AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225190 MtrunA17_Chr2g0324891 97.877 424 8 1 1 423 1 424 0.0 850
Msa0225190 MtrunA17_Chr4g0040481 60.538 446 126 19 1 421 1 421 1.98e-148 428
Msa0225190 MtrunA17_Chr5g0400241 36.194 268 126 8 154 416 305 532 2.36e-41 154
Msa0225190 MtrunA17_Chr4g0054981 32.479 351 180 15 91 421 235 548 9.05e-41 152
Msa0225190 MtrunA17_Chr3g0137101 50.000 74 37 0 154 227 192 265 1.88e-17 84.7
Msa0225190 MtrunA17_Chr2g0304841 36.885 122 73 2 155 275 208 326 4.19e-17 83.6
Msa0225190 MtrunA17_Chr1g0161431 56.061 66 29 0 153 218 193 258 2.46e-16 81.3
Msa0225190 MtrunA17_Chr4g0067981 58.333 60 25 0 159 218 214 273 4.09e-16 80.5
Msa0225190 MtrunA17_Chr4g0009851 39.362 94 54 2 124 216 134 225 1.03e-15 77.4
Msa0225190 MtrunA17_Chr1g0149841 53.030 66 31 0 157 222 188 253 1.48e-15 78.6
Msa0225190 MtrunA17_Chr7g0255711 51.667 60 29 0 159 218 90 149 4.96e-15 75.5
Msa0225190 MtrunA17_Chr4g0009981 44.000 75 40 1 142 216 100 172 1.31e-14 73.6
Msa0225190 MtrunA17_Chr4g0009901 43.678 87 44 1 130 216 143 224 2.19e-14 73.2
Msa0225190 MtrunA17_Chr4g0031961 43.038 79 43 1 159 237 130 206 3.52e-14 73.2
Msa0225190 MtrunA17_Chr2g0294911 53.333 60 28 0 159 218 210 269 4.08e-14 74.3
Msa0225190 MtrunA17_Chr8g0376881 46.377 69 37 0 159 227 208 276 1.03e-13 72.8
Msa0225190 MtrunA17_Chr7g0275891 33.571 140 71 5 155 275 186 322 2.33e-13 70.9
Msa0225190 MtrunA17_Chr4g0074411 34.247 146 81 5 109 242 140 282 6.42e-13 70.5
Msa0225190 MtrunA17_Chr4g0074401 50.909 55 27 0 158 212 201 255 8.42e-13 70.1
Msa0225190 MtrunA17_Chr3g0123131 43.662 71 40 0 159 229 198 268 1.08e-12 69.7
Msa0225190 MtrunA17_Chr3g0134481 51.064 47 23 0 165 211 137 183 3.71e-12 65.1
Msa0225190 MtrunA17_Chr6g0461641 54.545 55 24 1 162 215 44 98 4.86e-12 67.4
Msa0225190 MtrunA17_Chr1g0198601 50.000 60 29 1 158 216 209 268 6.91e-12 66.6
Msa0225190 MtrunA17_Chr6g0473731 45.205 73 39 1 159 231 94 165 7.00e-12 67.0
Msa0225190 MtrunA17_Chr4g0062921 43.056 72 40 1 146 216 221 292 7.45e-12 67.0
Msa0225190 MtrunA17_Chr5g0422621 35.922 103 58 2 122 216 153 255 1.03e-11 65.9
Msa0225190 MtrunA17_Chr7g0275401 33.929 112 67 2 111 216 138 248 1.05e-11 65.5
Msa0225190 MtrunA17_Chr2g0321461 53.846 52 23 1 162 212 47 98 2.17e-11 65.1
Msa0225190 MtrunA17_Chr4g0074421 31.944 144 58 5 106 209 39 182 2.35e-11 62.8
Msa0225190 MtrunA17_Chr4g0045361 49.180 61 30 1 159 218 273 333 2.86e-11 65.1
Msa0225190 MtrunA17_Chr1g0149831 45.455 66 33 1 157 222 125 187 4.13e-11 62.8
Msa0225190 MtrunA17_Chr3g0134461 49.057 53 27 0 157 209 140 192 4.26e-11 62.0
Msa0225190 MtrunA17_Chr4g0009991 44.118 68 36 1 142 209 51 116 4.85e-11 60.1
Msa0225190 MtrunA17_Chr1g0190301 49.153 59 29 1 158 215 173 231 5.02e-11 63.9
Msa0225190 MtrunA17_Chr2g0291021 53.704 54 24 1 160 212 49 102 5.05e-11 63.5
Msa0225190 MtrunA17_Chr5g0417521 53.846 52 23 1 162 212 17 68 6.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225190 AT2G20570.1 48.731 394 144 14 56 423 59 420 3.70e-92 285
Msa0225190 AT2G20570.2 46.829 410 144 15 56 423 59 436 4.76e-88 275
Msa0225190 AT5G44190.1 42.822 411 151 16 28 420 40 384 3.29e-73 234
Msa0225190 AT5G44190.2 41.875 320 117 13 28 329 40 308 2.92e-58 194
Msa0225190 AT2G20570.3 38.325 394 138 15 56 423 59 373 8.22e-49 170
Msa0225190 AT4G18020.3 34.555 382 185 15 55 421 193 524 2.93e-34 134
Msa0225190 AT4G18020.2 34.555 382 185 15 55 421 193 524 2.93e-34 134
Msa0225190 AT4G18020.1 34.555 382 185 15 55 421 193 524 2.93e-34 134
Msa0225190 AT4G18020.6 34.555 382 185 15 55 421 193 524 2.93e-34 134
Msa0225190 AT4G18020.9 34.555 382 185 15 55 421 193 524 2.93e-34 134
Msa0225190 AT4G18020.8 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT4G18020.11 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT4G18020.4 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT4G18020.5 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT4G18020.10 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT4G18020.7 33.538 325 161 14 55 364 193 477 2.79e-30 122
Msa0225190 AT5G59570.2 35.333 150 82 3 100 235 68 216 1.12e-18 86.7
Msa0225190 AT5G59570.1 35.333 150 82 3 100 235 68 216 1.12e-18 86.7
Msa0225190 AT5G58080.1 52.113 71 34 0 148 218 182 252 7.33e-17 83.2
Msa0225190 AT2G01760.3 54.688 64 29 0 155 218 130 193 8.41e-16 78.2
Msa0225190 AT4G31920.1 33.588 131 76 2 116 243 147 269 8.98e-16 79.7
Msa0225190 AT3G16857.3 46.250 80 43 0 139 218 146 225 1.06e-15 79.7
Msa0225190 AT3G16857.2 46.250 80 43 0 139 218 216 295 1.25e-15 79.7
Msa0225190 AT2G01760.1 54.688 64 29 0 155 218 195 258 1.47e-15 78.2
Msa0225190 AT3G16857.1 46.250 80 43 0 139 218 216 295 1.48e-15 79.3
Msa0225190 AT2G01760.2 54.688 64 29 0 155 218 223 286 1.74e-15 78.2
Msa0225190 AT3G10760.1 51.667 60 29 0 159 218 104 163 2.03e-15 77.4
Msa0225190 AT5G05090.1 51.667 60 29 0 159 218 80 139 2.46e-15 76.3
Msa0225190 AT2G25180.1 41.860 86 50 0 158 243 193 278 3.62e-15 78.2
Msa0225190 AT3G46640.2 43.836 73 41 0 159 231 143 215 9.87e-15 75.1
Msa0225190 AT3G46640.1 43.836 73 41 0 159 231 143 215 9.87e-15 75.1
Msa0225190 AT3G46640.3 43.836 73 41 0 159 231 143 215 2.03e-14 74.3
Msa0225190 AT5G07210.1 49.296 71 32 1 159 229 229 295 4.93e-14 74.3
Msa0225190 AT2G40970.1 50.877 57 28 0 162 218 107 163 4.98e-14 72.0
Msa0225190 AT5G07210.2 49.296 71 32 1 159 229 221 287 5.10e-14 74.3
Msa0225190 AT1G68670.1 36.508 126 68 4 137 260 193 308 1.20e-12 69.3
Msa0225190 AT1G13300.1 39.796 98 55 3 120 216 144 238 1.88e-12 68.6
Msa0225190 AT4G28610.1 46.377 69 36 1 148 215 213 281 3.36e-12 68.2
Msa0225190 AT2G03500.1 47.887 71 32 2 147 216 224 290 5.19e-12 67.8
Msa0225190 AT3G04030.1 55.556 54 23 1 160 212 45 98 5.91e-12 67.4
Msa0225190 AT2G27070.1 49.180 61 31 0 159 219 224 284 6.94e-12 67.8
Msa0225190 AT3G04030.3 55.769 52 22 1 162 212 47 98 6.99e-12 67.0
Msa0225190 AT3G62670.1 42.353 85 44 2 137 216 188 272 7.89e-12 67.0
Msa0225190 AT5G18240.2 57.407 54 22 1 160 212 45 98 8.21e-12 67.0
Msa0225190 AT5G18240.3 57.407 54 22 1 160 212 45 98 8.21e-12 67.0
Msa0225190 AT5G18240.5 57.407 54 22 1 160 212 45 98 8.72e-12 67.0
Msa0225190 AT5G18240.1 57.407 54 22 1 160 212 45 98 9.70e-12 66.6
Msa0225190 AT5G18240.4 57.407 54 22 1 160 212 45 98 9.70e-12 66.6
Msa0225190 AT1G25550.1 44.118 68 37 1 150 216 199 266 2.20e-11 65.5
Msa0225190 AT1G67710.3 53.448 58 26 1 162 218 121 178 3.13e-11 65.5
Msa0225190 AT1G67710.2 53.448 58 26 1 162 218 130 187 3.20e-11 65.5
Msa0225190 AT2G01060.1 49.180 61 29 2 153 212 9 68 3.69e-11 63.9
Msa0225190 AT1G67710.1 53.448 58 26 1 162 218 195 252 4.04e-11 65.1
Msa0225190 AT3G04030.2 50.943 53 26 0 160 212 45 97 9.31e-11 63.5

Find 209 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAAACTAAACCTTAAT+TGG 0.067573 2_1:-75261868 Msa0225190:five_prime_UTR
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2_1:-75259707 Msa0225190:CDS
CCGAATCTATTGATTATTTC+TGG 0.108883 2_1:-75256697 Msa0225190:three_prime_UTR
GAGAATTCAGCAAGCATTTC+TGG 0.158307 2_1:+75261370 None:intergenic
AAAATCCATGTAAACTATTT+AGG 0.179636 2_1:+75256221 None:intergenic
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2_1:-75261473 Msa0225190:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2_1:+75257230 None:intergenic
CTCACCAGCCACCGGTTAAC+TGG 0.189391 2_1:-75259076 Msa0225190:CDS
GCACAAGAGGGTGGAATATT+TGG 0.198256 2_1:+75257175 None:intergenic
ACGAATCTTCTGTGCAATTC+TGG 0.206442 2_1:+75259760 None:intergenic
GAAATATACGTATAAATTAT+TGG 0.210681 2_1:+75256616 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2_1:-75261238 Msa0225190:CDS
ATATGAAAATTCGTCGAATT+AGG 0.217599 2_1:+75257105 None:intergenic
GGAGATGATAATATGCTTAA+TGG 0.230451 2_1:-75256157 Msa0225190:three_prime_UTR
TCCTTAATGGACTTTGAAAA+TGG 0.246047 2_1:+75261914 None:intergenic
TGCCCCAGTTAACTTGTTCT+TGG 0.248820 2_1:+75256051 None:intergenic
TCCCTTGCCGCTTCCTAAAA+AGG 0.249720 2_1:-75261945 Msa0225190:five_prime_UTR
CATCTCATCATGCTCTTTCA+TGG 0.252993 2_1:-75256296 Msa0225190:three_prime_UTR
TATCATCTCCATATTGTAAA+TGG 0.255911 2_1:+75256170 None:intergenic
GAAGCAAAGTTTGGAGAATA+TGG 0.266653 2_1:-75256134 Msa0225190:three_prime_UTR
TTCTCCAAGAACAAGTTAAC+TGG 0.276501 2_1:-75256055 Msa0225190:three_prime_UTR
GGAACTAGTGCTCTCCTTAA+TGG 0.279221 2_1:+75261901 None:intergenic
AATCATTGATCCAACAAGTA+TGG 0.281942 2_1:-75256529 Msa0225190:three_prime_UTR
GCTAGCATGATAATCCTATT+TGG 0.284706 2_1:+75261580 None:intergenic
CGACAACACCGGGATCTAAT+TGG 0.291081 2_1:+75257829 None:intergenic
GTAAGTATAGATCTTGGATT+TGG 0.291895 2_1:-75256419 Msa0225190:three_prime_UTR
AATCAAGAAACTAGCCAAAT+AGG 0.299124 2_1:-75261594 Msa0225190:five_prime_UTR
AGGTTTGAAGAAAATTTAAT+AGG 0.299976 2_1:+75256744 None:intergenic
GTGATATATGTGGGATTATA+AGG 0.300327 2_1:-75256942 Msa0225190:three_prime_UTR
TCTTGGAGAAATTAACTCTT+AGG 0.300580 2_1:+75256068 None:intergenic
TATGAAAATTCGTCGAATTA+GGG 0.311470 2_1:+75257106 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2_1:+75258145 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2_1:-75259217 Msa0225190:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2_1:+75259153 None:intergenic
CCAAGAGGCAATGGTAAATA+TGG 0.325980 2_1:+75257253 None:intergenic
ATGATCGTCCATTTACAATA+TGG 0.340234 2_1:-75256178 Msa0225190:three_prime_UTR
AGAATAGTATATAATATATT+AGG 0.340543 2_1:+75262116 None:intergenic
ATCTTGTAATGATGGGAATA+TGG 0.342028 2_1:-75261296 Msa0225190:CDS
GCTTAATGGGAAGCAAAGTT+TGG 0.344249 2_1:-75256143 Msa0225190:three_prime_UTR
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2_1:-75257877 Msa0225190:CDS
AATTCTCCTCCATTTCTGTT+TGG 0.351278 2_1:+75261524 None:intergenic
AAATATACGTATAAATTATT+GGG 0.361138 2_1:+75256617 None:intergenic
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2_1:+75261154 None:intergenic
CGCGCAGGTGCCCAGTTAAC+CGG 0.365809 2_1:+75259065 None:intergenic
CGAATCTTCTGTGCAATTCT+GGG 0.366108 2_1:+75259761 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2_1:-75257876 Msa0225190:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2_1:-75257894 Msa0225190:intron
TCGTTAACCAACATACTAAC+TGG 0.374033 2_1:+75256368 None:intergenic
ATGAAATTTGAAAGGTGTAA+TGG 0.375705 2_1:+75262233 None:intergenic
GGAAGCGGCAAGGGAGTGTT+TGG 0.376181 2_1:+75261953 None:intergenic
TAGTGTTTCGAGCTCACTTT+AGG 0.380357 2_1:-75256091 Msa0225190:three_prime_UTR
GATTATACGATGAAGATGTT+AGG 0.380517 2_1:-75256450 Msa0225190:three_prime_UTR
GGCTGGTGAGGCGAATATTT+AGG 0.392643 2_1:+75259089 None:intergenic
TGGTTGAGTAGCTTTATATA+AGG 0.396238 2_1:-75256257 Msa0225190:three_prime_UTR
AATAGCAAATCTTGTAATGA+TGG 0.402167 2_1:-75261304 Msa0225190:CDS
CCACCCTCTTGTGCTTGAAC+AGG 0.402182 2_1:-75257166 Msa0225190:exon
GAGATGATAATATGCTTAAT+GGG 0.408831 2_1:-75256156 Msa0225190:three_prime_UTR
TTGATGAAAGCCGATTGATT+TGG 0.413035 2_1:+75256592 None:intergenic
AAAAGTAGAGAAGTAGCTAT+TGG 0.415038 2_1:-75256571 Msa0225190:three_prime_UTR
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2_1:+75257858 None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG 0.417257 2_1:+75259050 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2_1:+75261160 None:intergenic
ATTGTAAATGGACGATCATC+AGG 0.421349 2_1:+75256182 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2_1:+75259700 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2_1:+75257849 None:intergenic
CCAGCACTTGAAGGTGTAAT+GGG 0.424238 2_1:-75257220 Msa0225190:CDS
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2_1:-75259245 Msa0225190:CDS
TGTTGGTCTACTAGACAGTA+TGG 0.428272 2_1:+75257012 None:intergenic
TCACTCACTCCCATACTTGT+TGG 0.433907 2_1:+75256519 None:intergenic
TTGACGGTAAGTATAGATCT+TGG 0.436780 2_1:-75256425 Msa0225190:three_prime_UTR
CCAGAAATAATCAATAGATT+CGG 0.440615 2_1:+75256697 None:intergenic
AGATGAAAGCCAAACAGAAA+TGG 0.440770 2_1:-75261533 Msa0225190:CDS
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2_1:+75257804 None:intergenic
CCATATTTACCATTGCCTCT+TGG 0.445286 2_1:-75257253 Msa0225190:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2_1:-75259263 Msa0225190:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2_1:-75259216 Msa0225190:CDS
TAAGTATAGATCTTGGATTT+GGG 0.447023 2_1:-75256418 Msa0225190:three_prime_UTR
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2_1:+75261166 None:intergenic
TCCAGCACTTGAAGGTGTAA+TGG 0.450202 2_1:-75257221 Msa0225190:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2_1:+75259656 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2_1:-75259728 Msa0225190:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2_1:-75259251 Msa0225190:CDS
ATCTAATTGGTACATGGCAT+GGG 0.454562 2_1:+75257842 None:intergenic
CCTCAGCAGCAGTGAGGAAT+CGG 0.456562 2_1:-75261347 Msa0225190:CDS
TAACGATAACTTTACAATGA+AGG 0.461442 2_1:-75256351 Msa0225190:three_prime_UTR
GAATCGGATATAAATTCATT+AGG 0.466131 2_1:-75261331 Msa0225190:CDS
CCCATTACACCTTCAAGTGC+TGG 0.466502 2_1:+75257220 None:intergenic
AGAATTCAGCAAGCATTTCT+GGG 0.469918 2_1:+75261371 None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2_1:-75257229 Msa0225190:CDS
GTATATTTCTCCAAATCAAT+CGG 0.472960 2_1:-75256602 Msa0225190:three_prime_UTR
AAGAAAACTAAACCTTAATT+GGG 0.474016 2_1:-75261867 Msa0225190:five_prime_UTR
CAACGACGGAGATGTGTTAC+CGG 0.474780 2_1:-75261407 Msa0225190:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2_1:+75258112 None:intergenic
CTCATTAATATCATCTTCCT+CGG 0.482000 2_1:+75256901 None:intergenic
ATGAAGGTAAATATTCAAAG+AGG 0.484530 2_1:-75256335 Msa0225190:three_prime_UTR
AAGCAAAGTTTGGAGAATAT+GGG 0.486078 2_1:-75256133 Msa0225190:three_prime_UTR
