AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743950 MtrunA17_Chr5g0446451 85.616 146 21 0 1 146 594 739 9.78e-85 264
Msa0743950 MtrunA17_Chr4g0013841 42.466 146 84 0 1 146 624 769 5.56e-38 136
Msa0743950 MtrunA17_Chr1g0146681 45.517 145 79 0 3 147 455 599 7.00e-37 133
Msa0743950 MtrunA17_Chr6g0461581 42.553 141 81 0 2 142 846 986 1.15e-35 130
Msa0743950 MtrunA17_Chr4g0051471 43.448 145 82 0 1 145 417 561 1.98e-35 129
Msa0743950 MtrunA17_Chr8g0392791 46.897 145 77 0 3 147 553 697 2.00e-35 129
Msa0743950 MtrunA17_Chr1g0174141 39.310 145 88 0 1 145 272 416 1.91e-34 125
Msa0743950 MtrunA17_Chr3g0081081 47.552 143 74 1 3 145 580 721 3.19e-34 126
Msa0743950 MtrunA17_Chr2g0321231 40.690 145 86 0 1 145 650 794 5.21e-34 125
Msa0743950 MtrunA17_Chr1g0205351 42.857 147 82 2 2 147 470 615 1.63e-33 124
Msa0743950 MtrunA17_Chr8g0368101 41.259 143 84 0 3 145 544 686 7.00e-33 122
Msa0743950 MtrunA17_Chr8g0365961 41.259 143 84 0 3 145 535 677 7.75e-33 122
Msa0743950 MtrunA17_Chr5g0396201 39.310 145 88 0 3 147 456 600 1.48e-32 121
Msa0743950 MtrunA17_Chr1g0186131 39.583 144 87 0 2 145 581 724 4.73e-32 119
Msa0743950 MtrunA17_Chr8g0392771 42.759 145 83 0 3 147 521 665 6.20e-32 119
Msa0743950 MtrunA17_Chr5g0440921 41.497 147 84 2 2 147 470 615 6.75e-32 119
Msa0743950 MtrunA17_Chr7g0257861 41.497 147 86 0 1 147 381 527 1.82e-31 117
Msa0743950 MtrunA17_Chr4g0052381 40.559 143 85 0 3 145 470 612 3.41e-31 117
Msa0743950 MtrunA17_Chr8g0364661 40.559 143 85 0 3 145 477 619 6.53e-31 116
Msa0743950 MtrunA17_Chr8g0393341 39.310 145 88 0 3 147 572 716 7.25e-31 116
Msa0743950 MtrunA17_Chr7g0245241 41.892 148 84 2 1 147 492 638 7.61e-31 116
Msa0743950 MtrunA17_Chr3g0094791 40.667 150 85 1 2 147 506 655 1.02e-30 115
Msa0743950 MtrunA17_Chr7g0252001 43.165 139 79 0 3 141 459 597 2.23e-30 115
Msa0743950 MtrunA17_Chr2g0285601 38.889 144 88 0 4 147 401 544 2.30e-30 114
Msa0743950 MtrunA17_Chr7g0217631 42.963 135 77 0 13 147 497 631 2.78e-30 114
Msa0743950 MtrunA17_Chr4g0052361 39.860 143 86 0 3 145 453 595 4.21e-30 114
Msa0743950 MtrunA17_Chr1g0209951 40.816 147 87 0 1 147 645 791 5.35e-30 114
Msa0743950 MtrunA17_Chr3g0081091 45.070 142 77 1 2 143 597 737 5.36e-30 114
Msa0743950 MtrunA17_Chr3g0131331 37.241 145 91 0 3 147 341 485 5.64e-30 113
Msa0743950 MtrunA17_Chr2g0296821 40.559 143 81 1 7 145 678 820 1.75e-29 112
Msa0743950 MtrunA17_Chr3g0136451 34.932 146 95 0 2 147 759 904 1.86e-29 112
Msa0743950 MtrunA17_Chr1g0165931 39.583 144 87 0 2 145 415 558 2.34e-29 112
Msa0743950 MtrunA17_Chr4g0003141 36.986 146 92 0 1 146 529 674 3.73e-29 111
Msa0743950 MtrunA17_Chr3g0099291 40.000 145 87 0 2 146 571 715 4.95e-29 111
Msa0743950 MtrunA17_Chr1g0166001 39.583 144 87 0 2 145 639 782 8.78e-29 110
Msa0743950 MtrunA17_Chr1g0210371 37.762 143 89 0 3 145 417 559 9.74e-29 110
Msa0743950 MtrunA17_Chr3g0130341 42.969 128 73 0 3 130 550 677 1.08e-28 110
Msa0743950 MtrunA17_Chr4g0003921 43.902 123 69 0 2 124 659 781 1.33e-28 110
Msa0743950 MtrunA17_Chr2g0326691 39.583 144 87 0 2 145 464 607 1.72e-28 109
Msa0743950 MtrunA17_Chr4g0020001 36.301 146 93 0 2 147 358 503 2.20e-28 108
Msa0743950 MtrunA17_Chr7g0220551 38.028 142 88 0 1 142 731 872 7.55e-28 107
Msa0743950 MtrunA17_Chr1g0205461 36.364 143 91 0 3 145 569 711 1.18e-27 107
Msa0743950 MtrunA17_Chr4g0061031 44.604 139 74 2 2 137 409 547 1.25e-27 107
Msa0743950 MtrunA17_Chr8g0380361 36.552 145 92 0 3 147 487 631 1.29e-27 107
Msa0743950 MtrunA17_Chr3g0087821 37.857 140 87 0 2 141 409 548 1.29e-27 107
Msa0743950 MtrunA17_Chr1g0185091 37.931 145 89 1 3 146 729 873 1.35e-27 107
Msa0743950 MtrunA17_Chr4g0073691 37.324 142 89 0 1 142 568 709 1.81e-27 106
Msa0743950 MtrunA17_Chr5g0394691 36.364 143 91 0 3 145 625 767 3.33e-27 105
Msa0743950 MtrunA17_Chr4g0053681 39.860 143 86 0 3 145 413 555 4.02e-27 105
Msa0743950 MtrunA17_Chr6g0480651 35.417 144 93 0 2 145 532 675 5.22e-27 105
Msa0743950 MtrunA17_Chr1g0178401 39.726 146 88 0 1 146 358 503 7.46e-27 104
Msa0743950 MtrunA17_Chr1g0192971 40.580 138 82 0 2 139 435 572 9.06e-27 104
Msa0743950 MtrunA17_Chr5g0417311 37.415 147 91 1 2 147 386 532 9.82e-27 104
Msa0743950 MtrunA17_Chr2g0300971 36.806 144 91 0 4 147 528 671 1.06e-26 104
Msa0743950 MtrunA17_Chr4g0063341 36.364 143 91 0 3 145 525 667 1.50e-26 104
Msa0743950 MtrunA17_Chr4g0044381 38.194 144 89 0 3 146 601 744 1.59e-26 103
Msa0743950 MtrunA17_Chr8g0378921 36.364 143 90 1 1 142 400 542 1.82e-26 103
Msa0743950 MtrunA17_Chr6g0476351 40.000 140 83 1 2 140 402 541 2.09e-26 103
Msa0743950 MtrunA17_Chr5g0394591 35.762 151 96 1 1 150 515 665 2.42e-26 103
