Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871660 | XP_013450949.1 | 96.000 | 375 | 14 | 1 | 1 | 374 | 1 | 375 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871660 | sp|Q5EA79|GALM_BOVIN | 42.515 | 334 | 179 | 7 | 32 | 364 | 19 | 340 | 1.25e-84 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871660 | A0A072U5G0 | 96.000 | 375 | 14 | 1 | 1 | 374 | 1 | 375 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011450 | Msa0871660 | -0.826720 | 2.324166e-54 | -8.615850e-47 |
| Msa0042490 | Msa0871660 | -0.801092 | 1.059886e-48 | -8.615850e-47 |
| Msa0619030 | Msa0871660 | -0.801653 | 8.135159e-49 | -8.615850e-47 |
| Msa0637590 | Msa0871660 | 0.800568 | 1.356209e-48 | -8.615850e-47 |
| Msa0826540 | Msa0871660 | -0.803069 | 4.156849e-49 | -8.615850e-47 |
| Msa0151510 | Msa0871660 | -0.801034 | 1.089353e-48 | -8.615850e-47 |
| Msa0225190 | Msa0871660 | -0.819337 | 1.224830e-52 | -8.615850e-47 |
| Msa0383900 | Msa0871660 | 0.800481 | 1.412317e-48 | -8.615850e-47 |
| Msa0388010 | Msa0871660 | 0.809867 | 1.530537e-50 | -8.615850e-47 |
| Msa0388070 | Msa0871660 | 0.823519 | 1.325693e-53 | -8.615850e-47 |
| Msa0262350 | Msa0871660 | -0.826591 | 2.494917e-54 | -8.615850e-47 |
| Msa0300130 | Msa0871660 | -0.810185 | 1.306909e-50 | -8.615850e-47 |
| Msa0527950 | Msa0871660 | 0.803051 | 4.192088e-49 | -8.615850e-47 |
| Msa0550990 | Msa0871660 | -0.804116 | 2.520753e-49 | -8.615850e-47 |
| Msa0864820 | Msa0871660 | -0.809736 | 1.632671e-50 | -8.615850e-47 |
| Msa0871660 | Msa0882480 | -0.817062 | 4.005978e-52 | -8.615850e-47 |
| Msa0871660 | Msa0925940 | 0.812218 | 4.736100e-51 | -8.615850e-47 |
| Msa0871660 | Msa0936970 | 0.898360 | 5.729264e-77 | -8.615850e-47 |
| Msa0871660 | Msa0966580 | 0.834400 | 3.064054e-56 | -8.615850e-47 |
| Msa0871660 | Msa0974340 | 0.845556 | 3.772568e-59 | -8.615850e-47 |
| Msa0871660 | Msa1086490 | -0.803051 | 4.192088e-49 | -8.615850e-47 |
| Msa0871660 | Msa1092310 | 0.821809 | 3.314922e-53 | -8.615850e-47 |
| Msa0871660 | Msa1136760 | 0.813197 | 2.891818e-51 | -8.615850e-47 |
| Msa0871660 | Msa1289050 | 0.800340 | 1.508981e-48 | -8.615850e-47 |
| Msa0871660 | Msa1390200 | 0.804116 | 2.520753e-49 | -8.615850e-47 |
| Msa0871660 | Msa1398140 | 0.800965 | 1.124943e-48 | -8.615850e-47 |
| Msa0871660 | Msa1455200 | 0.806316 | 8.727315e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871660 | MtrunA17_Chr6g0452991 | 96.000 | 375 | 14 | 1 | 1 | 374 | 1 | 375 | 0.0 | 732 |
| Msa0871660 | MtrunA17_Chr6g0452971 | 94.667 | 375 | 19 | 1 | 1 | 374 | 1 | 375 | 0.0 | 717 |
| Msa0871660 | MtrunA17_Chr7g0217021 | 72.207 | 367 | 94 | 4 | 1 | 366 | 1 | 360 | 0.0 | 541 |
| Msa0871660 | MtrunA17_Chr4g0060521 | 53.079 | 341 | 151 | 4 | 24 | 363 | 23 | 355 | 2.71e-123 | 360 |
| Msa0871660 | MtrunA17_Chr6g0478501 | 48.830 | 342 | 168 | 5 | 27 | 366 | 3 | 339 | 1.69e-109 | 324 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871660 | AT3G47800.1 | 53.591 | 362 | 146 | 7 | 4 | 364 | 16 | 356 | 2.38e-130 | 378 |
| Msa0871660 | AT5G15140.1 | 56.725 | 342 | 138 | 6 | 24 | 364 | 155 | 487 | 5.11e-128 | 377 |
| Msa0871660 | AT3G17940.1 | 47.761 | 335 | 170 | 4 | 33 | 365 | 10 | 341 | 6.07e-109 | 323 |
| Msa0871660 | AT3G01260.1 | 43.114 | 334 | 160 | 8 | 32 | 364 | 119 | 423 | 2.94e-78 | 247 |
Find 83 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTCTTAGCTGCTTC+TGG | 0.167891 | 6_1:+6598345 | Msa0871660:CDS |
| ATTTAGTTAACCATGCTTAT+TGG | 0.207837 | 6_1:+6601705 | Msa0871660:CDS |
| AGAGAACAAAGAAGGATTAA+AGG | 0.218075 | 6_1:+6601952 | Msa0871660:CDS |
| GCTGCTTATGGTTTCTATAT+TGG | 0.235822 | 6_1:-6598165 | None:intergenic |
| AACAACATAACATGCTTATA+AGG | 0.235997 | 6_1:-6602193 | None:intergenic |
| GGAGCTCAGTTTACTCTAAA+TGG | 0.254147 | 6_1:+6599821 | Msa0871660:CDS |
| ACAATAGTTGAAGGAAAATT+AGG | 0.263993 | 6_1:-6602157 | None:intergenic |
| TTACTGGTGTAGGTTTGTTT+AGG | 0.267070 | 6_1:-6601682 | None:intergenic |
| GAGGATTCAGTGATGTTCTT+TGG | 0.270041 | 6_1:+6600136 | Msa0871660:CDS |
| TACTGGTGTAGGTTTGTTTA+GGG | 0.287587 | 6_1:-6601681 | None:intergenic |
| AATTTCTTATATTAATTTGT+AGG | 0.294219 | 6_1:+6598292 | Msa0871660:intron |
| TGTGGTAACTGAATTTGATT+AGG | 0.298603 | 6_1:-6600194 | None:intergenic |
| GCATGGTTAACTAAATTTAC+TGG | 0.313208 | 6_1:-6601698 | None:intergenic |
| CTAAAATGTTGCCACTGTTA+TGG | 0.321628 | 6_1:-6601739 | None:intergenic |
| TTGCTTGCATAATTATGGTT+AGG | 0.322053 | 6_1:-6601655 | None:intergenic |
| TAATTTGTTTCAGGAAAGTT+AGG | 0.323657 | 6_1:+6598641 | Msa0871660:intron |
| ATTAACTATGTGCTTAATAA+AGG | 0.334398 | 6_1:+6601923 | Msa0871660:CDS |
| GTAACAGTGAGCTACATTCT+AGG | 0.335336 | 6_1:+6601623 | Msa0871660:CDS |
| TTACTTTGAAGGTCACTAAC+TGG | 0.341785 | 6_1:+6598442 | Msa0871660:CDS |
| AAGTTAGGTGATATTGTTCT+TGG | 0.341881 | 6_1:+6598656 | Msa0871660:CDS |
| ACCACGTTCAGCACTTTGTT+TGG | 0.345777 | 6_1:+6602102 | Msa0871660:CDS |
| GACAATAACCTTATTCCAAC+TGG | 0.357944 | 6_1:+6601803 | Msa0871660:CDS |
| TTCCTAAAACCACAAATTGT+TGG | 0.359831 | 6_1:+6601860 | Msa0871660:CDS |
| TTAGGATGATTAACAGAATC+AGG | 0.363742 | 6_1:-6602139 | None:intergenic |
| AAAGTCAATGTGGCTGCTTA+TGG | 0.365473 | 6_1:-6598177 | None:intergenic |
| GTTTCCATTACAGGATTTCC+TGG | 0.369437 | 6_1:+6601590 | Msa0871660:intron |
| GCTGCTTCTGGATTTGTCAA+TGG | 0.386195 | 6_1:+6598357 | Msa0871660:CDS |
| CATTAGCAATTAATTTGTAA+TGG | 0.396328 | 6_1:-6599847 | None:intergenic |
| GAAAGGTGATCTTACTTTGA+AGG | 0.398453 | 6_1:+6598431 | Msa0871660:CDS |
| CAGAATGATACATCATACTT+TGG | 0.403305 | 6_1:+6599764 | Msa0871660:intron |
| TGCTTGCATAATTATGGTTA+GGG | 0.408864 | 6_1:-6601654 | None:intergenic |
| GGAATAAGGTTATTGTCAAT+AGG | 0.410891 | 6_1:-6601797 | None:intergenic |
| GGTAGGGTTGCTAATAGAAT+TGG | 0.416927 | 6_1:+6599797 | Msa0871660:CDS |
| ATTCTTGTACCAACAATTTG+TGG | 0.418307 | 6_1:-6601869 | None:intergenic |
| TACAAATTAATTGCTAATGA+AGG | 0.427010 | 6_1:+6599851 | Msa0871660:CDS |
| GCACTATAAAATTGCAATCC+AGG | 0.428333 | 6_1:-6602034 | None:intergenic |
| AACCATGCTTATTGGAACTT+AGG | 0.428402 | 6_1:+6601713 | Msa0871660:CDS |
| GTGGTAACTGAATTTGATTA+GGG | 0.433912 | 6_1:-6600193 | None:intergenic |
| ATATATATATAGAAGGATAT+AGG | 0.447590 | 6_1:-6598222 | None:intergenic |
| TGTAGCTCACTGTTACTTTG+AGG | 0.450175 | 6_1:-6601616 | None:intergenic |
| ATAGTGATGGATAAGAAATC+AGG | 0.452035 | 6_1:+6601983 | Msa0871660:CDS |
| GTGAAGAATGATAAGGGAAA+AGG | 0.455139 | 6_1:+6602064 | Msa0871660:CDS |
| ATGGTTTCTATATTGGTCAC+CGG | 0.456245 | 6_1:-6598158 | None:intergenic |
| CAGTGATGTTCTTTGGAAAG+TGG | 0.458791 | 6_1:+6600143 | Msa0871660:CDS |
| AAGCTTAGTACTAATGCTCC+TGG | 0.469025 | 6_1:+6602016 | Msa0871660:CDS |
| CTTTGGAGCAACCGTTGGTA+GGG | 0.471024 | 6_1:+6599781 | Msa0871660:CDS |
| ATGTATTTACCATTCTTGTC+AGG | 0.475012 | 6_1:-6598492 | None:intergenic |
| ACATAGTATCACAAATATCT+TGG | 0.479696 | 6_1:-6598322 | None:intergenic |
| TACTTTGAAGGTCACTAACT+GGG | 0.480765 | 6_1:+6598443 | Msa0871660:CDS |
| TATTAAGAGTGGTGCTTAGT+GGG | 0.482540 | 6_1:-6598251 | None:intergenic |
| GGAAAATTAGAGAACAAAGA+AGG | 0.503162 | 6_1:+6601944 | Msa0871660:CDS |
| AAGTTGTTTGAGCTCAAGAA+AGG | 0.511642 | 6_1:+6598414 | Msa0871660:CDS |
| ATATTAAGAGTGGTGCTTAG+TGG | 0.513444 | 6_1:-6598252 | None:intergenic |
| TTAACTAAATTTACTGGTGT+AGG | 0.514196 | 6_1:-6601692 | None:intergenic |
| CAATGGCTCAATCAATAAGA+AGG | 0.526350 | 6_1:+6598374 | Msa0871660:CDS |
| AAGAATGATAAGGGAAAAGG+AGG | 0.537569 | 6_1:+6602067 | Msa0871660:CDS |
| ACTTTGGAGCAACCGTTGGT+AGG | 0.537610 | 6_1:+6599780 | Msa0871660:CDS |
| TTAGTCCTTCCTGACAAGAA+TGG | 0.538108 | 6_1:+6598483 | Msa0871660:CDS |
| AGACTTACAGTATATGCCTT+GGG | 0.538560 | 6_1:-6598689 | None:intergenic |
| TTCCTAAGTTCCAATAAGCA+TGG | 0.549621 | 6_1:-6601715 | None:intergenic |
| AAGACTTACAGTATATGCCT+TGG | 0.551996 | 6_1:-6598690 | None:intergenic |
| TGGTTTCTATATTGGTCACC+GGG | 0.552565 | 6_1:-6598157 | None:intergenic |
| AGGGTTGCTAATAGAATTGG+AGG | 0.552833 | 6_1:+6599800 | Msa0871660:CDS |
| GAAGGAAACAACACTCTCCA+TGG | 0.553714 | 6_1:+6599869 | Msa0871660:CDS |
| GTGGAAAAGTATGTAAGAGA+AGG | 0.556236 | 6_1:+6600162 | Msa0871660:CDS |
| ATTTACCATTCTTGTCAGGA+AGG | 0.581401 | 6_1:-6598488 | None:intergenic |
| ACTGTTACTTTGAGGTCACC+AGG | 0.582122 | 6_1:-6601608 | None:intergenic |
| TCATACTTTGGAGCAACCGT+TGG | 0.584784 | 6_1:+6599776 | Msa0871660:CDS |
| AAAGGTTGCAGCTATAGTGA+TGG | 0.595506 | 6_1:+6601970 | Msa0871660:CDS |
| AGTAAGAGATCCACATCCCC+CGG | 0.597127 | 6_1:+6598139 | Msa0871660:five_prime_UTR |
| AAAAGCATGTGGAACTTTGG+TGG | 0.603729 | 6_1:-6602224 | None:intergenic |
| TTATAATTAGGTGGAACTAG+AGG | 0.607356 | 6_1:+6600117 | Msa0871660:intron |
| TCTTGGATATGATACTCCCA+AGG | 0.640870 | 6_1:+6598673 | Msa0871660:CDS |
| TCTATTAGCAACCCTACCAA+CGG | 0.645731 | 6_1:-6599792 | None:intergenic |
| ACTTTGAAGGTCACTAACTG+GGG | 0.657814 | 6_1:+6598444 | Msa0871660:CDS |
| CTTCTTCACCATCAAAACTG+TGG | 0.659531 | 6_1:-6600212 | None:intergenic |
| GTTTCTATATTGGTCACCGG+GGG | 0.659885 | 6_1:-6598155 | None:intergenic |
| AACTTTGAGAAAAGTCAATG+TGG | 0.663208 | 6_1:-6598187 | None:intergenic |
| TCCAAACAAAGTGCTGAACG+TGG | 0.666017 | 6_1:-6602103 | None:intergenic |
| GGTTTCTATATTGGTCACCG+GGG | 0.690748 | 6_1:-6598156 | None:intergenic |
| AGAATGATAAGGGAAAAGGA+GGG | 0.703237 | 6_1:+6602068 | Msa0871660:CDS |
| AACTTAGGAAACCATAACAG+TGG | 0.715250 | 6_1:+6601728 | Msa0871660:CDS |
| TGGTAACTGAATTTGATTAG+GGG | 0.732880 | 6_1:-6600192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATATATATATATAGA+AGG | - | chr6_1:6598232-6598251 | None:intergenic | 10.0% |
| !!! | AATTTCTTATATTAATTTGT+AGG | + | chr6_1:6598292-6598311 | Msa0871660:intron | 10.0% |
| !! | TAAATTATTATAGTTATTGT+GGG | - | chr6_1:6599996-6600015 | None:intergenic | 10.0% |
| !!! | TCTCTTAATTTTTTATAATT+AGG | + | chr6_1:6600105-6600124 | Msa0871660:intron | 10.0% |
| !!! | TTTGTTTCAAATATATTTTA+TGG | - | chr6_1:6601135-6601154 | None:intergenic | 10.0% |
| !! | ATATATATATAGAAGGATAT+AGG | - | chr6_1:6598225-6598244 | None:intergenic | 15.0% |
| !!! | TCTAAAATAAAAGACAATTT+TGG | - | chr6_1:6598884-6598903 | None:intergenic | 15.0% |
| !!! | TATTTTTAGAAAATTATGGT+AGG | - | chr6_1:6599096-6599115 | None:intergenic | 15.0% |
| !!! | GTGTTATTTTTAGAAAATTA+TGG | - | chr6_1:6599100-6599119 | None:intergenic | 15.0% |
| !! | AAATTATTTAAGCATATGTT+TGG | - | chr6_1:6599180-6599199 | None:intergenic | 15.0% |
| !!! | TATACATCGAATATTTTTTT+TGG | + | chr6_1:6599375-6599394 | Msa0871660:intron | 15.0% |
| !!! | ATACATCGAATATTTTTTTT+GGG | + | chr6_1:6599376-6599395 | Msa0871660:intron | 15.0% |
| !! | CTAAATTATTATAGTTATTG+TGG | - | chr6_1:6599997-6600016 | None:intergenic | 15.0% |
| !!! | CAATTTTTAAATTGTTTTTG+TGG | - | chr6_1:6600031-6600050 | None:intergenic | 15.0% |
| !!! | AATTGATTCATAGATTAATT+TGG | + | chr6_1:6600046-6600065 | Msa0871660:intron | 15.0% |
| !!! | CTTAATTTTTTATAATTAGG+TGG | + | chr6_1:6600108-6600127 | Msa0871660:intron | 15.0% |
| !! | TAAGAAATTGCAAAATATTT+GGG | - | chr6_1:6600752-6600771 | None:intergenic | 15.0% |
| !! | ATAAGAAATTGCAAAATATT+TGG | - | chr6_1:6600753-6600772 | None:intergenic | 15.0% |
| !! | TAATTAATTATGTTGTTCTT+TGG | - | chr6_1:6601380-6601399 | None:intergenic | 15.0% |
| !! | ATCAATAAAGCAACAATTAA+TGG | - | chr6_1:6598559-6598578 | None:intergenic | 20.0% |
| !! | CAAAATGTAAACATATTCAA+AGG | - | chr6_1:6598730-6598749 | None:intergenic | 20.0% |
| !! | GAAAATACTAATCAAAGAAT+TGG | - | chr6_1:6598809-6598828 | None:intergenic | 20.0% |
| !!! | ATTAGTATTTTCTTCTTAGA+CGG | + | chr6_1:6598817-6598836 | Msa0871660:intron | 20.0% |
| !!! | CTTAATTATTTTTTCCTCAT+TGG | + | chr6_1:6599515-6599534 | Msa0871660:intron | 20.0% |
| !!! | ACTGTATTTTAACAATTGTT+TGG | + | chr6_1:6599631-6599650 | Msa0871660:intron | 20.0% |
| !!! | CATTAGCAATTAATTTGTAA+TGG | - | chr6_1:6599850-6599869 | None:intergenic | 20.0% |
| !! | TACAAATTAATTGCTAATGA+AGG | + | chr6_1:6599851-6599870 | Msa0871660:CDS | 20.0% |
| !! | CTTGTACATAGAATTATAAT+TGG | + | chr6_1:6599939-6599958 | Msa0871660:intron | 20.0% |
| !! | TCTATATATATGATGAAATG+TGG | - | chr6_1:6600076-6600095 | None:intergenic | 20.0% |
| !! | AATATTGCAGTACTATAATT+TGG | + | chr6_1:6600276-6600295 | Msa0871660:intron | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr6_1:6600792-6600811 | Msa0871660:intron | 20.0% |
| !! | AAGAAATTGTCCAATTTATA+GGG | - | chr6_1:6600805-6600824 | None:intergenic | 20.0% |
| !! | AAAGAAATTGTCCAATTTAT+AGG | - | chr6_1:6600806-6600825 | None:intergenic | 20.0% |
| !! | TTAGTTAAAACAATGTGTAT+TGG | - | chr6_1:6601339-6601358 | None:intergenic | 20.0% |
| !! | TTCTACTTTATCAATATCAA+AGG | - | chr6_1:6601534-6601553 | None:intergenic | 20.0% |
| !! | ATTAACTATGTGCTTAATAA+AGG | + | chr6_1:6601923-6601942 | Msa0871660:CDS | 20.0% |
| !!! | AAATTTTGTGAAGAATGATA+AGG | + | chr6_1:6602057-6602076 | Msa0871660:CDS | 20.0% |
| !!! | AATTTTGTGAAGAATGATAA+GGG | + | chr6_1:6602058-6602077 | Msa0871660:CDS | 20.0% |
| ! | ACATAGTATCACAAATATCT+TGG | - | chr6_1:6598325-6598344 | None:intergenic | 25.0% |
| !!! | TGCTTCTATTAATTTGTTTC+AGG | + | chr6_1:6598632-6598651 | Msa0871660:intron | 25.0% |
| !!! | TAATTTGTTTCAGGAAAGTT+AGG | + | chr6_1:6598641-6598660 | Msa0871660:intron | 25.0% |
| !!! | ATCGAATATTTTTTTTGGGA+TGG | + | chr6_1:6599380-6599399 | Msa0871660:intron | 25.0% |
| !! | CGAATATTTTATGTTTGCTT+TGG | + | chr6_1:6599413-6599432 | Msa0871660:intron | 25.0% |
| ! | CTTCAAACAAGTAAAACTAA+AGG | - | chr6_1:6599464-6599483 | None:intergenic | 25.0% |
| !! | GAGTTCCACAAATTTTTAAT+AGG | + | chr6_1:6599559-6599578 | Msa0871660:intron | 25.0% |
| ! | AGGTACCTATTAAAAATTTG+TGG | - | chr6_1:6599567-6599586 | None:intergenic | 25.0% |
| ! | TAATTAAAACATGTGTACCA+TGG | - | chr6_1:6599889-6599908 | None:intergenic | 25.0% |
| ! | TTATAGTACTGCAATATTGA+AGG | - | chr6_1:6600274-6600293 | None:intergenic | 25.0% |
| ! | AGAAATACACAGGTAATATT+AGG | - | chr6_1:6600571-6600590 | None:intergenic | 25.0% |
| ! | GGTTTATATAAGAAATTCAG+GGG | - | chr6_1:6600783-6600802 | None:intergenic | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+GGG | - | chr6_1:6600784-6600803 | None:intergenic | 25.0% |
| ! | AGAAATTGTCCAATTTATAG+GGG | - | chr6_1:6600804-6600823 | None:intergenic | 25.0% |
| ! | CCAAAATTATTATAAAGCCT+GGG | - | chr6_1:6600893-6600912 | None:intergenic | 25.0% |
| !! | ATTGAAGATCAGAGTTTTTA+GGG | - | chr6_1:6601017-6601036 | None:intergenic | 25.0% |
| !! | TATTGAAGATCAGAGTTTTT+AGG | - | chr6_1:6601018-6601037 | None:intergenic | 25.0% |
| !! | ATATTTGAAACAAATCTTCC+TGG | + | chr6_1:6601141-6601160 | Msa0871660:intron | 25.0% |
| ! | TATGTATATAGTATGCTTCA+AGG | - | chr6_1:6601172-6601191 | None:intergenic | 25.0% |
| ! | AGATATAGAAAAAGAGGTAA+AGG | - | chr6_1:6601506-6601525 | None:intergenic | 25.0% |
| ! | GAGAAAAGATATAGAAAAAG+AGG | - | chr6_1:6601512-6601531 | None:intergenic | 25.0% |
| ! | ATAGTATATGTTTCCATTAC+AGG | + | chr6_1:6601581-6601600 | Msa0871660:intron | 25.0% |
| ! | TTAACTAAATTTACTGGTGT+AGG | - | chr6_1:6601695-6601714 | None:intergenic | 25.0% |
| ! | ATTTAGTTAACCATGCTTAT+TGG | + | chr6_1:6601705-6601724 | Msa0871660:CDS | 25.0% |
| !! | GATGAAGTTGTTCAAATTTT+TGG | + | chr6_1:6601761-6601780 | Msa0871660:CDS | 25.0% |
| !! | AAAATTTTCCAGTTGGAATA+AGG | - | chr6_1:6601814-6601833 | None:intergenic | 25.0% |
| ! | AACCAATTACCAAAAACAAA+TGG | + | chr6_1:6601893-6601912 | Msa0871660:CDS | 25.0% |
| !!! | AACCATTTGTTTTTGGTAAT+TGG | - | chr6_1:6601898-6601917 | None:intergenic | 25.0% |
| !!! | ATGTCATAACCATTTGTTTT+TGG | - | chr6_1:6601905-6601924 | None:intergenic | 25.0% |
| ! | ACAATAGTTGAAGGAAAATT+AGG | - | chr6_1:6602160-6602179 | None:intergenic | 25.0% |
| !! | TCTTTTGTAACAATAGTTGA+AGG | - | chr6_1:6602169-6602188 | None:intergenic | 25.0% |
| ! | AACAACATAACATGCTTATA+AGG | - | chr6_1:6602196-6602215 | None:intergenic | 25.0% |
| ! | AACTTTGAGAAAAGTCAATG+TGG | - | chr6_1:6598190-6598209 | None:intergenic | 30.0% |
| TCATGCAAAGATATTAAGAG+TGG | - | chr6_1:6598265-6598284 | None:intergenic | 30.0% | |
| ATGTATTTACCATTCTTGTC+AGG | - | chr6_1:6598495-6598514 | None:intergenic | 30.0% | |
| AAGCAACAATTAATGGAAGA+TGG | - | chr6_1:6598552-6598571 | None:intergenic | 30.0% | |
| ATCAAACTAGAATGTTCAAC+TGG | + | chr6_1:6598599-6598618 | Msa0871660:intron | 30.0% | |
| AAGTTAGGTGATATTGTTCT+TGG | + | chr6_1:6598656-6598675 | Msa0871660:CDS | 30.0% | |
| !!! | GTATGTGACACATTTTGATT+TGG | + | chr6_1:6598848-6598867 | Msa0871660:intron | 30.0% |
| TATCTTCGTTCTATTCAAAC+TGG | + | chr6_1:6598908-6598927 | Msa0871660:intron | 30.0% | |
| !!! | ATTATGTAAGCTGGTTTTGT+AGG | - | chr6_1:6598934-6598953 | None:intergenic | 30.0% |
| ACATCTCTTATTATGTAAGC+TGG | - | chr6_1:6598943-6598962 | None:intergenic | 30.0% | |
| TTGTAGATATGCTAGAATCA+CGG | + | chr6_1:6599067-6599086 | Msa0871660:intron | 30.0% | |
| GTATTTATGCAAAATCACGA+TGG | + | chr6_1:6599123-6599142 | Msa0871660:intron | 30.0% | |
| AATTTGTGATTCCTGCTATT+AGG | + | chr6_1:6599195-6599214 | Msa0871660:intron | 30.0% | |
| TCGATAAATAACCTAATAGC+AGG | - | chr6_1:6599209-6599228 | None:intergenic | 30.0% | |
| ATAAGAATAGCATACACAAG+TGG | - | chr6_1:6599358-6599377 | None:intergenic | 30.0% | |
| AAAAACTTACTCAGTTTACC+TGG | - | chr6_1:6599488-6599507 | None:intergenic | 30.0% | |
| TTTAATAGGTACCTTGAACA+AGG | + | chr6_1:6599573-6599592 | Msa0871660:intron | 30.0% | |
| TTTAACAATTGTTTGGCAAC+TGG | + | chr6_1:6599638-6599657 | Msa0871660:intron | 30.0% | |
| TTAACAATTGTTTGGCAACT+GGG | + | chr6_1:6599639-6599658 | Msa0871660:intron | 30.0% | |
| CAGAATGATACATCATACTT+TGG | + | chr6_1:6599764-6599783 | Msa0871660:intron | 30.0% | |
| TTATAATTAGGTGGAACTAG+AGG | + | chr6_1:6600117-6600136 | Msa0871660:intron | 30.0% | |
| TGGTAACTGAATTTGATTAG+GGG | - | chr6_1:6600195-6600214 | None:intergenic | 30.0% | |
| GTGGTAACTGAATTTGATTA+GGG | - | chr6_1:6600196-6600215 | None:intergenic | 30.0% | |
| TGTGGTAACTGAATTTGATT+AGG | - | chr6_1:6600197-6600216 | None:intergenic | 30.0% | |
| ! | AGATGTTAGACACAATGTTT+TGG | + | chr6_1:6600344-6600363 | Msa0871660:intron | 30.0% |
| ATAAAAGAGAACACAGAGAA+CGG | + | chr6_1:6600425-6600444 | Msa0871660:intron | 30.0% | |
| AAATCCACTCTCAATAGTAT+TGG | + | chr6_1:6600503-6600522 | Msa0871660:intron | 30.0% | |
| ACAGGTAATATTAGGTGAAA+AGG | - | chr6_1:6600563-6600582 | None:intergenic | 30.0% | |
| ! | TTACCTGTGTATTTCTATCT+AGG | + | chr6_1:6600575-6600594 | Msa0871660:intron | 30.0% |
| AAATTGCAAAATATTTGGGC+CGG | - | chr6_1:6600748-6600767 | None:intergenic | 30.0% | |
| GGGGTTTATATAAGAAATTC+AGG | - | chr6_1:6600785-6600804 | None:intergenic | 30.0% | |
| !!! | TGCAATTTTTTTTTTTGCCC+AGG | + | chr6_1:6600873-6600892 | Msa0871660:intron | 30.0% |
| !! | CCCAGGCTTTATAATAATTT+TGG | + | chr6_1:6600890-6600909 | Msa0871660:intron | 30.0% |
| GCCAAAATTATTATAAAGCC+TGG | - | chr6_1:6600894-6600913 | None:intergenic | 30.0% | |
| !! | TATGTTGTTCTTTGGAATGT+TGG | - | chr6_1:6601372-6601391 | None:intergenic | 30.0% |
| TCTTACTGCTAACATAGATT+AGG | + | chr6_1:6601475-6601494 | Msa0871660:intron | 30.0% | |
| TGCTTGCATAATTATGGTTA+GGG | - | chr6_1:6601657-6601676 | None:intergenic | 30.0% | |
| TTGCTTGCATAATTATGGTT+AGG | - | chr6_1:6601658-6601677 | None:intergenic | 30.0% | |
| GCATGGTTAACTAAATTTAC+TGG | - | chr6_1:6601701-6601720 | None:intergenic | 30.0% | |
| GGAATAAGGTTATTGTCAAT+AGG | - | chr6_1:6601800-6601819 | None:intergenic | 30.0% | |
| ! | TCCAACTGGAAAATTTTCAT+CGG | + | chr6_1:6601817-6601836 | Msa0871660:CDS | 30.0% |
| !!! | TGTGGTTTTAGGAAATCATA+TGG | - | chr6_1:6601854-6601873 | None:intergenic | 30.0% |
| TTCCTAAAACCACAAATTGT+TGG | + | chr6_1:6601860-6601879 | Msa0871660:CDS | 30.0% | |
| ! | TACCAACAATTTGTGGTTTT+AGG | - | chr6_1:6601865-6601884 | None:intergenic | 30.0% |
| ATTCTTGTACCAACAATTTG+TGG | - | chr6_1:6601872-6601891 | None:intergenic | 30.0% | |
| GGAAAATTAGAGAACAAAGA+AGG | + | chr6_1:6601944-6601963 | Msa0871660:CDS | 30.0% | |
| AGAGAACAAAGAAGGATTAA+AGG | + | chr6_1:6601952-6601971 | Msa0871660:CDS | 30.0% | |
| !! | ATAGTGATGGATAAGAAATC+AGG | + | chr6_1:6601983-6602002 | Msa0871660:CDS | 30.0% |
| TTAGGATGATTAACAGAATC+AGG | - | chr6_1:6602142-6602161 | None:intergenic | 30.0% | |
| ATGGTTTCTATATTGGTCAC+CGG | - | chr6_1:6598161-6598180 | None:intergenic | 35.0% | |
| GCTGCTTATGGTTTCTATAT+TGG | - | chr6_1:6598168-6598187 | None:intergenic | 35.0% | |
| TATTAAGAGTGGTGCTTAGT+GGG | - | chr6_1:6598254-6598273 | None:intergenic | 35.0% | |
| ATATTAAGAGTGGTGCTTAG+TGG | - | chr6_1:6598255-6598274 | None:intergenic | 35.0% | |
| CAATGGCTCAATCAATAAGA+AGG | + | chr6_1:6598374-6598393 | Msa0871660:CDS | 35.0% | |
| AAGTTGTTTGAGCTCAAGAA+AGG | + | chr6_1:6598414-6598433 | Msa0871660:CDS | 35.0% | |
| GAAAGGTGATCTTACTTTGA+AGG | + | chr6_1:6598431-6598450 | Msa0871660:CDS | 35.0% | |
| ! | TTACTTTGAAGGTCACTAAC+TGG | + | chr6_1:6598442-6598461 | Msa0871660:CDS | 35.0% |
| ! | TACTTTGAAGGTCACTAACT+GGG | + | chr6_1:6598443-6598462 | Msa0871660:CDS | 35.0% |
| ATTTACCATTCTTGTCAGGA+AGG | - | chr6_1:6598491-6598510 | None:intergenic | 35.0% | |
| AGACTTACAGTATATGCCTT+GGG | - | chr6_1:6598692-6598711 | None:intergenic | 35.0% | |
| AAGACTTACAGTATATGCCT+TGG | - | chr6_1:6598693-6598712 | None:intergenic | 35.0% | |
| AATGTTGAATATCCCTGCAT+CGG | - | chr6_1:6598984-6599003 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTACCTTCTCCTT+TGG | + | chr6_1:6599297-6599316 | Msa0871660:intron | 35.0% |
| ! | GTTTTACTTGTTTGAAGACC+AGG | + | chr6_1:6599467-6599486 | Msa0871660:intron | 35.0% |
| ! | ATGTTATGATGCCTTGTTCA+AGG | - | chr6_1:6599587-6599606 | None:intergenic | 35.0% |
| AGTTATTGTGGGTTCTTTCA+TGG | - | chr6_1:6599985-6600004 | None:intergenic | 35.0% | |
| ! | GTGGAAAAGTATGTAAGAGA+AGG | + | chr6_1:6600162-6600181 | Msa0871660:CDS | 35.0% |
| !! | TTCAGTTACCACAGTTTTGA+TGG | + | chr6_1:6600204-6600223 | Msa0871660:CDS | 35.0% |
| TTGTGTCTAACATCTGTTCT+GGG | - | chr6_1:6600339-6600358 | None:intergenic | 35.0% | |
| ATTGTGTCTAACATCTGTTC+TGG | - | chr6_1:6600340-6600359 | None:intergenic | 35.0% | |
| TAAAAGAGAACACAGAGAAC+GGG | + | chr6_1:6600426-6600445 | Msa0871660:intron | 35.0% | |
| AGGTTGAGTCATATAAGACT+AGG | - | chr6_1:6600531-6600550 | None:intergenic | 35.0% | |
| AGTCCTAGATAGAAATACAC+AGG | - | chr6_1:6600581-6600600 | None:intergenic | 35.0% | |
| AGAGGGGTTTCTCATATTTA+GGG | - | chr6_1:6600606-6600625 | None:intergenic | 35.0% | |
| TGATTGAGAGAAAATGAGAG+GGG | - | chr6_1:6600622-6600641 | None:intergenic | 35.0% | |
| GTGATTGAGAGAAAATGAGA+GGG | - | chr6_1:6600623-6600642 | None:intergenic | 35.0% | |
| AGTGATTGAGAGAAAATGAG+AGG | - | chr6_1:6600624-6600643 | None:intergenic | 35.0% | |
| ATGAATTACAACTCAACCAG+CGG | + | chr6_1:6600682-6600701 | Msa0871660:intron | 35.0% | |
| TTTGTGTTAGTTGAGTTCAG+TGG | - | chr6_1:6600921-6600940 | None:intergenic | 35.0% | |
| ATTATCAAGAGGCTTAGAGT+TGG | - | chr6_1:6600944-6600963 | None:intergenic | 35.0% | |
| ! | CTAAGCCTCTTGATAATCAA+TGG | + | chr6_1:6600947-6600966 | Msa0871660:intron | 35.0% |
| !! | ACATGGGCTTTTTCTTCAAT+GGG | + | chr6_1:6601092-6601111 | Msa0871660:intron | 35.0% |
| ACAAGACTTGTAGAAACACA+CGG | + | chr6_1:6601248-6601267 | Msa0871660:intron | 35.0% | |
| !! | TTGTTCTTTGGAATGTTGGT+TGG | - | chr6_1:6601368-6601387 | None:intergenic | 35.0% |
| ! | GGCTTTTGCTTGCATAATTA+TGG | - | chr6_1:6601663-6601682 | None:intergenic | 35.0% |
| ! | TACTGGTGTAGGTTTGTTTA+GGG | - | chr6_1:6601684-6601703 | None:intergenic | 35.0% |
| ! | TTACTGGTGTAGGTTTGTTT+AGG | - | chr6_1:6601685-6601704 | None:intergenic | 35.0% |
| AACCATGCTTATTGGAACTT+AGG | + | chr6_1:6601713-6601732 | Msa0871660:CDS | 35.0% | |
| TTCCTAAGTTCCAATAAGCA+TGG | - | chr6_1:6601718-6601737 | None:intergenic | 35.0% | |
| AACTTAGGAAACCATAACAG+TGG | + | chr6_1:6601728-6601747 | Msa0871660:CDS | 35.0% | |
| CTAAAATGTTGCCACTGTTA+TGG | - | chr6_1:6601742-6601761 | None:intergenic | 35.0% | |
| GACAATAACCTTATTCCAAC+TGG | + | chr6_1:6601803-6601822 | Msa0871660:CDS | 35.0% | |
| ! | ACCGATGAAAATTTTCCAGT+TGG | - | chr6_1:6601821-6601840 | None:intergenic | 35.0% |
| GCACTATAAAATTGCAATCC+AGG | - | chr6_1:6602037-6602056 | None:intergenic | 35.0% | |
| GTGAAGAATGATAAGGGAAA+AGG | + | chr6_1:6602064-6602083 | Msa0871660:CDS | 35.0% | |
| AAGAATGATAAGGGAAAAGG+AGG | + | chr6_1:6602067-6602086 | Msa0871660:CDS | 35.0% | |
| AGAATGATAAGGGAAAAGGA+GGG | + | chr6_1:6602068-6602087 | Msa0871660:CDS | 35.0% | |
| ! | TGAAAAAGCATGTGGAACTT+TGG | - | chr6_1:6602230-6602249 | None:intergenic | 35.0% |
| TGGTTTCTATATTGGTCACC+GGG | - | chr6_1:6598160-6598179 | None:intergenic | 40.0% | |
| AAAGTCAATGTGGCTGCTTA+TGG | - | chr6_1:6598180-6598199 | None:intergenic | 40.0% | |
| ! | ACTTTGAAGGTCACTAACTG+GGG | + | chr6_1:6598444-6598463 | Msa0871660:CDS | 40.0% |
| TTAGTCCTTCCTGACAAGAA+TGG | + | chr6_1:6598483-6598502 | Msa0871660:CDS | 40.0% | |
| TCTTGGATATGATACTCCCA+AGG | + | chr6_1:6598673-6598692 | Msa0871660:CDS | 40.0% | |
| ATTCTCAAGGTTCACACCAA+AGG | - | chr6_1:6599316-6599335 | None:intergenic | 40.0% | |
| TGACTGGATGGATATTCTCA+AGG | - | chr6_1:6599329-6599348 | None:intergenic | 40.0% | |
| TGAGAATATCCATCCAGTCA+TGG | + | chr6_1:6599329-6599348 | Msa0871660:intron | 40.0% | |
| !! | CATCTCAAGTTGATCCAATG+AGG | - | chr6_1:6599532-6599551 | None:intergenic | 40.0% |
| TCTATTAGCAACCCTACCAA+CGG | - | chr6_1:6599795-6599814 | None:intergenic | 40.0% | |
| GGTAGGGTTGCTAATAGAAT+TGG | + | chr6_1:6599797-6599816 | Msa0871660:CDS | 40.0% | |
| AGGGTTGCTAATAGAATTGG+AGG | + | chr6_1:6599800-6599819 | Msa0871660:CDS | 40.0% | |
| GGAGCTCAGTTTACTCTAAA+TGG | + | chr6_1:6599821-6599840 | Msa0871660:CDS | 40.0% | |
| GAGGATTCAGTGATGTTCTT+TGG | + | chr6_1:6600136-6600155 | Msa0871660:CDS | 40.0% | |
| ! | CAGTGATGTTCTTTGGAAAG+TGG | + | chr6_1:6600143-6600162 | Msa0871660:CDS | 40.0% |
| CTTCTTCACCATCAAAACTG+TGG | - | chr6_1:6600215-6600234 | None:intergenic | 40.0% | |
| !!! | CACAGTTTTGATGGTGAAGA+AGG | + | chr6_1:6600213-6600232 | Msa0871660:CDS | 40.0% |
| ! | TAACATCTGTTCTGGGTGAA+GGG | - | chr6_1:6600332-6600351 | None:intergenic | 40.0% |
| GAGTGAAAGAACTTCAGAGT+AGG | - | chr6_1:6600475-6600494 | None:intergenic | 40.0% | |
| GGAACCAATACTATTGAGAG+TGG | - | chr6_1:6600510-6600529 | None:intergenic | 40.0% | |
| !! | AGGTGAAAAGGCATTGAACA+AGG | - | chr6_1:6600551-6600570 | None:intergenic | 40.0% |
| GAGAGGGGTTTCTCATATTT+AGG | - | chr6_1:6600607-6600626 | None:intergenic | 40.0% | |
| ! | AGCCTCTTGATAATCAATGG+TGG | + | chr6_1:6600950-6600969 | Msa0871660:intron | 40.0% |
| TGTGGATGAATGGCTGTATA+AGG | - | chr6_1:6601075-6601094 | None:intergenic | 40.0% | |
| TATACAGCCATTCATCCACA+TGG | + | chr6_1:6601075-6601094 | Msa0871660:intron | 40.0% | |
| ATACAGCCATTCATCCACAT+GGG | + | chr6_1:6601076-6601095 | Msa0871660:intron | 40.0% | |
| AAAAAGCCCATGTGGATGAA+TGG | - | chr6_1:6601085-6601104 | None:intergenic | 40.0% | |
| CATTGAAGAAAAAGCCCATG+TGG | - | chr6_1:6601093-6601112 | None:intergenic | 40.0% | |
| !! | CACATGGGCTTTTTCTTCAA+TGG | + | chr6_1:6601091-6601110 | Msa0871660:intron | 40.0% |
| ! | GTATGCTTCAAGGTATTTCC+AGG | - | chr6_1:6601162-6601181 | None:intergenic | 40.0% |
| GTTTCCATTACAGGATTTCC+TGG | + | chr6_1:6601590-6601609 | Msa0871660:intron | 40.0% | |
| !! | TGTAGCTCACTGTTACTTTG+AGG | - | chr6_1:6601619-6601638 | None:intergenic | 40.0% |
| GTAACAGTGAGCTACATTCT+AGG | + | chr6_1:6601623-6601642 | Msa0871660:CDS | 40.0% | |
| ! | GGAAAATTTTCATCGGTCGA+AGG | + | chr6_1:6601824-6601843 | Msa0871660:CDS | 40.0% |
| AAAGGTTGCAGCTATAGTGA+TGG | + | chr6_1:6601970-6601989 | Msa0871660:CDS | 40.0% | |
| AAGCTTAGTACTAATGCTCC+TGG | + | chr6_1:6602016-6602035 | Msa0871660:CDS | 40.0% | |
| ! | AAAAGCATGTGGAACTTTGG+TGG | - | chr6_1:6602227-6602246 | None:intergenic | 40.0% |
| GTTTCTATATTGGTCACCGG+GGG | - | chr6_1:6598158-6598177 | None:intergenic | 45.0% | |
| GGTTTCTATATTGGTCACCG+GGG | - | chr6_1:6598159-6598178 | None:intergenic | 45.0% | |
| CTTCTCTTCTTAGCTGCTTC+TGG | + | chr6_1:6598345-6598364 | Msa0871660:CDS | 45.0% | |
| GCTGCTTCTGGATTTGTCAA+TGG | + | chr6_1:6598357-6598376 | Msa0871660:CDS | 45.0% | |
| AAGGTTCACACCAAAGGAGA+AGG | - | chr6_1:6599310-6599329 | None:intergenic | 45.0% | |
| !! | TCATACTTTGGAGCAACCGT+TGG | + | chr6_1:6599776-6599795 | Msa0871660:CDS | 45.0% |
| GAAGGAAACAACACTCTCCA+TGG | + | chr6_1:6599869-6599888 | Msa0871660:CDS | 45.0% | |
| ! | AACATCTGTTCTGGGTGAAG+GGG | - | chr6_1:6600331-6600350 | None:intergenic | 45.0% |
| ! | CTAACATCTGTTCTGGGTGA+AGG | - | chr6_1:6600333-6600352 | None:intergenic | 45.0% |
| GTGTTAGTTGAGTTCAGTGG+TGG | - | chr6_1:6600918-6600937 | None:intergenic | 45.0% | |
| ! | CGCCACCATTGATTATCAAG+AGG | - | chr6_1:6600955-6600974 | None:intergenic | 45.0% |
| CGTGTGCTACAAGTTACTGT+GGG | - | chr6_1:6601225-6601244 | None:intergenic | 45.0% | |
| GTCACCAGGAAATCCTGTAA+TGG | - | chr6_1:6601597-6601616 | None:intergenic | 45.0% | |
| !! | ACTGTTACTTTGAGGTCACC+AGG | - | chr6_1:6601611-6601630 | None:intergenic | 45.0% |
| ACCACGTTCAGCACTTTGTT+TGG | + | chr6_1:6602102-6602121 | Msa0871660:CDS | 45.0% | |
| !! | TCCAAACAAAGTGCTGAACG+TGG | - | chr6_1:6602106-6602125 | None:intergenic | 45.0% |
| AGTAAGAGATCCACATCCCC+CGG | + | chr6_1:6598139-6598158 | Msa0871660:five_prime_UTR | 50.0% | |
| GCGTATGTACAACCGATGCA+GGG | + | chr6_1:6598969-6598988 | Msa0871660:intron | 50.0% | |
| AAGTGGTGACCATGACTGGA+TGG | - | chr6_1:6599341-6599360 | None:intergenic | 50.0% | |
| ACACAAGTGGTGACCATGAC+TGG | - | chr6_1:6599345-6599364 | None:intergenic | 50.0% | |
| !! | ACTTTGGAGCAACCGTTGGT+AGG | + | chr6_1:6599780-6599799 | Msa0871660:CDS | 50.0% |
| !! | CTTTGGAGCAACCGTTGGTA+GGG | + | chr6_1:6599781-6599800 | Msa0871660:CDS | 50.0% |
| AGAGAACGGGTAACCCAGTT+CGG | + | chr6_1:6600439-6600458 | Msa0871660:intron | 50.0% | |
| AAATATTTGGGCCGGAGCCT+GGG | - | chr6_1:6600740-6600759 | None:intergenic | 50.0% | |
| AAAATATTTGGGCCGGAGCC+TGG | - | chr6_1:6600741-6600760 | None:intergenic | 50.0% | |
| ! | AATCAATGGTGGCGCTAGTG+TGG | + | chr6_1:6600961-6600980 | Msa0871660:intron | 50.0% |
| GCGTGTGCTACAAGTTACTG+TGG | - | chr6_1:6601226-6601245 | None:intergenic | 50.0% | |
| ATATTGGTCACCGGGGGATG+TGG | - | chr6_1:6598152-6598171 | None:intergenic | 55.0% | |
| CGCGTATGTACAACCGATGC+AGG | + | chr6_1:6598968-6598987 | Msa0871660:intron | 55.0% | |
| GGATCGTCGCGATTCTGACA+TGG | + | chr6_1:6599144-6599163 | Msa0871660:intron | 55.0% | |
| AGGTGACGTTGCACCGAACT+GGG | - | chr6_1:6600455-6600474 | None:intergenic | 55.0% | |
| TAGGTGACGTTGCACCGAAC+TGG | - | chr6_1:6600456-6600475 | None:intergenic | 55.0% | |
| CTCAACCAGCGGCGATTCTA+AGG | + | chr6_1:6600693-6600712 | Msa0871660:intron | 55.0% | |
| !! | CCAGCGGCGATTCTAAGGCC+CGG | + | chr6_1:6600698-6600717 | Msa0871660:intron | 65.0% |
| !! | ATTCTAAGGCCCGGCGAGCC+CGG | + | chr6_1:6600707-6600726 | Msa0871660:intron | 65.0% |
| CCGGGCCTTAGAATCGCCGC+TGG | - | chr6_1:6600701-6600720 | None:intergenic | 70.0% | |
| CGGAGCCTGGGCAAGTGTCC+GGG | - | chr6_1:6600728-6600747 | None:intergenic | 70.0% | |
| CCGGAGCCTGGGCAAGTGTC+CGG | - | chr6_1:6600729-6600748 | None:intergenic | 70.0% | |
| CCGGACACTTGCCCAGGCTC+CGG | + | chr6_1:6600726-6600745 | Msa0871660:intron | 70.0% | |
| GGCAAGTGTCCGGGCTCGCC+GGG | - | chr6_1:6600719-6600738 | None:intergenic | 75.0% | |
| GGGCAAGTGTCCGGGCTCGC+CGG | - | chr6_1:6600720-6600739 | None:intergenic | 75.0% | |
| GCGAGCCCGGACACTTGCCC+AGG | + | chr6_1:6600720-6600739 | Msa0871660:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6598125 | 6602255 | 6598125 | ID=Msa0871660;Name=Msa0871660 |
| chr6_1 | mRNA | 6598125 | 6602255 | 6598125 | ID=Msa0871660-mRNA-1;Parent=Msa0871660;Name=Msa0871660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=159|1|0.83|1|0.8|0.66|6|0|374 |
| chr6_1 | exon | 6598125 | 6598267 | 6598125 | ID=Msa0871660-mRNA-1:exon:2086;Parent=Msa0871660-mRNA-1 |
| chr6_1 | exon | 6598302 | 6598504 | 6598302 | ID=Msa0871660-mRNA-1:exon:2087;Parent=Msa0871660-mRNA-1 |
| chr6_1 | exon | 6598654 | 6598703 | 6598654 | ID=Msa0871660-mRNA-1:exon:2088;Parent=Msa0871660-mRNA-1 |
| chr6_1 | exon | 6599767 | 6599890 | 6599767 | ID=Msa0871660-mRNA-1:exon:2089;Parent=Msa0871660-mRNA-1 |
| chr6_1 | exon | 6600127 | 6600234 | 6600127 | ID=Msa0871660-mRNA-1:exon:2090;Parent=Msa0871660-mRNA-1 |
| chr6_1 | exon | 6601603 | 6602255 | 6601603 | ID=Msa0871660-mRNA-1:exon:2091;Parent=Msa0871660-mRNA-1 |
| chr6_1 | five_prime_UTR | 6598125 | 6598267 | 6598125 | ID=Msa0871660-mRNA-1:five_prime_utr;Parent=Msa0871660-mRNA-1 |
| chr6_1 | five_prime_UTR | 6598302 | 6598317 | 6598302 | ID=Msa0871660-mRNA-1:five_prime_utr;Parent=Msa0871660-mRNA-1 |
| chr6_1 | CDS | 6598318 | 6598504 | 6598318 | ID=Msa0871660-mRNA-1:cds;Parent=Msa0871660-mRNA-1 |
| chr6_1 | CDS | 6598654 | 6598703 | 6598654 | ID=Msa0871660-mRNA-1:cds;Parent=Msa0871660-mRNA-1 |
| chr6_1 | CDS | 6599767 | 6599890 | 6599767 | ID=Msa0871660-mRNA-1:cds;Parent=Msa0871660-mRNA-1 |
| chr6_1 | CDS | 6600127 | 6600234 | 6600127 | ID=Msa0871660-mRNA-1:cds;Parent=Msa0871660-mRNA-1 |
| chr6_1 | CDS | 6601603 | 6602255 | 6601603 | ID=Msa0871660-mRNA-1:cds;Parent=Msa0871660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
