AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0255850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255850 MtrunA17_Chr2g0317021 98.587 283 4 0 1 283 51 333 0.0 571
Msa0255850 MtrunA17_Chr8g0360351 79.505 283 57 1 1 283 1 282 3.47e-164 456
Msa0255850 MtrunA17_Chr4g0050381 62.547 267 99 1 17 283 12 277 1.20e-117 338
Msa0255850 MtrunA17_Chr2g0279151 61.423 267 102 1 17 283 16 281 7.96e-114 329
Msa0255850 MtrunA17_Chr3g0115851 60.902 266 103 1 19 283 17 282 2.71e-113 328
Msa0255850 MtrunA17_Chr5g0426141 61.132 265 102 1 19 283 19 282 1.27e-111 323
Msa0255850 MtrunA17_Chr4g0051661 56.115 278 114 2 3 280 126 395 4.37e-108 318
Msa0255850 MtrunA17_Chr1g0150451 44.528 265 139 6 21 282 64 323 1.37e-65 208
Msa0255850 MtrunA17_Chr1g0212961 42.857 266 139 7 23 282 79 337 1.14e-64 206
Msa0255850 MtrunA17_Chr3g0136711 43.396 265 142 6 21 282 21 280 2.49e-63 201
Msa0255850 MtrunA17_Chr3g0126511 42.424 264 144 6 23 283 83 341 6.72e-56 184
Msa0255850 MtrunA17_Chr3g0105371 41.085 258 136 8 37 283 87 339 1.91e-45 156
Msa0255850 MtrunA17_Chr5g0430481 39.147 258 141 8 36 283 124 375 4.17e-43 151
Msa0255850 MtrunA17_Chr3g0105351 40.154 259 137 9 37 283 63 315 2.44e-42 147
Msa0255850 MtrunA17_Chr1g0187481 34.630 257 140 8 34 282 41 277 1.81e-37 134
Msa0255850 MtrunA17_Chr5g0407161 34.746 236 135 7 58 280 114 343 9.62e-35 129
Msa0255850 MtrunA17_Chr1g0171571 35.606 264 152 8 34 283 386 645 1.18e-33 129
Msa0255850 MtrunA17_Chr4g0065141 32.210 267 150 9 41 283 92 351 2.84e-33 125
Msa0255850 MtrunA17_Chr1g0166481 37.109 256 131 6 34 282 41 273 3.10e-33 122
Msa0255850 MtrunA17_Chr3g0138281 34.241 257 142 9 49 283 95 346 1.23e-32 123
Msa0255850 MtrunA17_Chr4g0070871 35.636 275 129 9 49 283 238 504 6.25e-32 123
Msa0255850 MtrunA17_Chr3g0135961 33.582 268 132 7 58 283 277 540 3.06e-31 122
Msa0255850 MtrunA17_Chr3g0112291 32.890 301 158 9 23 283 80 376 5.27e-31 119
Msa0255850 MtrunA17_Chr3g0144111 35.398 226 107 8 67 280 27 225 1.07e-30 115
Msa0255850 MtrunA17_Chr2g0293811 31.092 238 136 7 67 282 100 331 6.53e-30 115
Msa0255850 MtrunA17_Chr1g0194191 33.054 239 132 9 66 282 117 349 1.82e-29 115
Msa0255850 MtrunA17_Chr5g0396731 32.281 285 152 9 35 283 72 351 3.80e-29 113
Msa0255850 MtrunA17_Chr8g0389921 32.780 241 135 6 67 283 198 435 2.94e-28 112
Msa0255850 MtrunA17_Chr1g0150781 32.143 308 144 10 37 283 241 544 3.02e-28 113
Msa0255850 MtrunA17_Chr6g0483411 31.835 267 144 10 47 280 55 316 7.18e-28 109
Msa0255850 MtrunA17_Chr2g0299981 33.028 327 143 13 29 283 214 536 2.34e-27 110
Msa0255850 MtrunA17_Chr4g0066371 29.496 278 151 10 48 283 67 341 2.16e-26 106
Msa0255850 MtrunA17_Chr5g0435721 33.948 271 150 9 36 282 193 458 2.78e-26 107
Msa0255850 MtrunA17_Chr1g0192421 35.878 262 118 12 67 280 89 348 3.32e-26 105
Msa0255850 MtrunA17_Chr1g0158781 34.866 261 141 8 48 283 124 380 2.80e-25 103
Msa0255850 MtrunA17_Chr7g0263281 30.216 278 129 9 67 282 71 345 3.36e-25 103
Msa0255850 MtrunA17_Chr7g0272061 33.091 275 127 13 64 282 88 361 6.95e-25 102
Msa0255850 MtrunA17_Chr4g0001761 44.776 134 57 4 127 249 160 287 1.80e-24 100
Msa0255850 MtrunA17_Chr3g0127091 28.819 288 144 10 47 282 71 349 2.10e-24 101
Msa0255850 MtrunA17_Chr7g0256771 28.720 289 150 10 9 251 15 293 4.02e-24 99.4
Msa0255850 MtrunA17_Chr1g0211251 27.660 329 145 13 32 282 42 355 5.98e-23 97.1
Msa0255850 MtrunA17_Chr1g0153671 29.707 239 144 9 63 282 61 294 1.88e-22 96.3
Msa0255850 MtrunA17_Chr2g0295401 34.340 265 118 16 67 280 92 351 1.12e-21 93.2
Msa0255850 MtrunA17_Chr7g0221691 38.743 191 92 9 99 267 199 386 1.25e-21 94.0
Msa0255850 MtrunA17_Chr7g0271971 31.518 257 147 11 50 282 46 297 1.69e-21 93.6
Msa0255850 MtrunA17_Chr3g0136811 31.638 177 95 5 127 283 160 330 1.84e-21 92.8
Msa0255850 MtrunA17_Chr4g0004971 39.444 180 85 8 126 282 165 343 2.21e-21 92.4
Msa0255850 MtrunA17_Chr7g0225501 35.417 240 129 12 65 282 84 319 3.35e-21 92.8
Msa0255850 MtrunA17_Chr8g0371321 30.241 291 127 13 60 282 71 353 3.59e-21 92.0
Msa0255850 MtrunA17_Chr7g0256751 29.329 283 125 10 67 280 69 345 4.38e-21 92.4
Msa0255850 MtrunA17_Chr1g0181901 27.985 268 144 9 30 251 35 299 7.44e-21 91.3
Msa0255850 MtrunA17_Chr4g0067711 38.547 179 86 9 125 280 173 350 1.72e-20 90.1
Msa0255850 MtrunA17_Chr3g0089721 29.096 354 155 15 7 282 11 346 1.76e-20 90.1
Msa0255850 MtrunA17_Chr3g0089711 28.814 354 156 15 7 282 11 346 5.47e-20 88.6
Msa0255850 MtrunA17_Chr1g0209451 28.125 256 157 8 50 282 46 297 5.66e-20 89.0
Msa0255850 MtrunA17_Chr3g0133801 28.936 235 143 9 67 282 66 295 7.56e-20 88.6
Msa0255850 MtrunA17_Chr6g0486661 29.344 259 139 11 67 282 124 381 8.34e-20 89.4
Msa0255850 MtrunA17_Chr1g0213351 29.514 288 133 10 60 282 72 354 9.12e-20 88.2
Msa0255850 MtrunA17_Chr7g0249421 35.500 200 104 8 107 282 186 384 1.25e-19 88.6
Msa0255850 MtrunA17_Chr7g0250061 28.571 280 127 12 67 280 76 348 1.97e-19 87.0
Msa0255850 MtrunA17_Chr7g0243571 39.744 156 78 6 127 267 188 342 2.07e-19 87.4
Msa0255850 MtrunA17_Chr2g0286951 27.000 300 170 12 31 283 45 342 2.33e-19 87.4
Msa0255850 MtrunA17_Chr1g0192471 29.961 257 151 11 50 282 46 297 4.74e-19 86.3
Msa0255850 MtrunA17_Chr1g0150071 32.203 177 94 6 127 283 160 330 1.13e-18 84.7
Msa0255850 MtrunA17_Chr8g0342431 37.278 169 83 7 134 280 203 370 8.85e-18 82.4
Msa0255850 MtrunA17_Chr2g0294291 29.268 287 138 12 59 282 66 350 1.50e-17 81.6
Msa0255850 MtrunA17_Chr4g0063111 29.213 267 140 11 49 276 60 316 1.65e-17 82.4
Msa0255850 MtrunA17_Chr1g0207571 27.857 280 129 10 70 282 64 337 1.56e-16 79.0
Msa0255850 MtrunA17_Chr4g0022171 34.637 179 93 7 127 282 193 370 4.19e-16 77.8
Msa0255850 MtrunA17_Chr2g0295991 27.660 329 131 12 56 282 153 476 5.70e-16 77.8
Msa0255850 MtrunA17_Chr2g0324061 36.313 179 90 7 127 282 186 363 2.06e-15 75.9
Msa0255850 MtrunA17_Chr1g0175381 25.000 316 161 11 30 280 46 350 2.97e-15 75.1
Msa0255850 MtrunA17_Chr7g0238501 25.926 297 142 11 60 283 256 547 4.86e-15 75.1
Msa0255850 MtrunA17_Chr1g0151781 30.500 200 99 9 69 244 100 283 6.84e-15 73.9
Msa0255850 MtrunA17_Chr3g0089691 32.301 226 75 10 123 282 47 260 9.68e-14 70.1
Msa0255850 MtrunA17_Chr4g0067301 26.686 341 132 13 56 282 151 487 3.55e-13 69.3
Msa0255850 MtrunA17_Chr4g0068971 34.426 122 65 3 171 282 115 231 3.68e-13 68.2
Msa0255850 MtrunA17_Chr1g0185141 27.315 216 96 9 127 283 226 439 3.96e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0255850 AT3G15260.2 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa0255850 AT3G15260.1 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa0255850 AT4G28400.1 68.198 283 90 0 1 283 1 283 1.47e-140 397
Msa0255850 AT2G20630.1 65.018 283 95 1 1 283 1 279 1.04e-134 382
Msa0255850 AT2G20630.2 65.233 279 93 1 1 279 1 275 1.76e-132 377
Msa0255850 AT4G28400.3 69.231 260 80 0 24 283 2 261 8.81e-132 374
Msa0255850 AT4G28400.2 67.782 239 77 0 1 239 1 239 1.16e-118 340
Msa0255850 AT1G22280.1 59.200 250 102 0 34 283 32 281 4.82e-107 312
Msa0255850 AT1G34750.2 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0255850 AT1G34750.1 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0255850 AT1G34750.3 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0255850 AT1G22280.3 57.812 256 102 1 34 283 32 287 1.37e-104 306
Msa0255850 AT2G34740.1 56.522 253 106 3 32 282 84 334 6.30e-97 288
Msa0255850 AT1G78200.1 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0255850 AT1G78200.3 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0255850 AT1G78200.2 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0255850 AT1G34750.4 55.466 247 98 3 10 247 1 244 7.94e-88 262
Msa0255850 AT1G78200.5 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa0255850 AT1G78200.4 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa0255850 AT2G34740.3 58.095 210 84 3 36 243 84 291 3.33e-84 255
Msa0255850 AT2G34740.2 58.095 210 84 3 36 243 102 309 3.91e-84 255
Msa0255850 AT5G10740.1 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa0255850 AT5G10740.2 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa0255850 AT5G24940.1 43.774 265 141 6 21 282 20 279 1.74e-64 209
Msa0255850 AT1G22280.2 61.688 154 59 0 34 187 32 185 2.00e-64 201
Msa0255850 AT4G31750.2 43.019 265 143 6 21 282 20 279 6.67e-64 203
Msa0255850 AT4G31750.1 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa0255850 AT4G31750.3 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa0255850 AT1G43900.1 41.241 274 146 8 20 283 101 369 1.80e-60 196
Msa0255850 AT5G53140.1 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa0255850 AT5G53140.2 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa0255850 AT2G30020.1 42.205 263 128 10 37 283 139 393 5.75e-46 159
Msa0255850 AT1G07160.1 38.298 282 149 9 18 282 103 376 1.31e-44 155
Msa0255850 AT2G40180.1 36.364 264 146 8 36 283 129 386 1.07e-40 145
Msa0255850 AT1G67820.2 39.336 211 118 6 60 265 108 313 8.24e-36 132
Msa0255850 AT1G67820.1 39.336 211 118 6 60 265 144 349 2.22e-35 132
Msa0255850 AT2G25620.1 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa0255850 AT2G25620.2 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa0255850 AT3G51470.2 33.628 226 132 6 67 280 62 281 2.87e-34 126
Msa0255850 AT3G51470.1 33.480 227 133 6 66 280 105 325 9.48e-34 126
Msa0255850 AT2G33700.1 35.470 234 132 7 60 280 115 342 1.60e-33 126
Msa0255850 AT3G23360.1 31.225 253 140 6 34 282 37 259 6.80e-32 119
Msa0255850 AT1G48040.1 34.310 239 127 8 66 280 115 347 2.37e-31 120
Msa0255850 AT3G16800.4 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa0255850 AT3G16800.6 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa0255850 AT3G17250.1 32.231 242 132 8 65 280 156 391 1.69e-30 118
Msa0255850 AT5G57050.2 34.098 305 139 14 36 283 73 372 1.86e-30 118
Msa0255850 AT3G16800.2 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0255850 AT3G16800.1 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0255850 AT3G16800.3 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0255850 AT5G57050.1 34.098 305 139 14 36 283 113 412 2.88e-30 118
Msa0255850 AT4G08260.1 34.286 245 115 10 49 283 1 209 2.89e-30 113
Msa0255850 AT4G26080.1 34.768 302 136 14 36 283 129 423 3.71e-30 118
Msa0255850 AT2G29380.1 34.256 289 144 13 36 283 78 361 3.87e-30 116
Msa0255850 AT3G62260.3 33.333 237 131 8 66 280 26 257 1.22e-29 114
Msa0255850 AT3G62260.1 32.780 241 127 8 66 280 115 346 8.16e-29 113
Msa0255850 AT3G62260.2 32.780 241 127 8 66 280 116 347 8.36e-29 113
Msa0255850 AT1G72770.4 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0255850 AT1G72770.1 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0255850 AT1G72770.3 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0255850 AT3G11410.1 36.134 238 120 9 37 246 106 339 1.30e-27 110
Msa0255850 AT1G07430.1 33.054 239 132 7 36 250 121 355 2.41e-27 110
Msa0255850 AT2G40860.4 31.559 263 163 7 34 283 293 551 2.52e-27 111
Msa0255850 AT2G40860.1 31.559 263 163 7 34 283 391 649 3.56e-27 111
Msa0255850 AT5G51760.2 32.143 308 145 11 36 283 79 382 1.44e-26 107
Msa0255850 AT5G51760.1 32.792 308 143 12 36 283 109 412 2.28e-26 107
Msa0255850 AT5G27930.1 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa0255850 AT5G27930.2 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa0255850 AT5G59220.1 33.891 239 127 8 36 250 112 343 1.68e-25 104
Msa0255850 AT1G17550.1 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa0255850 AT1G17550.2 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa0255850 AT1G18030.1 31.227 269 147 9 45 280 83 346 7.19e-25 102
Msa0255850 AT1G09160.2 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa0255850 AT1G09160.1 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa0255850 AT3G05640.2 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0255850 AT3G05640.1 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0255850 AT3G05640.3 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0255850 AT3G27140.1 32.653 245 99 8 49 283 1 189 1.01e-23 97.1
Msa0255850 AT4G27800.1 29.568 301 150 11 34 282 58 348 4.66e-23 97.8
Msa0255850 AT1G47380.1 29.545 264 153 10 38 282 44 293 6.78e-23 97.8
Msa0255850 AT2G40860.2 30.000 250 158 7 34 270 391 636 7.44e-23 98.6
Msa0255850 AT3G51370.1 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa0255850 AT3G51370.3 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa0255850 AT5G66080.1 31.408 277 121 11 70 282 85 356 2.52e-22 95.9
Msa0255850 AT4G38520.2 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa0255850 AT4G38520.1 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa0255850 AT3G12620.2 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa0255850 AT3G12620.1 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa0255850 AT4G31860.1 35.593 177 88 6 127 283 160 330 4.17e-22 94.7
Msa0255850 AT2G25070.1 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa0255850 AT2G25070.2 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa0255850 AT1G68410.4 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0255850 AT1G68410.3 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0255850 AT1G68410.1 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0255850 AT1G68410.2 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0255850 AT3G55050.1 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa0255850 AT3G55050.2 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa0255850 AT4G31860.3 40.299 134 63 4 127 249 160 287 4.36e-21 90.9
Msa0255850 AT1G79630.6 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0255850 AT1G79630.3 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0255850 AT1G79630.4 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0255850 AT1G79630.5 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0255850 AT1G79630.2 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa0255850 AT1G79630.7 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa0255850 AT1G18030.2 33.032 221 115 7 47 239 85 300 9.78e-21 90.1
Msa0255850 AT5G02760.1 30.142 282 122 12 67 282 72 344 9.81e-21 91.3
Msa0255850 AT1G79630.8 37.222 180 89 7 127 283 218 396 1.03e-20 92.0
Msa0255850 AT1G79630.1 37.222 180 89 7 127 283 222 400 1.07e-20 92.0
Msa0255850 AT5G01700.1 31.923 260 101 9 46 282 82 288 1.78e-20 89.7
Msa0255850 AT2G20050.1 29.008 262 142 10 61 282 140 397 2.96e-20 91.3
Msa0255850 AT2G20050.2 29.008 262 142 10 61 282 140 397 3.13e-20 90.9
Msa0255850 AT5G01700.2 31.801 261 102 9 46 283 131 338 5.09e-20 89.4
Msa0255850 AT5G06750.3 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa0255850 AT5G06750.1 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa0255850 AT3G02750.2 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa0255850 AT3G02750.1 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa0255850 AT4G32950.1 32.296 257 127 12 64 282 69 316 3.82e-19 86.3
Msa0255850 AT1G16220.1 34.054 185 88 7 127 283 199 377 4.78e-19 87.0
Msa0255850 AT3G17090.1 27.875 287 141 9 59 282 75 358 9.61e-19 85.5
Msa0255850 AT4G27800.2 30.451 266 127 11 34 251 58 313 2.18e-18 84.0
Msa0255850 AT5G66080.2 32.645 242 99 9 102 282 14 252 2.35e-18 83.2
Msa0255850 AT4G27800.3 30.451 266 127 11 34 251 58 313 2.45e-18 84.0
Msa0255850 AT5G36250.1 33.488 215 118 8 92 282 171 384 2.62e-18 84.7
Msa0255850 AT3G51370.2 30.165 242 105 9 102 282 30 268 5.83e-18 82.4
Msa0255850 AT2G05050.1 40.171 117 62 3 173 283 76 190 5.93e-18 80.5
Msa0255850 AT4G03415.1 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0255850 AT4G03415.3 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0255850 AT4G03415.2 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0255850 AT4G31860.2 40.164 122 56 4 127 237 160 275 1.56e-17 80.9
Msa0255850 AT4G33920.1 29.181 281 125 11 70 282 64 338 1.68e-16 79.0
Msa0255850 AT5G26010.1 31.496 254 136 10 67 283 73 325 2.60e-16 78.2
Msa0255850 AT5G36250.2 31.441 229 118 9 92 282 171 398 4.43e-15 75.5
Msa0255850 AT5G06750.2 34.066 182 73 8 127 268 68 242 8.68e-15 73.6
Msa0255850 AT1G03590.1 39.568 139 67 6 127 249 185 322 1.07e-14 74.3
Msa0255850 AT3G16560.1 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0255850 AT3G16560.4 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0255850 AT3G16560.2 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0255850 AT5G36250.3 34.706 170 93 7 92 244 171 339 5.29e-13 68.6
Msa0255850 AT4G33920.2 29.388 245 106 9 102 282 14 255 7.59e-13 67.8
Msa0255850 AT4G33920.3 31.863 204 80 7 136 282 24 225 1.36e-12 66.6
Msa0255850 AT3G16560.3 32.804 189 89 7 117 272 266 449 1.67e-12 67.8
Msa0255850 AT5G19280.1 25.869 259 159 10 49 280 323 575 2.16e-12 67.4
Msa0255850 AT1G72770.2 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa0255850 AT1G72770.5 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa0255850 AT4G32950.2 33.010 206 98 11 64 238 69 265 7.26e-12 64.7
Msa0255850 AT5G59220.2 31.250 192 101 8 36 203 112 296 1.47e-11 64.3
Msa0255850 AT5G19280.2 25.279 269 158 11 49 280 323 585 2.20e-11 64.3
Msa0255850 AT2G40860.3 27.273 209 136 6 34 230 391 595 6.29e-11 63.2

Find 101 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCTTTCCCTGAATC+AGG 0.135034 2_2:-50199536 None:intergenic
TTTAACTTTGTGTGTATATT+AGG 0.173385 2_2:+50201016 Msa0255850:three_prime_UTR
TGGTGGACAATAATTATTTA+TGG 0.229879 2_2:-50197859 None:intergenic
CAAATTGATAACCATGAATT+AGG 0.239726 2_2:+50199650 Msa0255850:CDS
CTGTGTTGGGTACAACAATT+TGG 0.239846 2_2:-50201304 None:intergenic
GGTTTATCAGACCCTGATTC+AGG 0.253231 2_2:+50199524 Msa0255850:CDS
TTCCCATGTAGCCTGACTTC+TGG 0.289949 2_2:+50199926 Msa0255850:intron
TTTAGAGAAGTCAGGTGAAT+TGG 0.311226 2_2:+50200002 Msa0255850:CDS
ATATCCTCATGTTCTGTGTT+TGG 0.317522 2_2:-50200156 None:intergenic
CAAACATGCTTACACATAGA+AGG 0.330084 2_2:+50201251 Msa0255850:intron
ATGAGTGGTTTGGTTTGGTT+TGG 0.339489 2_2:-50197950 None:intergenic
AGCAAAATAATACCATCTTA+TGG 0.340052 2_2:-50200922 None:intergenic
AGATACTTTGATATTAAGTT+TGG 0.343843 2_2:+50201081 Msa0255850:three_prime_UTR
GCTTCCTTGACAGCATTTAC+AGG 0.350045 2_2:-50199955 None:intergenic
GGCTTGTTTGCAATATTTGA+TGG 0.354328 2_2:+50199671 Msa0255850:CDS
TTGGATCTATTGCACAAGAT+TGG 0.369173 2_2:-50201285 None:intergenic
TTGGCAGTGTCGAGGGCATT+TGG 0.369814 2_2:+50200427 Msa0255850:CDS
AGCCCGAGAATCCCCGATAT+TGG 0.376877 2_2:-50200085 None:intergenic
TTGCAAACAAGCCTAATTCA+TGG 0.382436 2_2:-50199661 None:intergenic
GCTTAATAAATTATTACATA+AGG 0.385471 2_2:-50200892 None:intergenic
AAGTTAGTAGTAGCCAATAT+CGG 0.387423 2_2:+50200072 Msa0255850:CDS
CACGGCTTTCACTTGGTAAA+GGG 0.388409 2_2:+50199581 Msa0255850:CDS
ATGATCCACTGACAGTTGTT+TGG 0.398064 2_2:-50200130 None:intergenic
TCTTCACTTGGTTTGTATGA+AGG 0.404903 2_2:-50200949 None:intergenic
TAGCCAATATCGGGGATTCT+CGG 0.408867 2_2:+50200082 Msa0255850:CDS
TCACTGAAGAAGCAGTTAAC+AGG 0.409429 2_2:+50200769 Msa0255850:CDS
AAATGAGACTGCAAGTAGTT+AGG 0.414154 2_2:-50199713 None:intergenic
AGGGAATGAGTGGTTTGGTT+TGG 0.416812 2_2:-50197955 None:intergenic
TTAGAGAAGTCAGGTGAATT+GGG 0.420684 2_2:+50200003 Msa0255850:CDS
TGTGTGTATATTAGGAACTT+TGG 0.425073 2_2:+50201024 Msa0255850:three_prime_UTR
AGTTAGTAGTAGCCAATATC+GGG 0.425576 2_2:+50200073 Msa0255850:CDS
CCATGAGGGAATGAGTGGTT+TGG 0.427953 2_2:-50197960 None:intergenic
ACAGGTTCTGTCCAGAAGTC+AGG 0.428823 2_2:-50199937 None:intergenic
TGATTGTATCAAAGATATAA+AGG 0.438060 2_2:+50200722 Msa0255850:CDS
GTTTGGTTTGGTTTGGTTTG+AGG 0.442123 2_2:-50197943 None:intergenic
GGGAAGATCATATCATGAAA+TGG 0.442666 2_2:+50199601 Msa0255850:CDS
GTTTGATAATATCTTAAAAG+AGG 0.444827 2_2:+50199736 Msa0255850:CDS
AGTCAGGTGAATTGGGAAGA+GGG 0.450651 2_2:+50200010 Msa0255850:CDS
AAATAAAGCATTTCTTCACT+TGG 0.455396 2_2:-50200961 None:intergenic
GGGGACGTTCCACGAGTTGA+TGG 0.455936 2_2:+50200400 Msa0255850:intron
GATAACTCTGCATCTGTGTT+GGG 0.462280 2_2:-50201317 None:intergenic
CAAACATGTCTTAAAGTAGT+AGG 0.462538 2_2:+50197722 None:intergenic
CTTCTCTAAAATACTAGAAT+CGG 0.465360 2_2:-50199989 None:intergenic
CTAACACGAGAAGTTCTTCA+AGG 0.471922 2_2:+50201343 Msa0255850:three_prime_UTR
AGCCAATATCGGGGATTCTC+GGG 0.474017 2_2:+50200083 Msa0255850:CDS
TCTTTCCTTTCCCTGAATCA+GGG 0.475011 2_2:-50199535 None:intergenic
TTTGAGGAAGAAATTAAGAA+AGG 0.475750 2_2:-50197927 None:intergenic
TCACGGCTTTCACTTGGTAA+AGG 0.477649 2_2:+50199580 Msa0255850:CDS
AATATCAAAGTATCTGCAAA+TGG 0.478699 2_2:-50201073 None:intergenic
GTTACCGCGATATTGATTGA+TGG 0.478710 2_2:+50200045 Msa0255850:CDS
TAAGCTTAATATCCATAAGA+TGG 0.479429 2_2:+50200910 Msa0255850:three_prime_UTR
TTGACTTGAGAGTGATGAAT+AGG 0.482423 2_2:-50197896 None:intergenic
AAGTCAGGTGAATTGGGAAG+AGG 0.482949 2_2:+50200009 Msa0255850:CDS
GAAAAGCAGCGACGATATCT+CGG 0.486004 2_2:+50200791 Msa0255850:CDS
GCAATATTTGATGGCCATGC+TGG 0.487035 2_2:+50199680 Msa0255850:CDS
TCAGACCCTGATTCAGGGAA+AGG 0.503717 2_2:+50199530 Msa0255850:CDS
CAAAGATATAAAGGATGCTC+GGG 0.504451 2_2:+50200731 Msa0255850:CDS
TTTGTTATATTAGCCAGTGA+TGG 0.505428 2_2:+50200523 Msa0255850:CDS
AGATAACTCTGCATCTGTGT+TGG 0.505485 2_2:-50201318 None:intergenic
GTTTATCAGACCCTGATTCA+GGG 0.507975 2_2:+50199525 Msa0255850:CDS
CATAACTCACGGCTTTCACT+TGG 0.508216 2_2:+50199574 Msa0255850:CDS
GTCAGGTGAATTGGGAAGAG+GGG 0.512339 2_2:+50200011 Msa0255850:CDS
AGTTGTAAATAAATTAGATA+CGG 0.524760 2_2:-50201396 None:intergenic
CATAAGGTATATGTTACACT+TGG 0.527299 2_2:-50200876 None:intergenic
TATTAGCCAGTGATGGATTG+TGG 0.530644 2_2:+50200530 Msa0255850:CDS
CGGGCTGTCTTATCAAAGAA+AGG 0.532439 2_2:+50200102 Msa0255850:CDS
TCAAAGATATAAAGGATGCT+CGG 0.536981 2_2:+50200730 Msa0255850:CDS
TAGTAGGAAACGCGTGAAAG+TGG 0.557764 2_2:+50197738 Msa0255850:five_prime_UTR
GACCTTCCACAATCCATCAC+TGG 0.559151 2_2:-50200536 None:intergenic
TATATCTTTGATACAATCAA+CGG 0.560301 2_2:-50200718 None:intergenic
AATAGGAATGATGAAGATGA+TGG 0.564314 2_2:-50197879 None:intergenic
ATGGACGGTTGGCAGTGTCG+AGG 0.565843 2_2:+50200419 Msa0255850:CDS
TGGACGGTTGGCAGTGTCGA+GGG 0.566300 2_2:+50200420 Msa0255850:CDS
AGATATTCTTCATAAGATGA+AGG 0.569831 2_2:+50197990 Msa0255850:CDS
TAACACGAGAAGTTCTTCAA+GGG 0.578367 2_2:+50201344 Msa0255850:three_prime_UTR
AGAACCTGTAAATGCTGTCA+AGG 0.580802 2_2:+50199951 Msa0255850:CDS
AAACATGCTTACACATAGAA+GGG 0.588481 2_2:+50201252 Msa0255850:intron
CCAAACCACTCATTCCCTCA+TGG 0.593389 2_2:+50197960 Msa0255850:exon
TCCACGAGTTGATGGACGGT+TGG 0.595972 2_2:+50200408 Msa0255850:CDS
AGATATAAAGGATGCTCGGG+CGG 0.605795 2_2:+50200734 Msa0255850:CDS
AATATCTCTAGCAGCCATGA+GGG 0.606073 2_2:-50197974 None:intergenic
ATCTTCTCTACTGTCACATG+TGG 0.609752 2_2:-50200484 None:intergenic
AGCCAGTGATGGATTGTGGA+AGG 0.612846 2_2:+50200534 Msa0255850:CDS
TGTGGCCAAACAACTGTCAG+TGG 0.618489 2_2:+50200125 Msa0255850:CDS
TTGCATATCTATTCATGATG+TGG 0.622785 2_2:+50201555 Msa0255850:three_prime_UTR
AGCAGCCATGAGGGAATGAG+TGG 0.626745 2_2:-50197965 None:intergenic
AGGAATGATGAAGATGATGG+TGG 0.627825 2_2:-50197876 None:intergenic
AAGATCATATCATGAAATGG+AGG 0.634765 2_2:+50199604 Msa0255850:CDS
ACGTTCCACGAGTTGATGGA+CGG 0.635047 2_2:+50200404 Msa0255850:CDS
TGAACCAAACACAGAACATG+AGG 0.635890 2_2:+50200152 Msa0255850:CDS
GCCAACCGTCCATCAACTCG+TGG 0.637325 2_2:-50200409 None:intergenic
TGTTAACTGCTTCTTCAGTG+AGG 0.637515 2_2:-50200767 None:intergenic
GAATATCTCTAGCAGCCATG+AGG 0.640244 2_2:-50197975 None:intergenic
TCAGGTGAATTGGGAAGAGG+GGG 0.645350 2_2:+50200012 Msa0255850:CDS
ATGTCGAAACACATAACTCA+CGG 0.646422 2_2:+50199563 Msa0255850:CDS
AACACGAGAAGTTCTTCAAG+GGG 0.648327 2_2:+50201345 Msa0255850:three_prime_UTR
TAGGTACATTGTGACCAGCA+TGG 0.661746 2_2:-50199694 None:intergenic
GTCAATATGAGTGATCTATG+TGG 0.671920 2_2:+50201103 Msa0255850:three_prime_UTR
TGTCTTATCAAAGAAAGGTG+TGG 0.685096 2_2:+50200107 Msa0255850:CDS
CTGACCATCAATCAATATCG+CGG 0.699551 2_2:-50200049 None:intergenic
GTTAGTAGTAGCCAATATCG+GGG 0.703000 2_2:+50200074 Msa0255850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGTATAATGAAATAA+AGG - chr2_2:50198033-50198052 None:intergenic 10.0%
!! ATTAAAAATATATATCCATA+AGG - chr2_2:50200593-50200612 None:intergenic 10.0%
!!! GATATATATTTTTAATACTA+AGG + chr2_2:50200597-50200616 Msa0255850:intron 10.0%
!!! TTATTTTTTTTAAAAACATC+GGG - chr2_2:50201438-50201457 None:intergenic 10.0%
!! TGAATCAAATTAATGAAAAT+TGG - chr2_2:50198133-50198152 None:intergenic 15.0%
!!! AAGCAAAAAAATAAGTTTTT+AGG + chr2_2:50198471-50198490 Msa0255850:intron 15.0%
!!! AAGTAAAAACCATTTTTTTT+AGG - chr2_2:50198559-50198578 None:intergenic 15.0%
!!! TATAATGATATGATAATGAT+AGG + chr2_2:50199173-50199192 Msa0255850:intron 15.0%
!!! TATTCTATATATTTTTGTGA+CGG + chr2_2:50199458-50199477 Msa0255850:intron 15.0%
!! GCTTAATAAATTATTACATA+AGG - chr2_2:50200895-50200914 None:intergenic 15.0%
!! AGTTGTAAATAAATTAGATA+CGG - chr2_2:50201399-50201418 None:intergenic 15.0%
!!! ATTTAGCTTTTTATGAATTT+TGG + chr2_2:50201497-50201516 Msa0255850:three_prime_UTR 15.0%
!! CTATAAAAAAGAAAGAAACA+CGG + chr2_2:50197797-50197816 Msa0255850:five_prime_UTR 20.0%
!! AATGAAATAAAGGATCTATA+TGG - chr2_2:50198023-50198042 None:intergenic 20.0%
!! AAGTATGTATGATCTAATAT+TGG - chr2_2:50198075-50198094 None:intergenic 20.0%
!! AAAACACACAAAAAACTAAA+GGG - chr2_2:50198188-50198207 None:intergenic 20.0%
!! AAAAACACACAAAAAACTAA+AGG - chr2_2:50198189-50198208 None:intergenic 20.0%
!!! TTTTTTGTGTGTTTTTCATT+TGG + chr2_2:50198193-50198212 Msa0255850:intron 20.0%
!! TTCAATGAACCTAAAAAAAA+TGG + chr2_2:50198547-50198566 Msa0255850:intron 20.0%
!! TTACTTATAAATGTAACCAA+AGG + chr2_2:50198573-50198592 Msa0255850:intron 20.0%
!! TACTTATAAATGTAACCAAA+GGG + chr2_2:50198574-50198593 Msa0255850:intron 20.0%
!!! AACTTATTATTATCCTTTTG+TGG + chr2_2:50198721-50198740 Msa0255850:intron 20.0%
!! TGCTAAAGTTATTGTTAATT+TGG + chr2_2:50198967-50198986 Msa0255850:intron 20.0%
!! TATAAGAAATACCAATTTGA+TGG + chr2_2:50199262-50199281 Msa0255850:intron 20.0%
!!! GTTTGATAATATCTTAAAAG+AGG + chr2_2:50199736-50199755 Msa0255850:CDS 20.0%
!!! TTTTTAATACTAAGGAAGTA+AGG + chr2_2:50200605-50200624 Msa0255850:intron 20.0%
!! TATATCTTTGATACAATCAA+CGG - chr2_2:50200721-50200740 None:intergenic 20.0%
!! TGATTGTATCAAAGATATAA+AGG + chr2_2:50200722-50200741 Msa0255850:CDS 20.0%
!!! TTTAACTTTGTGTGTATATT+AGG + chr2_2:50201016-50201035 Msa0255850:three_prime_UTR 20.0%
!! GTAAAAAAATCAATGATCTT+TGG + chr2_2:50201046-50201065 Msa0255850:three_prime_UTR 20.0%
!! AGATACTTTGATATTAAGTT+TGG + chr2_2:50201081-50201100 Msa0255850:three_prime_UTR 20.0%
!! TGGTGGACAATAATTATTTA+TGG - chr2_2:50197862-50197881 None:intergenic 25.0%
! TTTGAGGAAGAAATTAAGAA+AGG - chr2_2:50197930-50197949 None:intergenic 25.0%
! AGATATTCTTCATAAGATGA+AGG + chr2_2:50197990-50198009 Msa0255850:CDS 25.0%
! AAACACACAAAAAACTAAAG+GGG - chr2_2:50198187-50198206 None:intergenic 25.0%
!!! TTTGACTTGTATTTGACTAA+AGG + chr2_2:50198230-50198249 Msa0255850:intron 25.0%
! CATTGAATAACGAATGTATT+TGG - chr2_2:50198534-50198553 None:intergenic 25.0%
! GATAATAATAAGTTCGTGTT+TGG - chr2_2:50198715-50198734 None:intergenic 25.0%
! CAATTTAGCAAAATTCTTGA+TGG - chr2_2:50198878-50198897 None:intergenic 25.0%
!! TTATTGTTAATTTGGTGAAG+AGG + chr2_2:50198975-50198994 Msa0255850:intron 25.0%
!! TATTGTTAATTTGGTGAAGA+GGG + chr2_2:50198976-50198995 Msa0255850:intron 25.0%
!!! AGAACATTTTAGTTTGTTTG+TGG + chr2_2:50199024-50199043 Msa0255850:intron 25.0%
! TCAATTAATTCTGATATCGT+TGG - chr2_2:50199057-50199076 None:intergenic 25.0%
! AGAAAAACATTCCATCAAAT+TGG - chr2_2:50199276-50199295 None:intergenic 25.0%
! AAACTTTAATTAGCTAATGG+AGG - chr2_2:50199381-50199400 None:intergenic 25.0%
! TGCAAACTTTAATTAGCTAA+TGG - chr2_2:50199384-50199403 None:intergenic 25.0%
! ATATATAGAATACTAAGCGA+GGG - chr2_2:50199450-50199469 None:intergenic 25.0%
! AATATATAGAATACTAAGCG+AGG - chr2_2:50199451-50199470 None:intergenic 25.0%
!! CAAATTGATAACCATGAATT+AGG + chr2_2:50199650-50199669 Msa0255850:CDS 25.0%
!!! CTTCTCTAAAATACTAGAAT+CGG - chr2_2:50199992-50200011 None:intergenic 25.0%
! CATGAGGATATAAAAAATAG+AGG + chr2_2:50200168-50200187 Msa0255850:CDS 25.0%
! ATTATAAAGTGTATCATACC+TGG - chr2_2:50200213-50200232 None:intergenic 25.0%
! AGGTATGATACACTTTATAA+TGG + chr2_2:50200212-50200231 Msa0255850:intron 25.0%
!!! ATCTTTTTTGTCATCTAATC+AGG + chr2_2:50200379-50200398 Msa0255850:intron 25.0%
!!! TCTTTTTTGTCATCTAATCA+GGG + chr2_2:50200380-50200399 Msa0255850:intron 25.0%
! TATGCATGCATATTTAACTA+GGG + chr2_2:50200645-50200664 Msa0255850:intron 25.0%
! GTTTATTCATATATGATTCC+AGG + chr2_2:50200677-50200696 Msa0255850:intron 25.0%
! TAAGCTTAATATCCATAAGA+TGG + chr2_2:50200910-50200929 Msa0255850:three_prime_UTR 25.0%
! AGCAAAATAATACCATCTTA+TGG - chr2_2:50200925-50200944 None:intergenic 25.0%
!! AAATAAAGCATTTCTTCACT+TGG - chr2_2:50200964-50200983 None:intergenic 25.0%
!! AATATCAAAGTATCTGCAAA+TGG - chr2_2:50201076-50201095 None:intergenic 25.0%
!!! CAATTTTCAAGATGTTGTTA+AGG - chr2_2:50201188-50201207 None:intergenic 25.0%
! CTTAACAACATCTTGAAAAT+TGG + chr2_2:50201186-50201205 Msa0255850:intron 25.0%
!! AGGTCAAAATTCCAATTTTT+AGG - chr2_2:50201474-50201493 None:intergenic 25.0%
! TTCATAAAAAGCTAAATTGC+AGG - chr2_2:50201494-50201513 None:intergenic 25.0%
! ATGACCTAAAAATAAGATGA+GGG - chr2_2:50201524-50201543 None:intergenic 25.0%
! AATGACCTAAAAATAAGATG+AGG - chr2_2:50201525-50201544 None:intergenic 25.0%
TAAAAAAGAAAGAAACACGG+TGG + chr2_2:50197800-50197819 Msa0255850:five_prime_UTR 30.0%
AATAGGAATGATGAAGATGA+TGG - chr2_2:50197882-50197901 None:intergenic 30.0%
ATATATTTCCCTACAGATCA+GGG - chr2_2:50198273-50198292 None:intergenic 30.0%
! ATTGTGTGTATCTTTGTTTC+TGG + chr2_2:50198300-50198319 Msa0255850:intron 30.0%
! TTGTGTGTATCTTTGTTTCT+GGG + chr2_2:50198301-50198320 Msa0255850:intron 30.0%
! TTTTTGCTTACAAATGTGAC+CGG - chr2_2:50198460-50198479 None:intergenic 30.0%
CATTGCATAACTAATGTATC+CGG + chr2_2:50198496-50198515 Msa0255850:intron 30.0%
AATGTATCCGGTCTATATAT+AGG + chr2_2:50198508-50198527 Msa0255850:intron 30.0%
TATTTGGCCTATATATAGAC+CGG - chr2_2:50198518-50198537 None:intergenic 30.0%
TTAGTACATGTTTGGTATCA+CGG + chr2_2:50198603-50198622 Msa0255850:intron 30.0%
TGATACAAGTTAACAAGAGA+CGG - chr2_2:50198751-50198770 None:intergenic 30.0%
AACTTGTATCATCACCAATT+TGG + chr2_2:50198760-50198779 Msa0255850:intron 30.0%
TTATACCTCCATATGTTGTT+TGG + chr2_2:50199196-50199215 Msa0255850:intron 30.0%
TTATGCATCCAAACAACATA+TGG - chr2_2:50199207-50199226 None:intergenic 30.0%
ATGCATAAGATTTCCTATTG+TGG + chr2_2:50199219-50199238 Msa0255850:intron 30.0%
AAGATCATATCATGAAATGG+AGG + chr2_2:50199604-50199623 Msa0255850:CDS 30.0%
GTTAAGAAGTAACCAGAAAA+GGG - chr2_2:50199768-50199787 None:intergenic 30.0%
AGTTAAGAAGTAACCAGAAA+AGG - chr2_2:50199769-50199788 None:intergenic 30.0%
!!! TTGTTCAAGTTGACTTTTTC+AGG - chr2_2:50199855-50199874 None:intergenic 30.0%
!! TCTAGTATTTTAGAGAAGTC+AGG + chr2_2:50199994-50200013 Msa0255850:CDS 30.0%
AAGTTAGTAGTAGCCAATAT+CGG + chr2_2:50200072-50200091 Msa0255850:CDS 30.0%
GAGGATATAAAAAATAGAGG+TGG + chr2_2:50200171-50200190 Msa0255850:CDS 30.0%
TGCTTAGTAAAAAGTTCGAT+CGG + chr2_2:50200323-50200342 Msa0255850:intron 30.0%
!!! CTTTTTTGTCATCTAATCAG+GGG + chr2_2:50200381-50200400 Msa0255850:intron 30.0%
! TTTGTTATATTAGCCAGTGA+TGG + chr2_2:50200523-50200542 Msa0255850:CDS 30.0%
AGCATAATGCAAATACCTTA+TGG + chr2_2:50200575-50200594 Msa0255850:intron 30.0%
GTTAAATATGCATGCATACA+TGG - chr2_2:50200643-50200662 None:intergenic 30.0%
GTATGCATGCATATTTAACT+AGG + chr2_2:50200644-50200663 Msa0255850:intron 30.0%
TCAAAGATATAAAGGATGCT+CGG + chr2_2:50200730-50200749 Msa0255850:CDS 30.0%
CATAAGGTATATGTTACACT+TGG - chr2_2:50200879-50200898 None:intergenic 30.0%
TGTGTGTATATTAGGAACTT+TGG + chr2_2:50201024-50201043 Msa0255850:three_prime_UTR 30.0%
AAAAAATTCCAGAACAAGCT+AGG + chr2_2:50201156-50201175 Msa0255850:intron 30.0%
ACAACATCTTGAAAATTGGA+AGG + chr2_2:50201190-50201209 Msa0255850:intron 30.0%
! AAGGAAGGTGATAATTTTGT+AGG + chr2_2:50201209-50201228 Msa0255850:intron 30.0%
AAACATGCTTACACATAGAA+GGG + chr2_2:50201252-50201271 Msa0255850:intron 30.0%
! TTTTGGTCTCTCCTAAAAAT+TGG + chr2_2:50201460-50201479 Msa0255850:three_prime_UTR 30.0%
TTGCATATCTATTCATGATG+TGG + chr2_2:50201555-50201574 Msa0255850:three_prime_UTR 30.0%
! TTGACTTGAGAGTGATGAAT+AGG - chr2_2:50197899-50197918 None:intergenic 35.0%
GATATATTTCCCTACAGATC+AGG - chr2_2:50198274-50198293 None:intergenic 35.0%
GTGTGAATTGTTCAAAGTGA+AGG + chr2_2:50198376-50198395 Msa0255850:intron 35.0%
!! AGCTGTCACTTTCTTTATCA+CGG + chr2_2:50198417-50198436 Msa0255850:intron 35.0%
! ATGTACTAAAGTACTCCCTT+TGG - chr2_2:50198592-50198611 None:intergenic 35.0%
! GGAGTACTTTAGTACATGTT+TGG + chr2_2:50198595-50198614 Msa0255850:intron 35.0%
TAAGTTCGTGTTTGGTATCA+TGG - chr2_2:50198707-50198726 None:intergenic 35.0%
TGTATCATCACCAATTTGGA+TGG + chr2_2:50198764-50198783 Msa0255850:intron 35.0%
AGTTTAACTATACACACCCT+AGG - chr2_2:50198850-50198869 None:intergenic 35.0%
!!! TTTTAGTTTGTTTGTGGCCA+CGG + chr2_2:50199030-50199049 Msa0255850:intron 35.0%
GTGATTGTCTATGAAGAAAG+AGG - chr2_2:50199089-50199108 None:intergenic 35.0%
CTTTCTTCATAGACAATCAC+TGG + chr2_2:50199089-50199108 Msa0255850:intron 35.0%
TTGTCGTTACTCTTTCACAA+TGG - chr2_2:50199144-50199163 None:intergenic 35.0%
GACTGGTAACTTCTAATACT+TGG - chr2_2:50199325-50199344 None:intergenic 35.0%
TCATGCAAAGATTGAGAAGA+TGG + chr2_2:50199343-50199362 Msa0255850:intron 35.0%
GTCATTTGACATTAGCATGT+TGG + chr2_2:50199480-50199499 Msa0255850:intron 35.0%
TTGCAGGAAAAAGTTGGATT+TGG + chr2_2:50199503-50199522 Msa0255850:intron 35.0%
ATGTCGAAACACATAACTCA+CGG + chr2_2:50199563-50199582 Msa0255850:CDS 35.0%
GGGAAGATCATATCATGAAA+TGG + chr2_2:50199601-50199620 Msa0255850:CDS 35.0%
TTGCAAACAAGCCTAATTCA+TGG - chr2_2:50199664-50199683 None:intergenic 35.0%
! GGCTTGTTTGCAATATTTGA+TGG + chr2_2:50199671-50199690 Msa0255850:CDS 35.0%
AAATGAGACTGCAAGTAGTT+AGG - chr2_2:50199716-50199735 None:intergenic 35.0%
TTTAGAGAAGTCAGGTGAAT+TGG + chr2_2:50200002-50200021 Msa0255850:CDS 35.0%
TTAGAGAAGTCAGGTGAATT+GGG + chr2_2:50200003-50200022 Msa0255850:CDS 35.0%
AGTTAGTAGTAGCCAATATC+GGG + chr2_2:50200073-50200092 Msa0255850:CDS 35.0%
TGTCTTATCAAAGAAAGGTG+TGG + chr2_2:50200107-50200126 Msa0255850:CDS 35.0%
ATATCCTCATGTTCTGTGTT+TGG - chr2_2:50200159-50200178 None:intergenic 35.0%
!! GGTTTTGTATCAAGATTTCC+AGG + chr2_2:50200192-50200211 Msa0255850:CDS 35.0%
TAGACTTTAATCCAGTACTG+AGG + chr2_2:50200352-50200371 Msa0255850:intron 35.0%
AAAAGATGTATCCTCAGTAC+TGG - chr2_2:50200366-50200385 None:intergenic 35.0%
! AAGGAAGTAAGGATTAGTGT+TGG + chr2_2:50200616-50200635 Msa0255850:intron 35.0%
! CTTCTTGATTTGACATTACC+TGG - chr2_2:50200698-50200717 None:intergenic 35.0%
CAAAGATATAAAGGATGCTC+GGG + chr2_2:50200731-50200750 Msa0255850:CDS 35.0%
!! TCTTCACTTGGTTTGTATGA+AGG - chr2_2:50200952-50200971 None:intergenic 35.0%
GTCAATATGAGTGATCTATG+TGG + chr2_2:50201103-50201122 Msa0255850:three_prime_UTR 35.0%
CATCTTGAAAATTGGAAGGA+AGG + chr2_2:50201194-50201213 Msa0255850:intron 35.0%
CAAACATGCTTACACATAGA+AGG + chr2_2:50201251-50201270 Msa0255850:intron 35.0%
TTGGATCTATTGCACAAGAT+TGG - chr2_2:50201288-50201307 None:intergenic 35.0%
TAACACGAGAAGTTCTTCAA+GGG + chr2_2:50201344-50201363 Msa0255850:three_prime_UTR 35.0%
!!! TGGTCCCTCATCTTATTTTT+AGG + chr2_2:50201517-50201536 Msa0255850:three_prime_UTR 35.0%
!! GTGGATATGTCTTTTCAAGC+TGG + chr2_2:50197819-50197838 Msa0255850:five_prime_UTR 40.0%
! AGGAATGATGAAGATGATGG+TGG - chr2_2:50197879-50197898 None:intergenic 40.0%
!! GTTTGGTTTGGTTTGGTTTG+AGG - chr2_2:50197946-50197965 None:intergenic 40.0%
!! ATGAGTGGTTTGGTTTGGTT+TGG - chr2_2:50197953-50197972 None:intergenic 40.0%
AATATCTCTAGCAGCCATGA+GGG - chr2_2:50197977-50197996 None:intergenic 40.0%
ACAGATCAGGGCTATTTGAA+AGG - chr2_2:50198261-50198280 None:intergenic 40.0%
TTCAAATAGCCCTGATCTGT+AGG + chr2_2:50198261-50198280 Msa0255850:intron 40.0%
TCAAATAGCCCTGATCTGTA+GGG + chr2_2:50198262-50198281 Msa0255850:intron 40.0%
!! TGTATCTTTGTTTCTGGGTC+AGG + chr2_2:50198306-50198325 Msa0255850:intron 40.0%
GTGATAAAGAAAGTGACAGC+TGG - chr2_2:50198418-50198437 None:intergenic 40.0%
ACTTTCTTTATCACGGCATG+CGG + chr2_2:50198424-50198443 Msa0255850:intron 40.0%
CGGTGAGTTTATCGAAATCA+TGG + chr2_2:50198623-50198642 Msa0255850:intron 40.0%
AAGAGACGGTAAACCACAAA+AGG - chr2_2:50198737-50198756 None:intergenic 40.0%
CAGAAGTCTACCATCCAAAT+TGG - chr2_2:50198777-50198796 None:intergenic 40.0%
ATTTGGATGGTAGACTTCTG+TGG + chr2_2:50198777-50198796 Msa0255850:intron 40.0%
AGCTCATTCTTTCATGACCT+AGG + chr2_2:50198830-50198849 Msa0255850:intron 40.0%
GCTCATTCTTTCATGACCTA+GGG + chr2_2:50198831-50198850 Msa0255850:intron 40.0%
CATCTTTCCTAGAAGAGAGT+AGG - chr2_2:50198920-50198939 None:intergenic 40.0%
! CTACTCTCTTCTAGGAAAGA+TGG + chr2_2:50198918-50198937 Msa0255850:intron 40.0%
!! CTTCTAGGAAAGATGGACTA+TGG + chr2_2:50198925-50198944 Msa0255850:intron 40.0%
TGCATCCAAACAACATATGG+AGG - chr2_2:50199204-50199223 None:intergenic 40.0%
AGATTTCCTATTGTGGATGC+TGG + chr2_2:50199226-50199245 Msa0255850:intron 40.0%
TTGTTTCCAGCATCCACAAT+AGG - chr2_2:50199235-50199254 None:intergenic 40.0%
CTTCTCAATCTTTGCATGAC+TGG - chr2_2:50199342-50199361 None:intergenic 40.0%
! TGTTGGTTGCAGGAAAAAGT+TGG + chr2_2:50199497-50199516 Msa0255850:intron 40.0%
GTTTATCAGACCCTGATTCA+GGG + chr2_2:50199525-50199544 Msa0255850:CDS 40.0%
TCTTTCCTTTCCCTGAATCA+GGG - chr2_2:50199538-50199557 None:intergenic 40.0%
! AAGAGGTAACTTCCCTTTTC+TGG + chr2_2:50199753-50199772 Msa0255850:intron 40.0%
CATGGGAAAAAATGGATGGT+TGG - chr2_2:50199914-50199933 None:intergenic 40.0%
GCTACATGGGAAAAAATGGA+TGG - chr2_2:50199918-50199937 None:intergenic 40.0%
TCAGGCTACATGGGAAAAAA+TGG - chr2_2:50199922-50199941 None:intergenic 40.0%
AGAACCTGTAAATGCTGTCA+AGG + chr2_2:50199951-50199970 Msa0255850:CDS 40.0%
! GTTACCGCGATATTGATTGA+TGG + chr2_2:50200045-50200064 Msa0255850:CDS 40.0%
CTGACCATCAATCAATATCG+CGG - chr2_2:50200052-50200071 None:intergenic 40.0%
GTTAGTAGTAGCCAATATCG+GGG + chr2_2:50200074-50200093 Msa0255850:CDS 40.0%
ATGATCCACTGACAGTTGTT+TGG - chr2_2:50200133-50200152 None:intergenic 40.0%
TGAACCAAACACAGAACATG+AGG + chr2_2:50200152-50200171 Msa0255850:CDS 40.0%
ATCTTCTCTACTGTCACATG+TGG - chr2_2:50200487-50200506 None:intergenic 40.0%
!! TATTAGCCAGTGATGGATTG+TGG + chr2_2:50200530-50200549 Msa0255850:CDS 40.0%
TGTTAACTGCTTCTTCAGTG+AGG - chr2_2:50200770-50200789 None:intergenic 40.0%
TCACTGAAGAAGCAGTTAAC+AGG + chr2_2:50200769-50200788 Msa0255850:CDS 40.0%
CTGTGTTGGGTACAACAATT+TGG - chr2_2:50201307-50201326 None:intergenic 40.0%
GATAACTCTGCATCTGTGTT+GGG - chr2_2:50201320-50201339 None:intergenic 40.0%
AGATAACTCTGCATCTGTGT+TGG - chr2_2:50201321-50201340 None:intergenic 40.0%
CTAACACGAGAAGTTCTTCA+AGG + chr2_2:50201343-50201362 Msa0255850:three_prime_UTR 40.0%
AACACGAGAAGTTCTTCAAG+GGG + chr2_2:50201345-50201364 Msa0255850:three_prime_UTR 40.0%
TAGTAGGAAACGCGTGAAAG+TGG + chr2_2:50197738-50197757 Msa0255850:five_prime_UTR 45.0%
!! AGGGAATGAGTGGTTTGGTT+TGG - chr2_2:50197958-50197977 None:intergenic 45.0%
GAATATCTCTAGCAGCCATG+AGG - chr2_2:50197978-50197997 None:intergenic 45.0%
! AGTGACAGCTGGTTAGTTCT+AGG - chr2_2:50198407-50198426 None:intergenic 45.0%
TGCTTACAAATGTGACCGGA+GGG - chr2_2:50198456-50198475 None:intergenic 45.0%
TTGCTTACAAATGTGACCGG+AGG - chr2_2:50198457-50198476 None:intergenic 45.0%
GTGCTTACCTACTCTCTTCT+AGG + chr2_2:50198910-50198929 Msa0255850:intron 45.0%
ATTCTGATATCGTTGGTCCG+TGG - chr2_2:50199050-50199069 None:intergenic 45.0%
! GACATTAGCATGTTGGTTGC+AGG + chr2_2:50199487-50199506 Msa0255850:intron 45.0%
GGTTTATCAGACCCTGATTC+AGG + chr2_2:50199524-50199543 Msa0255850:CDS 45.0%
CTCTTTCCTTTCCCTGAATC+AGG - chr2_2:50199539-50199558 None:intergenic 45.0%
CATAACTCACGGCTTTCACT+TGG + chr2_2:50199574-50199593 Msa0255850:CDS 45.0%
TCACGGCTTTCACTTGGTAA+AGG + chr2_2:50199580-50199599 Msa0255850:CDS 45.0%
CACGGCTTTCACTTGGTAAA+GGG + chr2_2:50199581-50199600 Msa0255850:CDS 45.0%
! GCAATATTTGATGGCCATGC+TGG + chr2_2:50199680-50199699 Msa0255850:CDS 45.0%
TAGGTACATTGTGACCAGCA+TGG - chr2_2:50199697-50199716 None:intergenic 45.0%
GCTTCCTTGACAGCATTTAC+AGG - chr2_2:50199958-50199977 None:intergenic 45.0%
AAGTCAGGTGAATTGGGAAG+AGG + chr2_2:50200009-50200028 Msa0255850:CDS 45.0%
AGTCAGGTGAATTGGGAAGA+GGG + chr2_2:50200010-50200029 Msa0255850:CDS 45.0%
TAGCCAATATCGGGGATTCT+CGG + chr2_2:50200082-50200101 Msa0255850:CDS 45.0%
CGGGCTGTCTTATCAAAGAA+AGG + chr2_2:50200102-50200121 Msa0255850:CDS 45.0%
AGATATAAAGGATGCTCGGG+CGG + chr2_2:50200734-50200753 Msa0255850:CDS 45.0%
GAAAAGCAGCGACGATATCT+CGG + chr2_2:50200791-50200810 Msa0255850:CDS 45.0%
!!! TTTATTTTTTTTAAAAACAT+CGG - chr2_2:50201439-50201458 None:intergenic 5.0%
!!! TTTTAAAAAAAATAAAGTTT+TGG + chr2_2:50201443-50201462 Msa0255850:three_prime_UTR 5.0%
CCATGAGGGAATGAGTGGTT+TGG - chr2_2:50197963-50197982 None:intergenic 50.0%
CCAAACCACTCATTCCCTCA+TGG + chr2_2:50197960-50197979 Msa0255850:exon 50.0%
GAAGAGGGTGAGAAAGTTGC+TGG + chr2_2:50198991-50199010 Msa0255850:intron 50.0%
TCAGACCCTGATTCAGGGAA+AGG + chr2_2:50199530-50199549 Msa0255850:CDS 50.0%
TTCCCATGTAGCCTGACTTC+TGG + chr2_2:50199926-50199945 Msa0255850:intron 50.0%
GTCCAGAAGTCAGGCTACAT+GGG - chr2_2:50199931-50199950 None:intergenic 50.0%
TGTCCAGAAGTCAGGCTACA+TGG - chr2_2:50199932-50199951 None:intergenic 50.0%
ACAGGTTCTGTCCAGAAGTC+AGG - chr2_2:50199940-50199959 None:intergenic 50.0%
GTCAGGTGAATTGGGAAGAG+GGG + chr2_2:50200011-50200030 Msa0255850:CDS 50.0%
TCAGGTGAATTGGGAAGAGG+GGG + chr2_2:50200012-50200031 Msa0255850:CDS 50.0%
AGCCAATATCGGGGATTCTC+GGG + chr2_2:50200083-50200102 Msa0255850:CDS 50.0%
TGTGGCCAAACAACTGTCAG+TGG + chr2_2:50200125-50200144 Msa0255850:CDS 50.0%
!! ACGTTCCACGAGTTGATGGA+CGG + chr2_2:50200404-50200423 Msa0255850:CDS 50.0%
!! AGCCAGTGATGGATTGTGGA+AGG + chr2_2:50200534-50200553 Msa0255850:CDS 50.0%
GACCTTCCACAATCCATCAC+TGG - chr2_2:50200539-50200558 None:intergenic 50.0%
!! GGACAACTCCTAGCTTGTTC+TGG - chr2_2:50201167-50201186 None:intergenic 50.0%
AGCAGCCATGAGGGAATGAG+TGG - chr2_2:50197968-50197987 None:intergenic 55.0%
AGCCCGAGAATCCCCGATAT+TGG - chr2_2:50200088-50200107 None:intergenic 55.0%
!! TCCACGAGTTGATGGACGGT+TGG + chr2_2:50200408-50200427 Msa0255850:CDS 55.0%
!! TTGGCAGTGTCGAGGGCATT+TGG + chr2_2:50200427-50200446 Msa0255850:CDS 55.0%
GGCATGCGGTTTACTCCCTC+CGG + chr2_2:50198438-50198457 Msa0255850:intron 60.0%
! GGGGACGTTCCACGAGTTGA+TGG + chr2_2:50200400-50200419 Msa0255850:intron 60.0%
GCCAACCGTCCATCAACTCG+TGG - chr2_2:50200412-50200431 None:intergenic 60.0%
ATGGACGGTTGGCAGTGTCG+AGG + chr2_2:50200419-50200438 Msa0255850:CDS 60.0%
! TGGACGGTTGGCAGTGTCGA+GGG + chr2_2:50200420-50200439 Msa0255850:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 50197733 50201612 50197733 ID=Msa0255850;Name=Msa0255850
chr2_2 mRNA 50197733 50201612 50197733 ID=Msa0255850-mRNA-1;Parent=Msa0255850;Name=Msa0255850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=246|1|1|1|0.8|0.66|6|661|283
chr2_2 exon 50197733 50198011 50197733 ID=Msa0255850-mRNA-1:exon:15154;Parent=Msa0255850-mRNA-1
chr2_2 exon 50199509 50199757 50199509 ID=Msa0255850-mRNA-1:exon:15155;Parent=Msa0255850-mRNA-1
chr2_2 exon 50199937 50200213 50199937 ID=Msa0255850-mRNA-1:exon:15156;Parent=Msa0255850-mRNA-1
chr2_2 exon 50200401 50200555 50200401 ID=Msa0255850-mRNA-1:exon:15157;Parent=Msa0255850-mRNA-1
chr2_2 exon 50200699 50201146 50200699 ID=Msa0255850-mRNA-1:exon:15158;Parent=Msa0255850-mRNA-1
chr2_2 exon 50201262 50201612 50201262 ID=Msa0255850-mRNA-1:exon:15159;Parent=Msa0255850-mRNA-1
chr2_2 five_prime_UTR 50197733 50197978 50197733 ID=Msa0255850-mRNA-1:five_prime_utr;Parent=Msa0255850-mRNA-1
chr2_2 CDS 50197979 50198011 50197979 ID=Msa0255850-mRNA-1:cds;Parent=Msa0255850-mRNA-1
chr2_2 CDS 50199509 50199757 50199509 ID=Msa0255850-mRNA-1:cds;Parent=Msa0255850-mRNA-1
chr2_2 CDS 50199937 50200213 50199937 ID=Msa0255850-mRNA-1:cds;Parent=Msa0255850-mRNA-1
chr2_2 CDS 50200401 50200555 50200401 ID=Msa0255850-mRNA-1:cds;Parent=Msa0255850-mRNA-1
chr2_2 CDS 50200699 50200836 50200699 ID=Msa0255850-mRNA-1:cds;Parent=Msa0255850-mRNA-1
chr2_2 three_prime_UTR 50200837 50201146 50200837 ID=Msa0255850-mRNA-1:three_prime_utr;Parent=Msa0255850-mRNA-1
chr2_2 three_prime_UTR 50201262 50201612 50201262 ID=Msa0255850-mRNA-1:three_prime_utr;Parent=Msa0255850-mRNA-1
Gene Sequence

>Msa0255850

ATGGCTGCTAGAGATATTCTTCATAAGATGAAGGAAAAAGTTGGATTTGGTTTATCAGACCCTGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAACACATAACTCACGGCTTTCACTTGGTAAAGGGAAGATCATATCATGAAATGGAGGATTATCTTGTTGCTAGATTTAAGCAAATTGATAACCATGAATTAGGCTTGTTTGCAATATTTGATGGCCATGCTGGTCACAATGTACCTAACTACTTGCAGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGACAGAACCTGTAAATGCTGTCAAGGAAGCGTATAGTATAACCGATTCTAGTATTTTAGAGAAGTCAGGTGAATTGGGAAGAGGGGGTTCAACAGCAGTTACCGCGATATTGATTGATGGTCAGAAGTTAGTAGTAGCCAATATCGGGGATTCTCGGGCTGTCTTATCAAAGAAAGGTGTGGCCAAACAACTGTCAGTGGATCATGAACCAAACACAGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAGATTTCCAGGGGACGTTCCACGAGTTGATGGACGGTTGGCAGTGTCGAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCACATGTGACAGTAGAGAAGATAAGTGAAGATGCAGAGTTTGTTATATTAGCCAGTGATGGATTGTGGAAGGTAATGTCAAATCAAGAAGCCGTTGATTGTATCAAAGATATAAAGGATGCTCGGGCGGCAGCAAAGCGCCTCACTGAAGAAGCAGTTAACAGGAAAAGCAGCGACGATATCTCGGTCATCGTTGTGAAACTTCAGTGA

Protein sequence

>Msa0255850

MAARDILHKMKEKVGFGLSDPDSGKGKSKMSKHITHGFHLVKGRSYHEMEDYLVARFKQIDNHELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWTEPVNAVKEAYSITDSSILEKSGELGRGGSTAVTAILIDGQKLVVANIGDSRAVLSKKGVAKQLSVDHEPNTEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVTVEKISEDAEFVILASDGLWKVMSNQEAVDCIKDIKDARAAAKRLTEEAVNRKSSDDISVIVVKLQ*