Msa0743950 MtrunA17_Chr4g0055661 37.063 143 90 0 3 145 421 563 2.98e-26 103
Msa0743950 MtrunA17_Chr5g0410091 31.507 146 100 0 2 147 232 377 3.13e-26 102
Msa0743950 MtrunA17_Chr3g0144951 36.735 147 91 1 3 147 356 502 4.37e-26 102
Msa0743950 MtrunA17_Chr7g0252091 34.694 147 95 1 2 147 643 789 4.78e-26 102
Msa0743950 MtrunA17_Chr3g0121921 37.931 145 90 0 3 147 403 547 9.05e-26 102
Msa0743950 MtrunA17_Chr4g0060651 39.437 142 85 1 2 142 435 576 9.66e-26 101
Msa0743950 MtrunA17_Chr8g0391951 39.855 138 82 1 10 147 495 631 2.92e-25 100
Msa0743950 MtrunA17_Chr5g0402921 43.103 116 65 1 2 116 575 690 3.42e-25 100
Msa0743950 MtrunA17_Chr4g0045161 34.752 141 92 0 2 142 769 909 4.29e-25 100
Msa0743950 MtrunA17_Chr4g0051901 39.516 124 75 0 3 126 502 625 5.96e-25 99.4
Msa0743950 MtrunA17_Chr1g0165911 39.310 145 81 1 1 145 423 560 5.97e-25 99.4
Msa0743950 MtrunA17_Chr6g0476471 37.857 140 86 1 2 140 67 206 6.96e-25 96.7
Msa0743950 MtrunA17_Chr5g0419031 36.486 148 91 3 1 145 347 494 8.12e-25 99.0
Msa0743950 MtrunA17_Chr8g0379211 34.752 141 92 0 2 142 655 795 9.44e-25 99.0
Msa0743950 MtrunA17_Chr1g0146671 39.167 120 73 0 2 121 699 818 1.39e-24 98.6
Msa0743950 MtrunA17_Chr7g0255871 36.806 144 91 0 2 145 435 578 1.79e-24 98.2
Msa0743950 MtrunA17_Chr8g0381811 38.095 105 65 0 2 106 458 562 1.90e-24 98.2
Msa0743950 MtrunA17_Chr7g0222961 34.965 143 93 0 3 145 506 648 2.09e-24 98.2
Msa0743950 MtrunA17_Chr8g0381801 37.241 145 90 1 1 145 486 629 2.76e-24 97.8
Msa0743950 MtrunA17_Chr3g0081041 42.857 98 56 0 3 100 451 548 3.06e-24 97.4
Msa0743950 MtrunA17_Chr7g0246841 33.333 144 96 0 2 145 559 702 3.74e-24 97.4
Msa0743950 MtrunA17_Chr7g0249241 34.375 128 84 0 15 142 554 681 3.84e-24 97.4
Msa0743950 MtrunA17_Chr7g0272891 35.461 141 91 0 2 142 519 659 4.05e-24 97.1
Msa0743950 MtrunA17_Chr7g0220281 32.168 143 97 0 1 143 401 543 5.35e-24 96.7
Msa0743950 MtrunA17_Chr5g0421551 35.507 138 89 0 10 147 469 606 6.25e-24 96.7
Msa0743950 MtrunA17_Chr5g0412001 35.507 138 89 0 10 147 469 606 6.61e-24 96.7
Msa0743950 MtrunA17_Chr2g0331571 35.252 139 90 0 3 141 407 545 6.77e-24 96.7
Msa0743950 MtrunA17_Chr8g0375731 41.135 141 83 0 7 147 415 555 1.53e-23 95.5
Msa0743950 MtrunA17_Chr7g0246581 33.562 146 97 0 2 147 594 739 1.79e-23 95.5
Msa0743950 MtrunA17_Chr8g0391681 39.837 123 74 0 4 126 741 863 1.90e-23 95.5
Msa0743950 MtrunA17_Chr7g0228601 30.769 143 99 0 3 145 739 881 2.13e-23 95.1
Msa0743950 MtrunA17_Chr8g0386861 35.821 134 86 0 2 135 711 844 3.24e-23 94.7
Msa0743950 MtrunA17_Chr4g0062971 37.778 135 82 1 3 135 810 944 3.28e-23 94.7
Msa0743950 MtrunA17_Chr5g0396021 31.507 146 100 0 2 147 554 699 3.40e-23 94.7
Msa0743950 MtrunA17_Chr4g0060771 36.301 146 93 0 2 147 419 564 4.88e-23 94.0
Msa0743950 MtrunA17_Chr1g0165051 36.885 122 77 0 3 124 670 791 4.99e-23 94.0
Msa0743950 MtrunA17_Chr7g0265441 30.822 146 101 0 1 146 660 805 9.53e-23 93.2
Msa0743950 MtrunA17_Chr2g0295771 33.103 145 94 1 3 147 293 434 1.46e-22 92.4
Msa0743950 MtrunA17_Chr6g0458311 37.903 124 77 0 2 125 532 655 2.65e-22 92.0
Msa0743950 MtrunA17_Chr7g0235501 31.343 134 91 1 1 133 440 573 4.01e-22 91.3
Msa0743950 MtrunA17_Chr5g0448481 41.379 116 66 1 12 125 697 812 5.14e-22 91.3
Msa0743950 MtrunA17_Chr1g0178471 40.984 122 72 0 1 122 422 543 5.59e-22 90.9
Msa0743950 MtrunA17_Chr7g0263761 38.053 113 70 0 13 125 640 752 1.23e-21 90.1
Msa0743950 MtrunA17_Chr1g0149231 27.586 145 105 0 2 146 398 542 3.02e-21 89.0
Msa0743950 MtrunA17_Chr8g0347201 31.469 143 98 0 3 145 724 866 4.69e-21 88.6
Msa0743950 MtrunA17_Chr4g0074261 40.541 111 66 0 15 125 592 702 5.62e-21 88.2
Msa0743950 MtrunA17_Chr3g0081591 31.724 145 98 1 3 147 484 627 6.64e-21 87.8
Msa0743950 MtrunA17_Chr1g0211821 34.783 115 75 0 2 116 405 519 8.61e-21 87.4
Msa0743950 MtrunA17_Chr8g0351541 37.815 119 70 1 2 116 646 764 1.23e-20 87.4
Msa0743950 MtrunA17_Chr4g0052501 38.017 121 73 1 3 121 638 758 2.23e-20 86.7
Msa0743950 MtrunA17_Chr7g0248291 44.444 90 50 0 1 90 556 645 2.40e-20 86.3
Msa0743950 MtrunA17_Chr3g0139361 32.867 143 88 2 4 145 432 567 3.73e-20 85.9
Msa0743950 MtrunA17_Chr3g0093831 40.000 100 60 0 3 102 698 797 3.93e-20 85.9
Msa0743950 MtrunA17_Chr2g0307871 33.099 142 93 2 1 141 760 900 5.12e-20 85.5
Msa0743950 MtrunA17_Chr8g0346451 36.607 112 71 0 2 113 371 482 6.13e-20 85.1
Msa0743950 MtrunA17_Chr4g0066861 42.529 87 50 0 2 88 510 596 8.21e-20 84.7
Msa0743950 MtrunA17_Chr7g0259141 40.476 126 73 1 2 125 536 661 8.54e-20 84.7
Msa0743950 MtrunA17_Chr4g0047321 37.288 118 74 0 8 125 383 500 8.67e-20 84.7
Msa0743950 MtrunA17_Chr7g0268001 37.500 96 60 0 47 142 6 101 1.48e-19 81.6
Msa0743950 MtrunA17_Chr7g0248271 42.222 90 52 0 1 90 485 574 1.96e-19 83.6
Msa0743950 MtrunA17_Chr3g0130351 34.266 143 89 3 1 139 438 579 3.07e-19 83.2
Msa0743950 MtrunA17_Chr5g0406141 34.454 119 78 0 15 133 627 745 3.33e-19 83.2
Msa0743950 MtrunA17_Chr4g0031971 41.489 94 54 1 3 96 463 555 3.63e-19 82.8
Msa0743950 MtrunA17_Chr4g0005171 34.559 136 87 1 3 138 613 746 4.67e-19 82.8
Msa0743950 MtrunA17_Chr3g0131281 33.058 121 81 0 2 122 749 869 7.22e-19 82.0
Msa0743950 MtrunA17_Chr8g0371191 36.842 133 83 1 1 133 379 510 7.28e-19 82.0
Msa0743950 MtrunA17_Chr2g0313271 34.746 118 77 0 1 118 577 694 9.65e-19 81.6
Msa0743950 MtrunA17_Chr4g0045481 36.283 113 72 0 2 114 591 703 1.51e-18 81.3
Msa0743950 MtrunA17_Chr1g0181931 29.600 125 88 0 2 126 551 675 3.47e-18 80.1
Msa0743950 MtrunA17_Chr5g0404391 32.075 106 72 0 2 107 401 506 4.00e-18 80.1
Msa0743950 MtrunA17_Chr8g0349171 33.600 125 83 0 1 125 524 648 9.80e-18 79.0
Msa0743950 MtrunA17_Chr5g0403151 34.400 125 82 0 1 125 524 648 1.09e-17 79.0
Msa0743950 MtrunA17_Chr4g0004081 33.594 128 84 1 3 129 562 689 1.29e-17 78.6
Msa0743950 MtrunA17_Chr4g0006361 32.800 125 84 0 1 125 539 663 1.37e-17 78.6
Msa0743950 MtrunA17_Chr3g0087311 38.776 98 57 1 1 95 760 857 1.68e-17 78.2
Msa0743950 MtrunA17_Chr1g0193831 30.952 126 86 1 2 126 598 723 2.59e-17 77.8
Msa0743950 MtrunA17_Chr5g0399291 39.080 87 53 0 2 88 430 516 2.83e-17 77.4
Msa0743950 MtrunA17_Chr8g0367121 33.621 116 77 0 2 117 517 632 3.10e-17 77.4
Msa0743950 MtrunA17_Chr1g0186051 35.043 117 70 2 1 114 497 610 4.88e-17 77.0
Msa0743950 MtrunA17_Chr4g0037631 35.652 115 74 0 2 116 467 581 1.04e-16 75.9
Msa0743950 MtrunA17_Chr5g0418691 38.835 103 62 1 13 114 413 515 1.22e-16 75.9
Msa0743950 MtrunA17_Chr2g0321861 29.412 136 96 0 3 138 103 238 1.40e-16 73.6
Msa0743950 MtrunA17_Chr2g0313451 35.345 116 75 0 3 118 503 618 1.50e-16 75.5
Msa0743950 MtrunA17_Chr7g0251271 39.535 86 52 0 2 87 474 559 1.77e-16 75.1
Msa0743950 MtrunA17_Chr4g0051151 38.202 89 55 0 1 89 562 650 2.79e-16 74.7
Msa0743950 MtrunA17_Chr4g0034341 32.479 117 79 0 1 117 552 668 3.47e-16 74.3
Msa0743950 MtrunA17_Chr4g0001441 34.127 126 83 0 1 126 466 591 3.71e-16 74.3
Msa0743950 MtrunA17_Chr2g0287441 36.905 84 53 0 2 85 609 692 3.77e-16 74.3
Msa0743950 MtrunA17_Chr5g0443321 33.036 112 75 0 2 113 422 533 3.82e-16 74.3
Msa0743950 MtrunA17_Chr4g0044101 38.095 84 52 0 2 85 32 115 4.49e-16 69.7
Msa0743950 MtrunA17_Chr1g0149951 32.773 119 75 1 18 136 584 697 5.70e-16 73.9
Msa0743950 MtrunA17_Chr8g0366221 31.008 129 87 2 1 128 462 589 6.07e-16 73.6
Msa0743950 MtrunA17_Chr3g0114971 42.045 88 50 1 1 88 600 686 6.52e-16 73.6
Msa0743950 MtrunA17_Chr8g0364841 35.345 116 75 0 3 118 567 682 8.02e-16 73.6
Msa0743950 MtrunA17_Chr4g0042871 43.333 90 47 2 1 88 600 687 1.14e-15 72.8
Msa0743950 MtrunA17_Chr1g0164941 33.577 137 90 1 1 137 489 624 1.21e-15 72.8
Msa0743950 MtrunA17_Chr3g0077311 34.483 87 56 1 2 87 168 254 1.25e-15 71.6
Msa0743950 MtrunA17_Chr7g0266871 39.286 84 51 0 2 85 468 551 1.57e-15 72.4
Msa0743950 MtrunA17_Chr8g0366421 31.897 116 79 0 1 116 745 860 1.91e-15 72.4
Msa0743950 MtrunA17_Chr5g0396241 31.429 140 95 1 2 141 589 727 1.95e-15 72.4
Msa0743950 MtrunA17_Chr3g0145381 45.455 77 42 0 12 88 391 467 3.19e-15 71.6
Msa0743950 MtrunA17_Chr4g0076041 36.364 88 56 0 3 90 469 556 3.32e-15 71.6
Msa0743950 MtrunA17_Chr7g0226461 33.333 108 71 1 3 109 424 531 4.88e-15 71.2
Msa0743950 MtrunA17_Chr2g0319231 29.293 99 70 0 2 100 115 213 5.46e-15 69.3
Msa0743950 MtrunA17_Chr8g0371731 36.364 88 56 0 1 88 586 673 5.70e-15 70.9
Msa0743950 MtrunA17_Chr2g0321911 29.365 126 89 0 3 128 366 491 5.92e-15 70.9
Msa0743950 MtrunA17_Chr3g0106791 32.258 124 84 0 1 124 31 154 6.62e-15 67.8
Msa0743950 MtrunA17_Chr2g0278191 36.364 88 56 0 3 90 469 556 6.81e-15 70.9
Msa0743950 MtrunA17_Chr4g0014491 29.752 121 85 0 2 122 806 926 7.00e-15 70.9
Msa0743950 MtrunA17_Chr1g0166031 31.293 147 88 3 1 145 151 286 7.49e-15 70.1
Msa0743950 MtrunA17_Chr1g0210961 40.230 87 52 0 2 88 577 663 7.97e-15 70.5
Msa0743950 MtrunA17_Chr4g0010831 39.759 83 49 1 6 87 328 410 9.47e-15 70.1
Msa0743950 MtrunA17_Chr6g0476781 31.034 116 80 0 1 116 402 517 9.72e-15 70.1
Msa0743950 MtrunA17_Chr4g0066641 34.545 110 69 1 19 125 513 622 1.46e-14 69.7
Msa0743950 MtrunA17_Chr2g0303911 36.538 104 62 2 15 114 592 695 1.63e-14 69.7
Msa0743950 MtrunA17_Chr5g0418021 29.452 146 92 2 1 145 396 531 1.85e-14 69.3
Msa0743950 MtrunA17_Chr7g0218091 33.333 102 68 0 3 104 478 579 1.99e-14 69.3
Msa0743950 MtrunA17_Chr5g0418811 32.773 119 77 1 2 117 373 491 2.93e-14 68.9
Msa0743950 MtrunA17_Chr4g0060311 36.047 86 55 0 2 87 450 535 3.53e-14 68.6
Msa0743950 MtrunA17_Chr3g0078291 33.333 96 64 0 15 110 378 473 3.57e-14 68.6
Msa0743950 MtrunA17_Chr3g0079111 37.634 93 51 1 3 88 379 471 3.69e-14 68.6
Msa0743950 MtrunA17_Chr4g0037911 36.047 86 55 0 2 87 448 533 3.84e-14 68.6
Msa0743950 MtrunA17_Chr6g0453621 31.452 124 85 0 11 134 423 546 6.41e-14 67.8
Msa0743950 MtrunA17_Chr7g0270241 33.333 87 58 0 2 88 475 561 7.04e-14 67.8
Msa0743950 MtrunA17_Chr3g0141251 30.147 136 89 1 3 132 424 559 9.76e-14 67.4
Msa0743950 MtrunA17_Chr6g0476401 28.777 139 68 1 2 140 127 234 1.17e-13 66.6
Msa0743950 MtrunA17_Chr2g0284331 37.931 87 54 0 2 88 445 531 1.27e-13 67.0
Msa0743950 MtrunA17_Chr1g0202451 30.400 125 85 1 1 125 678 800 1.57e-13 67.0
Msa0743950 MtrunA17_Chr7g0266961 36.905 84 53 0 2 85 468 551 1.72e-13 66.6
Msa0743950 MtrunA17_Chr2g0298181 29.839 124 87 0 3 126 481 604 1.80e-13 66.6
Msa0743950 MtrunA17_Chr2g0307101 36.538 104 66 0 15 118 422 525 1.83e-13 66.6
Msa0743950 MtrunA17_Chr2g0287621 31.507 146 83 4 1 145 256 385 1.90e-13 66.6
Msa0743950 MtrunA17_Chr2g0283441 33.333 87 57 1 2 87 434 520 2.55e-13 66.2
Msa0743950 MtrunA17_Chr7g0251141 29.310 116 82 0 1 116 370 485 2.58e-13 66.2
Msa0743950 MtrunA17_Chr8g0380101 29.508 122 86 0 1 122 400 521 2.79e-13 66.2
Msa0743950 MtrunA17_Chr7g0234661 32.941 85 57 0 3 87 797 881 3.07e-13 65.9
Msa0743950 MtrunA17_Chr7g0247091 36.782 87 55 0 2 88 467 553 3.11e-13 65.9
Msa0743950 MtrunA17_Chr5g0430251 33.654 104 62 1 1 104 683 779 4.15e-13 65.5
Msa0743950 MtrunA17_Chr1g0165451 30.693 101 70 0 2 102 346 446 4.43e-13 65.5
Msa0743950 MtrunA17_Chr4g0067001 28.058 139 98 2 6 142 390 528 4.95e-13 65.5
Msa0743950 MtrunA17_Chr7g0217701 35.632 87 56 0 2 88 430 516 6.36e-13 65.1
Msa0743950 MtrunA17_Chr8g0348641 29.545 88 62 0 18 105 545 632 6.89e-13 65.1
Msa0743950 MtrunA17_Chr4g0037471 29.457 129 90 1 1 128 468 596 7.40e-13 64.7
Msa0743950 MtrunA17_Chr5g0418441 30.469 128 89 0 2 129 664 791 9.51e-13 64.7
Msa0743950 MtrunA17_Chr8g0374211 31.461 89 61 0 3 91 409 497 1.19e-12 64.3
Msa0743950 MtrunA17_Chr5g0396341 30.233 86 60 0 3 88 678 763 1.90e-12 63.5
Msa0743950 MtrunA17_Chr1g0192601 35.227 88 57 0 3 90 400 487 3.32e-12 62.8
Msa0743950 MtrunA17_Chr2g0329731 30.864 81 55 1 3 83 132 211 4.76e-12 61.2
Msa0743950 MtrunA17_Chr5g0407181 35.632 87 56 0 2 88 476 562 5.60e-12 62.4
Msa0743950 MtrunA17_Chr3g0133921 39.189 74 45 0 1 74 611 684 6.48e-12 62.0
Msa0743950 MtrunA17_Chr3g0125601 27.586 116 81 1 3 115 476 591 9.05e-12 61.6
Msa0743950 MtrunA17_Chr1g0164381 36.585 82 52 0 1 82 485 566 1.66e-11 60.8
Msa0743950 MtrunA17_Chr8g0390071 30.337 89 62 0 2 90 358 446 2.21e-11 60.5
Msa0743950 MtrunA17_Chr1g0173941 37.838 74 45 1 14 87 667 739 2.83e-11 60.5
Msa0743950 MtrunA17_Chr5g0428021 30.070 143 92 3 3 144 555 690 2.96e-11 60.5
Msa0743950 MtrunA17_Chr5g0406941 38.158 76 47 0 12 87 678 753 4.17e-11 59.7
Msa0743950 MtrunA17_Chr5g0412041 33.333 78 52 0 10 87 408 485 5.44e-11 59.3
Msa0743950 MtrunA17_Chr3g0119391 32.184 87 59 0 2 88 399 485 5.56e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743950 AT5G13230.1 54.110 146 67 0 1 146 606 751 5.81e-49 168
Msa0743950 AT4G02750.1 44.138 145 81 0 3 147 568 712 3.53e-37 134
Msa0743950 AT3G24000.1 41.497 147 86 0 1 147 418 564 4.02e-36 131
Msa0743950 AT4G13650.1 39.716 141 85 0 2 142 850 990 3.67e-34 126
Msa0743950 AT1G16480.2 40.278 144 86 0 3 146 707 850 2.26e-32 121
Msa0743950 AT1G16480.1 40.278 144 86 0 3 146 724 867 2.42e-32 121
Msa0743950 AT5G16860.1 42.466 146 84 0 1 146 635 780 8.18e-32 119
Msa0743950 AT1G09410.1 39.189 148 89 1 1 147 489 636 1.03e-31 119
Msa0743950 AT3G13770.2 36.552 145 92 0 1 145 380 524 3.98e-31 117
Msa0743950 AT3G13770.1 36.552 145 92 0 1 145 413 557 4.14e-31 117
Msa0743950 AT3G26782.1 40.559 143 85 0 3 145 446 588 7.12e-31 116
Msa0743950 AT4G21065.2 40.278 144 86 0 4 147 250 393 1.04e-30 115
Msa0743950 AT5G46460.1 41.096 146 84 1 2 147 485 628 1.04e-30 116
Msa0743950 AT2G27610.1 39.437 142 86 0 1 142 652 793 1.11e-30 116
Msa0743950 AT3G22690.3 37.589 141 88 0 1 141 596 736 1.21e-30 116
Msa0743950 AT3G22690.2 37.589 141 88 0 1 141 627 767 1.39e-30 116
Msa0743950 AT3G22690.1 37.589 141 88 0 1 141 627 767 1.44e-30 116
Msa0743950 AT5G50990.1 38.356 146 87 1 2 147 323 465 1.63e-30 115
Msa0743950 AT1G56690.1 42.254 142 81 1 1 141 488 629 1.77e-30 115
Msa0743950 AT4G21065.1 40.278 144 86 0 4 147 383 526 1.79e-30 115
Msa0743950 AT3G57430.1 40.945 127 75 0 16 142 690 816 3.11e-30 115
Msa0743950 AT4G14820.1 39.073 151 91 1 1 150 501 651 3.40e-30 115
Msa0743950 AT5G52630.1 38.776 147 90 0 1 147 373 519 3.59e-30 114
Msa0743950 AT1G25360.1 39.855 138 83 0 2 139 575 712 5.00e-30 114
Msa0743950 AT2G22070.1 37.500 144 90 0 2 145 572 715 5.40e-30 114
Msa0743950 AT1G68930.2 38.776 147 90 0 1 147 502 648 5.41e-30 114
Msa0743950 AT1G68930.1 38.776 147 90 0 1 147 528 674 5.59e-30 114
Msa0743950 AT3G49142.1 40.278 144 86 0 2 145 467 610 1.29e-29 113
Msa0743950 AT5G40405.2 37.241 145 91 0 1 145 397 541 1.55e-29 112
Msa0743950 AT5G40405.1 37.241 145 91 0 1 145 397 541 1.55e-29 112
Msa0743950 AT4G33990.1 40.690 145 86 0 1 145 608 752 2.30e-29 112
Msa0743950 AT4G33990.2 40.690 145 86 0 1 145 601 745 2.34e-29 112
Msa0743950 AT5G09950.2 39.456 147 87 1 3 147 773 919 3.27e-29 112
Msa0743950 AT3G12770.1 40.288 139 83 0 7 145 485 623 3.34e-29 112
Msa0743950 AT1G20230.1 35.417 144 93 0 3 146 547 690 3.58e-29 112
Msa0743950 AT5G09950.3 39.456 147 87 1 3 147 779 925 3.75e-29 112
Msa0743950 AT5G09950.1 39.456 147 87 1 3 147 779 925 3.75e-29 112
Msa0743950 AT1G11290.1 41.958 143 82 1 3 145 597 738 3.95e-29 112
Msa0743950 AT5G04780.1 40.278 144 86 0 2 145 421 564 3.96e-29 111
Msa0743950 AT2G29760.1 39.041 146 88 1 1 145 522 667 5.24e-29 111
Msa0743950 AT2G41080.1 38.462 143 88 0 3 145 437 579 5.36e-29 111
Msa0743950 AT3G62890.1 38.356 146 90 0 2 147 359 504 1.67e-28 109
Msa0743950 AT5G48910.1 36.986 146 92 0 2 147 432 577 2.13e-28 109
Msa0743950 AT4G37170.1 37.241 145 91 0 3 147 478 622 2.24e-28 109
Msa0743950 AT2G13600.1 44.167 120 67 0 2 121 550 669 2.50e-28 109
Msa0743950 AT3G49170.1 36.842 133 84 0 1 133 631 763 5.07e-28 108
Msa0743950 AT3G08820.1 39.041 146 89 0 2 147 471 616 7.80e-28 108
Msa0743950 AT1G08070.2 40.741 135 80 0 11 145 432 566 8.66e-28 108
Msa0743950 AT1G31920.1 37.241 145 91 0 1 145 391 535 9.04e-28 107
Msa0743950 AT1G08070.1 40.741 135 80 0 11 145 536 670 9.32e-28 108
Msa0743950 AT2G03880.1 35.172 145 94 0 1 145 415 559 1.07e-27 107
Msa0743950 AT1G34160.2 37.956 137 85 0 11 147 326 462 1.12e-27 107
Msa0743950 AT1G34160.1 36.552 145 92 0 3 147 365 509 1.56e-27 107
Msa0743950 AT2G01510.1 40.426 141 84 0 2 142 370 510 2.35e-27 106
Msa0743950 AT2G01510.2 40.426 141 84 0 2 142 370 510 2.35e-27 106
Msa0743950 AT5G65570.1 36.496 137 86 1 10 145 532 668 2.89e-27 106
Msa0743950 AT4G16835.1 38.411 151 92 1 1 150 441 591 5.33e-27 105
Msa0743950 AT3G23330.1 34.483 145 94 1 3 147 502 645 6.05e-27 105
Msa0743950 AT3G47530.1 35.714 140 90 0 3 142 377 516 6.34e-27 105
Msa0743950 AT5G44230.2 40.141 142 84 1 1 141 344 485 6.59e-27 105
Msa0743950 AT3G63370.1 37.671 146 90 1 1 145 744 889 6.88e-27 105
Msa0743950 AT5G44230.1 40.141 142 84 1 1 141 441 582 8.02e-27 105
Msa0743950 AT3G23330.2 34.483 145 94 1 3 147 393 536 8.06e-27 105
Msa0743950 AT4G30700.1 37.324 142 89 0 1 142 577 718 8.32e-27 105
Msa0743950 AT1G15510.1 42.276 123 71 0 2 124 654 776 5.66e-26 102
Msa0743950 AT4G33170.1 34.483 145 95 0 3 147 777 921 8.88e-26 102
Msa0743950 AT4G18750.1 34.722 144 94 0 2 145 657 800 1.90e-25 101
Msa0743950 AT3G02010.1 34.694 147 95 1 2 147 610 756 2.73e-25 100
Msa0743950 AT5G66520.1 35.915 142 90 1 2 142 405 546 3.58e-25 100
Msa0743950 AT4G14850.1 37.143 140 88 0 2 141 470 609 4.96e-25 100
Msa0743950 AT4G37380.1 36.364 132 84 0 14 145 430 561 6.93e-25 99.8
Msa0743950 AT5G39680.1 36.429 140 89 0 8 147 502 641 1.13e-24 99.4
Msa0743950 AT3G49710.1 37.795 127 79 0 2 128 504 630 4.78e-24 97.4
Msa0743950 AT1G71490.1 40.000 125 74 1 3 126 541 665 6.77e-24 97.1
Msa0743950 AT1G56570.1 36.496 137 86 1 2 137 472 608 1.01e-23 96.3
Msa0743950 AT1G56570.2 36.496 137 86 1 2 137 472 608 1.01e-23 96.3
Msa0743950 AT1G59720.1 34.459 148 88 3 1 139 413 560 1.20e-23 96.3
Msa0743950 AT3G61170.1 34.247 146 96 0 2 147 553 698 1.26e-23 96.3
Msa0743950 AT5G40410.1 36.170 141 89 1 3 142 394 534 1.39e-23 95.9
Msa0743950 AT1G74630.1 38.298 141 86 1 3 142 429 569 1.64e-23 95.9
Msa0743950 AT1G74630.2 38.298 141 86 1 3 142 444 584 1.86e-23 95.5
Msa0743950 AT3G02330.1 41.905 105 60 1 1 104 760 864 1.19e-22 93.6
Msa0743950 AT3G15130.1 34.722 144 93 1 3 145 472 615 1.26e-22 93.2
Msa0743950 AT4G21300.1 35.772 123 79 0 4 126 703 825 1.29e-22 93.2
Msa0743950 AT2G02980.1 34.694 147 95 1 2 147 388 534 2.10e-22 92.8
Msa0743950 AT3G63370.2 40.909 110 65 0 10 119 753 862 2.94e-22 92.4
Msa0743950 AT5G59200.1 36.667 120 76 0 2 121 413 532 7.47e-22 90.9
Msa0743950 AT3G53360.1 36.538 104 66 0 2 105 631 734 1.94e-21 90.1
Msa0743950 AT3G53360.2 36.538 104 66 0 2 105 631 734 1.94e-21 90.1
Msa0743950 AT2G33760.1 33.083 133 89 0 15 147 383 515 4.44e-21 89.0
Msa0743950 AT3G50420.2 43.011 93 52 1 15 106 649 741 4.82e-21 89.0
Msa0743950 AT3G50420.1 43.011 93 52 1 15 106 674 766 4.84e-21 89.0
Msa0743950 AT4G14050.2 35.374 147 93 2 3 147 344 490 1.54e-20 87.4
Msa0743950 AT4G14050.1 35.374 147 93 2 3 147 397 543 2.14e-20 87.0
Msa0743950 AT2G45350.1 42.708 96 55 0 3 98 509 604 2.38e-20 86.7
Msa0743950 AT3G46790.1 29.577 142 100 0 2 143 443 584 2.84e-20 86.7
Msa0743950 AT5G13270.1 33.028 109 73 0 1 109 544 652 7.70e-20 85.5
Msa0743950 AT5G03800.1 30.556 144 100 0 4 147 683 826 9.10e-20 85.1
Msa0743950 AT3G11460.1 33.077 130 87 0 1 130 414 543 1.14e-19 84.7
Msa0743950 AT3G15930.1 32.117 137 93 0 2 138 526 662 1.17e-19 84.7
Msa0743950 AT5G39350.1 42.529 87 50 0 2 88 582 668 1.33e-19 84.7
Msa0743950 AT1G18485.1 31.429 140 96 0 6 145 760 899 1.61e-19 84.3
Msa0743950 AT3G05340.1 31.159 138 95 0 2 139 515 652 1.63e-19 84.3
Msa0743950 AT3G03580.1 30.556 144 100 0 2 145 667 810 2.08e-19 84.0
Msa0743950 AT3G13880.1 35.780 109 70 0 9 117 624 732 3.09e-19 83.6
Msa0743950 AT3G14330.1 28.966 145 96 2 1 141 494 635 3.19e-19 83.6
Msa0743950 AT5G08490.8 36.893 103 65 0 2 104 725 827 4.58e-19 83.2
Msa0743950 AT5G08490.3 36.893 103 65 0 2 104 725 827 4.58e-19 83.2
Msa0743950 AT5G08490.1 36.893 103 65 0 2 104 725 827 4.58e-19 83.2
Msa0743950 AT5G08490.4 36.893 103 65 0 2 104 690 792 4.79e-19 83.2
Msa0743950 AT1G50270.1 36.275 102 65 0 3 104 465 566 1.75e-18 81.3
Msa0743950 AT5G06540.1 33.577 137 90 1 10 145 415 551 1.80e-18 81.3
Msa0743950 AT2G21090.1 35.922 103 66 0 1 103 469 571 2.06e-18 81.3
Msa0743950 AT3G47840.1 37.168 113 71 0 2 114 569 681 2.83e-18 80.9
Msa0743950 AT3G14730.1 38.235 102 63 0 8 109 531 632 2.88e-18 80.9
Msa0743950 AT4G01030.1 27.972 143 103 0 3 145 555 697 3.79e-18 80.5
Msa0743950 AT5G15340.1 31.724 145 97 1 3 145 408 552 6.88e-18 79.7
Msa0743950 AT2G20540.2 33.333 126 83 1 7 132 374 498 1.04e-17 79.0
Msa0743950 AT3G09040.2 34.746 118 77 0 10 127 924 1041 1.18e-17 79.0
Msa0743950 AT3G09040.3 34.746 118 77 0 10 127 924 1041 1.18e-17 79.0
Msa0743950 AT2G20540.1 33.333 126 83 1 7 132 404 528 1.22e-17 79.0
Msa0743950 AT3G09040.1 34.746 118 77 0 10 127 899 1016 1.24e-17 79.0
Msa0743950 AT3G09040.4 34.746 118 77 0 10 127 899 1016 1.24e-17 79.0
Msa0743950 AT3G29230.1 35.345 116 75 0 1 116 472 587 2.06e-17 78.2
Msa0743950 AT4G32430.2 33.898 118 73 1 2 114 500 617 2.18e-17 78.2
Msa0743950 AT4G32430.1 33.898 118 73 1 2 114 632 749 2.24e-17 78.2
Msa0743950 AT4G19191.1 30.328 122 85 0 1 122 515 636 2.53e-17 78.2
Msa0743950 AT1G74400.1 33.673 98 62 1 2 99 333 427 2.79e-17 77.8
Msa0743950 AT2G22410.1 33.607 122 81 0 2 123 547 668 8.36e-17 76.6
Msa0743950 AT1G62260.1 38.889 90 55 0 1 90 566 655 1.71e-16 75.9
Msa0743950 AT2G44880.1 35.294 102 66 0 3 104 431 532 1.88e-16 75.5
Msa0743950 AT2G44880.5 35.294 102 66 0 3 104 471 572 2.02e-16 75.5
Msa0743950 AT2G44880.4 35.294 102 66 0 3 104 472 573 2.04e-16 75.5
Msa0743950 AT2G44880.3 35.294 102 66 0 3 104 472 573 2.04e-16 75.5
Msa0743950 AT2G44880.2 35.294 102 66 0 3 104 474 575 2.05e-16 75.5
Msa0743950 AT2G37320.1 33.333 114 70 1 1 114 378 485 2.06e-16 75.5
Msa0743950 AT2G44880.6 35.294 102 66 0 3 104 470 571 2.06e-16 75.5
Msa0743950 AT1G05750.1 31.496 127 86 1 1 126 363 489 2.45e-16 75.1
Msa0743950 AT1G05750.2 31.496 127 86 1 1 126 363 489 2.45e-16 75.1
Msa0743950 AT4G39530.1 36.275 102 65 0 2 103 712 813 3.01e-16 75.1
Msa0743950 AT2G33680.1 31.452 124 85 0 15 138 594 717 3.23e-16 75.1
Msa0743950 AT2G33680.8 31.452 124 85 0 15 138 594 717 3.23e-16 75.1
Msa0743950 AT2G33680.7 31.452 124 85 0 15 138 594 717 3.23e-16 75.1
Msa0743950 AT2G33680.6 31.452 124 85 0 15 138 649 772 3.26e-16 75.1
Msa0743950 AT2G35030.1 34.545 110 72 0 12 121 501 610 3.51e-16 74.7
Msa0743950 AT2G36980.1 35.514 107 69 0 16 122 513 619 5.36e-16 74.3
Msa0743950 AT4G35130.1 34.314 102 67 0 2 103 589 690 5.62e-16 74.3
Msa0743950 AT3G28660.1 33.058 121 77 1 1 117 377 497 5.91e-16 73.9
Msa0743950 AT2G36980.2 35.514 107 69 0 16 122 504 610 5.95e-16 74.3
Msa0743950 AT2G36980.3 35.514 107 69 0 16 122 361 467 6.30e-16 73.9
Msa0743950 AT2G37310.1 27.778 126 91 0 1 126 523 648 7.51e-16 73.9
Msa0743950 AT1G06143.1 29.457 129 90 1 1 128 444 572 8.40e-16 73.6
Msa0743950 AT5G37570.1 37.209 86 54 0 2 87 463 548 8.65e-16 73.6
Msa0743950 AT5G37570.2 37.209 86 54 0 2 87 463 548 8.65e-16 73.6
Msa0743950 AT5G42450.2 33.333 99 66 0 2 100 306 404 8.92e-16 73.6
Msa0743950 AT5G42450.1 33.333 99 66 0 2 100 390 488 9.75e-16 73.6
Msa0743950 AT5G08510.1 31.667 120 81 1 3 121 375 494 1.08e-15 73.6
Msa0743950 AT3G56550.2 33.929 112 74 0 14 125 378 489 1.15e-15 73.2
Msa0743950 AT3G56550.1 33.929 112 74 0 14 125 378 489 1.15e-15 73.2
Msa0743950 AT5G55740.1 32.203 118 78 1 1 116 704 821 1.17e-15 73.6
Msa0743950 AT5G15300.1 39.535 86 52 0 3 88 438 523 1.33e-15 73.2
Msa0743950 AT1G04840.1 29.787 141 99 0 2 142 451 591 1.55e-15 73.2
Msa0743950 AT2G33680.5 30.709 127 88 0 15 141 669 795 1.61e-15 72.8
Msa0743950 AT2G33680.3 30.709 127 88 0 15 141 658 784 1.80e-15 72.8
Msa0743950 AT2G33680.2 30.709 127 88 0 15 141 658 784 1.80e-15 72.8
Msa0743950 AT2G33680.4 30.709 127 88 0 15 141 658 784 1.80e-15 72.8
Msa0743950 AT3G05240.1 42.045 88 51 0 2 89 476 563 1.99e-15 72.8
Msa0743950 AT3G01580.1 28.205 117 84 0 1 117 524 640 2.07e-15 72.8
Msa0743950 AT1G17630.2 34.058 138 87 1 2 139 592 725 2.95e-15 72.0
Msa0743950 AT1G17630.1 34.058 138 87 1 2 139 592 725 2.95e-15 72.0
Msa0743950 AT5G50390.1 29.252 147 100 2 1 143 482 628 3.13e-15 72.0
Msa0743950 AT4G22760.1 37.079 89 56 0 2 90 488 576 4.42e-15 71.6
Msa0743950 AT3G22150.2 31.250 128 86 1 15 140 693 820 6.79e-15 71.2
Msa0743950 AT3G22150.1 31.250 128 86 1 15 140 693 820 6.79e-15 71.2
Msa0743950 AT3G28640.1 33.058 121 77 1 1 117 377 497 7.36e-15 70.9
Msa0743950 AT1G71420.1 31.250 128 87 1 2 128 524 651 1.10e-14 70.5
Msa0743950 AT1G13410.1 31.429 105 70 2 1 104 346 449 1.13e-14 70.5
Msa0743950 AT4G16470.1 41.573 89 52 0 15 103 380 468 1.29e-14 70.1
Msa0743950 AT3G25060.1 33.333 108 72 0 15 122 488 595 1.31e-14 70.5
Msa0743950 AT5G56310.1 28.319 113 81 0 2 114 408 520 1.46e-14 70.1
Msa0743950 AT1G74600.1 37.647 85 53 0 3 87 811 895 3.64e-14 68.9
Msa0743950 AT5G43790.1 34.146 82 54 0 4 85 376 457 5.93e-14 68.2
Msa0743950 AT4G20770.1 34.884 86 56 0 2 87 677 762 7.16e-14 68.2
Msa0743950 AT1G53600.1 30.769 117 81 0 3 119 597 713 1.50e-13 67.4
Msa0743950 AT1G53600.2 30.769 117 81 0 3 119 597 713 1.50e-13 67.4
Msa0743950 AT1G77170.1 37.500 88 55 0 2 89 378 465 2.15e-13 66.6
Msa0743950 AT5G08305.1 32.773 119 76 1 3 117 401 519 2.43e-13 66.6
Msa0743950 AT1G31430.2 35.922 103 64 1 13 113 451 553 6.08e-13 65.5
Msa0743950 AT1G31430.1 35.922 103 64 1 13 113 451 553 6.08e-13 65.5
Msa0743950 AT2G36730.1 34.000 100 63 1 3 99 372 471 9.59e-13 65.1
Msa0743950 AT1G06140.1 40.230 87 52 0 2 88 470 556 1.35e-12 64.3
Msa0743950 AT1G09190.1 34.884 86 56 0 2 87 394 479 1.44e-12 64.3
Msa0743950 AT3G25970.1 30.000 120 84 0 2 121 567 686 2.22e-12 63.9
Msa0743950 AT3G04750.1 33.000 100 66 1 6 104 531 630 2.86e-12 63.5
Msa0743950 AT1G33350.2 31.373 102 70 0 15 116 434 535 3.00e-12 63.5
Msa0743950 AT1G33350.1 31.373 102 70 0 15 116 434 535 3.00e-12 63.5
Msa0743950 AT4G15720.1 24.476 143 102 1 6 142 400 542 8.30e-12 62.4
Msa0743950 AT1G28690.1 30.864 81 55 1 7 86 436 516 9.38e-12 62.0
Msa0743950 AT5G59600.1 38.636 88 54 0 2 89 446 533 1.12e-11 62.0
Msa0743950 AT2G04860.1 34.483 87 57 0 1 87 606 692 1.17e-11 62.0
Msa0743950 AT3G16610.1 36.047 86 54 1 3 88 569 653 2.19e-11 61.2
Msa0743950 AT1G77010.1 30.682 88 61 0 1 88 607 694 2.24e-11 60.8
Msa0743950 AT4G08210.1 38.372 86 52 1 2 87 601 685 8.92e-11 59.3
Msa0743950 AT5G19020.1 37.209 86 54 0 2 87 599 684 9.63e-11 59.3

Find 32 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATAACACTTGGCTGATA+TGG 0.232565 5_1:+64607598 None:intergenic
GATGAAGCAATGAAACTCAT+TGG 0.386505 5_1:-64607628 None:intergenic
TATTCACAAGAACATTGATC+TGG 0.393008 5_1:-64607548 Msa0743950:CDS
TCCATATCAGCCAAGTGTTA+TGG 0.425429 5_1:-64607599 Msa0743950:CDS
AGAAGGAACCTGGCTTAAGC+TGG 0.448880 5_1:-64607384 Msa0743950:CDS
TTATATGTGCAATGCTTGAA+TGG 0.453343 5_1:-64607297 Msa0743950:CDS
GTATGCCACTGCAGGGAGAT+GGG 0.476096 5_1:-64607452 Msa0743950:CDS
AACAAGAAAACCAGGGATGC+AGG 0.476361 5_1:-64607271 Msa0743950:CDS
ATCCATCTCAAGTACATGTT+GGG 0.478691 5_1:+64607513 None:intergenic
TTCTCAACCCAGCTTAAGCC+AGG 0.482872 5_1:+64607376 None:intergenic
GCACATATAAGTTTAATGTC+AGG 0.491158 5_1:+64607310 None:intergenic
GAGATGGATCTGCATGTTGA+TGG 0.495960 5_1:-64607499 Msa0743950:CDS
TGTATGCCACTGCAGGGAGA+TGG 0.497230 5_1:-64607453 Msa0743950:CDS
TCAAACGTGTATGCCACTGC+AGG 0.515874 5_1:-64607460 Msa0743950:CDS
AGAAACATATCCTGCATCCC+TGG 0.530096 5_1:+64607261 None:intergenic
ACAAGAACATTGATCTGGGA+AGG 0.531600 5_1:-64607543 Msa0743950:CDS
ATCTCCCCATCTCCCTGCAG+TGG 0.539049 5_1:+64607447 None:intergenic
CAAGAACATTGATCTGGGAA+GGG 0.540187 5_1:-64607542 Msa0743950:CDS
GATCCATCTCAAGTACATGT+TGG 0.554659 5_1:+64607512 None:intergenic
TGCAGGGAGATGGGGAGATG+TGG 0.562110 5_1:-64607443 Msa0743950:CDS
ATTCACAAGAACATTGATCT+GGG 0.571206 5_1:-64607547 Msa0743950:CDS
TGCCCAACATGTACTTGAGA+TGG 0.575084 5_1:-64607515 Msa0743950:CDS
GCACGCCACACCATAACACT+TGG 0.585455 5_1:+64607589 None:intergenic
AATGGTTGAACAAGAAAACC+AGG 0.586345 5_1:-64607279 Msa0743950:CDS
GAAGGAACCTGGCTTAAGCT+GGG 0.595270 5_1:-64607383 Msa0743950:CDS
ACACGTTTGACAGAAGTACA+TGG 0.599688 5_1:+64607473 None:intergenic
TATGCCACTGCAGGGAGATG+GGG 0.624716 5_1:-64607451 Msa0743950:CDS
ATCAGCCAAGTGTTATGGTG+TGG 0.633706 5_1:-64607594 Msa0743950:CDS
TAAAACAGTGAACAACACCT+TGG 0.636439 5_1:+64607353 None:intergenic
CAAACGTGTATGCCACTGCA+GGG 0.645794 5_1:-64607459 Msa0743950:CDS
TTAAGCTGGGTTGAGAACCA+AGG 0.687132 5_1:-64607370 Msa0743950:CDS
ATGGTTGAACAAGAAAACCA+GGG 0.715657 5_1:-64607278 Msa0743950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACAAAAGAAAAAAGTGAAGA+AGG - chr5_1:64607404-64607423 Msa0743950:CDS 25.0%
TATTCACAAGAACATTGATC+TGG - chr5_1:64607257-64607276 Msa0743950:CDS 30.0%
ATTCACAAGAACATTGATCT+GGG - chr5_1:64607258-64607277 Msa0743950:CDS 30.0%
GCACATATAAGTTTAATGTC+AGG + chr5_1:64607498-64607517 None:intergenic 30.0%
TTATATGTGCAATGCTTGAA+TGG - chr5_1:64607508-64607527 Msa0743950:CDS 30.0%
ATCCATCTCAAGTACATGTT+GGG + chr5_1:64607295-64607314 None:intergenic 35.0%
AAAAAAGTGAAGAAGGAACC+TGG - chr5_1:64607411-64607430 Msa0743950:CDS 35.0%
TAAAACAGTGAACAACACCT+TGG + chr5_1:64607455-64607474 None:intergenic 35.0%
!!! TGTTGTTCACTGTTTTAGTG+TGG - chr5_1:64607458-64607477 Msa0743950:CDS 35.0%
!!! GTTGTTCACTGTTTTAGTGT+GGG - chr5_1:64607459-64607478 Msa0743950:CDS 35.0%
!!! TTGTTCACTGTTTTAGTGTG+GGG - chr5_1:64607460-64607479 Msa0743950:CDS 35.0%
AATGGTTGAACAAGAAAACC+AGG - chr5_1:64607526-64607545 Msa0743950:CDS 35.0%
ATGGTTGAACAAGAAAACCA+GGG - chr5_1:64607527-64607546 Msa0743950:CDS 35.0%
AAGATGATGAAAAAGAGCGA+CGG - chr5_1:64607595-64607614 Msa0743950:CDS 35.0%
TCCATATCAGCCAAGTGTTA+TGG - chr5_1:64607206-64607225 Msa0743950:CDS 40.0%
ACCATAACACTTGGCTGATA+TGG + chr5_1:64607210-64607229 None:intergenic 40.0%
ACAAGAACATTGATCTGGGA+AGG - chr5_1:64607262-64607281 Msa0743950:CDS 40.0%
CAAGAACATTGATCTGGGAA+GGG - chr5_1:64607263-64607282 Msa0743950:CDS 40.0%
GATCCATCTCAAGTACATGT+TGG + chr5_1:64607296-64607315 None:intergenic 40.0%
! ACACGTTTGACAGAAGTACA+TGG + chr5_1:64607335-64607354 None:intergenic 40.0%
!!! TGTTCACTGTTTTAGTGTGG+GGG - chr5_1:64607461-64607480 Msa0743950:CDS 40.0%
!!! CAATGCTATTTTGCTTGACG+TGG - chr5_1:64607572-64607591 Msa0743950:CDS 40.0%
ATCAGCCAAGTGTTATGGTG+TGG - chr5_1:64607211-64607230 Msa0743950:CDS 45.0%
TGCCCAACATGTACTTGAGA+TGG - chr5_1:64607290-64607309 Msa0743950:CDS 45.0%
GAGATGGATCTGCATGTTGA+TGG - chr5_1:64607306-64607325 Msa0743950:CDS 45.0%
! TTAAGCTGGGTTGAGAACCA+AGG - chr5_1:64607435-64607454 Msa0743950:CDS 45.0%
AACAAGAAAACCAGGGATGC+AGG - chr5_1:64607534-64607553 Msa0743950:CDS 45.0%
AGAAACATATCCTGCATCCC+TGG + chr5_1:64607547-64607566 None:intergenic 45.0%
ATGAAAAAGAGCGACGGTTG+TGG - chr5_1:64607601-64607620 Msa0743950:CDS 45.0%
TCAAACGTGTATGCCACTGC+AGG - chr5_1:64607345-64607364 Msa0743950:CDS 50.0%
CAAACGTGTATGCCACTGCA+GGG - chr5_1:64607346-64607365 Msa0743950:CDS 50.0%
! GGGGAGATGTGGCTTTTGTT+AGG - chr5_1:64607373-64607392 Msa0743950:CDS 50.0%
AGAAGGAACCTGGCTTAAGC+TGG - chr5_1:64607421-64607440 Msa0743950:CDS 50.0%
GAAGGAACCTGGCTTAAGCT+GGG - chr5_1:64607422-64607441 Msa0743950:CDS 50.0%
TTCTCAACCCAGCTTAAGCC+AGG + chr5_1:64607432-64607451 None:intergenic 50.0%
GCACGCCACACCATAACACT+TGG + chr5_1:64607219-64607238 None:intergenic 55.0%
TGTATGCCACTGCAGGGAGA+TGG - chr5_1:64607352-64607371 Msa0743950:CDS 55.0%
GTATGCCACTGCAGGGAGAT+GGG - chr5_1:64607353-64607372 Msa0743950:CDS 55.0%
TATGCCACTGCAGGGAGATG+GGG - chr5_1:64607354-64607373 Msa0743950:CDS 55.0%
ATCTCCCCATCTCCCTGCAG+TGG + chr5_1:64607361-64607380 None:intergenic 60.0%
TGCAGGGAGATGGGGAGATG+TGG - chr5_1:64607362-64607381 Msa0743950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64607186 64607641 64607186 ID=Msa0743950;Name=Msa0743950
chr5_1 mRNA 64607186 64607641 64607186 ID=Msa0743950-mRNA-1;Parent=Msa0743950;Name=Msa0743950-mRNA-1;_AED=0.46;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|151
chr5_1 exon 64607186 64607641 64607186 ID=Msa0743950-mRNA-1:exon:19137;Parent=Msa0743950-mRNA-1
chr5_1 CDS 64607186 64607641 64607186 ID=Msa0743950-mRNA-1:cds;Parent=Msa0743950-mRNA-1
Gene Sequence

>Msa0743950

ATGAAACTCATTGGAGAAATTCCATATCAGCCAAGTGTTATGGTGTGGCGTGCATTGCTTGTTGCGTGCGTTATTCACAAGAACATTGATCTGGGAAGGGTTTGTGCCCAACATGTACTTGAGATGGATCTGCATGTTGATGGAAGCCATGTACTTCTGTCAAACGTGTATGCCACTGCAGGGAGATGGGGAGATGTGGCTTTTGTTAGGAAAAATATACAAAAGAAAAAAGTGAAGAAGGAACCTGGCTTAAGCTGGGTTGAGAACCAAGGTGTTGTTCACTGTTTTAGTGTGGGGGACACTATGCATCCTGACATTAAACTTATATGTGCAATGCTTGAATGGTTGAACAAGAAAACCAGGGATGCAGGATATGTTTCTGATTGCAATGCTATTTTGCTTGACGTGGAAGATGATGAAAAAGAGCGACGGTTGTGGTACATAGCAAAAGACTAG
Protein sequence

>Msa0743950

MKLIGEIPYQPSVMVWRALLVACVIHKNIDLGRVCAQHVLEMDLHVDGSHVLLSNVYATAGRWGDVAFVRKNIQKKKVKKEPGLSWVENQGVVHCFSVGDTMHPDIKLICAMLEWLNKKTRDAGYVSDCNAILLDVEDDEKERRLWYIAKD*