AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262350 MtrunA17_Chr2g0324891 98.113 424 7 1 1 423 1 424 0.0 853
Msa0262350 MtrunA17_Chr4g0040481 60.762 446 125 19 1 421 1 421 1.72e-149 431
Msa0262350 MtrunA17_Chr5g0400241 36.194 268 126 8 154 416 305 532 3.10e-41 153
Msa0262350 MtrunA17_Chr4g0054981 32.479 351 180 15 91 421 235 548 4.45e-41 153
Msa0262350 MtrunA17_Chr3g0137101 50.000 74 37 0 154 227 192 265 1.83e-17 84.7
Msa0262350 MtrunA17_Chr2g0304841 37.190 121 72 2 155 274 208 325 4.50e-17 83.6
Msa0262350 MtrunA17_Chr1g0161431 56.061 66 29 0 153 218 193 258 2.29e-16 81.3
Msa0262350 MtrunA17_Chr4g0067981 45.977 87 45 1 159 243 214 300 3.48e-16 80.9
Msa0262350 MtrunA17_Chr4g0009851 39.362 94 54 2 124 216 134 225 1.11e-15 77.4
Msa0262350 MtrunA17_Chr1g0149841 53.030 66 31 0 157 222 188 253 1.53e-15 78.6
Msa0262350 MtrunA17_Chr7g0255711 51.667 60 29 0 159 218 90 149 5.30e-15 75.5
Msa0262350 MtrunA17_Chr4g0009981 44.000 75 40 1 142 216 100 172 1.46e-14 73.6
Msa0262350 MtrunA17_Chr4g0009901 43.678 87 44 1 130 216 143 224 2.57e-14 72.8
Msa0262350 MtrunA17_Chr4g0031961 43.038 79 43 1 159 237 130 206 3.59e-14 73.2
Msa0262350 MtrunA17_Chr2g0294911 53.333 60 28 0 159 218 210 269 4.34e-14 74.3
Msa0262350 MtrunA17_Chr8g0376881 46.377 69 37 0 159 227 208 276 1.06e-13 72.8
Msa0262350 MtrunA17_Chr7g0275891 33.571 140 71 5 155 275 186 322 2.05e-13 71.2
Msa0262350 MtrunA17_Chr4g0074411 34.247 146 81 5 109 242 140 282 7.81e-13 70.5
Msa0262350 MtrunA17_Chr4g0074401 50.909 55 27 0 158 212 201 255 8.88e-13 70.1
Msa0262350 MtrunA17_Chr3g0123131 43.662 71 40 0 159 229 198 268 1.14e-12 69.7
Msa0262350 MtrunA17_Chr3g0134481 51.064 47 23 0 165 211 137 183 3.71e-12 65.1
Msa0262350 MtrunA17_Chr6g0461641 54.545 55 24 1 162 215 44 98 4.48e-12 67.4
Msa0262350 MtrunA17_Chr6g0473731 45.205 73 39 1 159 231 94 165 6.64e-12 67.0
Msa0262350 MtrunA17_Chr4g0062921 43.056 72 40 1 146 216 221 292 7.73e-12 66.6
Msa0262350 MtrunA17_Chr1g0198601 50.000 60 29 1 158 216 209 268 7.83e-12 66.6
Msa0262350 MtrunA17_Chr7g0275401 33.929 112 67 2 111 216 138 248 1.10e-11 65.5
Msa0262350 MtrunA17_Chr5g0422621 35.922 103 58 2 122 216 153 255 1.10e-11 65.9
Msa0262350 MtrunA17_Chr2g0321461 53.846 52 23 1 162 212 47 98 2.23e-11 65.1
Msa0262350 MtrunA17_Chr4g0074421 31.944 144 58 5 106 209 39 182 2.74e-11 62.8
Msa0262350 MtrunA17_Chr4g0045361 49.180 61 30 1 159 218 273 333 3.35e-11 64.7
Msa0262350 MtrunA17_Chr3g0134461 49.057 53 27 0 157 209 140 192 4.22e-11 62.0
Msa0262350 MtrunA17_Chr1g0149831 45.455 66 33 1 157 222 125 187 4.25e-11 62.8
Msa0262350 MtrunA17_Chr4g0009991 44.118 68 36 1 142 209 51 116 4.95e-11 60.1
Msa0262350 MtrunA17_Chr1g0190301 49.153 59 29 1 158 215 173 231 5.29e-11 63.9
Msa0262350 MtrunA17_Chr2g0291021 53.704 54 24 1 160 212 49 102 5.73e-11 63.5
Msa0262350 MtrunA17_Chr5g0417521 53.846 52 23 1 162 212 17 68 6.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262350 AT2G20570.1 48.985 394 143 14 56 423 59 420 1.18e-92 286
Msa0262350 AT2G20570.2 47.073 410 143 15 56 423 59 436 1.69e-88 276
Msa0262350 AT5G44190.1 43.066 411 150 15 28 420 40 384 3.66e-73 234
Msa0262350 AT5G44190.2 45.126 277 100 10 28 294 40 274 2.86e-58 194
Msa0262350 AT2G20570.3 38.579 394 137 15 56 423 59 373 2.82e-49 172
Msa0262350 AT4G18020.3 32.383 386 193 12 60 421 183 524 1.56e-33 132
Msa0262350 AT4G18020.2 32.383 386 193 12 60 421 183 524 1.56e-33 132
Msa0262350 AT4G18020.1 32.383 386 193 12 60 421 183 524 1.56e-33 132
Msa0262350 AT4G18020.6 32.383 386 193 12 60 421 183 524 1.56e-33 132
Msa0262350 AT4G18020.9 32.383 386 193 12 60 421 183 524 1.56e-33 132
Msa0262350 AT4G18020.8 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT4G18020.11 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT4G18020.4 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT4G18020.5 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT4G18020.10 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT4G18020.7 31.879 298 156 8 60 328 183 462 2.63e-30 122
Msa0262350 AT5G59570.2 35.333 150 82 3 100 235 68 216 9.93e-19 86.7
Msa0262350 AT5G59570.1 35.333 150 82 3 100 235 68 216 9.93e-19 86.7
Msa0262350 AT5G58080.1 52.113 71 34 0 148 218 182 252 8.46e-17 83.2
Msa0262350 AT2G01760.3 54.688 64 29 0 155 218 130 193 8.03e-16 78.6
Msa0262350 AT4G31920.1 40.426 94 53 1 153 243 176 269 8.36e-16 79.7
Msa0262350 AT3G16857.3 46.250 80 43 0 139 218 146 225 1.08e-15 79.7
Msa0262350 AT3G16857.2 46.250 80 43 0 139 218 216 295 1.23e-15 79.7
Msa0262350 AT3G16857.1 46.250 80 43 0 139 218 216 295 1.44e-15 79.3
Msa0262350 AT2G01760.1 54.688 64 29 0 155 218 195 258 1.47e-15 78.2
Msa0262350 AT2G01760.2 54.688 64 29 0 155 218 223 286 1.68e-15 78.2
Msa0262350 AT3G10760.1 51.667 60 29 0 159 218 104 163 2.09e-15 77.4
Msa0262350 AT5G05090.1 51.667 60 29 0 159 218 80 139 2.60e-15 76.3
Msa0262350 AT2G25180.1 41.860 86 50 0 158 243 193 278 3.79e-15 77.8
Msa0262350 AT3G46640.2 32.258 155 83 4 84 231 76 215 4.44e-15 76.3
Msa0262350 AT3G46640.1 32.258 155 83 4 84 231 76 215 4.44e-15 76.3
Msa0262350 AT3G46640.3 32.258 155 83 4 84 231 76 215 1.14e-14 75.1
Msa0262350 AT2G40970.1 50.877 57 28 0 162 218 107 163 5.13e-14 72.0
Msa0262350 AT5G07210.2 49.296 71 32 1 159 229 221 287 5.24e-14 74.3
Msa0262350 AT5G07210.1 49.296 71 32 1 159 229 229 295 5.25e-14 74.3
Msa0262350 AT1G68670.1 36.508 126 68 4 137 260 193 308 1.39e-12 68.9
Msa0262350 AT1G13300.1 39.796 98 55 3 120 216 144 238 2.49e-12 68.2
Msa0262350 AT4G28610.1 46.377 69 36 1 148 215 213 281 3.54e-12 68.2
Msa0262350 AT3G04030.1 55.556 54 23 1 160 212 45 98 5.54e-12 67.4
Msa0262350 AT2G03500.1 47.887 71 32 2 147 216 224 290 5.62e-12 67.8
Msa0262350 AT3G04030.3 55.556 54 23 1 160 212 45 98 6.45e-12 67.4
Msa0262350 AT2G27070.1 49.180 61 31 0 159 219 224 284 6.70e-12 67.8
Msa0262350 AT5G18240.2 57.407 54 22 1 160 212 45 98 7.78e-12 67.0
Msa0262350 AT5G18240.3 57.407 54 22 1 160 212 45 98 7.78e-12 67.0
Msa0262350 AT3G62670.1 42.353 85 44 2 137 216 188 272 8.33e-12 67.0
Msa0262350 AT5G18240.5 57.407 54 22 1 160 212 45 98 8.64e-12 67.0
Msa0262350 AT5G18240.1 57.407 54 22 1 160 212 45 98 9.19e-12 67.0
Msa0262350 AT5G18240.4 57.407 54 22 1 160 212 45 98 9.19e-12 67.0
Msa0262350 AT1G25550.1 44.118 68 37 1 150 216 199 266 2.35e-11 65.1
Msa0262350 AT1G67710.2 53.448 58 26 1 162 218 130 187 3.23e-11 65.5
Msa0262350 AT1G67710.3 53.448 58 26 1 162 218 121 178 3.31e-11 65.5
Msa0262350 AT2G01060.1 49.180 61 29 2 153 212 9 68 4.13e-11 63.9
Msa0262350 AT1G67710.1 53.448 58 26 1 162 218 195 252 4.26e-11 65.1
Msa0262350 AT3G04030.2 50.943 53 26 0 160 212 45 97 9.31e-11 63.5

Find 213 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAAACTAAACCTTAAT+TGG 0.067573 2_2:-61189949 Msa0262350:five_prime_UTR
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2_2:-61188167 Msa0262350:CDS
CCGAATCTATTGATTATTTC+TGG 0.108883 2_2:-61185137 Msa0262350:three_prime_UTR
AAAATCCATGTAAACTATTT+AGG 0.179636 2_2:+61184662 None:intergenic
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2_2:-61189566 Msa0262350:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2_2:+61185670 None:intergenic
CTCACCAGCCACCGGTTAAC+TGG 0.189391 2_2:-61187536 Msa0262350:CDS
GCACAAGAGGGTGGAATATT+TGG 0.198256 2_2:+61185615 None:intergenic
ACGAATCTTCTGTGCAATTC+TGG 0.206442 2_2:+61188220 None:intergenic
GAAATATACGTATAAATTAT+TGG 0.210681 2_2:+61185056 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2_2:-61189331 Msa0262350:CDS
ATATGAAAATTCGTCGAATT+AGG 0.217599 2_2:+61185545 None:intergenic
GAGAATTCAGCAAGCATTTC+CGG 0.225150 2_2:+61189463 None:intergenic
GGAGATGATAATATGCTTAA+TGG 0.230451 2_2:-61184598 Msa0262350:three_prime_UTR
TCCTTAATGGACTTTGAAAA+TGG 0.246047 2_2:+61189995 None:intergenic
TGCCCCAGTTAACTTGTTCT+TGG 0.248820 2_2:+61184492 None:intergenic
TCCCTTGCCGCTTCCTAAAA+AGG 0.249720 2_2:-61190026 Msa0262350:five_prime_UTR
CATCTCATCATGCTCTTTCA+TGG 0.252993 2_2:-61184736 Msa0262350:three_prime_UTR
TATCATCTCCATATTGTAAA+TGG 0.255911 2_2:+61184611 None:intergenic
GAAGCAAAGTTTGGAGAATA+TGG 0.266653 2_2:-61184575 Msa0262350:three_prime_UTR
TTCTCCAAGAACAAGTTAAC+TGG 0.276501 2_2:-61184496 Msa0262350:three_prime_UTR
GGAACTAGTGCTCTCCTTAA+TGG 0.279221 2_2:+61189982 None:intergenic
AACTGGGGCATGTACATTAT+TGG 0.279686 2_2:-61184479 Msa0262350:three_prime_UTR
AATCATTGATCCAACAAGTA+TGG 0.281942 2_2:-61184969 Msa0262350:three_prime_UTR
GCTAGCATGATAATCCTATT+TGG 0.284706 2_2:+61189673 None:intergenic
CGACAACACCGGGATCTAAT+TGG 0.291081 2_2:+61186269 None:intergenic
GTAAGTATAGATCTTGGATT+TGG 0.291895 2_2:-61184859 Msa0262350:three_prime_UTR
AATCAAGAAACTAGCCAAAT+AGG 0.299124 2_2:-61189687 Msa0262350:five_prime_UTR
AGGTTTGAAGAAAATTTAAT+AGG 0.299976 2_2:+61185184 None:intergenic
GTGATATATGTGGGATTATA+AGG 0.300327 2_2:-61185382 Msa0262350:three_prime_UTR
TCTTGGAGAAATTAACTCTT+AGG 0.300580 2_2:+61184509 None:intergenic
AATTCTCCTCCATTTCTCTT+TGG 0.309622 2_2:+61189617 None:intergenic
TATGAAAATTCGTCGAATTA+GGG 0.311470 2_2:+61185546 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2_2:+61186586 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2_2:-61187677 Msa0262350:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2_2:+61187613 None:intergenic
CCAAGAGGCAATGGTAAATA+TGG 0.325980 2_2:+61185693 None:intergenic
AGAATAATATATAATATATT+AGG 0.330172 2_2:+61190197 None:intergenic
ATGATCGTCCATTTACAATA+TGG 0.340234 2_2:-61184619 Msa0262350:three_prime_UTR
ATCTTGTAATGATGGGAATA+TGG 0.342028 2_2:-61189389 Msa0262350:CDS
GCTTAATGGGAAGCAAAGTT+TGG 0.344249 2_2:-61184584 Msa0262350:three_prime_UTR
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2_2:-61186317 Msa0262350:CDS
AAATATACGTATAAATTATT+GGG 0.361138 2_2:+61185057 None:intergenic
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2_2:+61189247 None:intergenic
CGCGCAGGTGCCCAGTTAAC+CGG 0.365809 2_2:+61187525 None:intergenic
CGAATCTTCTGTGCAATTCT+GGG 0.366108 2_2:+61188221 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2_2:-61186316 Msa0262350:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2_2:-61186334 Msa0262350:intron
TCGTTAACCAACATACTAAC+TGG 0.374033 2_2:+61184808 None:intergenic
ATGAAATTTGAAAGGTGTAA+TGG 0.375705 2_2:+61190315 None:intergenic
GGAAGCGGCAAGGGAGTGTT+TGG 0.376181 2_2:+61190034 None:intergenic
TAGTGTTTCGAGCTCACTTT+AGG 0.380357 2_2:-61184532 Msa0262350:three_prime_UTR
GATTATACGATGAAGATGTT+AGG 0.380517 2_2:-61184890 Msa0262350:three_prime_UTR
GGCTGGTGAGGCGAATATTT+AGG 0.392643 2_2:+61187549 None:intergenic
TGGTTGAGTAGCTTTATATA+AGG 0.396238 2_2:-61184697 Msa0262350:three_prime_UTR
AATAGCAAATCTTGTAATGA+TGG 0.402167 2_2:-61189397 Msa0262350:CDS
CCACCCTCTTGTGCTTGAAC+AGG 0.402182 2_2:-61185606 Msa0262350:exon
GAGATGATAATATGCTTAAT+GGG 0.408831 2_2:-61184597 Msa0262350:three_prime_UTR
TTGATGAAAGCCGATTGATT+TGG 0.413035 2_2:+61185032 None:intergenic
AAAAGTAGAGAAGTAGCTAT+TGG 0.415038 2_2:-61185011 Msa0262350:three_prime_UTR
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2_2:+61186298 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2_2:+61189253 None:intergenic
CGAGGTGGAGCCGGCCGCGC+AGG 0.420132 2_2:+61187510 None:intergenic
ATTGTAAATGGACGATCATC+AGG 0.421349 2_2:+61184623 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2_2:+61188160 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2_2:+61186289 None:intergenic
CCAGCACTTGAAGGTGTAAT+GGG 0.424238 2_2:-61185660 Msa0262350:CDS
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2_2:-61187705 Msa0262350:CDS
AGATGAAAGCCAAAGAGAAA+TGG 0.427037 2_2:-61189626 Msa0262350:CDS
TGTTGGTCTACTAGACAGTA+TGG 0.428272 2_2:+61185452 None:intergenic
CCTCAGCAGCGGTGAGGAAT+CGG 0.431327 2_2:-61189440 Msa0262350:CDS
TCACTCACTCCCATACTTGT+TGG 0.433907 2_2:+61184959 None:intergenic
AGAATTCAGCAAGCATTTCC+GGG 0.434761 2_2:+61189464 None:intergenic
TTGACGGTAAGTATAGATCT+TGG 0.436780 2_2:-61184865 Msa0262350:three_prime_UTR
CCAGAAATAATCAATAGATT+CGG 0.440615 2_2:+61185137 None:intergenic
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2_2:+61186244 None:intergenic
CCATATTTACCATTGCCTCT+TGG 0.445286 2_2:-61185693 Msa0262350:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2_2:-61187723 Msa0262350:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2_2:-61187676 Msa0262350:CDS
TAAGTATAGATCTTGGATTT+GGG 0.447023 2_2:-61184858 Msa0262350:three_prime_UTR
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2_2:+61189259 None:intergenic
TCCAGCACTTGAAGGTGTAA+TGG 0.450202 2_2:-61185661 Msa0262350:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2_2:+61188116 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2_2:-61188188 Msa0262350:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2_2:-61187711 Msa0262350:CDS
ATCTAATTGGTACATGGCAT+GGG 0.454562 2_2:+61186282 None:intergenic
ATTGGTGAATGAGAACTCTA+TGG 0.456123 2_2:-61184461 Msa0262350:three_prime_UTR
TAACGATAACTTTACAATGA+AGG 0.461442 2_2:-61184791 Msa0262350:three_prime_UTR
CCCATTACACCTTCAAGTGC+TGG 0.466502 2_2:+61185660 None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2_2:-61185669 Msa0262350:CDS
GTATATTTCTCCAAATCAAT+CGG 0.472960 2_2:-61185042 Msa0262350:three_prime_UTR
AAGAAAACTAAACCTTAATT+GGG 0.474016 2_2:-61189948 Msa0262350:five_prime_UTR
CAACGACGGAGATGTGTTAC+CGG 0.474780 2_2:-61189500 Msa0262350:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2_2:+61186553 None:intergenic
CTCATTAATATCATCTTCCT+CGG 0.482000 2_2:+61185341 None:intergenic
ATGAAGGTAAATATTCAAAG+AGG 0.484530 2_2:-61184775 Msa0262350:three_prime_UTR
AAGCAAAGTTTGGAGAATAT+GGG 0.486078 2_2:-61184574 Msa0262350:three_prime_UTR
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2_2:-61187737 Msa0262350:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2_2:+61186232 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2_2:+61186307 None:intergenic
GTTGTGTAAATTAGGTGGAT+TGG 0.489509 2_2:-61188246 Msa0262350:intron
CGCTTCGTATTGGCATCAAC+GGG 0.497448 2_2:-61187484 Msa0262350:intron
TCCGGGTCCATCTCAAGATC+CGG 0.498896 2_2:+61189481 None:intergenic
ATTCAAAGAGGGCTCAAGTA+AGG 0.499377 2_2:-61184763 Msa0262350:three_prime_UTR
TAACATAATGTGATATATGT+GGG 0.500184 2_2:-61185391 Msa0262350:three_prime_UTR
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2_2:+61188125 None:intergenic
GAATCGGATATAAATTCATC+AGG 0.503029 2_2:-61189424 Msa0262350:CDS
TGCATAAACGACTGATCCAC+GGG 0.503874 2_2:+61187579 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2_2:+61189643 None:intergenic
AATATATACTTGAAGGTGGC+TGG 0.504816 2_2:+61188105 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2_2:-61187746 Msa0262350:CDS
GTGCCCAGTTAACCGGTGGC+TGG 0.505514 2_2:+61187532 None:intergenic
CATTGGGTTGCACCAACCAT+GGG 0.506502 2_2:-61187660 Msa0262350:CDS
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2_2:+61187633 None:intergenic
CCCGGTGTTGTCGTCCCCGC+CGG 0.509158 2_2:-61186259 Msa0262350:CDS
TAACTGGGCACCTGCGCGGC+CGG 0.510886 2_2:-61187520 Msa0262350:CDS
CCGGCGGGGACGACAACACC+GGG 0.512001 2_2:+61186259 None:intergenic
ATTGATTAATGAAATTTGAA+AGG 0.512527 2_2:+61190307 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2_2:+61186226 None:intergenic
CAATCAAAGAATAACCCTCA+TGG 0.515207 2_2:-61189211 Msa0262350:CDS
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2_2:-61189250 Msa0262350:CDS
GAAGATATAAATATTCATAG+AGG 0.516847 2_2:-61184439 Msa0262350:three_prime_UTR
TTTGGAAGAAGAAACTAGCT+TGG 0.516864 2_2:+61190052 None:intergenic
CTCTCCTGTTCAAGCACAAG+AGG 0.517323 2_2:+61185602 None:intergenic
CAGTTAACCGGTGGCTGGTG+AGG 0.517913 2_2:+61187537 None:intergenic
TGGATATCCAGTTAGTATGT+TGG 0.519257 2_2:-61184815 Msa0262350:three_prime_UTR
TTAACATAATGTGATATATG+TGG 0.520140 2_2:-61185392 Msa0262350:three_prime_UTR
CGATTCCTCACCGCTGCTGA+GGG 0.520384 2_2:+61189441 None:intergenic
GAAGCGTTACGAGGTGGAGC+CGG 0.525662 2_2:+61187501 None:intergenic
ATCATTGATCCAACAAGTAT+GGG 0.526231 2_2:-61184968 Msa0262350:three_prime_UTR
GACTTTGCTGATCTTTCTGA+AGG 0.529725 2_2:-61189577 Msa0262350:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2_2:-61189317 Msa0262350:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2_2:+61186240 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2_2:-61187661 Msa0262350:CDS
TCACCAGCCACCGGTTAACT+GGG 0.535693 2_2:-61187535 Msa0262350:CDS
GATCTAATTGGTACATGGCA+TGG 0.535864 2_2:+61186281 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2_2:-61187702 Msa0262350:CDS
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2_2:-61189396 Msa0262350:CDS
TATATAATATATTAGGCTTG+TGG 0.540218 2_2:+61190204 None:intergenic
TTACATGCTAGCTAGTAGCT+AGG 0.540287 2_2:+61189900 None:intergenic
CACCTCGTAACGCTTCGTAT+TGG 0.542098 2_2:-61187494 Msa0262350:CDS
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2_2:-61189514 Msa0262350:CDS
GAGAACCTAAATAGTTTACA+TGG 0.549056 2_2:-61184667 Msa0262350:three_prime_UTR
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2_2:+61188120 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2_2:+61187648 None:intergenic
ACCGGCGGGGACGACAACAC+CGG 0.556465 2_2:+61186258 None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2_2:+61187621 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2_2:+61187630 None:intergenic
TACATGCTAGCTAGTAGCTA+GGG 0.561312 2_2:+61189901 None:intergenic
GCTTTAAGGCCAAGAGGCAA+TGG 0.562818 2_2:+61185684 None:intergenic
AATCAAAGAATAACCCTCAT+GGG 0.562864 2_2:-61189210 Msa0262350:CDS
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2_2:+61188119 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2_2:+61186243 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2_2:+61187634 None:intergenic
TCTCCAAGAACAAGTTAACT+GGG 0.570958 2_2:-61184495 Msa0262350:three_prime_UTR
GCTCCAAATGCACCAACTGC+AGG 0.571552 2_2:-61186589 Msa0262350:CDS
CCGATTCCTCACCGCTGCTG+AGG 0.572056 2_2:+61189440 None:intergenic
TTTAGACCTTTACATGTATG+GGG 0.574340 2_2:-61187609 Msa0262350:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2_2:+61186577 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2_2:+61187578 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2_2:+61186303 None:intergenic
ACCGGGATCTAATTGGTACA+TGG 0.582780 2_2:+61186276 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2_2:-61186277 Msa0262350:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2_2:+61187629 None:intergenic
CATGAAAGAGCATGATGAGA+TGG 0.586637 2_2:+61184737 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2_2:-61189259 Msa0262350:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2_2:-61187572 Msa0262350:CDS
CTCTTGTGCTTGAACAGGAG+AGG 0.587776 2_2:-61185601 Msa0262350:exon
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2_2:-61189576 Msa0262350:CDS
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2_2:+61186562 None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG 0.591450 2_2:-61189623 Msa0262350:CDS
TGAAGGTAAATATTCAAAGA+GGG 0.594817 2_2:-61184774 Msa0262350:three_prime_UTR
ACGCTTCGTATTGGCATCAA+CGG 0.595156 2_2:-61187485 Msa0262350:CDS
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2_2:-61189488 Msa0262350:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2_2:-61188194 Msa0262350:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2_2:+61187624 None:intergenic
TAATATATTAGGCTTGTGGA+TGG 0.598491 2_2:+61190208 None:intergenic
GAGTAGCTTTATATAAGGCA+AGG 0.598857 2_2:-61184692 Msa0262350:three_prime_UTR
CCTGTTCAAGCACAAGAGGG+TGG 0.600264 2_2:+61185606 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2_2:+61186547 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2_2:-61186221 Msa0262350:intron
AATTGGTACATGGCATGGGG+TGG 0.606215 2_2:+61186286 None:intergenic
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2_2:-61189263 Msa0262350:CDS
TGCCAATACGAAGCGTTACG+AGG 0.614206 2_2:+61187492 None:intergenic
AAGATATAAATATTCATAGA+GGG 0.618158 2_2:-61184438 Msa0262350:three_prime_UTR
GAATCTTCTGTGCAATTCTG+GGG 0.619894 2_2:+61188222 None:intergenic
AGCAAAGTTTGGAGAATATG+GGG 0.621203 2_2:-61184573 Msa0262350:three_prime_UTR
GCTGAATTCTCCCTCAGCAG+CGG 0.622418 2_2:-61189451 Msa0262350:CDS
ATATTCGCCTCACCAGCCAC+CGG 0.625033 2_2:-61187544 Msa0262350:CDS
TCTCCTGTTCAAGCACAAGA+GGG 0.631508 2_2:+61185603 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2_2:-61187734 Msa0262350:CDS
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2_2:-61189194 Msa0262350:intron
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2_2:+61187644 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2_2:-61185642 Msa0262350:CDS
TGCTAGCTAGTAGCTAGGGT+AGG 0.645094 2_2:+61189905 None:intergenic
ACCGGATCTTGAGATGGACC+CGG 0.646579 2_2:-61189482 Msa0262350:CDS
TCTAATTGGTACATGGCATG+GGG 0.646732 2_2:+61186283 None:intergenic
GCAGGTGCCCAGTTAACCGG+TGG 0.647763 2_2:+61187528 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2_2:-61187608 Msa0262350:CDS
CGGTTAACTGGGCACCTGCG+CGG 0.649138 2_2:-61187524 Msa0262350:CDS
TTAATGAGACAAATAATGTG+AGG 0.659401 2_2:-61185326 Msa0262350:three_prime_UTR
AATGAATATATACTTGAAGG+TGG 0.660387 2_2:+61188101 None:intergenic
ATTCTCCCTCAGCAGCGGTG+AGG 0.665828 2_2:-61189446 Msa0262350:CDS
TAAACGACTGATCCACGGGA+TGG 0.666201 2_2:+61187583 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2_2:-61187785 Msa0262350:intron
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2_2:+61186220 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2_2:-61188199 Msa0262350:CDS
CTCCAAGAACAAGTTAACTG+GGG 0.686040 2_2:-61184494 Msa0262350:three_prime_UTR
AGGCAATGGATTCGGCACAA+CGG 0.686412 2_2:+61189267 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2_2:+61185678 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2_2:+61186245 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2_2:-61186554 Msa0262350:intron
CAATACGAAGCGTTACGAGG+TGG 0.710619 2_2:+61187495 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATTATTATTTTTGGA+AGG + chr2_2:61184602-61184621 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG - chr2_2:61185602-61185621 Msa0262350:exon 10.0%
!! TGAAAAGAAAAAAAAATTAA+GGG + chr2_2:61185653-61185672 None:intergenic 10.0%
!! TTGAAAAGAAAAAAAAATTA+AGG + chr2_2:61185654-61185673 None:intergenic 10.0%
!! AAATATACGTATAAATTATT+GGG + chr2_2:61189707-61189726 None:intergenic 10.0%
!! ATTGATTAATGAAATTTGAA+AGG + chr2_2:61184457-61184476 None:intergenic 15.0%
!! ATAGTTAGAATTATATTGTA+AGG - chr2_2:61185009-61185028 Msa0262350:three_prime_UTR 15.0%
!! TATAATAAACAATCAACAAA+GGG + chr2_2:61185681-61185700 None:intergenic 15.0%
!! TTATAATAAACAATCAACAA+AGG + chr2_2:61185682-61185701 None:intergenic 15.0%
!!! TCAATATATCATCAAAATTT+TGG + chr2_2:61187364-61187383 None:intergenic 15.0%
!!! CAAATAAAATGACTTTTATA+TGG + chr2_2:61187587-61187606 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG + chr2_2:61188126-61188145 None:intergenic 15.0%
!! TTAGACAAATAAAATGAAAT+AGG + chr2_2:61188127-61188146 None:intergenic 15.0%
!! TTAACTTATTCATATTATTG+AGG - chr2_2:61188389-61188408 Msa0262350:intron 15.0%
!! TAAAAGAAAAGAAAAATTAC+CGG + chr2_2:61188562-61188581 None:intergenic 15.0%
!!! CTATTTTCAAATAATGTTTT+AGG - chr2_2:61188703-61188722 Msa0262350:intron 15.0%
!! GAAATATACGTATAAATTAT+TGG + chr2_2:61189708-61189727 None:intergenic 15.0%
!! AAGATATAAATATTCATAGA+GGG - chr2_2:61190323-61190342 Msa0262350:five_prime_UTR 15.0%
!! TATATAATATATTAGGCTTG+TGG + chr2_2:61184560-61184579 None:intergenic 20.0%
!! AAGAAAACTAAACCTTAATT+GGG - chr2_2:61184813-61184832 Msa0262350:three_prime_UTR 20.0%
!!! GTAAGTACTCTTTTATTATA+TGG - chr2_2:61184880-61184899 Msa0262350:three_prime_UTR 20.0%
!! TTCATATTACCTAAATCATA+AGG + chr2_2:61185796-61185815 None:intergenic 20.0%
!!! ATTAACTCTCTAAAATTGTA+AGG + chr2_2:61186008-61186027 None:intergenic 20.0%
!!! AGATCTAAGAATTATTTCTT+AGG - chr2_2:61186183-61186202 Msa0262350:intron 20.0%
!! TAGTTAGTTAGATATGTAAT+AGG + chr2_2:61186385-61186404 None:intergenic 20.0%
!! CACTTTATTATTAAATTTGC+CGG - chr2_2:61186439-61186458 Msa0262350:intron 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG + chr2_2:61186604-61186623 None:intergenic 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG - chr2_2:61186603-61186622 Msa0262350:intron 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG - chr2_2:61186604-61186623 Msa0262350:intron 20.0%
!! GAAAATGAATATATACTTGA+AGG + chr2_2:61186666-61186685 None:intergenic 20.0%
!!! ACTTTTTTTTCAGTATATTG+AGG + chr2_2:61186709-61186728 None:intergenic 20.0%
!! ATCTACGTAAATTAAATTGT+TGG - chr2_2:61186833-61186852 Msa0262350:intron 20.0%
!! TTTACTATCCAATTAACTTA+GGG + chr2_2:61187620-61187639 None:intergenic 20.0%
!!! ACAAAAACTTAGTTTTTCTT+TGG - chr2_2:61187639-61187658 Msa0262350:CDS 20.0%
!! ATAAAATGAAATAGGGAATT+AGG + chr2_2:61188119-61188138 None:intergenic 20.0%
!! ACGAAAAACAACAAAATAAA+AGG + chr2_2:61188884-61188903 None:intergenic 20.0%
!!! ATTTTTGTTTTAACAGTCAA+AGG - chr2_2:61189007-61189026 Msa0262350:intron 20.0%
!! TTAACATAATGTGATATATG+TGG - chr2_2:61189369-61189388 Msa0262350:CDS 20.0%
!! TAACATAATGTGATATATGT+GGG - chr2_2:61189370-61189389 Msa0262350:CDS 20.0%
!! AGGTTTGAAGAAAATTTAAT+AGG + chr2_2:61189580-61189599 None:intergenic 20.0%
!!! TATACTTCCAAGAAAATTTT+AGG + chr2_2:61189600-61189619 None:intergenic 20.0%
!! AAAATCCATGTAAACTATTT+AGG + chr2_2:61190102-61190121 None:intergenic 20.0%
!! GAAGATATAAATATTCATAG+AGG - chr2_2:61190322-61190341 Msa0262350:five_prime_UTR 20.0%
!! ATGAAATTTGAAAGGTGTAA+TGG + chr2_2:61184449-61184468 None:intergenic 25.0%
! CAAACAAAAATCATAAGTTG+TGG - chr2_2:61184675-61184694 Msa0262350:three_prime_UTR 25.0%
! CAAGAAAACTAAACCTTAAT+TGG - chr2_2:61184812-61184831 Msa0262350:three_prime_UTR 25.0%
!!! TTTTTTGTGTTTATAGTGTG+TGG - chr2_2:61185046-61185065 Msa0262350:three_prime_UTR 25.0%
! AATAGCAAATCTTGTAATGA+TGG - chr2_2:61185364-61185383 Msa0262350:three_prime_UTR 25.0%
! ATAGCAAATCTTGTAATGAT+GGG - chr2_2:61185365-61185384 Msa0262350:three_prime_UTR 25.0%
! CAAAAATAGTTATTCCAACA+AGG + chr2_2:61185943-61185962 None:intergenic 25.0%
!! CTTGTTGGAATAACTATTTT+TGG - chr2_2:61185941-61185960 Msa0262350:intron 25.0%
! AGATTAACCAATCAATTTCA+GGG + chr2_2:61186135-61186154 None:intergenic 25.0%
! TAGATTAACCAATCAATTTC+AGG + chr2_2:61186136-61186155 None:intergenic 25.0%
!! TTTTTGAATGGTGAATCTAA+GGG + chr2_2:61186269-61186288 None:intergenic 25.0%
!!! TTTTTTGAATGGTGAATCTA+AGG + chr2_2:61186270-61186289 None:intergenic 25.0%
!!! CTTGATCACTATTTTTTGAA+TGG + chr2_2:61186281-61186300 None:intergenic 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG + chr2_2:61186345-61186364 None:intergenic 25.0%
! CATACTATAAAGTACAAATC+CGG + chr2_2:61186461-61186480 None:intergenic 25.0%
!!! ATGTGTTTATGTTTGTTGTT+GGG - chr2_2:61186493-61186512 Msa0262350:intron 25.0%
! AATGAATATATACTTGAAGG+TGG + chr2_2:61186663-61186682 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG - chr2_2:61186803-61186822 Msa0262350:intron 25.0%
! CGTAAATTTAAGCATCTAAT+GGG - chr2_2:61186804-61186823 Msa0262350:intron 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG - chr2_2:61186908-61186927 Msa0262350:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG - chr2_2:61186909-61186928 Msa0262350:intron 25.0%
! AAAGAGATATTGTGAATCAT+TGG - chr2_2:61187084-61187103 Msa0262350:intron 25.0%
! AAGAGATATTGTGAATCATT+GGG - chr2_2:61187085-61187104 Msa0262350:intron 25.0%
! ATACATGTAAAGGTCTAAAA+TGG + chr2_2:61187151-61187170 None:intergenic 25.0%
!! ATTTTAGACCTTTACATGTA+TGG - chr2_2:61187150-61187169 Msa0262350:intron 25.0%
!! TTTTAGACCTTTACATGTAT+GGG - chr2_2:61187151-61187170 Msa0262350:intron 25.0%
!! CAAAATTTTGGATCTCTTTT+GGG + chr2_2:61187352-61187371 None:intergenic 25.0%
!! TCAAAATTTTGGATCTCTTT+TGG + chr2_2:61187353-61187372 None:intergenic 25.0%
! TTATATGGAAAATACTTGTG+TGG + chr2_2:61187572-61187591 None:intergenic 25.0%
! GTTTACTATCCAATTAACTT+AGG + chr2_2:61187621-61187640 None:intergenic 25.0%
! AGTTAGGTCATACTTAATAA+CGG - chr2_2:61187679-61187698 Msa0262350:CDS 25.0%
! ACAATGAAGAGATTTAAATG+TGG + chr2_2:61187769-61187788 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG + chr2_2:61187936-61187955 None:intergenic 25.0%
! TGATCAAAATATAGCAGTTT+AGG - chr2_2:61187949-61187968 Msa0262350:intron 25.0%
! GATCAAAATATAGCAGTTTA+GGG - chr2_2:61187950-61187969 Msa0262350:intron 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG - chr2_2:61188150-61188169 Msa0262350:CDS 25.0%
! TTCACATAAGAATCCAAATT+TGG + chr2_2:61188281-61188300 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG - chr2_2:61188427-61188446 Msa0262350:intron 25.0%
!! CTTCTTATAATTGCTTTGAA+GGG - chr2_2:61188649-61188668 Msa0262350:intron 25.0%
! AAAGGTTGTATTTATAGACA+CGG + chr2_2:61188866-61188885 None:intergenic 25.0%
! TATGAAAATTCGTCGAATTA+GGG + chr2_2:61189218-61189237 None:intergenic 25.0%
! ATATGAAAATTCGTCGAATT+AGG + chr2_2:61189219-61189238 None:intergenic 25.0%
! TTAATGAGACAAATAATGTG+AGG - chr2_2:61189435-61189454 Msa0262350:CDS 25.0%
!! CTTCAAACCTAAAATTTTCT+TGG - chr2_2:61189590-61189609 Msa0262350:CDS 25.0%
! CCAGAAATAATCAATAGATT+CGG + chr2_2:61189627-61189646 None:intergenic 25.0%
! GTATATTTCTCCAAATCAAT+CGG - chr2_2:61189719-61189738 Msa0262350:intron 25.0%
!! CTTCAAAAAGTTTACGATTT+TGG - chr2_2:61189842-61189861 Msa0262350:intron 25.0%
! TAAGTATAGATCTTGGATTT+GGG - chr2_2:61189903-61189922 Msa0262350:intron 25.0%
! TAACGATAACTTTACAATGA+AGG - chr2_2:61189970-61189989 Msa0262350:five_prime_UTR 25.0%
! ATGAAGGTAAATATTCAAAG+AGG - chr2_2:61189986-61190005 Msa0262350:five_prime_UTR 25.0%
! TGAAGGTAAATATTCAAAGA+GGG - chr2_2:61189987-61190006 Msa0262350:five_prime_UTR 25.0%
! TATCATCTCCATATTGTAAA+TGG + chr2_2:61190153-61190172 None:intergenic 25.0%
! GAGATGATAATATGCTTAAT+GGG - chr2_2:61190164-61190183 Msa0262350:five_prime_UTR 25.0%
TAATATATTAGGCTTGTGGA+TGG + chr2_2:61184556-61184575 None:intergenic 30.0%
!! AATGGTAATGTTGCCTTTTT+AGG + chr2_2:61184751-61184770 None:intergenic 30.0%
! ACCATTTTCAAAGTCCATTA+AGG - chr2_2:61184765-61184784 Msa0262350:three_prime_UTR 30.0%
!! TCCTTAATGGACTTTGAAAA+TGG + chr2_2:61184769-61184788 None:intergenic 30.0%
! TAGTTTTCTTGTGAAAGAGA+TGG + chr2_2:61184803-61184822 None:intergenic 30.0%
!!! TGATTTTTTGCACCCAATTA+AGG + chr2_2:61184828-61184847 None:intergenic 30.0%
AATCAAGAAACTAGCCAAAT+AGG - chr2_2:61185074-61185093 Msa0262350:three_prime_UTR 30.0%
GAATCGGATATAAATTCATC+AGG - chr2_2:61185337-61185356 Msa0262350:three_prime_UTR 30.0%
! ATCTTGTAATGATGGGAATA+TGG - chr2_2:61185372-61185391 Msa0262350:three_prime_UTR 30.0%
AATCAAAGAATAACCCTCAT+GGG - chr2_2:61185551-61185570 Msa0262350:three_prime_UTR 30.0%
ATGGCAATACCTTATGATTT+AGG - chr2_2:61185784-61185803 Msa0262350:intron 30.0%
TTTGAATGCAAAAGAACTCA+CGG - chr2_2:61185882-61185901 Msa0262350:intron 30.0%
GATATATCTCATAACCTTGT+TGG - chr2_2:61185926-61185945 Msa0262350:intron 30.0%
TTGTTTGTTCCATGCATAAT+AGG - chr2_2:61186234-61186253 Msa0262350:CDS 30.0%
! TTTTGAATGGTGAATCTAAG+GGG + chr2_2:61186268-61186287 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG - chr2_2:61186334-61186353 Msa0262350:intron 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG + chr2_2:61186339-61186358 None:intergenic 30.0%
! GTGTGAATATATTTTGTGCT+GGG + chr2_2:61186412-61186431 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG + chr2_2:61186413-61186432 None:intergenic 30.0%
!! GATGTGTTTATGTTTGTTGT+TGG - chr2_2:61186492-61186511 Msa0262350:intron 30.0%
! TGAGGTTTGAAATTAAAGAG+AGG + chr2_2:61186691-61186710 None:intergenic 30.0%
! CAATTGTTTGGAACAAATAG+AGG - chr2_2:61187050-61187069 Msa0262350:intron 30.0%
TTTAGACCTTTACATGTATG+GGG - chr2_2:61187152-61187171 Msa0262350:intron 30.0%
TAAAAGGAGAAAGACTTATG+TGG - chr2_2:61187403-61187422 Msa0262350:intron 30.0%
CTCGAGACATAAAATTAGTT+AGG - chr2_2:61187663-61187682 Msa0262350:CDS 30.0%
GATTATGTTACAAACTTGCA+AGG - chr2_2:61187836-61187855 Msa0262350:intron 30.0%
! AGAATATGAATCCAAGCTTT+TGG + chr2_2:61187909-61187928 None:intergenic 30.0%
TTGTCTTCTACTTCCAAATT+TGG - chr2_2:61188265-61188284 Msa0262350:intron 30.0%
AGAAAAGAAAAATTACCGGA+TGG + chr2_2:61188558-61188577 None:intergenic 30.0%
GCTTCTTATAATTGCTTTGA+AGG - chr2_2:61188648-61188667 Msa0262350:intron 30.0%
! TCGAGTTAAACTTTTCATGT+TGG + chr2_2:61189329-61189348 None:intergenic 30.0%
GTGATATATGTGGGATTATA+AGG - chr2_2:61189379-61189398 Msa0262350:CDS 30.0%
! TAAGGCTGTGATTTTTGTAT+TGG - chr2_2:61189397-61189416 Msa0262350:CDS 30.0%
! CCGAATCTATTGATTATTTC+TGG - chr2_2:61189624-61189643 Msa0262350:CDS 30.0%
AAAAGTAGAGAAGTAGCTAT+TGG - chr2_2:61189750-61189769 Msa0262350:intron 30.0%
AATCATTGATCCAACAAGTA+TGG - chr2_2:61189792-61189811 Msa0262350:intron 30.0%
ATCATTGATCCAACAAGTAT+GGG - chr2_2:61189793-61189812 Msa0262350:intron 30.0%
GATTATACGATGAAGATGTT+AGG - chr2_2:61189871-61189890 Msa0262350:intron 30.0%
!! ATGAAGATGTTAGGTTTTGA+CGG - chr2_2:61189880-61189899 Msa0262350:intron 30.0%
GTAAGTATAGATCTTGGATT+TGG - chr2_2:61189902-61189921 Msa0262350:intron 30.0%
!! TTTCATGGTTTTACTACTGA+TGG - chr2_2:61190040-61190059 Msa0262350:five_prime_UTR 30.0%
!! TGGTTGAGTAGCTTTATATA+AGG - chr2_2:61190064-61190083 Msa0262350:five_prime_UTR 30.0%
GAGAACCTAAATAGTTTACA+TGG - chr2_2:61190094-61190113 Msa0262350:five_prime_UTR 30.0%
! TAGTTTACATGGATTTTCGT+TGG - chr2_2:61190105-61190124 Msa0262350:five_prime_UTR 30.0%
! AGTTTACATGGATTTTCGTT+GGG - chr2_2:61190106-61190125 Msa0262350:five_prime_UTR 30.0%
ATGATCGTCCATTTACAATA+TGG - chr2_2:61190142-61190161 Msa0262350:five_prime_UTR 30.0%
GGAGATGATAATATGCTTAA+TGG - chr2_2:61190163-61190182 Msa0262350:five_prime_UTR 30.0%
AAGCAAAGTTTGGAGAATAT+GGG - chr2_2:61190187-61190206 Msa0262350:five_prime_UTR 30.0%
TCTTGGAGAAATTAACTCTT+AGG + chr2_2:61190255-61190274 None:intergenic 30.0%
TTTGGAAGAAGAAACTAGCT+TGG + chr2_2:61184712-61184731 None:intergenic 35.0%
!! AATGTTGCCTTTTTAGGAAG+CGG + chr2_2:61184745-61184764 None:intergenic 35.0%
GCTAGCATGATAATCCTATT+TGG + chr2_2:61185091-61185110 None:intergenic 35.0%
TCATCTCTTATGCTACTCAA+TGG + chr2_2:61185121-61185140 None:intergenic 35.0%
AGATGAAAGCCAAAGAGAAA+TGG - chr2_2:61185135-61185154 Msa0262350:three_prime_UTR 35.0%
AATTCTCCTCCATTTCTCTT+TGG + chr2_2:61185147-61185166 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG - chr2_2:61185185-61185204 Msa0262350:three_prime_UTR 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG - chr2_2:61185195-61185214 Msa0262350:three_prime_UTR 35.0%
GTAGTTTCTTCTTCAGATTC+TGG - chr2_2:61185430-61185449 Msa0262350:three_prime_UTR 35.0%
CAATCAAAGAATAACCCTCA+TGG - chr2_2:61185550-61185569 Msa0262350:three_prime_UTR 35.0%
TTGAATGCAAAAGAACTCAC+GGG - chr2_2:61185883-61185902 Msa0262350:intron 35.0%
AGCCAGTCGATCTAAATTAA+CGG - chr2_2:61186096-61186115 Msa0262350:intron 35.0%
CATCTAACCCTGAAATTGAT+TGG - chr2_2:61186125-61186144 Msa0262350:intron 35.0%
GTACTCTAACCTATTATGCA+TGG + chr2_2:61186246-61186265 None:intergenic 35.0%
! CTTGGATTTTCTACTATTGG+TGG + chr2_2:61186321-61186340 None:intergenic 35.0%
! GGACTTGGATTTTCTACTAT+TGG + chr2_2:61186324-61186343 None:intergenic 35.0%
! GTTGTTGGGTTGTGTAAATT+AGG - chr2_2:61186507-61186526 Msa0262350:intron 35.0%
GTTGTGTAAATTAGGTGGAT+TGG - chr2_2:61186515-61186534 Msa0262350:intron 35.0%
AATATATACTTGAAGGTGGC+TGG + chr2_2:61186659-61186678 None:intergenic 35.0%
TGCAGAAATATAGATCGCAT+AGG - chr2_2:61186976-61186995 Msa0262350:intron 35.0%
! TTTGGAACAAATAGAGGAGT+TGG - chr2_2:61187056-61187075 Msa0262350:intron 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG + chr2_2:61187143-61187162 None:intergenic 35.0%
TTAGACCTTTACATGTATGG+GGG - chr2_2:61187153-61187172 Msa0262350:intron 35.0%
ATCAGTCGTTTATGCATATG+TGG - chr2_2:61187189-61187208 Msa0262350:intron 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr2_2:61187491-61187510 None:intergenic 35.0%
TCTCTTCTCTCTCATTTCTT+TGG - chr2_2:61187514-61187533 Msa0262350:CDS 35.0%
GAAAATACTTGTGTGGATCA+GGG + chr2_2:61187565-61187584 None:intergenic 35.0%
CTAGCAAACCCTAAGTTAAT+TGG - chr2_2:61187609-61187628 Msa0262350:CDS 35.0%
ATGAGTCTGTACTCAAAATG+TGG - chr2_2:61187741-61187760 Msa0262350:CDS 35.0%
GAAATAGGGAATTAGGAGAT+TGG + chr2_2:61188112-61188131 None:intergenic 35.0%
ATCTAATTGGTACATGGCAT+GGG + chr2_2:61188482-61188501 None:intergenic 35.0%
AGAGACAAGCAAGAAAATGA+CGG + chr2_2:61188780-61188799 None:intergenic 35.0%
! TGAATTCATGCTGTGTGTTT+TGG + chr2_2:61188825-61188844 None:intergenic 35.0%
CAAAACGTGAAATAAACTGC+TGG + chr2_2:61188917-61188936 None:intergenic 35.0%
ATGGGTGAATTACAGAAACA+AGG - chr2_2:61189119-61189138 Msa0262350:intron 35.0%
!!! TGTTTTTGGTTCATTGCACA+AGG - chr2_2:61189184-61189203 Msa0262350:intron 35.0%
TTGATGAAAGCCGATTGATT+TGG + chr2_2:61189732-61189751 None:intergenic 35.0%
TTGACGGTAAGTATAGATCT+TGG - chr2_2:61189896-61189915 Msa0262350:intron 35.0%
! CATGCACATGTTTTCTCATA+TGG - chr2_2:61189926-61189945 Msa0262350:five_prime_UTR 35.0%
TGGATATCCAGTTAGTATGT+TGG - chr2_2:61189946-61189965 Msa0262350:five_prime_UTR 35.0%
TCGTTAACCAACATACTAAC+TGG + chr2_2:61189956-61189975 None:intergenic 35.0%
!! ATGGTTTTACTACTGATGGA+TGG - chr2_2:61190044-61190063 Msa0262350:five_prime_UTR 35.0%
!! GAGTAGCTTTATATAAGGCA+AGG - chr2_2:61190069-61190088 Msa0262350:five_prime_UTR 35.0%
ATTGTAAATGGACGATCATC+AGG + chr2_2:61190141-61190160 None:intergenic 35.0%
GAAGCAAAGTTTGGAGAATA+TGG - chr2_2:61190186-61190205 Msa0262350:five_prime_UTR 35.0%
AGCAAAGTTTGGAGAATATG+GGG - chr2_2:61190188-61190207 Msa0262350:five_prime_UTR 35.0%
TTCTCCAAGAACAAGTTAAC+TGG - chr2_2:61190265-61190284 Msa0262350:five_prime_UTR 35.0%
TCTCCAAGAACAAGTTAACT+GGG - chr2_2:61190266-61190285 Msa0262350:five_prime_UTR 35.0%
ATTGGTGAATGAGAACTCTA+TGG - chr2_2:61190300-61190319 Msa0262350:five_prime_UTR 35.0%
TACATGCTAGCTAGTAGCTA+GGG + chr2_2:61184863-61184882 None:intergenic 40.0%
TTACATGCTAGCTAGTAGCT+AGG + chr2_2:61184864-61184883 None:intergenic 40.0%
TGAAAGCCAAAGAGAAATGG+AGG - chr2_2:61185138-61185157 Msa0262350:three_prime_UTR 40.0%
GACTTTGCTGATCTTTCTGA+AGG - chr2_2:61185184-61185203 Msa0262350:three_prime_UTR 40.0%
TTCTTCGTATGCTTCAACGA+CGG - chr2_2:61185247-61185266 Msa0262350:three_prime_UTR 40.0%
AGAATTCAGCAAGCATTTCC+GGG + chr2_2:61185300-61185319 None:intergenic 40.0%
GAGAATTCAGCAAGCATTTC+CGG + chr2_2:61185301-61185320 None:intergenic 40.0%
!! TCACTTTTCTCTTCCCATGA+GGG + chr2_2:61185567-61185586 None:intergenic 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG + chr2_2:61185568-61185587 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG - chr2_2:61185567-61185586 Msa0262350:three_prime_UTR 40.0%
TTTCTCCTTCTTTGAGCACA+TGG - chr2_2:61185765-61185784 Msa0262350:intron 40.0%
TATTGCCATGTGCTCAAAGA+AGG + chr2_2:61185773-61185792 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG + chr2_2:61185840-61185859 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG + chr2_2:61186101-61186120 None:intergenic 40.0%
GGAACAAACAAACACACAAG+AGG + chr2_2:61186225-61186244 None:intergenic 40.0%
! GTTGGGTTGTGTAAATTAGG+TGG - chr2_2:61186510-61186529 Msa0262350:intron 40.0%
GAATCTTCTGTGCAATTCTG+GGG + chr2_2:61186542-61186561 None:intergenic 40.0%
CGAATCTTCTGTGCAATTCT+GGG + chr2_2:61186543-61186562 None:intergenic 40.0%
ACGAATCTTCTGTGCAATTC+TGG + chr2_2:61186544-61186563 None:intergenic 40.0%
! GGCTGTACCTTCAAGAATTT+TGG - chr2_2:61186594-61186613 Msa0262350:intron 40.0%
AGTCAAAGGAGGCAATTGTT+TGG - chr2_2:61187038-61187057 Msa0262350:intron 40.0%
ATGCATAAACGACTGATCCA+CGG + chr2_2:61187186-61187205 None:intergenic 40.0%
TTTGGTTGTGACCACACAAT+GGG - chr2_2:61187532-61187551 Msa0262350:CDS 40.0%
GGAAAATACTTGTGTGGATC+AGG + chr2_2:61187566-61187585 None:intergenic 40.0%
ACAGCATAGAAGTTGTAGAG+AGG - chr2_2:61187791-61187810 Msa0262350:intron 40.0%
ACTTAGCTTCACCAAAAGCT+TGG - chr2_2:61187895-61187914 Msa0262350:intron 40.0%
ATAGTTACCGTTGTTGTCAG+AGG + chr2_2:61188217-61188236 None:intergenic 40.0%
TCTAATTGGTACATGGCATG+GGG + chr2_2:61188481-61188500 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG + chr2_2:61188483-61188502 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG + chr2_2:61188779-61188798 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG + chr2_2:61188812-61188831 None:intergenic 40.0%
CCAAGAGGCAATGGTAAATA+TGG + chr2_2:61189071-61189090 None:intergenic 40.0%
CCATATTTACCATTGCCTCT+TGG - chr2_2:61189068-61189087 Msa0262350:intron 40.0%
! TGAACAGGAGAGGATGTTTT+TGG - chr2_2:61189170-61189189 Msa0262350:intron 40.0%
! TGTTGGTCTACTAGACAGTA+TGG + chr2_2:61189312-61189331 None:intergenic 40.0%
!! TGTGATTTTTGTATTGGCCG+AGG - chr2_2:61189403-61189422 Msa0262350:CDS 40.0%
ATTCAAAGAGGGCTCAAGTA+AGG - chr2_2:61189998-61190017 Msa0262350:five_prime_UTR 40.0%
! CATGAAAGAGCATGATGAGA+TGG + chr2_2:61190027-61190046 None:intergenic 40.0%
CATCTCATCATGCTCTTTCA+TGG - chr2_2:61190025-61190044 Msa0262350:five_prime_UTR 40.0%
GCTTAATGGGAAGCAAAGTT+TGG - chr2_2:61190177-61190196 Msa0262350:five_prime_UTR 40.0%
TAGTGTTTCGAGCTCACTTT+AGG - chr2_2:61190229-61190248 Msa0262350:five_prime_UTR 40.0%
CTCCAAGAACAAGTTAACTG+GGG - chr2_2:61190267-61190286 Msa0262350:five_prime_UTR 40.0%
AACTGGGGCATGTACATTAT+TGG - chr2_2:61190282-61190301 Msa0262350:five_prime_UTR 40.0%
GGAACTAGTGCTCTCCTTAA+TGG + chr2_2:61184782-61184801 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG - chr2_2:61185273-61185292 Msa0262350:three_prime_UTR 45.0%
! CCTTCCTTAGGCAATGGATT+CGG + chr2_2:61185505-61185524 None:intergenic 45.0%
TTCTCACCTTCCTTAGGCAA+TGG + chr2_2:61185511-61185530 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG - chr2_2:61185511-61185530 Msa0262350:three_prime_UTR 45.0%
CTTCCTTTCTCACCTTCCTT+AGG + chr2_2:61185517-61185536 None:intergenic 45.0%
!! CGCAGAGGGTCTTTTGAAAA+GGG + chr2_2:61185722-61185741 None:intergenic 45.0%
GAGAAAAAACCTAGCGCAAG+TGG + chr2_2:61185751-61185770 None:intergenic 45.0%
GGAACAAATAGAGGAGTTGG+AGG - chr2_2:61187059-61187078 Msa0262350:intron 45.0%
! AAATGGTGTACTGGTGGCAT+GGG + chr2_2:61187134-61187153 None:intergenic 45.0%
! AAAATGGTGTACTGGTGGCA+TGG + chr2_2:61187135-61187154 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG + chr2_2:61187140-61187159 None:intergenic 45.0%
TGCATAAACGACTGATCCAC+GGG + chr2_2:61187185-61187204 None:intergenic 45.0%
! ACGCTTCGTATTGGCATCAA+CGG - chr2_2:61187276-61187295 Msa0262350:intron 45.0%
GAGAAAGACTTATGTGGACC+AGG - chr2_2:61187409-61187428 Msa0262350:intron 45.0%
TGTGACCAAACCCAATTGTG+TGG + chr2_2:61187436-61187455 None:intergenic 45.0%
CTTTGGTTGTGACCACACAA+TGG - chr2_2:61187531-61187550 Msa0262350:CDS 45.0%
TTGGTTGTGACCACACAATG+GGG - chr2_2:61187533-61187552 Msa0262350:CDS 45.0%
GCCATGTACCAATTAGATCC+CGG - chr2_2:61188484-61188503 Msa0262350:intron 45.0%
ACCGGGATCTAATTGGTACA+TGG + chr2_2:61188488-61188507 None:intergenic 45.0%
! CAAGCAAGAAAATGACGGGA+TGG + chr2_2:61188775-61188794 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG + chr2_2:61188809-61188828 None:intergenic 45.0%
!! CTTCAAGTGCTGGAGCTTTA+AGG + chr2_2:61189094-61189113 None:intergenic 45.0%
CTTAAAGCTCCAGCACTTGA+AGG - chr2_2:61189092-61189111 Msa0262350:intron 45.0%
! TCCAGCACTTGAAGGTGTAA+TGG - chr2_2:61189100-61189119 Msa0262350:intron 45.0%
! CCAGCACTTGAAGGTGTAAT+GGG - chr2_2:61189101-61189120 Msa0262350:intron 45.0%
GCACAAGAGGGTGGAATATT+TGG + chr2_2:61189149-61189168 None:intergenic 45.0%
TCTCCTGTTCAAGCACAAGA+GGG + chr2_2:61189161-61189180 None:intergenic 45.0%
TCACTCACTCCCATACTTGT+TGG + chr2_2:61189805-61189824 None:intergenic 45.0%
!! TGCCCCAGTTAACTTGTTCT+TGG + chr2_2:61190272-61190291 None:intergenic 45.0%
!! AAAAAAAATAAAATCAAAAT+TGG - chr2_2:61184523-61184542 Msa0262350:three_prime_UTR 5.0%
!! AGAATAATATATAATATATT+AGG + chr2_2:61184567-61184586 None:intergenic 5.0%
!!! CTATATAATATTATTATTTT+TGG + chr2_2:61184606-61184625 None:intergenic 5.0%
!!! TTAACATTTTTATATATAAA+AGG - chr2_2:61187387-61187406 Msa0262350:intron 5.0%
!!! AAACTATTAAATTTTATTTT+TGG - chr2_2:61188626-61188645 Msa0262350:intron 5.0%
!!! AAAAAAACTAATTTTTTTAA+TGG - chr2_2:61188674-61188693 Msa0262350:intron 5.0%
! TCCCTTGCCGCTTCCTAAAA+AGG - chr2_2:61184735-61184754 Msa0262350:three_prime_UTR 50.0%
!! GCCTTTTTAGGAAGCGGCAA+GGG + chr2_2:61184739-61184758 None:intergenic 50.0%
!! TGCCTTTTTAGGAAGCGGCA+AGG + chr2_2:61184740-61184759 None:intergenic 50.0%
TGCTAGCTAGTAGCTAGGGT+AGG + chr2_2:61184859-61184878 None:intergenic 50.0%
CAACGACGGAGATGTGTTAC+CGG - chr2_2:61185261-61185280 Msa0262350:three_prime_UTR 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG - chr2_2:61185444-61185463 Msa0262350:three_prime_UTR 50.0%
! AGGCAATGGATTCGGCACAA+CGG + chr2_2:61185497-61185516 None:intergenic 50.0%
TGTGCCGAATCCATTGCCTA+AGG - chr2_2:61185498-61185517 Msa0262350:three_prime_UTR 50.0%
CCGAATCCATTGCCTAAGGA+AGG - chr2_2:61185502-61185521 Msa0262350:three_prime_UTR 50.0%
!! GCGCAGAGGGTCTTTTGAAA+AGG + chr2_2:61185723-61185742 None:intergenic 50.0%
GCAAGTGGTTATTGCGCAGA+GGG + chr2_2:61185736-61185755 None:intergenic 50.0%
GTACAAGCAGTAGAGCAGCT+AGG - chr2_2:61186562-61186581 Msa0262350:CDS 50.0%
AGAGCAGCTAGGTGTGGATA+AGG - chr2_2:61186573-61186592 Msa0262350:CDS 50.0%
AAGCAGCAAGCTGGAGTCAA+AGG - chr2_2:61187024-61187043 Msa0262350:intron 50.0%
! TCATTGGGTTGCACCAACCA+TGG - chr2_2:61187100-61187119 Msa0262350:intron 50.0%
! CATTGGGTTGCACCAACCAT+GGG - chr2_2:61187101-61187120 Msa0262350:intron 50.0%
TGGTGCCCCCATACATGTAA+AGG + chr2_2:61187161-61187180 None:intergenic 50.0%
TAAACGACTGATCCACGGGA+TGG + chr2_2:61187181-61187200 None:intergenic 50.0%
GGCTGGTGAGGCGAATATTT+AGG + chr2_2:61187215-61187234 None:intergenic 50.0%
! CAATACGAAGCGTTACGAGG+TGG + chr2_2:61187269-61187288 None:intergenic 50.0%
CACCTCGTAACGCTTCGTAT+TGG - chr2_2:61187267-61187286 Msa0262350:intron 50.0%
! TGCCAATACGAAGCGTTACG+AGG + chr2_2:61187272-61187291 None:intergenic 50.0%
! CGCTTCGTATTGGCATCAAC+GGG - chr2_2:61187277-61187296 Msa0262350:intron 50.0%
TGGACCAGGACCACACAATT+GGG - chr2_2:61187423-61187442 Msa0262350:intron 50.0%
CAAACCCAATTGTGTGGTCC+TGG + chr2_2:61187430-61187449 None:intergenic 50.0%
CAGGACCACACAATTGGGTT+TGG - chr2_2:61187428-61187447 Msa0262350:intron 50.0%
TGTGACCACACAATGGGGTT+TGG - chr2_2:61187538-61187557 Msa0262350:CDS 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG + chr2_2:61188178-61188197 None:intergenic 50.0%
AAGCATGGTGTTCCTGCAGT+TGG + chr2_2:61188187-61188206 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG - chr2_2:61188207-61188226 Msa0262350:CDS 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG - chr2_2:61188444-61188463 Msa0262350:intron 50.0%
AATTGGTACATGGCATGGGG+TGG + chr2_2:61188478-61188497 None:intergenic 50.0%
CGACAACACCGGGATCTAAT+TGG + chr2_2:61188495-61188514 None:intergenic 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG + chr2_2:61188532-61188551 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG + chr2_2:61188538-61188557 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG - chr2_2:61188540-61188559 Msa0262350:intron 50.0%
ACCGGATGGAAGTCTAAGAG+AGG + chr2_2:61188544-61188563 None:intergenic 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG + chr2_2:61188805-61188824 None:intergenic 50.0%
!! GCTTTAAGGCCAAGAGGCAA+TGG + chr2_2:61189080-61189099 None:intergenic 50.0%
CCCATTACACCTTCAAGTGC+TGG + chr2_2:61189104-61189123 None:intergenic 50.0%
CTCTCCTGTTCAAGCACAAG+AGG + chr2_2:61189162-61189181 None:intergenic 50.0%
CTCTTGTGCTTGAACAGGAG+AGG - chr2_2:61189160-61189179 Msa0262350:intron 50.0%
ACCGGATCTTGAGATGGACC+CGG - chr2_2:61185279-61185298 Msa0262350:three_prime_UTR 55.0%
TCCGGGTCCATCTCAAGATC+CGG + chr2_2:61185283-61185302 None:intergenic 55.0%
GCTGAATTCTCCCTCAGCAG+CGG - chr2_2:61185310-61185329 Msa0262350:three_prime_UTR 55.0%
CGCAAGTGGTTATTGCGCAG+AGG + chr2_2:61185737-61185756 None:intergenic 55.0%
GCGCAATAACCACTTGCGCT+AGG - chr2_2:61185739-61185758 Msa0262350:CDS 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG - chr2_2:61186567-61186586 Msa0262350:CDS 55.0%
GAAGGTGGCTGGCGATGTTA+TGG + chr2_2:61186648-61186667 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG - chr2_2:61187015-61187034 Msa0262350:intron 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG - chr2_2:61187027-61187046 Msa0262350:intron 55.0%
ATGGGAGGGAAACCCATGGT+TGG + chr2_2:61187116-61187135 None:intergenic 55.0%
ATATTCGCCTCACCAGCCAC+CGG - chr2_2:61187217-61187236 Msa0262350:intron 55.0%
! TCACCAGCCACCGGTTAACT+GGG - chr2_2:61187226-61187245 Msa0262350:intron 55.0%
GTGGACCAGGACCACACAAT+TGG - chr2_2:61187422-61187441 Msa0262350:intron 55.0%
AGGGACCAAACCCCATTGTG+TGG + chr2_2:61187546-61187565 None:intergenic 55.0%
GCTCCAAATGCACCAACTGC+AGG - chr2_2:61188172-61188191 Msa0262350:CDS 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG + chr2_2:61188202-61188221 None:intergenic 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG + chr2_2:61188211-61188230 None:intergenic 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG - chr2_2:61188445-61188464 Msa0262350:intron 55.0%
AGGCTGAGGAGATGGTTGAC+CGG + chr2_2:61188524-61188543 None:intergenic 55.0%
!! GCTGGAGCTTTAAGGCCAAG+AGG + chr2_2:61189086-61189105 None:intergenic 55.0%
CCTGTTCAAGCACAAGAGGG+TGG + chr2_2:61189158-61189177 None:intergenic 55.0%
CCACCCTCTTGTGCTTGAAC+AGG - chr2_2:61189155-61189174 Msa0262350:intron 55.0%
!! GGAAGCGGCAAGGGAGTGTT+TGG + chr2_2:61184730-61184749 None:intergenic 60.0%
ATTCTCCCTCAGCAGCGGTG+AGG - chr2_2:61185315-61185334 Msa0262350:three_prime_UTR 60.0%
CGATTCCTCACCGCTGCTGA+GGG + chr2_2:61185323-61185342 None:intergenic 60.0%
CCTCAGCAGCGGTGAGGAAT+CGG - chr2_2:61185321-61185340 Msa0262350:three_prime_UTR 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG + chr2_2:61186639-61186658 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG + chr2_2:61186644-61186663 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG + chr2_2:61186645-61186664 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG + chr2_2:61187120-61187139 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG + chr2_2:61187130-61187149 None:intergenic 60.0%
! TGGTGTACTGGTGGCATGGG+AGG + chr2_2:61187131-61187150 None:intergenic 60.0%
CAGTTAACCGGTGGCTGGTG+AGG + chr2_2:61187227-61187246 None:intergenic 60.0%
! CTCACCAGCCACCGGTTAAC+TGG - chr2_2:61187225-61187244 Msa0262350:intron 60.0%
! GAAGCGTTACGAGGTGGAGC+CGG + chr2_2:61187263-61187282 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG + chr2_2:61188475-61188494 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG + chr2_2:61188520-61188539 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG + chr2_2:61188521-61188540 None:intergenic 60.0%
CCGATTCCTCACCGCTGCTG+AGG + chr2_2:61185324-61185343 None:intergenic 65.0%
!! TGTATGGGGGCACCATCCCG+TGG - chr2_2:61187166-61187185 Msa0262350:intron 65.0%
GTGCCCAGTTAACCGGTGGC+TGG + chr2_2:61187232-61187251 None:intergenic 65.0%
GCAGGTGCCCAGTTAACCGG+TGG + chr2_2:61187236-61187255 None:intergenic 65.0%
CGCGCAGGTGCCCAGTTAAC+CGG + chr2_2:61187239-61187258 None:intergenic 65.0%
CGGTTAACTGGGCACCTGCG+CGG - chr2_2:61187237-61187256 Msa0262350:intron 65.0%
GGTGGAATGCCCGGAACGGT+TGG + chr2_2:61188457-61188476 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG + chr2_2:61188461-61188480 None:intergenic 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG + chr2_2:61188466-61188485 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG + chr2_2:61188519-61188538 None:intergenic 65.0%
TAACTGGGCACCTGCGCGGC+CGG - chr2_2:61187241-61187260 Msa0262350:intron 70.0%
ACCGGCGGGGACGACAACAC+CGG + chr2_2:61188506-61188525 None:intergenic 70.0%
CCGGCGGGGACGACAACACC+GGG + chr2_2:61188505-61188524 None:intergenic 75.0%
!! CCCGGTGTTGTCGTCCCCGC+CGG - chr2_2:61188502-61188521 Msa0262350:intron 75.0%
! CGAGGTGGAGCCGGCCGCGC+AGG + chr2_2:61187254-61187273 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 61184430 61190353 61184430 ID=Msa0262350;Name=Msa0262350
chr2_2 mRNA 61184430 61190353 61184430 ID=Msa0262350-mRNA-1;Parent=Msa0262350;Name=Msa0262350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=491|1|1|1|0.83|0.71|7|1181|423
chr2_2 exon 61184430 61185760 61184430 ID=Msa0262350-mRNA-1:exon:18866;Parent=Msa0262350-mRNA-1
chr2_2 exon 61186222 61186341 61186222 ID=Msa0262350-mRNA-1:exon:18865;Parent=Msa0262350-mRNA-1
chr2_2 exon 61186555 61186611 61186555 ID=Msa0262350-mRNA-1:exon:18864;Parent=Msa0262350-mRNA-1
chr2_2 exon 61187485 61187802 61187485 ID=Msa0262350-mRNA-1:exon:18863;Parent=Msa0262350-mRNA-1
chr2_2 exon 61188114 61188254 61188114 ID=Msa0262350-mRNA-1:exon:18862;Parent=Msa0262350-mRNA-1
chr2_2 exon 61189195 61189721 61189195 ID=Msa0262350-mRNA-1:exon:18861;Parent=Msa0262350-mRNA-1
chr2_2 exon 61189904 61190353 61189904 ID=Msa0262350-mRNA-1:exon:18860;Parent=Msa0262350-mRNA-1
chr2_2 five_prime_UTR 61189904 61190353 61189904 ID=Msa0262350-mRNA-1:five_prime_utr;Parent=Msa0262350-mRNA-1
chr2_2 five_prime_UTR 61189681 61189721 61189681 ID=Msa0262350-mRNA-1:five_prime_utr;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61189195 61189680 61189195 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61188114 61188254 61188114 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61187485 61187802 61187485 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61186555 61186611 61186555 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61186222 61186341 61186222 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 CDS 61185611 61185760 61185611 ID=Msa0262350-mRNA-1:cds;Parent=Msa0262350-mRNA-1
chr2_2 three_prime_UTR 61184430 61185610 61184430 ID=Msa0262350-mRNA-1:three_prime_utr;Parent=Msa0262350-mRNA-1
Gene Sequence

>Msa0262350

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAACCCTCATGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACCGGTTAACTGGGCACCTGCGCGGCCGGCTCCACCTCGTAACGCTTCGTATTGGCATCAACGGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA
Protein sequence

>Msa0262350

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSGEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPPVNWAPARPAPPRNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA*