071-5655090 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | + | chr5_3:5655069-5655088 | Msa0793810:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | + | chr5_3:5655358-5655377 | Msa0793810:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | - | chr5_3:5655374-5655393 | None:intergenic | 35.0% | |
| ATACCAGTTATGCTACAACA+TGG | + | chr5_3:5655396-5655415 | Msa0793810:intron | 35.0% | |
| GTGGTGGTTACTATAACTAT+AGG | + | chr5_3:5655433-5655452 | Msa0793810:intron | 35.0% | |
| TGGTTACTATAACTATAGGC+TGG | + | chr5_3:5655437-5655456 | Msa0793810:intron | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | + | chr5_3:5655643-5655662 | Msa0793810:intron | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | - | chr5_3:5655691-5655710 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | + | chr5_3:5655693-5655712 | Msa0793810:intron | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | - | chr5_3:5655867-5655886 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | - | chr5_3:5655914-5655933 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | + | chr5_3:5655979-5655998 | Msa0793810:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | + | chr5_3:5656021-5656040 | Msa0793810:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | - | chr5_3:5656096-5656115 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | + | chr5_3:5656096-5656115 | Msa0793810:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | - | chr5_3:5656101-5656120 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | + | chr5_3:5656116-5656135 | Msa0793810:intron | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | + | chr5_3:5656183-5656202 | Msa0793810:intron | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | + | chr5_3:5656184-5656203 | Msa0793810:intron | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | + | chr5_3:5656286-5656305 | Msa0793810:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | + | chr5_3:5656377-5656396 | Msa0793810:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | - | chr5_3:5656382-5656401 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | - | chr5_3:5656421-5656440 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | + | chr5_3:5656706-5656725 | Msa0793810:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | + | chr5_3:5656822-5656841 | Msa0793810:CDS | 35.0% | |
| AAAGGAGAAAGATCAGATTG+AGG | + | chr5_3:5656840-5656859 | Msa0793810:CDS | 35.0% | |
| AGATCAGATTGAGGAATTGA+TGG | + | chr5_3:5656849-5656868 | Msa0793810:CDS | 35.0% | |
| CAATGCAGTAATAGTGCTTT+AGG | - | chr5_3:5654802-5654821 | None:intergenic | 35.0% | |
| ! | CTAAAGCACTATTACTGCAT+TGG | + | chr5_3:5654800-5654819 | Msa0793810:intron | 35.0% |
| AACAGAATAGAAACACAGGA+AGG | - | chr5_3:5654906-5654925 | None:intergenic | 35.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | - | chr5_3:5655071-5655090 | None:intergenic | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | + | chr5_3:5655069-5655088 | Msa0793810:CDS | 35.0% | |
| GCAAAGAATTCTACCAAAGA+AGG | + | chr5_3:5655358-5655377 | Msa0793810:intron | 35.0% | |
| TATTTCCAGGTTTCCTTCTT+TGG | - | chr5_3:5655374-5655393 | None:intergenic | 35.0% | |
| ATACCAGTTATGCTACAACA+TGG | + | chr5_3:5655396-5655415 | Msa0793810:intron | 35.0% | |
| GTGGTGGTTACTATAACTAT+AGG | + | chr5_3:5655433-5655452 | Msa0793810:intron | 35.0% | |
| TGGTTACTATAACTATAGGC+TGG | + | chr5_3:5655437-5655456 | Msa0793810:intron | 35.0% | |
| !! | ATTGGTGTGTTTTTGTAGGA+TGG | + | chr5_3:5655643-5655662 | Msa0793810:intron | 35.0% |
| AGAAATGCAAGAGATTGACT+TGG | - | chr5_3:5655691-5655710 | None:intergenic | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | + | chr5_3:5655693-5655712 | Msa0793810:intron | 35.0% | |
| ! | ATTGACTGCATTTTTCCACA+AGG | - | chr5_3:5655867-5655886 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | - | chr5_3:5655914-5655933 | None:intergenic | 35.0% |
| AATATGTTGCTGCATTTCTC+TGG | + | chr5_3:5655979-5655998 | Msa0793810:intron | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | + | chr5_3:5656021-5656040 | Msa0793810:intron | 35.0% | |
| ! | AGATTTTCAATTTCGAGGAC+TGG | - | chr5_3:5656096-5656115 | None:intergenic | 35.0% |
| GTCCTCGAAATTGAAAATCT+CGG | + | chr5_3:5656096-5656115 | Msa0793810:intron | 35.0% | |
| ! | ATCCGAGATTTTCAATTTCG+AGG | - | chr5_3:5656101-5656120 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | + | chr5_3:5656116-5656135 | Msa0793810:intron | 35.0% |
| AGGATTATTGGAATTGGTCA+TGG | + | chr5_3:5656183-5656202 | Msa0793810:intron | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | + | chr5_3:5656184-5656203 | Msa0793810:intron | 35.0% | |
| TCACTCACAGGTGATTTAAT+TGG | + | chr5_3:5656286-5656305 | Msa0793810:intron | 35.0% | |
| ! | TTCCTTTTTGTAGGGAACTT+TGG | + | chr5_3:5656377-5656396 | Msa0793810:intron | 35.0% |
| AACCAAAGTTCCCTACAAAA+AGG | - | chr5_3:5656382-5656401 | None:intergenic | 35.0% | |
| CTTGTCCAATTGTTGATCTT+TGG | - | chr5_3:5656421-5656440 | None:intergenic | 35.0% | |
| TAACAGAGTCTGTCTAATAG+CGG | + | chr5_3:5656706-5656725 | Msa0793810:intron | 35.0% | |
| CGAGATTAAGAGCAAGTTAA+AGG | + | chr5_3:5656822-5656841 | Msa0793810:CDS | 35.0% | |
| AAAGGAGAAAGATCAGATTG+AGG | + | chr5_3:5656840-5656859 | Msa0793810:CDS | 35.0% | |
| AGATCAGATTGAGGAATTGA+TGG | + | chr5_3:5656849-5656868 | Msa0793810:CDS | 35.0% | |
| ACACTTGTGATTCTGTTCTG+TGG | + | chr5_3:5654744-5654763 | Msa0793810:CDS | 40.0% | |
| GTGGTTTAACTCTTGCATCA+AGG | + | chr5_3:5654763-5654782 | Msa0793810:intron | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr5_3:5654828-5654847 | None:intergenic | 40.0% | |
| ACACTTGTGATTCTCTTCTG+TGG | + | chr5_3:5655013-5655032 | Msa0793810:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr5_3:5654828-5654847 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | + | chr5_3:5655118-5655137 | Msa0793810:intron | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | + | chr5_3:5655141-5655160 | Msa0793810:intron | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | + | chr5_3:5655366-5655385 | Msa0793810:intron | 40.0% | |
| AGTCCATGTTGTAGCATAAC+TGG | - | chr5_3:5655402-5655421 | None:intergenic | 40.0% | |
| ! | GCTACAACATGGACTATTCA+TGG | + | chr5_3:5655407-5655426 | Msa0793810:intron | 40.0% |
| ! | CATGGACTATTCATGGTTAG+TGG | + | chr5_3:5655414-5655433 | Msa0793810:intron | 40.0% |
| ! | TTTTGTAGGATGGTGTGACA+TGG | + | chr5_3:5655653-5655672 | Msa0793810:intron | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | - | chr5_3:5655688-5655707 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | + | chr5_3:5655703-5655722 | Msa0793810:intron | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | + | chr5_3:5655733-5655752 | Msa0793810:intron | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | + | chr5_3:5655751-5655770 | Msa0793810:intron | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | + | chr5_3:5655868-5655887 | Msa0793810:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | + | chr5_3:5655886-5655905 | Msa0793810:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | - | chr5_3:5655935-5655954 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | - | chr5_3:5656041-5656060 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | - | chr5_3:5656244-5656263 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | + | chr5_3:5656242-5656261 | Msa0793810:intron | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | + | chr5_3:5656263-5656282 | Msa0793810:intron | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | - | chr5_3:5656493-5656512 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | - | chr5_3:5656498-5656517 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | - | chr5_3:5656521-5656540 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | + | chr5_3:5656717-5656736 | Msa0793810:CDS | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | + | chr5_3:5656720-5656739 | Msa0793810:CDS | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | + | chr5_3:5656744-5656763 | Msa0793810:CDS | 40.0% |
| CTCGAAGGGATTTAATCCAA+TGG | + | chr5_3:5656768-5656787 | Msa0793810:CDS | 40.0% | |
| TCAGATTGAGGAATTGATGG+CGG | + | chr5_3:5656852-5656871 | Msa0793810:CDS | 40.0% | |
| ACACTTGTGATTCTGTTCTG+TGG | + | chr5_3:5654744-5654763 | Msa0793810:CDS | 40.0% | |
| GTGGTTTAACTCTTGCATCA+AGG | + | chr5_3:5654763-5654782 | Msa0793810:intron | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr5_3:5654828-5654847 | None:intergenic | 40.0% | |
| ACACTTGTGATTCTCTTCTG+TGG | + | chr5_3:5655013-5655032 | Msa0793810:CDS | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | chr5_3:5654828-5654847 | None:intergenic | 40.0% | |
| TCGTCACTATTGAAGACACA+AGG | + | chr5_3:5655118-5655137 | Msa0793810:intron | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | + | chr5_3:5655141-5655160 | Msa0793810:intron | 40.0% | |
| TTCTACCAAAGAAGGAAACC+TGG | + | chr5_3:5655366-5655385 | Msa0793810:intron | 40.0% | |
| AGTCCATGTTGTAGCATAAC+TGG | - | chr5_3:5655402-5655421 | None:intergenic | 40.0% | |
| ! | GCTACAACATGGACTATTCA+TGG | + | chr5_3:5655407-5655426 | Msa0793810:intron | 40.0% |
| ! | CATGGACTATTCATGGTTAG+TGG | + | chr5_3:5655414-5655433 | Msa0793810:intron | 40.0% |
| ! | TTTTGTAGGATGGTGTGACA+TGG | + | chr5_3:5655653-5655672 | Msa0793810:intron | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | - | chr5_3:5655688-5655707 | None:intergenic | 40.0% |
| GCATTTCTGTTGGCAGATAA+TGG | + | chr5_3:5655703-5655722 | Msa0793810:intron | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | + | chr5_3:5655733-5655752 | Msa0793810:intron | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | + | chr5_3:5655751-5655770 | Msa0793810:intron | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | + | chr5_3:5655868-5655887 | Msa0793810:intron | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | + | chr5_3:5655886-5655905 | Msa0793810:intron | 40.0% | |
| ATTAAGGGGCCACAACATAA+AGG | - | chr5_3:5655935-5655954 | None:intergenic | 40.0% | |
| !! | GAGAGCGTCTTATAATTCCA+CGG | - | chr5_3:5656041-5656060 | None:intergenic | 40.0% |
| CAGTTTGATCATGCACATAC+TGG | - | chr5_3:5656244-5656263 | None:intergenic | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | + | chr5_3:5656242-5656261 | Msa0793810:intron | 40.0% | |
| GGACAAAAACTACACTACGT+TGG | + | chr5_3:5656263-5656282 | Msa0793810:intron | 40.0% | |
| !!! | AGCATTTTTTGCTACAGGTG+AGG | - | chr5_3:5656493-5656512 | None:intergenic | 40.0% |
| !!! | TCAGCAGCATTTTTTGCTAC+AGG | - | chr5_3:5656498-5656517 | None:intergenic | 40.0% |
| GTGTTACCTCTGCAATGAAA+TGG | - | chr5_3:5656521-5656540 | None:intergenic | 40.0% | |
| ! | GTCTAATAGCGGAAAACTTG+TGG | + | chr5_3:5656717-5656736 | Msa0793810:CDS | 40.0% |
| ! | TAATAGCGGAAAACTTGTGG+AGG | + | chr5_3:5656720-5656739 | Msa0793810:CDS | 40.0% |
| ! | TTGCACATTCTTTGAGGAGA+TGG | + | chr5_3:5656744-5656763 | Msa0793810:CDS | 40.0% |
| CTCGAAGGGATTTAATCCAA+TGG | + | chr5_3:5656768-5656787 | Msa0793810:CDS | 40.0% | |
| TCAGATTGAGGAATTGATGG+CGG | + | chr5_3:5656852-5656871 | Msa0793810:CDS | 40.0% | |
| TTGGCACCAGAACTCAATGA+TGG | + | chr5_3:5654819-5654838 | Msa0793810:intron | 45.0% | |
| TTGGCACCAGAACTCAATGA+TGG | + | chr5_3:5654819-5654838 | Msa0793810:intron | 45.0% | |
| GGACTATTCATGGTTAGTGG+TGG | + | chr5_3:5655417-5655436 | Msa0793810:intron | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | + | chr5_3:5655849-5655868 | Msa0793810:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | - | chr5_3:5655950-5655969 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | - | chr5_3:5655951-5655970 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | - | chr5_3:5656233-5656252 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | + | chr5_3:5656386-5656405 | Msa0793810:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | + | chr5_3:5656512-5656531 | Msa0793810:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | + | chr5_3:5656754-5656773 | Msa0793810:CDS | 45.0% | |
| ATCCAATGGAGATCACAGTC+AGG | + | chr5_3:5656782-5656801 | Msa0793810:CDS | 45.0% | |
| ! | CAGATTGAGGAATTGATGGC+GGG | + | chr5_3:5656853-5656872 | Msa0793810:CDS | 45.0% |
| TTGGCACCAGAACTCAATGA+TGG | + | chr5_3:5654819-5654838 | Msa0793810:intron | 45.0% | |
| TTGGCACCAGAACTCAATGA+TGG | + | chr5_3:5654819-5654838 | Msa0793810:intron | 45.0% | |
| GGACTATTCATGGTTAGTGG+TGG | + | chr5_3:5655417-5655436 | Msa0793810:intron | 45.0% | |
| CGGTTACACTACAAACCTTG+TGG | + | chr5_3:5655849-5655868 | Msa0793810:intron | 45.0% | |
| !! | TGTGGTCTGCAACGGATTAA+GGG | - | chr5_3:5655950-5655969 | None:intergenic | 45.0% |
| !! | TTGTGGTCTGCAACGGATTA+AGG | - | chr5_3:5655951-5655970 | None:intergenic | 45.0% |
| TGCACATACTGGAATGTTGC+TGG | - | chr5_3:5656233-5656252 | None:intergenic | 45.0% | |
| GTAGGGAACTTTGGTTGCAT+TGG | + | chr5_3:5656386-5656405 | Msa0793810:intron | 45.0% | |
| TGCTGACCATTTCATTGCAG+AGG | + | chr5_3:5656512-5656531 | Msa0793810:intron | 45.0% | |
| TTTGAGGAGATGGTCTCGAA+GGG | + | chr5_3:5656754-5656773 | Msa0793810:CDS | 45.0% | |
| ATCCAATGGAGATCACAGTC+AGG | + | chr5_3:5656782-5656801 | Msa0793810:CDS | 45.0% | |
| ! | CAGATTGAGGAATTGATGGC+GGG | + | chr5_3:5656853-5656872 | Msa0793810:CDS | 45.0% |
| !! | GTGGTCTGCAACGGATTAAG+GGG | - | chr5_3:5655949-5655968 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | + | chr5_3:5656052-5656071 | Msa0793810:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | + | chr5_3:5656274-5656293 | Msa0793810:intron | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | + | chr5_3:5656738-5656757 | Msa0793810:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | + | chr5_3:5656753-5656772 | Msa0793810:CDS | 50.0% |
| AGCCTGACTGTGATCTCCAT+TGG | - | chr5_3:5656787-5656806 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | + | chr5_3:5656864-5656883 | Msa0793810:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | + | chr5_3:5656865-5656884 | Msa0793810:CDS | 50.0% |
| !! | GTGGTCTGCAACGGATTAAG+GGG | - | chr5_3:5655949-5655968 | None:intergenic | 50.0% |
| GACGCTCTCAACTTAGACTC+TGG | + | chr5_3:5656052-5656071 | Msa0793810:intron | 50.0% | |
| ACACTACGTTGGTCACTCAC+AGG | + | chr5_3:5656274-5656293 | Msa0793810:intron | 50.0% | |
| GGAGGCTTGCACATTCTTTG+AGG | + | chr5_3:5656738-5656757 | Msa0793810:CDS | 50.0% | |
| ! | CTTTGAGGAGATGGTCTCGA+AGG | + | chr5_3:5656753-5656772 | Msa0793810:CDS | 50.0% |
| AGCCTGACTGTGATCTCCAT+TGG | - | chr5_3:5656787-5656806 | None:intergenic | 50.0% | |
| !! | ATTGATGGCGGGACATGTTC+TGG | + | chr5_3:5656864-5656883 | Msa0793810:CDS | 50.0% |
| !! | TTGATGGCGGGACATGTTCT+GGG | + | chr5_3:5656865-5656884 | Msa0793810:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5654720 | 5656903 | 5654720 | ID=Msa0793810;Name=Msa0793810 |
| chr5_3 | mRNA | 5654720 | 5656903 | 5654720 | ID=Msa0793810-mRNA-1;Parent=Msa0793810;Name=Msa0793810-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|0|0|1|0|0.33|3|0|116 |
| chr5_3 | exon | 5654720 | 5654765 | 5654720 | ID=Msa0793810-mRNA-1:exon:2227;Parent=Msa0793810-mRNA-1 |
| chr5_3 | exon | 5654999 | 5655111 | 5654999 | ID=Msa0793810-mRNA-1:exon:2228;Parent=Msa0793810-mRNA-1 |
| chr5_3 | exon | 5656712 | 5656903 | 5656712 | ID=Msa0793810-mRNA-1:exon:2229;Parent=Msa0793810-mRNA-1 |
| chr5_3 | CDS | 5654720 | 5654765 | 5654720 | ID=Msa0793810-mRNA-1:cds;Parent=Msa0793810-mRNA-1 |
| chr5_3 | CDS | 5654999 | 5655111 | 5654999 | ID=Msa0793810-mRNA-1:cds;Parent=Msa0793810-mRNA-1 |
| chr5_3 | CDS | 5656712 | 5656903 | 5656712 | ID=Msa0793810-mRNA-1:cds;Parent=Msa0793810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