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2_1:-75259277 Msa0225190:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2_1:+75257792 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2_1:+75257867 None:intergenic
GTTGTGTAAATTAGGTGGAT+TGG 0.489509 2_1:-75259786 Msa0225190:intron
CGCTTCGTATTGGCATCAAC+GGG 0.494965 2_1:-75259024 Msa0225190:intron
ATTCAAAGAGGGCTCAAGTA+AGG 0.499377 2_1:-75256323 Msa0225190:three_prime_UTR
TAACATAATGTGATATATGT+GGG 0.500184 2_1:-75256951 Msa0225190:three_prime_UTR
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2_1:+75259665 None:intergenic
TGCATAAACGACTGATCCAC+GGG 0.503874 2_1:+75259119 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2_1:+75261550 None:intergenic
CAATCAAAGAATAATCCTCA+TGG 0.504719 2_1:-75261118 Msa0225190:CDS
AATATATACTTGAAGGTGGC+TGG 0.504816 2_1:+75259645 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2_1:-75259286 Msa0225190:CDS
GTGCCCAGTTAACCGGTGGC+TGG 0.505514 2_1:+75259072 None:intergenic
CATTGGGTTGCACCAACCAT+GGG 0.506502 2_1:-75259200 Msa0225190:CDS
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2_1:+75259173 None:intergenic
CCCGGTGTTGTCGTCCCCGC+CGG 0.509158 2_1:-75257819 Msa0225190:CDS
TAACTGGGCACCTGCGCGGC+CGG 0.510886 2_1:-75259060 Msa0225190:CDS
CCGGCGGGGACGACAACACC+GGG 0.512001 2_1:+75257819 None:intergenic
ATTGATTAATGAAATTTGAA+AGG 0.512527 2_1:+75262225 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2_1:+75257786 None:intergenic
CGATTCCTCACTGCTGCTGA+GGG 0.515102 2_1:+75261348 None:intergenic
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2_1:-75261157 Msa0225190:CDS
TGATGCCAATACGAAGCGTT+AGG 0.516711 2_1:+75259029 None:intergenic
TTTGGAAGAAGAAACTAGCT+TGG 0.516864 2_1:+75261971 None:intergenic
CTCTCCTGTTCAAGCACAAG+AGG 0.517323 2_1:+75257162 None:intergenic
CAGTTAACCGGTGGCTGGTG+AGG 0.517913 2_1:+75259077 None:intergenic
TGGATATCCAGTTAGTATGT+TGG 0.519257 2_1:-75256375 Msa0225190:three_prime_UTR
TTAACATAATGTGATATATG+TGG 0.520140 2_1:-75256952 Msa0225190:three_prime_UTR
CACCTCCTAACGCTTCGTAT+TGG 0.524846 2_1:-75259034 Msa0225190:CDS
ATCATTGATCCAACAAGTAT+GGG 0.526231 2_1:-75256528 Msa0225190:three_prime_UTR
GACTTTGCTGATCTTTCTGA+AGG 0.529725 2_1:-75261484 Msa0225190:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2_1:-75261224 Msa0225190:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2_1:+75257800 None:intergenic
TCTGGGTCCATCTCAAGATC+CGG 0.530875 2_1:+75261388 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2_1:-75259201 Msa0225190:CDS
TCACCAGCCACCGGTTAACT+GGG 0.535693 2_1:-75259075 Msa0225190:CDS
GATCTAATTGGTACATGGCA+TGG 0.535864 2_1:+75257841 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2_1:-75259242 Msa0225190:CDS
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2_1:-75261303 Msa0225190:CDS
TTACATGCTAGCTAGTAGCT+AGG 0.540287 2_1:+75261819 None:intergenic
TATATAATATATTAGGCTTG+TGG 0.543869 2_1:+75262123 None:intergenic
GAAGCGTTAGGAGGTGGAGC+CGG 0.546304 2_1:+75259041 None:intergenic
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2_1:-75261421 Msa0225190:CDS
GAGAACCTAAATAGTTTACA+TGG 0.549056 2_1:-75256226 Msa0225190:three_prime_UTR
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2_1:+75259660 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2_1:+75259188 None:intergenic
ACCGGCGGGGACGACAACAC+CGG 0.556465 2_1:+75257818 None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2_1:+75259161 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2_1:+75259170 None:intergenic
TACATGCTAGCTAGTAGCTA+GGG 0.561312 2_1:+75261820 None:intergenic
GCTTTAAGGCCAAGAGGCAA+TGG 0.562818 2_1:+75257244 None:intergenic
CAATACGAAGCGTTAGGAGG+TGG 0.565122 2_1:+75259035 None:intergenic
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2_1:+75259659 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2_1:+75257803 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2_1:+75259174 None:intergenic
TCTCCAAGAACAAGTTAACT+GGG 0.570958 2_1:-75256054 Msa0225190:three_prime_UTR
GCTCCAAATGCACCAACTGC+AGG 0.571552 2_1:-75258148 Msa0225190:CDS
AGTAGCTTTATATAAGGCAA+AGG 0.573328 2_1:-75256251 Msa0225190:three_prime_UTR
TTTAGACCTTTACATGTATG+GGG 0.574340 2_1:-75259149 Msa0225190:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2_1:+75258136 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2_1:+75259118 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2_1:+75257863 None:intergenic
AATCAAAGAATAATCCTCAT+GGG 0.581361 2_1:-75261117 Msa0225190:CDS
CCGATTCCTCACTGCTGCTG+AGG 0.581588 2_1:+75261347 None:intergenic
ACGCTTCGTATTGGCATCAA+CGG 0.582704 2_1:-75259025 Msa0225190:CDS
ACCGGGATCTAATTGGTACA+TGG 0.582780 2_1:+75257836 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2_1:-75257837 Msa0225190:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2_1:+75259169 None:intergenic
CATGAAAGAGCATGATGAGA+TGG 0.586637 2_1:+75256297 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2_1:-75261166 Msa0225190:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2_1:-75259112 Msa0225190:CDS
CTCTTGTGCTTGAACAGGAG+AGG 0.587776 2_1:-75257161 Msa0225190:exon
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2_1:-75261483 Msa0225190:CDS
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2_1:+75258121 None:intergenic
TGAAGGTAAATATTCAAAGA+GGG 0.594817 2_1:-75256334 Msa0225190:three_prime_UTR
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2_1:-75261395 Msa0225190:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2_1:-75259734 Msa0225190:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2_1:+75259164 None:intergenic
TAATATATTAGGCTTGTGGA+TGG 0.598491 2_1:+75262127 None:intergenic
CCTGTTCAAGCACAAGAGGG+TGG 0.600264 2_1:+75257166 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2_1:+75258106 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2_1:-75257781 Msa0225190:intron
AATTGGTACATGGCATGGGG+TGG 0.606215 2_1:+75257846 None:intergenic
TGAAAGCCAAACAGAAATGG+AGG 0.606596 2_1:-75261530 Msa0225190:CDS
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2_1:-75261170 Msa0225190:CDS
TAACTGGGGCATGTACATGT+TGG 0.614526 2_1:-75256039 None:intergenic
TGCCAATACGAAGCGTTAGG+AGG 0.617509 2_1:+75259032 None:intergenic
GAATCTTCTGTGCAATTCTG+GGG 0.619894 2_1:+75259762 None:intergenic
AGCAAAGTTTGGAGAATATG+GGG 0.621203 2_1:-75256132 Msa0225190:three_prime_UTR
ATATTCGCCTCACCAGCCAC+CGG 0.625033 2_1:-75259084 Msa0225190:CDS
TCTCCTGTTCAAGCACAAGA+GGG 0.631508 2_1:+75257163 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2_1:-75259274 Msa0225190:CDS
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2_1:-75261101 Msa0225190:intron
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2_1:+75259184 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2_1:-75257202 Msa0225190:CDS
TGCTAGCTAGTAGCTAGGGT+AGG 0.645094 2_1:+75261824 None:intergenic
TCTAATTGGTACATGGCATG+GGG 0.646732 2_1:+75257843 None:intergenic
GCAGGTGCCCAGTTAACCGG+TGG 0.647763 2_1:+75259068 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2_1:-75259148 Msa0225190:CDS
CGGTTAACTGGGCACCTGCG+CGG 0.649138 2_1:-75259064 Msa0225190:CDS
TTAATGAGACAAATAATGTG+AGG 0.659401 2_1:-75256886 Msa0225190:three_prime_UTR
AATGAATATATACTTGAAGG+TGG 0.660387 2_1:+75259641 None:intergenic
TAAACGACTGATCCACGGGA+TGG 0.666201 2_1:+75259123 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2_1:-75259325 Msa0225190:intron
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2_1:+75257780 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2_1:-75259739 Msa0225190:CDS
CTCCAAGAACAAGTTAACTG+GGG 0.686040 2_1:-75256053 Msa0225190:three_prime_UTR
AGGCAATGGATTCGGCACAA+CGG 0.686412 2_1:+75261174 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2_1:+75257238 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2_1:+75257805 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2_1:-75258113 Msa0225190:intron
ATTCTCCCTCAGCAGCAGTG+AGG 0.714171 2_1:-75261353 Msa0225190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAGTATATAATATATT+AGG + chr2_1:75256177-75256196 None:intergenic 10.0%
!!! ATAATATTATAATTTTTGGA+AGG + chr2_1:75256212-75256231 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG - chr2_1:75257224-75257243 Msa0225190:CDS 10.0%
!! TGAAAAGAAAAAAAAATTAA+GGG + chr2_1:75257275-75257294 None:intergenic 10.0%
!! TTGAAAAGAAAAAAAAATTA+AGG + chr2_1:75257276-75257295 None:intergenic 10.0%
!!! CTTTTAAAAAAATAGATTTT+AGG - chr2_1:75257515-75257534 Msa0225190:intron 10.0%
!! AAATATACGTATAAATTATT+GGG + chr2_1:75261676-75261695 None:intergenic 10.0%
!! ATTGATTAATGAAATTTGAA+AGG + chr2_1:75256068-75256087 None:intergenic 15.0%
!! ATAGTTAGAATTATATTGTA+AGG - chr2_1:75256631-75256650 Msa0225190:three_prime_UTR 15.0%
!! TATAATAAACAATCAACAAA+GGG + chr2_1:75257303-75257322 None:intergenic 15.0%
!! TTATAATAAACAATCAACAA+AGG + chr2_1:75257304-75257323 None:intergenic 15.0%
!! TAATTAGTTAGATATGTAAT+AGG + chr2_1:75258374-75258393 None:intergenic 15.0%
!!! TCAATATATCATCAAAATTT+TGG + chr2_1:75259353-75259372 None:intergenic 15.0%
!!! CAAATAAAATGACTTTTATA+TGG + chr2_1:75259560-75259579 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG + chr2_1:75260096-75260115 None:intergenic 15.0%
!! TTAGACAAATAAAATGAAAT+AGG + chr2_1:75260097-75260116 None:intergenic 15.0%
!! TTAACTTATTCATATTATTG+AGG - chr2_1:75260358-75260377 Msa0225190:intron 15.0%
!! TAAAAGAAAAGAAAAATTAC+CGG + chr2_1:75260531-75260550 None:intergenic 15.0%
!!! CTATTTTCAAATAATGTTTT+AGG - chr2_1:75260672-75260691 Msa0225190:intron 15.0%
!!! GAATGACAATTTTTTTATTA+TGG - chr2_1:75260699-75260718 Msa0225190:intron 15.0%
!! GAAATATACGTATAAATTAT+TGG + chr2_1:75261677-75261696 None:intergenic 15.0%
!! TATATAATATATTAGGCTTG+TGG + chr2_1:75256170-75256189 None:intergenic 20.0%
!! AAGAAAACTAAACCTTAATT+GGG - chr2_1:75256423-75256442 Msa0225190:three_prime_UTR 20.0%
!!! GTAAGTACTCTTTTATTATA+TGG - chr2_1:75256490-75256509 Msa0225190:three_prime_UTR 20.0%
!! TTCATATTACCTAAATCATA+AGG + chr2_1:75257425-75257444 None:intergenic 20.0%
!!! TATTTTTTTCAACAACAAGA+AGG + chr2_1:75257665-75257684 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr2_1:75257770-75257789 None:intergenic 20.0%
!! CAAACACTTAAAAATGAAAA+AGG - chr2_1:75257773-75257792 Msa0225190:intron 20.0%
!!! TGAAAAAGGTGATTTTTTTA+AGG - chr2_1:75257787-75257806 Msa0225190:CDS 20.0%
!!! GAAAAAGGTGATTTTTTTAA+GGG - chr2_1:75257788-75257807 Msa0225190:CDS 20.0%
!! GAAAAAAAAGCTTAAACAAA+CGG - chr2_1:75257828-75257847 Msa0225190:CDS 20.0%
!!! AGATCTAAGAATTATTTCTT+AGG - chr2_1:75258173-75258192 Msa0225190:intron 20.0%
!! CACTTTATTATTAAATTTGC+CGG - chr2_1:75258428-75258447 Msa0225190:intron 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG + chr2_1:75258593-75258612 None:intergenic 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG - chr2_1:75258592-75258611 Msa0225190:intron 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG - chr2_1:75258593-75258612 Msa0225190:intron 20.0%
!! GAAAATGAATATATACTTGA+AGG + chr2_1:75258655-75258674 None:intergenic 20.0%
!!! ACTTTTTTTTCAGTATATTG+AGG + chr2_1:75258698-75258717 None:intergenic 20.0%
!! ATCTACGTAAATTAAATTGT+TGG - chr2_1:75258822-75258841 Msa0225190:intron 20.0%
!! TTTACTATCCAATTAACTTA+GGG + chr2_1:75259593-75259612 None:intergenic 20.0%
!! ATAAAATGAAATAGGGAATT+AGG + chr2_1:75260089-75260108 None:intergenic 20.0%
!! ACGAAAAACAACAAAATAAA+AGG + chr2_1:75260853-75260872 None:intergenic 20.0%
!!! ATTTTTGTTTTAACAGTCAA+AGG - chr2_1:75260976-75260995 Msa0225190:intron 20.0%
!! TTAACATAATGTGATATATG+TGG - chr2_1:75261338-75261357 Msa0225190:CDS 20.0%
!! TAACATAATGTGATATATGT+GGG - chr2_1:75261339-75261358 Msa0225190:CDS 20.0%
!! AGGTTTGAAGAAAATTTAAT+AGG + chr2_1:75261549-75261568 None:intergenic 20.0%
!!! TATACTTCCAAGAAAATTTT+AGG + chr2_1:75261569-75261588 None:intergenic 20.0%
!! AAAATCCATGTAAACTATTT+AGG + chr2_1:75262072-75262091 None:intergenic 20.0%
!! ATGAAATTTGAAAGGTGTAA+TGG + chr2_1:75256060-75256079 None:intergenic 25.0%
! CAAACAAAAATCATAAGTTG+TGG - chr2_1:75256285-75256304 Msa0225190:three_prime_UTR 25.0%
! CAAGAAAACTAAACCTTAAT+TGG - chr2_1:75256422-75256441 Msa0225190:three_prime_UTR 25.0%
!!! TTTTTTGTGTTTATAGTGTG+TGG - chr2_1:75256668-75256687 Msa0225190:three_prime_UTR 25.0%
! GAATCGGATATAAATTCATT+AGG - chr2_1:75256959-75256978 Msa0225190:three_prime_UTR 25.0%
! AATAGCAAATCTTGTAATGA+TGG - chr2_1:75256986-75257005 Msa0225190:three_prime_UTR 25.0%
! ATAGCAAATCTTGTAATGAT+GGG - chr2_1:75256987-75257006 Msa0225190:three_prime_UTR 25.0%
! AATCAAAGAATAATCCTCAT+GGG - chr2_1:75257173-75257192 Msa0225190:CDS 25.0%
! AAGAAATTGAACTTCTTAAC+CGG - chr2_1:75257322-75257341 Msa0225190:intron 25.0%
! TGTCGCTATCTTTATATTTA+GGG - chr2_1:75257478-75257497 Msa0225190:intron 25.0%
!! AATAGATTTTTATGGGTAGT+AGG + chr2_1:75257604-75257623 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr2_1:75257703-75257722 Msa0225190:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG + chr2_1:75257707-75257726 None:intergenic 25.0%
! TCAAAAACTTGATAAGACTA+AGG + chr2_1:75257856-75257875 None:intergenic 25.0%
! CAAAAATAGTTATTCCAACA+AGG + chr2_1:75257932-75257951 None:intergenic 25.0%
!! CTTGTTGGAATAACTATTTT+TGG - chr2_1:75257930-75257949 Msa0225190:intron 25.0%
!! TTTTTGAATGGTGAATCTAA+GGG + chr2_1:75258258-75258277 None:intergenic 25.0%
!!! TTTTTTGAATGGTGAATCTA+AGG + chr2_1:75258259-75258278 None:intergenic 25.0%
!!! CTTGATCACTATTTTTTGAA+TGG + chr2_1:75258270-75258289 None:intergenic 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG + chr2_1:75258334-75258353 None:intergenic 25.0%
! CATACTATAAAGTACAAATC+CGG + chr2_1:75258450-75258469 None:intergenic 25.0%
!!! ATGTGTTTATGTTTGTTGTT+GGG - chr2_1:75258482-75258501 Msa0225190:intron 25.0%
! AATGAATATATACTTGAAGG+TGG + chr2_1:75258652-75258671 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG - chr2_1:75258792-75258811 Msa0225190:intron 25.0%
! CGTAAATTTAAGCATCTAAT+GGG - chr2_1:75258793-75258812 Msa0225190:intron 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG - chr2_1:75258897-75258916 Msa0225190:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG - chr2_1:75258898-75258917 Msa0225190:intron 25.0%
! AAAGAGATATTGTGAATCAT+TGG - chr2_1:75259073-75259092 Msa0225190:CDS 25.0%
! AAGAGATATTGTGAATCATT+GGG - chr2_1:75259074-75259093 Msa0225190:CDS 25.0%
! ATACATGTAAAGGTCTAAAA+TGG + chr2_1:75259140-75259159 None:intergenic 25.0%
!! ATTTTAGACCTTTACATGTA+TGG - chr2_1:75259139-75259158 Msa0225190:CDS 25.0%
!! TTTTAGACCTTTACATGTAT+GGG - chr2_1:75259140-75259159 Msa0225190:CDS 25.0%
!! CAAAATTTTGGATCTCTTTT+GGG + chr2_1:75259341-75259360 None:intergenic 25.0%
!! TCAAAATTTTGGATCTCTTT+TGG + chr2_1:75259342-75259361 None:intergenic 25.0%
! TTATATGGAAAATACTTGTG+TGG + chr2_1:75259545-75259564 None:intergenic 25.0%
! GTTTACTATCCAATTAACTT+AGG + chr2_1:75259594-75259613 None:intergenic 25.0%
! TTGGATAGTAAACAAAAACT+TGG - chr2_1:75259601-75259620 Msa0225190:intron 25.0%
!!! ACAAAAACTTGGTTTTTCTT+TGG - chr2_1:75259612-75259631 Msa0225190:intron 25.0%
! AGTTAGGTCATACTTAATAA+CGG - chr2_1:75259652-75259671 Msa0225190:intron 25.0%
! ACAATGAAGAGATTTAAATG+TGG + chr2_1:75259742-75259761 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG + chr2_1:75259909-75259928 None:intergenic 25.0%
! TGATCAAAATATAGCAGTTT+AGG - chr2_1:75259922-75259941 Msa0225190:intron 25.0%
! GATCAAAATATAGCAGTTTA+GGG - chr2_1:75259923-75259942 Msa0225190:intron 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG - chr2_1:75260120-75260139 Msa0225190:intron 25.0%
! TTCACATAAGAATCCAAATT+TGG + chr2_1:75260251-75260270 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG - chr2_1:75260396-75260415 Msa0225190:intron 25.0%
!! CTTCTTATAATTGCTTTGAA+GGG - chr2_1:75260618-75260637 Msa0225190:intron 25.0%
! AAAGGTTGTATTTATAGACA+CGG + chr2_1:75260835-75260854 None:intergenic 25.0%
! TATGAAAATTCGTCGAATTA+GGG + chr2_1:75261187-75261206 None:intergenic 25.0%
! ATATGAAAATTCGTCGAATT+AGG + chr2_1:75261188-75261207 None:intergenic 25.0%
! TTAATGAGACAAATAATGTG+AGG - chr2_1:75261404-75261423 Msa0225190:CDS 25.0%
!! CTTCAAACCTAAAATTTTCT+TGG - chr2_1:75261559-75261578 Msa0225190:CDS 25.0%
! CCAGAAATAATCAATAGATT+CGG + chr2_1:75261596-75261615 None:intergenic 25.0%
! GTATATTTCTCCAAATCAAT+CGG - chr2_1:75261688-75261707 Msa0225190:intron 25.0%
!! CTTCAAAAAGTTTACGATTT+TGG - chr2_1:75261811-75261830 Msa0225190:intron 25.0%
! TAAGTATAGATCTTGGATTT+GGG - chr2_1:75261872-75261891 Msa0225190:five_prime_UTR 25.0%
! TAACGATAACTTTACAATGA+AGG - chr2_1:75261939-75261958 Msa0225190:five_prime_UTR 25.0%
! ATGAAGGTAAATATTCAAAG+AGG - chr2_1:75261955-75261974 Msa0225190:five_prime_UTR 25.0%
! TGAAGGTAAATATTCAAAGA+GGG - chr2_1:75261956-75261975 Msa0225190:five_prime_UTR 25.0%
! TATCATCTCCATATTGTAAA+TGG + chr2_1:75262123-75262142 None:intergenic 25.0%
! GAGATGATAATATGCTTAAT+GGG - chr2_1:75262134-75262153 Msa0225190:five_prime_UTR 25.0%
TAATATATTAGGCTTGTGGA+TGG + chr2_1:75256166-75256185 None:intergenic 30.0%
!! AATGGTAATGTTGCCTTTTT+AGG + chr2_1:75256361-75256380 None:intergenic 30.0%
! ACCATTTTCAAAGTCCATTA+AGG - chr2_1:75256375-75256394 Msa0225190:three_prime_UTR 30.0%
!! TCCTTAATGGACTTTGAAAA+TGG + chr2_1:75256379-75256398 None:intergenic 30.0%
! TAGTTTTCTTGTGAAAGAGA+TGG + chr2_1:75256413-75256432 None:intergenic 30.0%
!!! TGATTTTTTGCACCCAATTA+AGG + chr2_1:75256438-75256457 None:intergenic 30.0%
AATCAAGAAACTAGCCAAAT+AGG - chr2_1:75256696-75256715 Msa0225190:three_prime_UTR 30.0%
! ATCTTGTAATGATGGGAATA+TGG - chr2_1:75256994-75257013 Msa0225190:three_prime_UTR 30.0%
CAATCAAAGAATAATCCTCA+TGG - chr2_1:75257172-75257191 Msa0225190:CDS 30.0%
ATGGCAATACCTTATGATTT+AGG - chr2_1:75257413-75257432 Msa0225190:intron 30.0%
CTGTCGCTATCTTTATATTT+AGG - chr2_1:75257477-75257496 Msa0225190:intron 30.0%
TTTGAATGCAAAAGAACTCA+CGG - chr2_1:75257871-75257890 Msa0225190:CDS 30.0%
GATATATCTCATAACCTTGT+TGG - chr2_1:75257915-75257934 Msa0225190:intron 30.0%
!! CGTCTAACTTTGAAATTGAT+TGG - chr2_1:75258115-75258134 Msa0225190:CDS 30.0%
TTGTTTGTTCCATGCATAAT+AGG - chr2_1:75258223-75258242 Msa0225190:intron 30.0%
! TTTTGAATGGTGAATCTAAG+GGG + chr2_1:75258257-75258276 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG - chr2_1:75258323-75258342 Msa0225190:intron 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG + chr2_1:75258328-75258347 None:intergenic 30.0%
! GTGTGAATATATTTTGTGCT+GGG + chr2_1:75258401-75258420 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG + chr2_1:75258402-75258421 None:intergenic 30.0%
!! GATGTGTTTATGTTTGTTGT+TGG - chr2_1:75258481-75258500 Msa0225190:intron 30.0%
! TGAGGTTTGAAATTAAAGAG+AGG + chr2_1:75258680-75258699 None:intergenic 30.0%
! CAATTGTTTGGAACAAATAG+AGG - chr2_1:75259039-75259058 Msa0225190:CDS 30.0%
TTTAGACCTTTACATGTATG+GGG - chr2_1:75259141-75259160 Msa0225190:CDS 30.0%
TAAAAGGAGAAAGACTTATG+TGG - chr2_1:75259392-75259411 Msa0225190:intron 30.0%
CTCGAGACATAAAATTAGTT+AGG - chr2_1:75259636-75259655 Msa0225190:intron 30.0%
GATTATGTTACAAACTTGCA+AGG - chr2_1:75259809-75259828 Msa0225190:intron 30.0%
! AGAATATGAATCCAAGCTTT+TGG + chr2_1:75259882-75259901 None:intergenic 30.0%
TTGTCTTCTACTTCCAAATT+TGG - chr2_1:75260235-75260254 Msa0225190:intron 30.0%
AGAAAAGAAAAATTACCGGA+TGG + chr2_1:75260527-75260546 None:intergenic 30.0%
GCTTCTTATAATTGCTTTGA+AGG - chr2_1:75260617-75260636 Msa0225190:intron 30.0%
! TCGAGTTAAACTTTTCATGT+TGG + chr2_1:75261298-75261317 None:intergenic 30.0%
GTGATATATGTGGGATTATA+AGG - chr2_1:75261348-75261367 Msa0225190:CDS 30.0%
! TAAGGCTGTGATTTTTGTAT+TGG - chr2_1:75261366-75261385 Msa0225190:CDS 30.0%
CTCATTAATATCATCTTCCT+CGG + chr2_1:75261392-75261411 None:intergenic 30.0%
! CCGAATCTATTGATTATTTC+TGG - chr2_1:75261593-75261612 Msa0225190:five_prime_UTR 30.0%
AAAAGTAGAGAAGTAGCTAT+TGG - chr2_1:75261719-75261738 Msa0225190:intron 30.0%
AATCATTGATCCAACAAGTA+TGG - chr2_1:75261761-75261780 Msa0225190:intron 30.0%
ATCATTGATCCAACAAGTAT+GGG - chr2_1:75261762-75261781 Msa0225190:intron 30.0%
GATTATACGATGAAGATGTT+AGG - chr2_1:75261840-75261859 Msa0225190:five_prime_UTR 30.0%
!! ATGAAGATGTTAGGTTTTGA+CGG - chr2_1:75261849-75261868 Msa0225190:five_prime_UTR 30.0%
GTAAGTATAGATCTTGGATT+TGG - chr2_1:75261871-75261890 Msa0225190:five_prime_UTR 30.0%
!! TTTCATGGTTTTACTACTGA+TGG - chr2_1:75262009-75262028 Msa0225190:five_prime_UTR 30.0%
!! TGGTTGAGTAGCTTTATATA+AGG - chr2_1:75262033-75262052 Msa0225190:five_prime_UTR 30.0%
!! AGTAGCTTTATATAAGGCAA+AGG - chr2_1:75262039-75262058 Msa0225190:five_prime_UTR 30.0%
GAGAACCTAAATAGTTTACA+TGG - chr2_1:75262064-75262083 Msa0225190:five_prime_UTR 30.0%
! TAGTTTACATGGATTTTCGT+TGG - chr2_1:75262075-75262094 Msa0225190:five_prime_UTR 30.0%
! AGTTTACATGGATTTTCGTT+GGG - chr2_1:75262076-75262095 Msa0225190:five_prime_UTR 30.0%
ATGATCGTCCATTTACAATA+TGG - chr2_1:75262112-75262131 Msa0225190:five_prime_UTR 30.0%
GGAGATGATAATATGCTTAA+TGG - chr2_1:75262133-75262152 Msa0225190:five_prime_UTR 30.0%
AAGCAAAGTTTGGAGAATAT+GGG - chr2_1:75262157-75262176 Msa0225190:five_prime_UTR 30.0%
TCTTGGAGAAATTAACTCTT+AGG + chr2_1:75262225-75262244 None:intergenic 30.0%
TTTGGAAGAAGAAACTAGCT+TGG + chr2_1:75256322-75256341 None:intergenic 35.0%
!! AATGTTGCCTTTTTAGGAAG+CGG + chr2_1:75256355-75256374 None:intergenic 35.0%
GCTAGCATGATAATCCTATT+TGG + chr2_1:75256713-75256732 None:intergenic 35.0%
TCATCTCTTATGCTACTCAA+TGG + chr2_1:75256743-75256762 None:intergenic 35.0%
AGATGAAAGCCAAACAGAAA+TGG - chr2_1:75256757-75256776 Msa0225190:three_prime_UTR 35.0%
AATTCTCCTCCATTTCTGTT+TGG + chr2_1:75256769-75256788 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG - chr2_1:75256807-75256826 Msa0225190:three_prime_UTR 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG - chr2_1:75256817-75256836 Msa0225190:three_prime_UTR 35.0%
AGAATTCAGCAAGCATTTCT+GGG + chr2_1:75256922-75256941 None:intergenic 35.0%
GTAGTTTCTTCTTCAGATTC+TGG - chr2_1:75257052-75257071 Msa0225190:three_prime_UTR 35.0%
! TGTGTAAGTGTTGTAAACTC+CGG + chr2_1:75257344-75257363 None:intergenic 35.0%
TTGAATGCAAAAGAACTCAC+GGG - chr2_1:75257872-75257891 Msa0225190:CDS 35.0%
AGCCAGTCGATCTAAATTAA+CGG - chr2_1:75258086-75258105 Msa0225190:intron 35.0%
GTACTCTAACCTATTATGCA+TGG + chr2_1:75258235-75258254 None:intergenic 35.0%
! CTTGGATTTTCTACTATTGG+TGG + chr2_1:75258310-75258329 None:intergenic 35.0%
! GGACTTGGATTTTCTACTAT+TGG + chr2_1:75258313-75258332 None:intergenic 35.0%
! GTTGTTGGGTTGTGTAAATT+AGG - chr2_1:75258496-75258515 Msa0225190:intron 35.0%
GTTGTGTAAATTAGGTGGAT+TGG - chr2_1:75258504-75258523 Msa0225190:intron 35.0%
AATATATACTTGAAGGTGGC+TGG + chr2_1:75258648-75258667 None:intergenic 35.0%
TGCAGAAATATAGATCGCAT+AGG - chr2_1:75258965-75258984 Msa0225190:intron 35.0%
! TTTGGAACAAATAGAGGAGT+TGG - chr2_1:75259045-75259064 Msa0225190:CDS 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG + chr2_1:75259132-75259151 None:intergenic 35.0%
TTAGACCTTTACATGTATGG+GGG - chr2_1:75259142-75259161 Msa0225190:CDS 35.0%
ATCAGTCGTTTATGCATATG+TGG - chr2_1:75259178-75259197 Msa0225190:CDS 35.0%
TCTCTTCTCTCTCATTTCTT+TGG - chr2_1:75259487-75259506 Msa0225190:intron 35.0%
CTAGCAAACCCTAAGTTAAT+TGG - chr2_1:75259582-75259601 Msa0225190:intron 35.0%
ATGAGTCTGTACTCAAAATG+TGG - chr2_1:75259714-75259733 Msa0225190:CDS 35.0%
GAAATAGGGAATTAGGAGAT+TGG + chr2_1:75260082-75260101 None:intergenic 35.0%
ATCTAATTGGTACATGGCAT+GGG + chr2_1:75260451-75260470 None:intergenic 35.0%
AGAGACAAGCAAGAAAATGA+CGG + chr2_1:75260749-75260768 None:intergenic 35.0%
! TGAATTCATGCTGTGTGTTT+TGG + chr2_1:75260794-75260813 None:intergenic 35.0%
CAAAACGTGAAATAAACTGC+TGG + chr2_1:75260886-75260905 None:intergenic 35.0%
ATGGGTGAATTACAGAAACA+AGG - chr2_1:75261088-75261107 Msa0225190:intron 35.0%
!!! TGTTTTTGGTTCATTGCACA+AGG - chr2_1:75261153-75261172 Msa0225190:CDS 35.0%
TTGATGAAAGCCGATTGATT+TGG + chr2_1:75261701-75261720 None:intergenic 35.0%
TTGACGGTAAGTATAGATCT+TGG - chr2_1:75261865-75261884 Msa0225190:five_prime_UTR 35.0%
! CATGCACATGTTTTCTCATA+TGG - chr2_1:75261895-75261914 Msa0225190:five_prime_UTR 35.0%
TGGATATCCAGTTAGTATGT+TGG - chr2_1:75261915-75261934 Msa0225190:five_prime_UTR 35.0%
TCGTTAACCAACATACTAAC+TGG + chr2_1:75261925-75261944 None:intergenic 35.0%
!! ATGGTTTTACTACTGATGGA+TGG - chr2_1:75262013-75262032 Msa0225190:five_prime_UTR 35.0%
ATTGTAAATGGACGATCATC+AGG + chr2_1:75262111-75262130 None:intergenic 35.0%
GAAGCAAAGTTTGGAGAATA+TGG - chr2_1:75262156-75262175 Msa0225190:five_prime_UTR 35.0%
AGCAAAGTTTGGAGAATATG+GGG - chr2_1:75262158-75262177 Msa0225190:five_prime_UTR 35.0%
TTCTCCAAGAACAAGTTAAC+TGG - chr2_1:75262235-75262254 Msa0225190:five_prime_UTR 35.0%
TCTCCAAGAACAAGTTAACT+GGG - chr2_1:75262236-75262255 Msa0225190:five_prime_UTR 35.0%
TACATGCTAGCTAGTAGCTA+GGG + chr2_1:75256473-75256492 None:intergenic 40.0%
TTACATGCTAGCTAGTAGCT+AGG + chr2_1:75256474-75256493 None:intergenic 40.0%
TGAAAGCCAAACAGAAATGG+AGG - chr2_1:75256760-75256779 Msa0225190:three_prime_UTR 40.0%
GACTTTGCTGATCTTTCTGA+AGG - chr2_1:75256806-75256825 Msa0225190:three_prime_UTR 40.0%
TTCTTCGTATGCTTCAACGA+CGG - chr2_1:75256869-75256888 Msa0225190:three_prime_UTR 40.0%
GAGAATTCAGCAAGCATTTC+TGG + chr2_1:75256923-75256942 None:intergenic 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG + chr2_1:75257190-75257209 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG - chr2_1:75257189-75257208 Msa0225190:CDS 40.0%
TTTCTCCTTCTTTGAGCACA+TGG - chr2_1:75257394-75257413 Msa0225190:intron 40.0%
TATTGCCATGTGCTCAAAGA+AGG + chr2_1:75257402-75257421 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG + chr2_1:75257469-75257488 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG + chr2_1:75258091-75258110 None:intergenic 40.0%
GGAACAAACAAACACACAAG+AGG + chr2_1:75258214-75258233 None:intergenic 40.0%
! GTTGGGTTGTGTAAATTAGG+TGG - chr2_1:75258499-75258518 Msa0225190:intron 40.0%
GAATCTTCTGTGCAATTCTG+GGG + chr2_1:75258531-75258550 None:intergenic 40.0%
CGAATCTTCTGTGCAATTCT+GGG + chr2_1:75258532-75258551 None:intergenic 40.0%
ACGAATCTTCTGTGCAATTC+TGG + chr2_1:75258533-75258552 None:intergenic 40.0%
! GGCTGTACCTTCAAGAATTT+TGG - chr2_1:75258583-75258602 Msa0225190:intron 40.0%
AGTCAAAGGAGGCAATTGTT+TGG - chr2_1:75259027-75259046 Msa0225190:CDS 40.0%
ATGCATAAACGACTGATCCA+CGG + chr2_1:75259175-75259194 None:intergenic 40.0%
TGTGACCAAACCCAATTGTA+TGG + chr2_1:75259425-75259444 None:intergenic 40.0%
GAGAGAGAAGAGAGAGAAAA+TGG + chr2_1:75259480-75259499 None:intergenic 40.0%
TTTGGTTGTGACCACACAAT+GGG - chr2_1:75259505-75259524 Msa0225190:intron 40.0%
GAAAATACTTGTGTGGACCA+GGG + chr2_1:75259538-75259557 None:intergenic 40.0%
ACAGCATAGAAGTTGTAGAG+AGG - chr2_1:75259764-75259783 Msa0225190:CDS 40.0%
ACTTAGCTTCACCAAAAGCT+TGG - chr2_1:75259868-75259887 Msa0225190:intron 40.0%
ATAGTTACCGTTGTTGTCAG+AGG + chr2_1:75260187-75260206 None:intergenic 40.0%
TCTAATTGGTACATGGCATG+GGG + chr2_1:75260450-75260469 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG + chr2_1:75260452-75260471 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG + chr2_1:75260748-75260767 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG + chr2_1:75260781-75260800 None:intergenic 40.0%
CCAAGAGGCAATGGTAAATA+TGG + chr2_1:75261040-75261059 None:intergenic 40.0%
CCATATTTACCATTGCCTCT+TGG - chr2_1:75261037-75261056 Msa0225190:intron 40.0%
! TGAACAGGAGAGGATGTTTT+TGG - chr2_1:75261139-75261158 Msa0225190:CDS 40.0%
! TGTTGGTCTACTAGACAGTA+TGG + chr2_1:75261281-75261300 None:intergenic 40.0%
!! TGTGATTTTTGTATTGGCCG+AGG - chr2_1:75261372-75261391 Msa0225190:CDS 40.0%
ATTCAAAGAGGGCTCAAGTA+AGG - chr2_1:75261967-75261986 Msa0225190:five_prime_UTR 40.0%
! CATGAAAGAGCATGATGAGA+TGG + chr2_1:75261996-75262015 None:intergenic 40.0%
CATCTCATCATGCTCTTTCA+TGG - chr2_1:75261994-75262013 Msa0225190:five_prime_UTR 40.0%
GCTTAATGGGAAGCAAAGTT+TGG - chr2_1:75262147-75262166 Msa0225190:five_prime_UTR 40.0%
TAGTGTTTCGAGCTCACTTT+AGG - chr2_1:75262199-75262218 Msa0225190:five_prime_UTR 40.0%
CTCCAAGAACAAGTTAACTG+GGG - chr2_1:75262237-75262256 Msa0225190:five_prime_UTR 40.0%
GGAACTAGTGCTCTCCTTAA+TGG + chr2_1:75256392-75256411 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG - chr2_1:75256895-75256914 Msa0225190:three_prime_UTR 45.0%
! CCTTCCTTAGGCAATGGATT+CGG + chr2_1:75257127-75257146 None:intergenic 45.0%
TTCTCACCTTCCTTAGGCAA+TGG + chr2_1:75257133-75257152 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG - chr2_1:75257133-75257152 Msa0225190:three_prime_UTR 45.0%
CTTCCTTTCTCACCTTCCTT+AGG + chr2_1:75257139-75257158 None:intergenic 45.0%
GAGAAAAAACCTAGCGCAAG+TGG + chr2_1:75257380-75257399 None:intergenic 45.0%
GGAACAAATAGAGGAGTTGG+AGG - chr2_1:75259048-75259067 Msa0225190:CDS 45.0%
! AAATGGTGTACTGGTGGCAT+GGG + chr2_1:75259123-75259142 None:intergenic 45.0%
! AAAATGGTGTACTGGTGGCA+TGG + chr2_1:75259124-75259143 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG + chr2_1:75259129-75259148 None:intergenic 45.0%
TGCATAAACGACTGATCCAC+GGG + chr2_1:75259174-75259193 None:intergenic 45.0%
! TGATGCCAATACGAAGCGTT+AGG + chr2_1:75259264-75259283 None:intergenic 45.0%
! ACGCTTCGTATTGGCATCAA+CGG - chr2_1:75259265-75259284 Msa0225190:CDS 45.0%
GAGAAAGACTTATGTGGACC+AGG - chr2_1:75259398-75259417 Msa0225190:intron 45.0%
TGGACCAGGACCATACAATT+GGG - chr2_1:75259412-75259431 Msa0225190:intron 45.0%
CAAACCCAATTGTATGGTCC+TGG + chr2_1:75259419-75259438 None:intergenic 45.0%
CAGGACCATACAATTGGGTT+TGG - chr2_1:75259417-75259436 Msa0225190:intron 45.0%
CTTTGGTTGTGACCACACAA+TGG - chr2_1:75259504-75259523 Msa0225190:intron 45.0%
TTGGTTGTGACCACACAATG+GGG - chr2_1:75259506-75259525 Msa0225190:intron 45.0%
GGAAAATACTTGTGTGGACC+AGG + chr2_1:75259539-75259558 None:intergenic 45.0%
GCCATGTACCAATTAGATCC+CGG - chr2_1:75260453-75260472 Msa0225190:intron 45.0%
ACCGGGATCTAATTGGTACA+TGG + chr2_1:75260457-75260476 None:intergenic 45.0%
! CAAGCAAGAAAATGACGGGA+TGG + chr2_1:75260744-75260763 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG + chr2_1:75260778-75260797 None:intergenic 45.0%
!! CTTCAAGTGCTGGAGCTTTA+AGG + chr2_1:75261063-75261082 None:intergenic 45.0%
CTTAAAGCTCCAGCACTTGA+AGG - chr2_1:75261061-75261080 Msa0225190:intron 45.0%
! TCCAGCACTTGAAGGTGTAA+TGG - chr2_1:75261069-75261088 Msa0225190:intron 45.0%
! CCAGCACTTGAAGGTGTAAT+GGG - chr2_1:75261070-75261089 Msa0225190:intron 45.0%
GCACAAGAGGGTGGAATATT+TGG + chr2_1:75261118-75261137 None:intergenic 45.0%
TCTCCTGTTCAAGCACAAGA+GGG + chr2_1:75261130-75261149 None:intergenic 45.0%
TCACTCACTCCCATACTTGT+TGG + chr2_1:75261774-75261793 None:intergenic 45.0%
!! TGCCCCAGTTAACTTGTTCT+TGG + chr2_1:75262242-75262261 None:intergenic 45.0%
!! AAAAAAAATAAAATCAAAAT+TGG - chr2_1:75256133-75256152 Msa0225190:three_prime_UTR 5.0%
!!! CTATATAATATTATAATTTT+TGG + chr2_1:75256216-75256235 None:intergenic 5.0%
!!! TTTTTAAAATAGATTTTTAT+GGG + chr2_1:75257611-75257630 None:intergenic 5.0%
!!! TTTTTTAAAATAGATTTTTA+TGG + chr2_1:75257612-75257631 None:intergenic 5.0%
!!! TTAACATTTTTATATATAAA+AGG - chr2_1:75259376-75259395 Msa0225190:intron 5.0%
!!! AAACTATTAAATTTTATTTT+TGG - chr2_1:75260595-75260614 Msa0225190:intron 5.0%
!!! AAAAAAACTAATTTTTTTAA+TGG - chr2_1:75260643-75260662 Msa0225190:intron 5.0%
! TCCCTTGCCGCTTCCTAAAA+AGG - chr2_1:75256345-75256364 Msa0225190:three_prime_UTR 50.0%
!! GCCTTTTTAGGAAGCGGCAA+GGG + chr2_1:75256349-75256368 None:intergenic 50.0%
!! TGCCTTTTTAGGAAGCGGCA+AGG + chr2_1:75256350-75256369 None:intergenic 50.0%
TGCTAGCTAGTAGCTAGGGT+AGG + chr2_1:75256469-75256488 None:intergenic 50.0%
CAACGACGGAGATGTGTTAC+CGG - chr2_1:75256883-75256902 Msa0225190:three_prime_UTR 50.0%
TCTGGGTCCATCTCAAGATC+CGG + chr2_1:75256905-75256924 None:intergenic 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG - chr2_1:75257066-75257085 Msa0225190:three_prime_UTR 50.0%
! AGGCAATGGATTCGGCACAA+CGG + chr2_1:75257119-75257138 None:intergenic 50.0%
TGTGCCGAATCCATTGCCTA+AGG - chr2_1:75257120-75257139 Msa0225190:three_prime_UTR 50.0%
CCGAATCCATTGCCTAAGGA+AGG - chr2_1:75257124-75257143 Msa0225190:three_prime_UTR 50.0%
GTACAAGCAGTAGAGCAGCT+AGG - chr2_1:75258551-75258570 Msa0225190:intron 50.0%
AGAGCAGCTAGGTGTGGATA+AGG - chr2_1:75258562-75258581 Msa0225190:intron 50.0%
AAGCAGCAAGCTGGAGTCAA+AGG - chr2_1:75259013-75259032 Msa0225190:intron 50.0%
! TCATTGGGTTGCACCAACCA+TGG - chr2_1:75259089-75259108 Msa0225190:CDS 50.0%
! CATTGGGTTGCACCAACCAT+GGG - chr2_1:75259090-75259109 Msa0225190:CDS 50.0%
TGGTGCCCCCATACATGTAA+AGG + chr2_1:75259150-75259169 None:intergenic 50.0%
TAAACGACTGATCCACGGGA+TGG + chr2_1:75259170-75259189 None:intergenic 50.0%
GGCTGGTGAGGCGAATATTT+AGG + chr2_1:75259204-75259223 None:intergenic 50.0%
! CAATACGAAGCGTTAGGAGG+TGG + chr2_1:75259258-75259277 None:intergenic 50.0%
CACCTCCTAACGCTTCGTAT+TGG - chr2_1:75259256-75259275 Msa0225190:CDS 50.0%
! TGCCAATACGAAGCGTTAGG+AGG + chr2_1:75259261-75259280 None:intergenic 50.0%
! CGCTTCGTATTGGCATCAAC+GGG - chr2_1:75259266-75259285 Msa0225190:CDS 50.0%
GTGGACCAGGACCATACAAT+TGG - chr2_1:75259411-75259430 Msa0225190:intron 50.0%
TGTGACCACACAATGGGGTT+TGG - chr2_1:75259511-75259530 Msa0225190:intron 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG + chr2_1:75260148-75260167 None:intergenic 50.0%
AAGCATGGTGTTCCTGCAGT+TGG + chr2_1:75260157-75260176 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG - chr2_1:75260177-75260196 Msa0225190:intron 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG - chr2_1:75260413-75260432 Msa0225190:intron 50.0%
AATTGGTACATGGCATGGGG+TGG + chr2_1:75260447-75260466 None:intergenic 50.0%
CGACAACACCGGGATCTAAT+TGG + chr2_1:75260464-75260483 None:intergenic 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG + chr2_1:75260501-75260520 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG + chr2_1:75260507-75260526 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG - chr2_1:75260509-75260528 Msa0225190:intron 50.0%
ACCGGATGGAAGTCTAAGAG+AGG + chr2_1:75260513-75260532 None:intergenic 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG + chr2_1:75260774-75260793 None:intergenic 50.0%
!! GCTTTAAGGCCAAGAGGCAA+TGG + chr2_1:75261049-75261068 None:intergenic 50.0%
CCCATTACACCTTCAAGTGC+TGG + chr2_1:75261073-75261092 None:intergenic 50.0%
CTCTCCTGTTCAAGCACAAG+AGG + chr2_1:75261131-75261150 None:intergenic 50.0%
CTCTTGTGCTTGAACAGGAG+AGG - chr2_1:75261129-75261148 Msa0225190:CDS 50.0%
ATTCTCCCTCAGCAGCAGTG+AGG - chr2_1:75256937-75256956 Msa0225190:three_prime_UTR 55.0%
CGATTCCTCACTGCTGCTGA+GGG + chr2_1:75256945-75256964 None:intergenic 55.0%
CCTCAGCAGCAGTGAGGAAT+CGG - chr2_1:75256943-75256962 Msa0225190:three_prime_UTR 55.0%
GCGCAATAACCACTTGCGCT+AGG - chr2_1:75257368-75257387 Msa0225190:intron 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG - chr2_1:75258556-75258575 Msa0225190:intron 55.0%
GAAGGTGGCTGGCGATGTTA+TGG + chr2_1:75258637-75258656 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG - chr2_1:75259004-75259023 Msa0225190:intron 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG - chr2_1:75259016-75259035 Msa0225190:intron 55.0%
ATGGGAGGGAAACCCATGGT+TGG + chr2_1:75259105-75259124 None:intergenic 55.0%
ATATTCGCCTCACCAGCCAC+CGG - chr2_1:75259206-75259225 Msa0225190:CDS 55.0%
! TCACCAGCCACCGGTTAACT+GGG - chr2_1:75259215-75259234 Msa0225190:CDS 55.0%
AGGGACCAAACCCCATTGTG+TGG + chr2_1:75259519-75259538 None:intergenic 55.0%
! ACACAATGGGGTTTGGTCCC+TGG - chr2_1:75259518-75259537 Msa0225190:intron 55.0%
GCTCCAAATGCACCAACTGC+AGG - chr2_1:75260142-75260161 Msa0225190:intron 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG + chr2_1:75260172-75260191 None:intergenic 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG + chr2_1:75260181-75260200 None:intergenic 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG - chr2_1:75260414-75260433 Msa0225190:intron 55.0%
AGGCTGAGGAGATGGTTGAC+CGG + chr2_1:75260493-75260512 None:intergenic 55.0%
!! GCTGGAGCTTTAAGGCCAAG+AGG + chr2_1:75261055-75261074 None:intergenic 55.0%
CCTGTTCAAGCACAAGAGGG+TGG + chr2_1:75261127-75261146 None:intergenic 55.0%
CCACCCTCTTGTGCTTGAAC+AGG - chr2_1:75261124-75261143 Msa0225190:CDS 55.0%
!! GGAAGCGGCAAGGGAGTGTT+TGG + chr2_1:75256340-75256359 None:intergenic 60.0%
CCGATTCCTCACTGCTGCTG+AGG + chr2_1:75256946-75256965 None:intergenic 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG + chr2_1:75258628-75258647 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG + chr2_1:75258633-75258652 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG + chr2_1:75258634-75258653 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG + chr2_1:75259109-75259128 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG + chr2_1:75259119-75259138 None:intergenic 60.0%
! TGGTGTACTGGTGGCATGGG+AGG + chr2_1:75259120-75259139 None:intergenic 60.0%
CAGTTAACCGGTGGCTGGTG+AGG + chr2_1:75259216-75259235 None:intergenic 60.0%
! CTCACCAGCCACCGGTTAAC+TGG - chr2_1:75259214-75259233 Msa0225190:CDS 60.0%
! GAAGCGTTAGGAGGTGGAGC+CGG + chr2_1:75259252-75259271 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG + chr2_1:75260444-75260463 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG + chr2_1:75260489-75260508 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG + chr2_1:75260490-75260509 None:intergenic 60.0%
!! TGTATGGGGGCACCATCCCG+TGG - chr2_1:75259155-75259174 Msa0225190:CDS 65.0%
GTGCCCAGTTAACCGGTGGC+TGG + chr2_1:75259221-75259240 None:intergenic 65.0%
GCAGGTGCCCAGTTAACCGG+TGG + chr2_1:75259225-75259244 None:intergenic 65.0%
CGCGCAGGTGCCCAGTTAAC+CGG + chr2_1:75259228-75259247 None:intergenic 65.0%
CGGTTAACTGGGCACCTGCG+CGG - chr2_1:75259226-75259245 Msa0225190:CDS 65.0%
GGTGGAATGCCCGGAACGGT+TGG + chr2_1:75260426-75260445 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG + chr2_1:75260430-75260449 None:intergenic 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG + chr2_1:75260435-75260454 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG + chr2_1:75260488-75260507 None:intergenic 65.0%
TAACTGGGCACCTGCGCGGC+CGG - chr2_1:75259230-75259249 Msa0225190:CDS 70.0%
ACCGGCGGGGACGACAACAC+CGG + chr2_1:75260475-75260494 None:intergenic 70.0%
CCGGCGGGGACGACAACACC+GGG + chr2_1:75260474-75260493 None:intergenic 75.0%
!! CCCGGTGTTGTCGTCCCCGC+CGG - chr2_1:75260471-75260490 Msa0225190:intron 75.0%
! GGAGGTGGAGCCGGCCGCGC+AGG + chr2_1:75259243-75259262 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75256041 75262271 75256041 ID=Msa0225190;Name=Msa0225190
chr2_1 mRNA 75256041 75262271 75256041 ID=Msa0225190-mRNA-1;Parent=Msa0225190;Name=Msa0225190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=490|1|1|1|0.83|0.71|7|1130|423
chr2_1 exon 75256041 75257320 75256041 ID=Msa0225190-mRNA-1:exon:22484;Parent=Msa0225190-mRNA-1
chr2_1 exon 75257782 75257901 75257782 ID=Msa0225190-mRNA-1:exon:22483;Parent=Msa0225190-mRNA-1
chr2_1 exon 75258114 75258170 75258114 ID=Msa0225190-mRNA-1:exon:22482;Parent=Msa0225190-mRNA-1
chr2_1 exon 75259025 75259342 75259025 ID=Msa0225190-mRNA-1:exon:22481;Parent=Msa0225190-mRNA-1
chr2_1 exon 75259654 75259794 75259654 ID=Msa0225190-mRNA-1:exon:22480;Parent=Msa0225190-mRNA-1
chr2_1 exon 75261102 75261628 75261102 ID=Msa0225190-mRNA-1:exon:22479;Parent=Msa0225190-mRNA-1
chr2_1 exon 75261823 75262271 75261823 ID=Msa0225190-mRNA-1:exon:22478;Parent=Msa0225190-mRNA-1
chr2_1 five_prime_UTR 75261823 75262271 75261823 ID=Msa0225190-mRNA-1:five_prime_utr;Parent=Msa0225190-mRNA-1
chr2_1 five_prime_UTR 75261588 75261628 75261588 ID=Msa0225190-mRNA-1:five_prime_utr;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75261102 75261587 75261102 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75259654 75259794 75259654 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75259025 75259342 75259025 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75258114 75258170 75258114 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75257782 75257901 75257782 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 CDS 75257171 75257320 75257171 ID=Msa0225190-mRNA-1:cds;Parent=Msa0225190-mRNA-1
chr2_1 three_prime_UTR 75256041 75257170 75256041 ID=Msa0225190-mRNA-1:three_prime_utr;Parent=Msa0225190-mRNA-1
Gene Sequence

>Msa0225190

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAACAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTCGAATTCGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCAGAAATGCTTGCTGAATTCTCCCTCAGCAGCAGTGAGGAATCGGATATAAATTCATTAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCCTCATGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACCGGTTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA
Protein sequence

>Msa0225190

MLAVAPLSSIRDESQTEMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSSEESDINSLGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPPVNWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA*