AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826540 MtrunA17_Chr5g0447531 99.623 265 1 0 1 265 1 265 0.0 540
Msa0826540 MtrunA17_Chr4g0051941 82.500 240 38 1 30 265 27 266 5.13e-149 417
Msa0826540 MtrunA17_Chr6g0453151 82.083 240 40 2 29 265 93 332 4.47e-148 417
Msa0826540 MtrunA17_Chr6g0453141 82.500 240 39 2 29 265 26 265 3.29e-147 412
Msa0826540 MtrunA17_Chr6g0453181 75.281 267 58 3 2 265 4 265 4.46e-145 407
Msa0826540 MtrunA17_Chr6g0453161 75.373 268 60 3 1 265 268 532 2.09e-143 412
Msa0826540 MtrunA17_Chr6g0453161 83.404 235 36 2 34 265 33 267 1.39e-142 410
Msa0826540 MtrunA17_Chr2g0318521 70.076 264 66 6 5 265 11 264 2.55e-124 354
Msa0826540 MtrunA17_Chr6g0464511 67.234 235 41 2 31 265 14 212 2.28e-107 309
Msa0826540 MtrunA17_Chr6g0476641 54.067 209 87 4 49 253 71 274 2.79e-62 197
Msa0826540 MtrunA17_Chr1g0157481 45.817 251 118 7 17 253 76 322 5.21e-62 198
Msa0826540 MtrunA17_Chr6g0453171 82.653 98 17 0 168 265 1 98 1.17e-54 171
Msa0826540 MtrunA17_Chr5g0448421 42.857 217 89 10 62 253 63 269 4.04e-37 132
Msa0826540 MtrunA17_Chr5g0448411 41.935 217 91 9 62 253 61 267 1.81e-36 130
Msa0826540 MtrunA17_Chr3g0133901 41.146 192 99 4 66 249 68 253 5.19e-36 129
Msa0826540 MtrunA17_Chr8g0345631 37.069 232 107 9 34 249 48 256 6.64e-36 129
Msa0826540 MtrunA17_Chr6g0462031 39.655 232 102 9 27 253 35 233 1.66e-35 127
Msa0826540 MtrunA17_Chr2g0301081 36.444 225 109 9 52 260 60 266 1.01e-31 117
Msa0826540 MtrunA17_Chr3g0092091 34.826 201 97 6 66 252 63 243 8.30e-28 107
Msa0826540 MtrunA17_Chr4g0006181 42.593 162 72 7 93 250 192 336 3.09e-25 102
Msa0826540 MtrunA17_Chr3g0113311 44.371 151 63 8 93 239 137 270 6.97e-21 89.4
Msa0826540 MtrunA17_Chr2g0279001 32.850 207 89 7 66 242 73 259 1.22e-17 80.1
Msa0826540 MtrunA17_Chr2g0296081 48.438 64 29 1 189 252 36 95 1.89e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0826540 AT2G05100.1 86.792 265 35 0 1 265 1 265 2.85e-176 486
Msa0826540 AT2G05070.1 86.038 265 37 0 1 265 1 265 2.42e-175 484
Msa0826540 AT3G27690.2 85.714 266 37 1 1 265 33 298 1.27e-173 481
Msa0826540 AT3G27690.1 85.714 266 37 1 1 265 1 266 2.35e-173 479
Msa0826540 AT2G05100.2 86.920 237 31 0 1 237 1 237 7.44e-153 429
Msa0826540 AT2G34420.1 75.746 268 55 3 2 265 4 265 5.21e-144 404
Msa0826540 AT1G29920.1 76.119 268 56 3 2 265 4 267 6.17e-144 404
Msa0826540 AT1G29910.1 76.119 268 56 3 2 265 4 267 6.17e-144 404
Msa0826540 AT1G29930.1 75.836 269 55 4 2 265 4 267 1.01e-143 404
Msa0826540 AT2G34430.1 76.119 268 55 5 2 265 4 266 7.57e-143 402
Msa0826540 AT5G54270.1 67.293 266 75 6 2 264 8 264 3.05e-121 347
Msa0826540 AT1G76570.1 44.776 268 129 7 2 256 62 323 2.77e-62 199
Msa0826540 AT4G10340.1 52.632 209 90 5 49 253 62 265 1.82e-57 185
Msa0826540 AT1G45474.2 41.969 193 97 4 66 249 56 242 5.46e-38 134
Msa0826540 AT1G45474.1 41.969 193 97 4 66 249 56 242 5.46e-38 134
Msa0826540 AT1G61520.3 40.486 247 107 12 32 253 34 265 6.94e-38 134
Msa0826540 AT1G61520.1 40.486 247 107 12 32 253 34 265 6.94e-38 134
Msa0826540 AT3G54890.1 43.367 196 91 6 63 253 52 232 1.03e-36 130
Msa0826540 AT3G61470.1 39.024 205 109 6 52 249 50 245 4.00e-36 129
Msa0826540 AT1G61520.2 42.308 208 85 10 72 254 14 211 1.86e-33 121
Msa0826540 AT1G19150.1 34.222 225 114 7 52 260 63 269 1.57e-29 112
Msa0826540 AT3G47470.1 38.342 193 101 6 66 252 64 244 2.32e-28 108
Msa0826540 AT3G08940.2 34.201 269 107 12 33 250 27 276 3.26e-26 104
Msa0826540 AT3G54890.4 41.875 160 74 5 63 218 52 196 3.89e-25 99.8
Msa0826540 AT5G01530.1 41.212 165 76 7 93 253 135 282 4.90e-25 101
Msa0826540 AT2G40100.1 43.137 153 67 7 93 242 136 271 7.24e-23 95.1
Msa0826540 AT3G54890.2 35.233 193 77 5 63 253 52 198 2.06e-22 92.4
Msa0826540 AT1G15820.1 30.916 262 123 9 15 242 19 256 5.45e-18 81.3
Msa0826540 AT5G28450.1 52.941 68 30 2 184 249 94 161 4.97e-14 68.9
Msa0826540 AT3G54890.3 43.182 88 42 2 63 149 52 132 2.21e-11 61.2

Find 136 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTCCTTGCAAAGGTTTC+AGG 0.102826 5_3:+66934069 None:intergenic
AGAGGGTGGCCTTGACTATT+TGG 0.205421 5_3:-66933914 Msa0826540:CDS
CATGAGTTCAGAATATTTAT+TGG 0.223691 5_3:-66933367 Msa0826540:three_prime_UTR
TAAAATCATCAACTACTTAA+AGG 0.232276 5_3:-66933238 Msa0826540:three_prime_UTR
CGGTGAGGCTGTGTGGTTTA+AGG 0.263630 5_3:-66933956 Msa0826540:CDS
TTTGTTCAAGCCATTGTTAC+TGG 0.264682 5_3:-66933649 Msa0826540:CDS
GCACAAGAGTTGACATTTCT+TGG 0.265825 5_3:+66933389 None:intergenic
CTCAGAGCATTCTTGCAATC+TGG 0.295339 5_3:-66933870 Msa0826540:CDS
ATGAGGGCGTTGAGGTTTCT+TGG 0.298444 5_3:+66934673 None:intergenic
CTCTGAGCATGGATCAGGTT+TGG 0.324151 5_3:+66933886 None:intergenic
GTCTTGGCGTTCTCATTGTC+CGG 0.330962 5_3:+66933543 None:intergenic
GAGGGTGGCCTTGACTATTT+GGG 0.336583 5_3:-66933913 Msa0826540:CDS
GGTCTTAAAACTTTGTTGTC+TGG 0.337060 5_3:+66933272 None:intergenic
TTGGCTATGTTCTCCATGTT+TGG 0.341425 5_3:-66933676 Msa0826540:CDS
TTCAACTCTGCGAATGCATC+AGG 0.344835 5_3:+66933724 None:intergenic
GTAGTTACATTGGTGAAAAT+AGG 0.354237 5_3:+66933462 None:intergenic
CCCTGACCGTCCCAAGTACT+TGG 0.361481 5_3:-66934178 Msa0826540:CDS
TTGTTTCAAACCAGTCTTGC+CGG 0.363409 5_3:+66934618 None:intergenic
ATGAGTTCAGAATATTTATT+GGG 0.365072 5_3:-66933366 Msa0826540:three_prime_UTR
GGTGAGTTTCCTGGTGACTA+TGG 0.365981 5_3:-66934120 Msa0826540:CDS
CCGTTCTTCTCAAGGATCTC+AGG 0.374661 5_3:+66933988 None:intergenic
TAACATAAAATAAGAGGTAT+AGG 0.381999 5_3:+66933306 None:intergenic
TACTTGACTGGTGAGTTTCC+TGG 0.393901 5_3:-66934129 Msa0826540:CDS
GCCCATGCGTTGTTGGCGAC+AGG 0.394359 5_3:+66933586 None:intergenic
GGCTACACAGGTTGTGCTCA+TGG 0.400913 5_3:-66933848 Msa0826540:CDS
CACAAGAGTTGACATTTCTT+GGG 0.402979 5_3:+66933390 None:intergenic
CCCAAGTACTTGGGACGGTC+AGG 0.404268 5_3:+66934177 None:intergenic
TCTGAGCATGGATCAGGTTT+GGG 0.410646 5_3:+66933887 None:intergenic
GAGAAGAACGGTGTTAAATT+CGG 0.410939 5_3:-66933976 Msa0826540:CDS
TCTTGGCGTTCTCATTGTCC+GGG 0.416065 5_3:+66933544 None:intergenic
TGGTCGTAAAGGTTCTGAAC+AGG 0.417502 5_3:+66933619 None:intergenic
TGCCGGTGAATGCTGATTGT+TGG 0.417954 5_3:+66934635 None:intergenic
TGGGCTATGCTTGGTGCATT+GGG 0.418579 5_3:-66934021 Msa0826540:CDS
GGTGGTGCCTTTGACCCTCT+TGG 0.419230 5_3:-66933760 Msa0826540:CDS
AGCATATGCCCATGCGTTGT+TGG 0.419884 5_3:+66933579 None:intergenic
GTGCTCATGGGATTTGTTGA+AGG 0.427865 5_3:-66933835 Msa0826540:CDS
ATGGGCTATGCTTGGTGCAT+TGG 0.428620 5_3:-66934022 Msa0826540:CDS
ACTAATTAACATAAAATAAG+AGG 0.435132 5_3:+66933300 None:intergenic
AACAAGGAAATGAGTTCATC+AGG 0.436049 5_3:-66934600 Msa0826540:CDS
AGAGTGCTCCTGAGAGCATT+TGG 0.436155 5_3:-66934528 Msa0826540:intron
ATCAGGAAAGCTGGTAACTT+TGG 0.441484 5_3:-66934583 Msa0826540:CDS
TGATGCATTCGCAGAGTTGA+AGG 0.448661 5_3:-66933722 Msa0826540:CDS
AGAGAATGGACCCAAGTACT+TGG 0.454278 5_3:+66934167 None:intergenic
GAATGCTCTGAGCATGGATC+AGG 0.464537 5_3:+66933881 None:intergenic
AAAATAAGAGGTATAGGTTA+CGG 0.467392 5_3:+66933312 None:intergenic
TTCTGCTTGTGTAGTTACAT+TGG 0.473050 5_3:+66933452 None:intergenic
TCAGAGCATTCTTGCAATCT+GGG 0.473136 5_3:-66933869 Msa0826540:CDS
ACCCTGTCGCCAACAACGCA+TGG 0.473833 5_3:-66933588 Msa0826540:CDS
TCAGCATTCACCGGCAAGAC+TGG 0.481069 5_3:-66934628 Msa0826540:CDS
TTGAAGTAATTCACAGCAGA+TGG 0.482906 5_3:-66934041 Msa0826540:CDS
AAGGCACCACCAGGGTATAG+TGG 0.492859 5_3:+66933772 None:intergenic
GTTGAAGGCTACAGAGTTGG+TGG 0.494755 5_3:-66933820 Msa0826540:CDS
CACAGCAGATGGGCTATGCT+TGG 0.495212 5_3:-66934030 Msa0826540:CDS
AACTCACCAGTCAAGTATGA+TGG 0.498383 5_3:+66934135 None:intergenic
AGTTTCCTGGTGACTATGGA+TGG 0.502040 5_3:-66934116 Msa0826540:CDS
CTCAAGAGGCCACCATGTCT+TGG 0.502591 5_3:+66933527 None:intergenic
GATGGAATTTGCTCAGAGAA+TGG 0.503528 5_3:+66934153 None:intergenic
CAAGCCATTGTTACTGGCAA+GGG 0.504441 5_3:-66933643 Msa0826540:CDS
AAGCTCACGGTTCCTTGCAA+AGG 0.505875 5_3:+66934062 None:intergenic
AATGAGTTCATCAGGAAAGC+TGG 0.507285 5_3:-66934592 Msa0826540:CDS
ATTTAACACCGTTCTTCTCA+AGG 0.517683 5_3:+66933980 None:intergenic
GAATGAGTTTGCACACAAAA+CGG 0.519083 5_3:-66933188 Msa0826540:three_prime_UTR
GCTACACAGGTTGTGCTCAT+GGG 0.523866 5_3:-66933847 Msa0826540:CDS
AGCAGAAGATTCAGCTCAAG+AGG 0.525912 5_3:+66933513 None:intergenic
GACTATGGATGGGACACAGC+TGG 0.528763 5_3:-66934105 Msa0826540:CDS
GGTCAGCAACATGGTCGTAA+AGG 0.529520 5_3:+66933608 None:intergenic
CCCATGCGTTGTTGGCGACA+GGG 0.536409 5_3:+66933587 None:intergenic
ACTACTTACCAAATGCTCTC+AGG 0.536679 5_3:+66934520 None:intergenic
CCCTGTCGCCAACAACGCAT+GGG 0.536908 5_3:-66933587 Msa0826540:CDS
AGCAAGACCAAGAGGGTCAA+AGG 0.536924 5_3:+66933753 None:intergenic
TGCACACAAAACGGTAAGAA+TGG 0.538835 5_3:-66933179 Msa0826540:three_prime_UTR
TCAAGCCATTGTTACTGGCA+AGG 0.539300 5_3:-66933644 Msa0826540:CDS
CAAATTCCATCATACTTGAC+TGG 0.540774 5_3:-66934141 Msa0826540:CDS
CGTTCTTCTCAAGGATCTCA+GGG 0.541586 5_3:+66933989 None:intergenic
AGAGGGTCAAAGGCACCACC+AGG 0.542069 5_3:+66933763 None:intergenic
GAATGGTGTTCAGATCAATC+AGG 0.543550 5_3:-66933162 Msa0826540:three_prime_UTR
GCCCAGATCTTCTCAGAGGG+TGG 0.543898 5_3:-66933928 Msa0826540:CDS
TTTGTTGAAGGCTACAGAGT+TGG 0.545933 5_3:-66933823 Msa0826540:CDS
TCTTGCAATCTGGGCTACAC+AGG 0.546344 5_3:-66933860 Msa0826540:CDS
CCTGACCGTCCCAAGTACTT+GGG 0.552290 5_3:-66934177 Msa0826540:CDS
AGAGTTGGTGGAGGACCACT+TGG 0.559575 5_3:-66933808 Msa0826540:CDS
GATTGCAGAGGTGGCCATGA+GGG 0.561616 5_3:+66934657 None:intergenic
GGAACTCAAGAACGGCCGAT+TGG 0.563130 5_3:-66933695 Msa0826540:CDS
GAGGCTGTGTGGTTTAAGGC+TGG 0.563162 5_3:-66933952 Msa0826540:CDS
GGTGCCCAGATCTTCTCAGA+GGG 0.564509 5_3:-66933931 Msa0826540:CDS
AGGTGGCCATGAGGGCGTTG+AGG 0.567837 5_3:+66934665 None:intergenic
ACATATAATCAGCCACAGAC+AGG 0.568395 5_3:+66933426 None:intergenic
TTGCAAGAATGCTCTGAGCA+TGG 0.570179 5_3:+66933875 None:intergenic
GCCACCCTCTGAGAAGATCT+GGG 0.573456 5_3:+66933927 None:intergenic
ATCCAACAATCAGCATTCAC+CGG 0.576154 5_3:-66934637 Msa0826540:CDS
ACATGGAGAACATAGCCAAT+CGG 0.576833 5_3:+66933680 None:intergenic
GGCAAGACTGGTTTGAAACA+AGG 0.588152 5_3:-66934616 Msa0826540:CDS
GTGGTAGGTAACAATGCACC+TGG 0.589809 5_3:-66933140 Msa0826540:three_prime_UTR
AGGCACCACCAGGGTATAGT+GGG 0.590141 5_3:+66933773 None:intergenic
CCTGAGATCCTTGAGAAGAA+CGG 0.593147 5_3:-66933988 Msa0826540:CDS
TGATTGTTGGATTGCAGAGG+TGG 0.593510 5_3:+66934648 None:intergenic
TGGCGACAGGGTCAGCAACA+TGG 0.597357 5_3:+66933599 None:intergenic
AGGGCCCTTGCCAGTAACAA+TGG 0.597695 5_3:+66933639 None:intergenic
CCAAGTACTTGGGACGGTCA+GGG 0.599166 5_3:+66934178 None:intergenic
GAGAATGGACCCAAGTACTT+GGG 0.599574 5_3:+66934168 None:intergenic
GTTCAGATCAATCAGGTGGT+AGG 0.604514 5_3:-66933155 Msa0826540:three_prime_UTR
TTGGGTTGCCCAAATAGTCA+AGG 0.608462 5_3:+66933905 None:intergenic
TGAAGTAATTCACAGCAGAT+GGG 0.611387 5_3:-66934040 Msa0826540:CDS
GTGTCCCATCCATAGTCACC+AGG 0.613151 5_3:+66934111 None:intergenic
CTGATTATATGTTAGAAATG+TGG 0.614343 5_3:-66933415 Msa0826540:three_prime_UTR
CTGATCCTGAAACCTTTGCA+AGG 0.615014 5_3:-66934074 Msa0826540:CDS
TGGTGCCCAGATCTTCTCAG+AGG 0.616548 5_3:-66933932 Msa0826540:CDS
TATGCTACTAACTTCGTCCC+CGG 0.620877 5_3:-66933562 Msa0826540:CDS
GGTGGAGGACCACTTGGTGA+AGG 0.624859 5_3:-66933802 Msa0826540:CDS
ACAATGAGAACGCCAAGACA+TGG 0.625601 5_3:-66933539 Msa0826540:exon
GGGTCTAGTCCTTCACCAAG+TGG 0.625944 5_3:+66933793 None:intergenic
TCAACTCTGCGAATGCATCA+GGG 0.627212 5_3:+66933725 None:intergenic
GGGTCATCAGCAAGACCAAG+AGG 0.629020 5_3:+66933745 None:intergenic
GGTCGTAAAGGTTCTGAACA+GGG 0.631913 5_3:+66933620 None:intergenic
ACTCTTCACAGTACGACGCA+TGG 0.636134 5_3:+66934546 None:intergenic
CTTCTCAAGGATCTCAGGGA+AGG 0.637864 5_3:+66933993 None:intergenic
TGCTGATTGTTGGATTGCAG+AGG 0.642666 5_3:+66934645 None:intergenic
ATTCGCAGAGTTGAAGGTCA+AGG 0.644022 5_3:-66933716 Msa0826540:CDS
AAGGTCAAGGAACTCAAGAA+CGG 0.645041 5_3:-66933703 Msa0826540:CDS
TGTGAATTACTTCAAGCTCA+CGG 0.646318 5_3:+66934049 None:intergenic
GAAGGCTACAGAGTTGGTGG+AGG 0.651701 5_3:-66933817 Msa0826540:CDS
CTTGGCGTTCTCATTGTCCG+GGG 0.655135 5_3:+66933545 None:intergenic
TTAAATTCGGTGAGGCTGTG+TGG 0.662485 5_3:-66933963 Msa0826540:CDS
ATGGACCCAAGTACTTGGGA+CGG 0.662771 5_3:+66934172 None:intergenic
AAGAAACCTCAACGCCCTCA+TGG 0.666321 5_3:-66934671 Msa0826540:exon
GGATTGCAGAGGTGGCCATG+AGG 0.667634 5_3:+66934656 None:intergenic
GGACTAGACCCACTATACCC+TGG 0.675418 5_3:-66933781 Msa0826540:CDS
GGTCATCAGCAAGACCAAGA+GGG 0.676366 5_3:+66933746 None:intergenic
TGGTGTTCAGATCAATCAGG+TGG 0.687250 5_3:-66933159 Msa0826540:three_prime_UTR
CAAGCAGAAGAACCTGTCTG+TGG 0.691612 5_3:-66933438 Msa0826540:three_prime_UTR
GTTTCCTGGTGACTATGGAT+GGG 0.694385 5_3:-66934115 Msa0826540:CDS
ATGAGAACGCCAAGACATGG+TGG 0.713145 5_3:-66933536 Msa0826540:exon
GAACGGTGTTAAATTCGGTG+AGG 0.717704 5_3:-66933971 Msa0826540:CDS
GAGGGTCAAAGGCACCACCA+GGG 0.717882 5_3:+66933764 None:intergenic
TTGAACAAAGAAACCAAACA+TGG 0.730913 5_3:+66933663 None:intergenic
CTAGACCCACTATACCCTGG+TGG 0.775578 5_3:-66933778 Msa0826540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTAACATAAAATAAG+AGG + chr5_3:66934527-66934546 None:intergenic 15.0%
!! ACTAATTAACATAAAATAAG+AGG + chr5_3:66934527-66934546 None:intergenic 15.0%
!! ATCAAATGTTAATAACTAAC+TGG - chr5_3:66933480-66933499 Msa0826540:three_prime_UTR 20.0%
!!! TTGTTTTCATATATTTGACT+TGG - chr5_3:66933595-66933614 Msa0826540:CDS 20.0%
!! ATGAGTTCAGAATATTTATT+GGG - chr5_3:66934458-66934477 Msa0826540:intron 20.0%
!!! TAACATAAAATAAGAGGTAT+AGG + chr5_3:66934521-66934540 None:intergenic 20.0%
!!! GTAGTTGATGATTTTATTTT+TGG + chr5_3:66934582-66934601 None:intergenic 20.0%
!! TAAAATCATCAACTACTTAA+AGG - chr5_3:66934586-66934605 Msa0826540:CDS 20.0%
!! ATCAAATGTTAATAACTAAC+TGG - chr5_3:66933480-66933499 Msa0826540:three_prime_UTR 20.0%
!!! TTGTTTTCATATATTTGACT+TGG - chr5_3:66933595-66933614 Msa0826540:CDS 20.0%
!! ATGAGTTCAGAATATTTATT+GGG - chr5_3:66934458-66934477 Msa0826540:intron 20.0%
!!! TAACATAAAATAAGAGGTAT+AGG + chr5_3:66934521-66934540 None:intergenic 20.0%
!!! GTAGTTGATGATTTTATTTT+TGG + chr5_3:66934582-66934601 None:intergenic 20.0%
!! TAAAATCATCAACTACTTAA+AGG - chr5_3:66934586-66934605 Msa0826540:CDS 20.0%
!! ATGTGCTAATATTTGAAGTA+AGG - chr5_3:66933562-66933581 Msa0826540:CDS 25.0%
! CTGATTATATGTTAGAAATG+TGG - chr5_3:66934409-66934428 Msa0826540:intron 25.0%
! CATGAGTTCAGAATATTTAT+TGG - chr5_3:66934457-66934476 Msa0826540:intron 25.0%
!! AAAATAAGAGGTATAGGTTA+CGG + chr5_3:66934515-66934534 None:intergenic 25.0%
!!! GATGATTTTATTTTTGGCTT+AGG + chr5_3:66934576-66934595 None:intergenic 25.0%
!! ATGTGCTAATATTTGAAGTA+AGG - chr5_3:66933562-66933581 Msa0826540:CDS 25.0%
! CTGATTATATGTTAGAAATG+TGG - chr5_3:66934409-66934428 Msa0826540:intron 25.0%
! CATGAGTTCAGAATATTTAT+TGG - chr5_3:66934457-66934476 Msa0826540:intron 25.0%
!! AAAATAAGAGGTATAGGTTA+CGG + chr5_3:66934515-66934534 None:intergenic 25.0%
!!! GATGATTTTATTTTTGGCTT+AGG + chr5_3:66934576-66934595 None:intergenic 25.0%
!!! TATGATCTGTTTTGAAAACC+AGG - chr5_3:66933618-66933637 Msa0826540:CDS 30.0%
TTGAACAAAGAAACCAAACA+TGG + chr5_3:66934164-66934183 None:intergenic 30.0%
GTAGTTACATTGGTGAAAAT+AGG + chr5_3:66934365-66934384 None:intergenic 30.0%
!!! ACTTCTCATTTTTTACATCC+AGG + chr5_3:66934705-66934724 None:intergenic 30.0%
!!! TATGATCTGTTTTGAAAACC+AGG - chr5_3:66933618-66933637 Msa0826540:CDS 30.0%
TTGAACAAAGAAACCAAACA+TGG + chr5_3:66934164-66934183 None:intergenic 30.0%
GTAGTTACATTGGTGAAAAT+AGG + chr5_3:66934365-66934384 None:intergenic 30.0%
!!! ACTTCTCATTTTTTACATCC+AGG + chr5_3:66934705-66934724 None:intergenic 30.0%
AACAAGGAAATGAGTTCATC+AGG - chr5_3:66933224-66933243 Msa0826540:three_prime_UTR 35.0%
CAAGAGTCATGATGAGATAA+AGG + chr5_3:66933383-66933402 None:intergenic 35.0%
!!! CCTGCGTAATTTTAGCTTTT+GGG + chr5_3:66933442-66933461 None:intergenic 35.0%
!!! ACCTGCGTAATTTTAGCTTT+TGG + chr5_3:66933443-66933462 None:intergenic 35.0%
!!! TCTGTTTTGAAAACCAGGTA+TGG - chr5_3:66933623-66933642 Msa0826540:CDS 35.0%
CAAATTCCATCATACTTGAC+TGG - chr5_3:66933683-66933702 Msa0826540:CDS 35.0%
TGTGAATTACTTCAAGCTCA+CGG + chr5_3:66933778-66933797 None:intergenic 35.0%
TTGAAGTAATTCACAGCAGA+TGG - chr5_3:66933783-66933802 Msa0826540:CDS 35.0%
TGAAGTAATTCACAGCAGAT+GGG - chr5_3:66933784-66933803 Msa0826540:CDS 35.0%
ATTTAACACCGTTCTTCTCA+AGG + chr5_3:66933847-66933866 None:intergenic 35.0%
! GAGAAGAACGGTGTTAAATT+CGG - chr5_3:66933848-66933867 Msa0826540:CDS 35.0%
TTTGTTCAAGCCATTGTTAC+TGG - chr5_3:66934175-66934194 Msa0826540:CDS 35.0%
TTCTGCTTGTGTAGTTACAT+TGG + chr5_3:66934375-66934394 None:intergenic 35.0%
CACAAGAGTTGACATTTCTT+GGG + chr5_3:66934437-66934456 None:intergenic 35.0%
! GGTCTTAAAACTTTGTTGTC+TGG + chr5_3:66934555-66934574 None:intergenic 35.0%
GAATGAGTTTGCACACAAAA+CGG - chr5_3:66934636-66934655 Msa0826540:CDS 35.0%
AACAAGGAAATGAGTTCATC+AGG - chr5_3:66933224-66933243 Msa0826540:three_prime_UTR 35.0%
CAAGAGTCATGATGAGATAA+AGG + chr5_3:66933383-66933402 None:intergenic 35.0%
!!! CCTGCGTAATTTTAGCTTTT+GGG + chr5_3:66933442-66933461 None:intergenic 35.0%
!!! ACCTGCGTAATTTTAGCTTT+TGG + chr5_3:66933443-66933462 None:intergenic 35.0%
!!! TCTGTTTTGAAAACCAGGTA+TGG - chr5_3:66933623-66933642 Msa0826540:CDS 35.0%
CAAATTCCATCATACTTGAC+TGG - chr5_3:66933683-66933702 Msa0826540:CDS 35.0%
TGTGAATTACTTCAAGCTCA+CGG + chr5_3:66933778-66933797 None:intergenic 35.0%
TTGAAGTAATTCACAGCAGA+TGG - chr5_3:66933783-66933802 Msa0826540:CDS 35.0%
TGAAGTAATTCACAGCAGAT+GGG - chr5_3:66933784-66933803 Msa0826540:CDS 35.0%
ATTTAACACCGTTCTTCTCA+AGG + chr5_3:66933847-66933866 None:intergenic 35.0%
! GAGAAGAACGGTGTTAAATT+CGG - chr5_3:66933848-66933867 Msa0826540:CDS 35.0%
TTTGTTCAAGCCATTGTTAC+TGG - chr5_3:66934175-66934194 Msa0826540:CDS 35.0%
TTCTGCTTGTGTAGTTACAT+TGG + chr5_3:66934375-66934394 None:intergenic 35.0%
CACAAGAGTTGACATTTCTT+GGG + chr5_3:66934437-66934456 None:intergenic 35.0%
! GGTCTTAAAACTTTGTTGTC+TGG + chr5_3:66934555-66934574 None:intergenic 35.0%
GAATGAGTTTGCACACAAAA+CGG - chr5_3:66934636-66934655 Msa0826540:CDS 35.0%
ATCCAACAATCAGCATTCAC+CGG - chr5_3:66933187-66933206 Msa0826540:three_prime_UTR 40.0%
TTGTTTCAAACCAGTCTTGC+CGG + chr5_3:66933209-66933228 None:intergenic 40.0%
AATGAGTTCATCAGGAAAGC+TGG - chr5_3:66933232-66933251 Msa0826540:three_prime_UTR 40.0%
ATCAGGAAAGCTGGTAACTT+TGG - chr5_3:66933241-66933260 Msa0826540:three_prime_UTR 40.0%
ACTACTTACCAAATGCTCTC+AGG + chr5_3:66933307-66933326 None:intergenic 40.0%
CCCAAAAGCTAAAATTACGC+AGG - chr5_3:66933439-66933458 Msa0826540:three_prime_UTR 40.0%
! GATGGAATTTGCTCAGAGAA+TGG + chr5_3:66933674-66933693 None:intergenic 40.0%
AACTCACCAGTCAAGTATGA+TGG + chr5_3:66933692-66933711 None:intergenic 40.0%
! TCAGAGCATTCTTGCAATCT+GGG - chr5_3:66933955-66933974 Msa0826540:CDS 40.0%
TTTGTTGAAGGCTACAGAGT+TGG - chr5_3:66934001-66934020 Msa0826540:CDS 40.0%
AAGGTCAAGGAACTCAAGAA+CGG - chr5_3:66934121-66934140 Msa0826540:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG + chr5_3:66934147-66934166 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG - chr5_3:66934148-66934167 Msa0826540:CDS 40.0%
ACATATAATCAGCCACAGAC+AGG + chr5_3:66934401-66934420 None:intergenic 40.0%
GCACAAGAGTTGACATTTCT+TGG + chr5_3:66934438-66934457 None:intergenic 40.0%
TGCACACAAAACGGTAAGAA+TGG - chr5_3:66934645-66934664 Msa0826540:CDS 40.0%
GAATGGTGTTCAGATCAATC+AGG - chr5_3:66934662-66934681 Msa0826540:exon 40.0%
ATCCAACAATCAGCATTCAC+CGG - chr5_3:66933187-66933206 Msa0826540:three_prime_UTR 40.0%
TTGTTTCAAACCAGTCTTGC+CGG + chr5_3:66933209-66933228 None:intergenic 40.0%
AATGAGTTCATCAGGAAAGC+TGG - chr5_3:66933232-66933251 Msa0826540:three_prime_UTR 40.0%
ATCAGGAAAGCTGGTAACTT+TGG - chr5_3:66933241-66933260 Msa0826540:three_prime_UTR 40.0%
ACTACTTACCAAATGCTCTC+AGG + chr5_3:66933307-66933326 None:intergenic 40.0%
CCCAAAAGCTAAAATTACGC+AGG - chr5_3:66933439-66933458 Msa0826540:three_prime_UTR 40.0%
! GATGGAATTTGCTCAGAGAA+TGG + chr5_3:66933674-66933693 None:intergenic 40.0%
AACTCACCAGTCAAGTATGA+TGG + chr5_3:66933692-66933711 None:intergenic 40.0%
! TCAGAGCATTCTTGCAATCT+GGG - chr5_3:66933955-66933974 Msa0826540:CDS 40.0%
TTTGTTGAAGGCTACAGAGT+TGG - chr5_3:66934001-66934020 Msa0826540:CDS 40.0%
AAGGTCAAGGAACTCAAGAA+CGG - chr5_3:66934121-66934140 Msa0826540:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG + chr5_3:66934147-66934166 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG - chr5_3:66934148-66934167 Msa0826540:CDS 40.0%
ACATATAATCAGCCACAGAC+AGG + chr5_3:66934401-66934420 None:intergenic 40.0%
GCACAAGAGTTGACATTTCT+TGG + chr5_3:66934438-66934457 None:intergenic 40.0%
TGCACACAAAACGGTAAGAA+TGG - chr5_3:66934645-66934664 Msa0826540:CDS 40.0%
GAATGGTGTTCAGATCAATC+AGG - chr5_3:66934662-66934681 Msa0826540:exon 40.0%
TGATTGTTGGATTGCAGAGG+TGG + chr5_3:66933179-66933198 None:intergenic 45.0%
! TGCTGATTGTTGGATTGCAG+AGG + chr5_3:66933182-66933201 None:intergenic 45.0%
!! GGCAAGACTGGTTTGAAACA+AGG - chr5_3:66933208-66933227 Msa0826540:three_prime_UTR 45.0%
GAGAATGGACCCAAGTACTT+GGG + chr5_3:66933659-66933678 None:intergenic 45.0%
AGAGAATGGACCCAAGTACT+TGG + chr5_3:66933660-66933679 None:intergenic 45.0%
TACTTGACTGGTGAGTTTCC+TGG - chr5_3:66933695-66933714 Msa0826540:CDS 45.0%
AGTTTCCTGGTGACTATGGA+TGG - chr5_3:66933708-66933727 Msa0826540:CDS 45.0%
GTTTCCTGGTGACTATGGAT+GGG - chr5_3:66933709-66933728 Msa0826540:CDS 45.0%
CTGATCCTGAAACCTTTGCA+AGG - chr5_3:66933750-66933769 Msa0826540:CDS 45.0%
CGTTCTTCTCAAGGATCTCA+GGG + chr5_3:66933838-66933857 None:intergenic 45.0%
CCTGAGATCCTTGAGAAGAA+CGG - chr5_3:66933836-66933855 Msa0826540:CDS 45.0%
! GAACGGTGTTAAATTCGGTG+AGG - chr5_3:66933853-66933872 Msa0826540:CDS 45.0%
! TTAAATTCGGTGAGGCTGTG+TGG - chr5_3:66933861-66933880 Msa0826540:CDS 45.0%
! TTGGGTTGCCCAAATAGTCA+AGG + chr5_3:66933922-66933941 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG + chr5_3:66933940-66933959 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG + chr5_3:66933952-66933971 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG - chr5_3:66933954-66933973 Msa0826540:CDS 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG - chr5_3:66933989-66934008 Msa0826540:CDS 45.0%
TCAACTCTGCGAATGCATCA+GGG + chr5_3:66934102-66934121 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG + chr5_3:66934103-66934122 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG - chr5_3:66934102-66934121 Msa0826540:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG - chr5_3:66934108-66934127 Msa0826540:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG - chr5_3:66934180-66934199 Msa0826540:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG - chr5_3:66934181-66934200 Msa0826540:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG + chr5_3:66934207-66934226 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG + chr5_3:66934208-66934227 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG - chr5_3:66934262-66934281 Msa0826540:intron 45.0%
ACAATGAGAACGCCAAGACA+TGG - chr5_3:66934285-66934304 Msa0826540:intron 45.0%
AGCAGAAGATTCAGCTCAAG+AGG + chr5_3:66934314-66934333 None:intergenic 45.0%
TGGTGTTCAGATCAATCAGG+TGG - chr5_3:66934665-66934684 Msa0826540:exon 45.0%
GTTCAGATCAATCAGGTGGT+AGG - chr5_3:66934669-66934688 Msa0826540:exon 45.0%
TGATTGTTGGATTGCAGAGG+TGG + chr5_3:66933179-66933198 None:intergenic 45.0%
! TGCTGATTGTTGGATTGCAG+AGG + chr5_3:66933182-66933201 None:intergenic 45.0%
!! GGCAAGACTGGTTTGAAACA+AGG - chr5_3:66933208-66933227 Msa0826540:three_prime_UTR 45.0%
GAGAATGGACCCAAGTACTT+GGG + chr5_3:66933659-66933678 None:intergenic 45.0%
AGAGAATGGACCCAAGTACT+TGG + chr5_3:66933660-66933679 None:intergenic 45.0%
TACTTGACTGGTGAGTTTCC+TGG - chr5_3:66933695-66933714 Msa0826540:CDS 45.0%
AGTTTCCTGGTGACTATGGA+TGG - chr5_3:66933708-66933727 Msa0826540:CDS 45.0%
GTTTCCTGGTGACTATGGAT+GGG - chr5_3:66933709-66933728 Msa0826540:CDS 45.0%
CTGATCCTGAAACCTTTGCA+AGG - chr5_3:66933750-66933769 Msa0826540:CDS 45.0%
CGTTCTTCTCAAGGATCTCA+GGG + chr5_3:66933838-66933857 None:intergenic 45.0%
CCTGAGATCCTTGAGAAGAA+CGG - chr5_3:66933836-66933855 Msa0826540:CDS 45.0%
! GAACGGTGTTAAATTCGGTG+AGG - chr5_3:66933853-66933872 Msa0826540:CDS 45.0%
! TTAAATTCGGTGAGGCTGTG+TGG - chr5_3:66933861-66933880 Msa0826540:CDS 45.0%
! TTGGGTTGCCCAAATAGTCA+AGG + chr5_3:66933922-66933941 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG + chr5_3:66933940-66933959 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG + chr5_3:66933952-66933971 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG - chr5_3:66933954-66933973 Msa0826540:CDS 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG - chr5_3:66933989-66934008 Msa0826540:CDS 45.0%
TCAACTCTGCGAATGCATCA+GGG + chr5_3:66934102-66934121 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG + chr5_3:66934103-66934122 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG - chr5_3:66934102-66934121 Msa0826540:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG - chr5_3:66934108-66934127 Msa0826540:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG - chr5_3:66934180-66934199 Msa0826540:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG - chr5_3:66934181-66934200 Msa0826540:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG + chr5_3:66934207-66934226 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG + chr5_3:66934208-66934227 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG - chr5_3:66934262-66934281 Msa0826540:intron 45.0%
ACAATGAGAACGCCAAGACA+TGG - chr5_3:66934285-66934304 Msa0826540:intron 45.0%
AGCAGAAGATTCAGCTCAAG+AGG + chr5_3:66934314-66934333 None:intergenic 45.0%
TGGTGTTCAGATCAATCAGG+TGG - chr5_3:66934665-66934684 Msa0826540:exon 45.0%
GTTCAGATCAATCAGGTGGT+AGG - chr5_3:66934669-66934688 Msa0826540:exon 45.0%
!! ATGAGGGCGTTGAGGTTTCT+TGG + chr5_3:66933154-66933173 None:intergenic 50.0%
AAGAAACCTCAACGCCCTCA+TGG - chr5_3:66933153-66933172 Msa0826540:three_prime_UTR 50.0%
! TGCCGGTGAATGCTGATTGT+TGG + chr5_3:66933192-66933211 None:intergenic 50.0%
ACTCTTCACAGTACGACGCA+TGG + chr5_3:66933281-66933300 None:intergenic 50.0%
!! AGAGTGCTCCTGAGAGCATT+TGG - chr5_3:66933296-66933315 Msa0826540:three_prime_UTR 50.0%
ATGGACCCAAGTACTTGGGA+CGG + chr5_3:66933655-66933674 None:intergenic 50.0%
GGTGAGTTTCCTGGTGACTA+TGG - chr5_3:66933704-66933723 Msa0826540:CDS 50.0%
CGGTTCCTTGCAAAGGTTTC+AGG + chr5_3:66933758-66933777 None:intergenic 50.0%
AAGCTCACGGTTCCTTGCAA+AGG + chr5_3:66933765-66933784 None:intergenic 50.0%
!! ATGGGCTATGCTTGGTGCAT+TGG - chr5_3:66933802-66933821 Msa0826540:CDS 50.0%
!! TGGGCTATGCTTGGTGCATT+GGG - chr5_3:66933803-66933822 Msa0826540:CDS 50.0%
CTTCTCAAGGATCTCAGGGA+AGG + chr5_3:66933834-66933853 None:intergenic 50.0%
CCGTTCTTCTCAAGGATCTC+AGG + chr5_3:66933839-66933858 None:intergenic 50.0%
! AGAGGGTGGCCTTGACTATT+TGG - chr5_3:66933910-66933929 Msa0826540:CDS 50.0%
! GAGGGTGGCCTTGACTATTT+GGG - chr5_3:66933911-66933930 Msa0826540:CDS 50.0%
CTCTGAGCATGGATCAGGTT+TGG + chr5_3:66933941-66933960 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG + chr5_3:66933946-66933965 None:intergenic 50.0%
TCTTGCAATCTGGGCTACAC+AGG - chr5_3:66933964-66933983 Msa0826540:CDS 50.0%
GCTACACAGGTTGTGCTCAT+GGG - chr5_3:66933977-66933996 Msa0826540:CDS 50.0%
GTTGAAGGCTACAGAGTTGG+TGG - chr5_3:66934004-66934023 Msa0826540:CDS 50.0%
AGCAAGACCAAGAGGGTCAA+AGG + chr5_3:66934074-66934093 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG + chr5_3:66934081-66934100 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG + chr5_3:66934219-66934238 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG + chr5_3:66934248-66934267 None:intergenic 50.0%
TCTTGGCGTTCTCATTGTCC+GGG + chr5_3:66934283-66934302 None:intergenic 50.0%
GTCTTGGCGTTCTCATTGTC+CGG + chr5_3:66934284-66934303 None:intergenic 50.0%
ATGAGAACGCCAAGACATGG+TGG - chr5_3:66934288-66934307 Msa0826540:intron 50.0%
CAAGCAGAAGAACCTGTCTG+TGG - chr5_3:66934386-66934405 Msa0826540:intron 50.0%
GTGGTAGGTAACAATGCACC+TGG - chr5_3:66934684-66934703 Msa0826540:five_prime_UTR 50.0%
!! ATGAGGGCGTTGAGGTTTCT+TGG + chr5_3:66933154-66933173 None:intergenic 50.0%
AAGAAACCTCAACGCCCTCA+TGG - chr5_3:66933153-66933172 Msa0826540:three_prime_UTR 50.0%
! TGCCGGTGAATGCTGATTGT+TGG + chr5_3:66933192-66933211 None:intergenic 50.0%
ACTCTTCACAGTACGACGCA+TGG + chr5_3:66933281-66933300 None:intergenic 50.0%
!! AGAGTGCTCCTGAGAGCATT+TGG - chr5_3:66933296-66933315 Msa0826540:three_prime_UTR 50.0%
ATGGACCCAAGTACTTGGGA+CGG + chr5_3:66933655-66933674 None:intergenic 50.0%
GGTGAGTTTCCTGGTGACTA+TGG - chr5_3:66933704-66933723 Msa0826540:CDS 50.0%
CGGTTCCTTGCAAAGGTTTC+AGG + chr5_3:66933758-66933777 None:intergenic 50.0%
AAGCTCACGGTTCCTTGCAA+AGG + chr5_3:66933765-66933784 None:intergenic 50.0%
!! ATGGGCTATGCTTGGTGCAT+TGG - chr5_3:66933802-66933821 Msa0826540:CDS 50.0%
!! TGGGCTATGCTTGGTGCATT+GGG - chr5_3:66933803-66933822 Msa0826540:CDS 50.0%
CTTCTCAAGGATCTCAGGGA+AGG + chr5_3:66933834-66933853 None:intergenic 50.0%
CCGTTCTTCTCAAGGATCTC+AGG + chr5_3:66933839-66933858 None:intergenic 50.0%
! AGAGGGTGGCCTTGACTATT+TGG - chr5_3:66933910-66933929 Msa0826540:CDS 50.0%
! GAGGGTGGCCTTGACTATTT+GGG - chr5_3:66933911-66933930 Msa0826540:CDS 50.0%
CTCTGAGCATGGATCAGGTT+TGG + chr5_3:66933941-66933960 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG + chr5_3:66933946-66933965 None:intergenic 50.0%
TCTTGCAATCTGGGCTACAC+AGG - chr5_3:66933964-66933983 Msa0826540:CDS 50.0%
GCTACACAGGTTGTGCTCAT+GGG - chr5_3:66933977-66933996 Msa0826540:CDS 50.0%
GTTGAAGGCTACAGAGTTGG+TGG - chr5_3:66934004-66934023 Msa0826540:CDS 50.0%
AGCAAGACCAAGAGGGTCAA+AGG + chr5_3:66934074-66934093 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG + chr5_3:66934081-66934100 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG + chr5_3:66934219-66934238 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG + chr5_3:66934248-66934267 None:intergenic 50.0%
TCTTGGCGTTCTCATTGTCC+GGG + chr5_3:66934283-66934302 None:intergenic 50.0%
GTCTTGGCGTTCTCATTGTC+CGG + chr5_3:66934284-66934303 None:intergenic 50.0%
ATGAGAACGCCAAGACATGG+TGG - chr5_3:66934288-66934307 Msa0826540:intron 50.0%
CAAGCAGAAGAACCTGTCTG+TGG - chr5_3:66934386-66934405 Msa0826540:intron 50.0%
GTGGTAGGTAACAATGCACC+TGG - chr5_3:66934684-66934703 Msa0826540:five_prime_UTR 50.0%
GATTGCAGAGGTGGCCATGA+GGG + chr5_3:66933170-66933189 None:intergenic 55.0%
TCAGCATTCACCGGCAAGAC+TGG - chr5_3:66933196-66933215 Msa0826540:three_prime_UTR 55.0%
CCAAGTACTTGGGACGGTCA+GGG + chr5_3:66933649-66933668 None:intergenic 55.0%
CCTGACCGTCCCAAGTACTT+GGG - chr5_3:66933647-66933666 Msa0826540:CDS 55.0%
GTGTCCCATCCATAGTCACC+AGG + chr5_3:66933716-66933735 None:intergenic 55.0%
GACTATGGATGGGACACAGC+TGG - chr5_3:66933719-66933738 Msa0826540:CDS 55.0%
!! CACAGCAGATGGGCTATGCT+TGG - chr5_3:66933794-66933813 Msa0826540:CDS 55.0%
CGGTGAGGCTGTGTGGTTTA+AGG - chr5_3:66933868-66933887 Msa0826540:CDS 55.0%
! GAGGCTGTGTGGTTTAAGGC+TGG - chr5_3:66933872-66933891 Msa0826540:CDS 55.0%
TGGTGCCCAGATCTTCTCAG+AGG - chr5_3:66933892-66933911 Msa0826540:CDS 55.0%
GGTGCCCAGATCTTCTCAGA+GGG - chr5_3:66933893-66933912 Msa0826540:CDS 55.0%
! GCCACCCTCTGAGAAGATCT+GGG + chr5_3:66933900-66933919 None:intergenic 55.0%
GGCTACACAGGTTGTGCTCA+TGG - chr5_3:66933976-66933995 Msa0826540:CDS 55.0%
!! GAAGGCTACAGAGTTGGTGG+AGG - chr5_3:66934007-66934026 Msa0826540:CDS 55.0%
!! AGAGTTGGTGGAGGACCACT+TGG - chr5_3:66934016-66934035 Msa0826540:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG + chr5_3:66934034-66934053 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG - chr5_3:66934043-66934062 Msa0826540:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG - chr5_3:66934046-66934065 Msa0826540:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG + chr5_3:66934054-66934073 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG + chr5_3:66934055-66934074 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG + chr5_3:66934082-66934101 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG - chr5_3:66934129-66934148 Msa0826540:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG + chr5_3:66934188-66934207 None:intergenic 55.0%
CTTGGCGTTCTCATTGTCCG+GGG + chr5_3:66934282-66934301 None:intergenic 55.0%
CTCAAGAGGCCACCATGTCT+TGG + chr5_3:66934300-66934319 None:intergenic 55.0%
GATTGCAGAGGTGGCCATGA+GGG + chr5_3:66933170-66933189 None:intergenic 55.0%
TCAGCATTCACCGGCAAGAC+TGG - chr5_3:66933196-66933215 Msa0826540:three_prime_UTR 55.0%
CCAAGTACTTGGGACGGTCA+GGG + chr5_3:66933649-66933668 None:intergenic 55.0%
CCTGACCGTCCCAAGTACTT+GGG - chr5_3:66933647-66933666 Msa0826540:CDS 55.0%
GTGTCCCATCCATAGTCACC+AGG + chr5_3:66933716-66933735 None:intergenic 55.0%
GACTATGGATGGGACACAGC+TGG - chr5_3:66933719-66933738 Msa0826540:CDS 55.0%
!! CACAGCAGATGGGCTATGCT+TGG - chr5_3:66933794-66933813 Msa0826540:CDS 55.0%
CGGTGAGGCTGTGTGGTTTA+AGG - chr5_3:66933868-66933887 Msa0826540:CDS 55.0%
! GAGGCTGTGTGGTTTAAGGC+TGG - chr5_3:66933872-66933891 Msa0826540:CDS 55.0%
TGGTGCCCAGATCTTCTCAG+AGG - chr5_3:66933892-66933911 Msa0826540:CDS 55.0%
GGTGCCCAGATCTTCTCAGA+GGG - chr5_3:66933893-66933912 Msa0826540:CDS 55.0%
! GCCACCCTCTGAGAAGATCT+GGG + chr5_3:66933900-66933919 None:intergenic 55.0%
GGCTACACAGGTTGTGCTCA+TGG - chr5_3:66933976-66933995 Msa0826540:CDS 55.0%
!! GAAGGCTACAGAGTTGGTGG+AGG - chr5_3:66934007-66934026 Msa0826540:CDS 55.0%
!! AGAGTTGGTGGAGGACCACT+TGG - chr5_3:66934016-66934035 Msa0826540:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG + chr5_3:66934034-66934053 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG - chr5_3:66934043-66934062 Msa0826540:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG - chr5_3:66934046-66934065 Msa0826540:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG + chr5_3:66934054-66934073 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG + chr5_3:66934055-66934074 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG + chr5_3:66934082-66934101 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG - chr5_3:66934129-66934148 Msa0826540:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG + chr5_3:66934188-66934207 None:intergenic 55.0%
CTTGGCGTTCTCATTGTCCG+GGG + chr5_3:66934282-66934301 None:intergenic 55.0%
CTCAAGAGGCCACCATGTCT+TGG + chr5_3:66934300-66934319 None:intergenic 55.0%
GGATTGCAGAGGTGGCCATG+AGG + chr5_3:66933171-66933190 None:intergenic 60.0%
CCCTGACCGTCCCAAGTACT+TGG - chr5_3:66933646-66933665 Msa0826540:CDS 60.0%
CCCAAGTACTTGGGACGGTC+AGG + chr5_3:66933650-66933669 None:intergenic 60.0%
GCCCAGATCTTCTCAGAGGG+TGG - chr5_3:66933896-66933915 Msa0826540:CDS 60.0%
! GGCCACCCTCTGAGAAGATC+TGG + chr5_3:66933901-66933920 None:intergenic 60.0%
! GGTGGAGGACCACTTGGTGA+AGG - chr5_3:66934022-66934041 Msa0826540:CDS 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG + chr5_3:66934063-66934082 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG + chr5_3:66934064-66934083 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG - chr5_3:66934064-66934083 Msa0826540:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG + chr5_3:66934228-66934247 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG - chr5_3:66934236-66934255 Msa0826540:intron 60.0%
CCCATGCGTTGTTGGCGACA+GGG + chr5_3:66934240-66934259 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG - chr5_3:66934237-66934256 Msa0826540:intron 60.0%
GGATTGCAGAGGTGGCCATG+AGG + chr5_3:66933171-66933190 None:intergenic 60.0%
CCCTGACCGTCCCAAGTACT+TGG - chr5_3:66933646-66933665 Msa0826540:CDS 60.0%
CCCAAGTACTTGGGACGGTC+AGG + chr5_3:66933650-66933669 None:intergenic 60.0%
GCCCAGATCTTCTCAGAGGG+TGG - chr5_3:66933896-66933915 Msa0826540:CDS 60.0%
! GGCCACCCTCTGAGAAGATC+TGG + chr5_3:66933901-66933920 None:intergenic 60.0%
! GGTGGAGGACCACTTGGTGA+AGG - chr5_3:66934022-66934041 Msa0826540:CDS 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG + chr5_3:66934063-66934082 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG + chr5_3:66934064-66934083 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG - chr5_3:66934064-66934083 Msa0826540:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG + chr5_3:66934228-66934247 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG - chr5_3:66934236-66934255 Msa0826540:intron 60.0%
CCCATGCGTTGTTGGCGACA+GGG + chr5_3:66934240-66934259 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG - chr5_3:66934237-66934256 Msa0826540:intron 60.0%
!! AGGTGGCCATGAGGGCGTTG+AGG + chr5_3:66933162-66933181 None:intergenic 65.0%
GCCCATGCGTTGTTGGCGAC+AGG + chr5_3:66934241-66934260 None:intergenic 65.0%
!! AGGTGGCCATGAGGGCGTTG+AGG + chr5_3:66933162-66933181 None:intergenic 65.0%
GCCCATGCGTTGTTGGCGAC+AGG + chr5_3:66934241-66934260 None:intergenic 65.0%
GGGACGGTCAGGGCCATACC+TGG + chr5_3:66933639-66933658 None:intergenic 70.0%
GGGACGGTCAGGGCCATACC+TGG + chr5_3:66933639-66933658 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66933113 66934733 66933113 ID=Msa0826540;Name=Msa0826540
chr5_3 mRNA 66933113 66934733 66933113 ID=Msa0826540-mRNA-1;Parent=Msa0826540;Name=Msa0826540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=59|1|1|1|1|1|2|442|265
chr5_3 exon 66933113 66934206 66933113 ID=Msa0826540-mRNA-1:exon:21040;Parent=Msa0826540-mRNA-1
chr5_3 exon 66934529 66934733 66934529 ID=Msa0826540-mRNA-1:exon:21039;Parent=Msa0826540-mRNA-1
chr5_3 five_prime_UTR 66934675 66934733 66934675 ID=Msa0826540-mRNA-1:five_prime_utr;Parent=Msa0826540-mRNA-1
chr5_3 CDS 66934529 66934674 66934529 ID=Msa0826540-mRNA-1:cds;Parent=Msa0826540-mRNA-1
chr5_3 CDS 66933555 66934206 66933555 ID=Msa0826540-mRNA-1:cds;Parent=Msa0826540-mRNA-1
chr5_3 three_prime_UTR 66933113 66933554 66933113 ID=Msa0826540-mRNA-1:three_prime_utr;Parent=Msa0826540-mRNA-1
Gene Sequence

>Msa0826540

ATGGCCACCTCTGCAATCCAACAATCAGCATTCACCGGCAAGACTGGTTTGAAACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGTCAAAGTCGCTTCACCATGCGTCGTACTGTGAAGAGTGCTCCTGAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAGCAAATTCCATCATACTTGACTGGTGAGTTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGATCCTGAAACCTTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGTGCATTGGGATGTACCTTCCCTGAGATCCTTGAGAAGAACGGTGTTAAATTCGGTGAGGCTGTGTGGTTTAAGGCTGGTGCCCAGATCTTCTCAGAGGGTGGCCTTGACTATTTGGGCAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACACAGGTTGTGCTCATGGGATTTGTTGAAGGCTACAGAGTTGGTGGAGGACCACTTGGTGAAGGACTAGACCCACTATACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTCGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACTGGCAAGGGCCCTGTTCAGAACCTTTACGACCATGTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATGA
Protein sequence

>Msa0826540

MATSAIQQSAFTGKTGLKQGNEFIRKAGNFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ*