AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0882480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882480 MtrunA17_Chr6g0462031 97.934 242 2 1 1 239 1 242 7.24e-176 483
Msa0882480 MtrunA17_Chr4g0006181 37.743 257 109 6 22 231 88 340 1.88e-44 152
Msa0882480 MtrunA17_Chr3g0092091 37.970 266 117 10 1 235 1 249 2.03e-42 144
Msa0882480 MtrunA17_Chr8g0345631 40.758 211 97 7 46 237 66 267 8.42e-42 143
Msa0882480 MtrunA17_Chr3g0133901 38.565 223 105 7 33 235 52 262 4.01e-41 141
Msa0882480 MtrunA17_Chr2g0301081 40.976 205 93 7 46 231 65 260 1.91e-40 139
Msa0882480 MtrunA17_Chr6g0476641 38.743 191 107 3 53 235 91 279 2.07e-37 132
Msa0882480 MtrunA17_Chr6g0453181 42.408 191 94 6 53 230 66 253 1.93e-36 129
Msa0882480 MtrunA17_Chr5g0448411 37.959 245 116 9 16 231 31 268 1.96e-36 129
Msa0882480 MtrunA17_Chr6g0453151 42.487 193 91 6 53 230 133 320 2.36e-36 130
Msa0882480 MtrunA17_Chr4g0051941 43.147 197 91 7 49 230 64 254 2.91e-36 129
Msa0882480 MtrunA17_Chr6g0453141 42.487 193 91 6 53 230 66 253 3.33e-36 129
Msa0882480 MtrunA17_Chr5g0448421 38.710 248 112 10 16 231 31 270 3.99e-35 126
Msa0882480 MtrunA17_Chr5g0447531 39.474 228 100 9 36 230 31 253 7.61e-35 125
Msa0882480 MtrunA17_Chr6g0453161 42.487 193 91 6 53 230 68 255 2.87e-34 128
Msa0882480 MtrunA17_Chr6g0453161 41.969 193 92 6 53 230 333 520 1.28e-33 127
Msa0882480 MtrunA17_Chr1g0157481 39.000 200 100 6 53 231 125 323 7.45e-34 124
Msa0882480 MtrunA17_Chr3g0113311 34.545 220 96 5 46 221 60 275 6.08e-31 115
Msa0882480 MtrunA17_Chr2g0318521 37.104 221 110 9 36 230 35 252 5.48e-30 112
Msa0882480 MtrunA17_Chr6g0464511 38.202 178 86 6 53 230 47 200 5.12e-23 92.8
Msa0882480 MtrunA17_Chr2g0279001 33.846 195 79 6 46 201 60 243 2.62e-21 89.4
Msa0882480 MtrunA17_Chr6g0453171 56.061 66 28 1 165 230 22 86 6.22e-19 79.0
Msa0882480 MtrunA17_Chr2g0296081 46.479 71 33 2 165 235 36 101 1.54e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882480 AT3G54890.1 82.845 239 39 2 1 237 1 239 7.12e-140 392
Msa0882480 AT3G54890.4 81.122 196 35 2 1 194 1 196 7.32e-108 310
Msa0882480 AT3G54890.2 69.456 239 37 3 1 237 1 205 1.64e-106 306
Msa0882480 AT3G54890.3 74.684 158 37 3 1 155 1 158 1.30e-72 219
Msa0882480 AT3G08940.2 38.113 265 111 7 16 231 20 280 1.03e-46 157
Msa0882480 AT3G47470.1 37.452 259 121 8 1 231 1 246 1.30e-44 150
Msa0882480 AT5G01530.1 39.496 238 93 6 41 231 50 283 2.56e-44 150
Msa0882480 AT3G61470.1 40.284 211 98 7 46 237 55 256 2.59e-40 139
Msa0882480 AT1G45474.2 37.327 217 101 5 44 236 47 252 2.87e-40 139
Msa0882480 AT1G45474.1 37.327 217 101 5 44 236 47 252 2.87e-40 139
Msa0882480 AT2G34430.1 44.103 195 93 6 49 230 63 254 1.48e-38 135
Msa0882480 AT2G34420.1 44.103 195 93 6 49 230 62 253 1.63e-38 135
Msa0882480 AT2G40100.1 38.356 219 88 4 46 221 59 273 3.37e-38 134
Msa0882480 AT4G10340.1 39.791 191 105 3 53 235 82 270 3.63e-38 134
Msa0882480 AT1G29920.1 43.455 191 93 5 53 230 67 255 3.81e-38 134
Msa0882480 AT1G29910.1 43.455 191 93 5 53 230 67 255 3.81e-38 134
Msa0882480 AT1G29930.1 43.455 191 93 5 53 230 67 255 4.19e-38 134
Msa0882480 AT1G19150.1 39.512 205 96 7 46 231 68 263 7.69e-38 133
Msa0882480 AT2G05100.1 41.451 193 93 6 53 230 66 253 3.91e-35 126
Msa0882480 AT2G05070.1 41.451 193 93 6 53 230 66 253 4.16e-35 126
Msa0882480 AT3G27690.2 40.933 193 94 6 53 230 99 286 3.24e-34 124
Msa0882480 AT3G27690.1 40.933 193 94 6 53 230 67 254 3.89e-34 124
Msa0882480 AT1G61520.3 40.465 215 95 9 46 231 56 266 1.45e-33 122
Msa0882480 AT1G61520.1 40.465 215 95 9 46 231 56 266 1.45e-33 122
Msa0882480 AT1G76570.1 37.000 200 104 6 53 231 123 321 1.82e-32 120
Msa0882480 AT5G54270.1 34.766 256 138 8 1 230 1 253 5.50e-32 118
Msa0882480 AT1G61520.2 40.594 202 87 9 59 231 14 211 4.49e-30 112
Msa0882480 AT2G05100.2 39.645 169 83 5 53 206 66 230 1.03e-26 105
Msa0882480 AT1G15820.1 35.165 182 74 6 53 201 70 240 2.29e-20 87.4
Msa0882480 AT5G28450.1 53.333 75 32 3 165 237 99 172 1.98e-15 72.0

Find 90 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATCTTGTTCCAATTTA+AGG 0.113087 6_1:+31793474 None:intergenic
AACTGGACCTTTGGAGAATT+TGG 0.162428 6_1:-31793710 Msa0882480:CDS
ACCCAATGGAAATCCAATTT+TGG 0.171044 6_1:-31796401 Msa0882480:five_prime_UTR
ATGCATGCAGCCAGGGATTT+TGG 0.202155 6_1:-31794803 Msa0882480:intron
AGAGAATATAGGAGAGTGTT+AGG 0.215421 6_1:+31796365 None:intergenic
GATATTGGAAAATCCAAAAT+TGG 0.226960 6_1:+31796388 None:intergenic
AAAGGAGTTAAACCTTAAAT+TGG 0.231544 6_1:-31793486 Msa0882480:three_prime_UTR
TCATGACAAAATAATGTATT+TGG 0.241995 6_1:+31793572 None:intergenic
GGGAACCCTACCCACCATTT+TGG 0.273714 6_1:-31794683 Msa0882480:CDS
TAGGAGAGTGTTAGGGATAT+TGG 0.303406 6_1:+31796373 None:intergenic
ATATTTATTGCGGTGGAATA+AGG 0.305874 6_1:+31793644 None:intergenic
GGTAGGGTTCCCCATGGAAC+AGG 0.309462 6_1:+31794694 None:intergenic
CCTAGACCACCTTACCTTGA+TGG 0.314069 6_1:-31796097 Msa0882480:CDS
TTCTCCAAAGGTCCAGTTCC+TGG 0.317892 6_1:+31793715 None:intergenic
ATGTTAGTTTACTTCTATAA+AGG 0.329474 6_1:+31793409 None:intergenic
GTACCTGAGGCATTGGGATT+AGG 0.335566 6_1:-31794781 Msa0882480:CDS
TGTTGAGCACCAAAGGAGTA+TGG 0.346828 6_1:-31794635 Msa0882480:CDS
ATTAGGACGTCTTGCTTTGT+TGG 0.354009 6_1:-31793773 Msa0882480:intron
AGGTAGGTTGCTTGTCCTCC+TGG 0.354556 6_1:+31794724 None:intergenic
GGTCTTTCTCCATACTCCTT+TGG 0.357030 6_1:+31794626 None:intergenic
ATTGGAACAAGATATATCTA+TGG 0.361253 6_1:-31793468 Msa0882480:three_prime_UTR
TACCTTGATGGTTCAGCTCC+AGG 0.367208 6_1:-31796085 Msa0882480:CDS
AGGCATTGGGATTAGGCAAC+TGG 0.371841 6_1:-31794774 Msa0882480:CDS
CAAGAATGGGCAGCACTTCC+AGG 0.383621 6_1:-31794742 Msa0882480:CDS
AAGGAATTCAATGACCAAAA+TGG 0.388111 6_1:+31794669 None:intergenic
TATAACAAAGATTGATTTGA+GGG 0.395396 6_1:+31793619 None:intergenic
TCCAAAATTGGATTTCCATT+GGG 0.399822 6_1:+31796400 None:intergenic
GATTCACCATGACTTCTGAT+TGG 0.414343 6_1:-31796132 Msa0882480:CDS
ATGACTTCTGATTGGATGCC+TGG 0.414908 6_1:-31796124 Msa0882480:CDS
ATCCAAAATTGGATTTCCAT+TGG 0.416315 6_1:+31796399 None:intergenic
TCATGAATCAGATCTCTCTA+TGG 0.424717 6_1:-31793555 Msa0882480:three_prime_UTR
CCATCAAGGTAAGGTGGTCT+AGG 0.434279 6_1:+31796097 None:intergenic
TTGAATCTCTCAAGATTCTC+AGG 0.437523 6_1:+31795360 None:intergenic
TCAAATTTAATTACAAAGAC+AGG 0.441517 6_1:+31793523 None:intergenic
GGATTTGATCCTCTACGTCT+TGG 0.447228 6_1:-31795390 Msa0882480:CDS
GGAGAATTTGGCTACTCACT+TGG 0.449694 6_1:-31793698 Msa0882480:CDS
ACATAAGTGTGAGAGAATAT+AGG 0.467602 6_1:+31796354 None:intergenic
ATATCCAGGAACTGGACCTT+TGG 0.468791 6_1:-31793719 Msa0882480:CDS
CTGAACTCATTCACTGCAGA+TGG 0.472063 6_1:-31795332 Msa0882480:CDS
GAAGCATTTGTGCAAGGAAG+TGG 0.473273 6_1:+31796160 None:intergenic
CCCATGGAACAGGGTTTCCT+AGG 0.476532 6_1:+31794704 None:intergenic
CAAGGTAAGGTGGTCTAGGC+TGG 0.482410 6_1:+31796101 None:intergenic
TGACAAAATAATGTATTTGG+TGG 0.482632 6_1:+31793575 None:intergenic
CCTAGGAAACCCTGTTCCAT+GGG 0.483167 6_1:-31794704 Msa0882480:CDS
ACTGGGTGAAAGCACAAGAA+TGG 0.489559 6_1:-31794756 Msa0882480:CDS
ACCTTGATGGTTCAGCTCCA+GGG 0.491528 6_1:-31796084 Msa0882480:intron
CAAACAGCATATCCAGGAAC+TGG 0.497647 6_1:-31793727 Msa0882480:CDS
ACCTAGGAAACCCTGTTCCA+TGG 0.497834 6_1:-31794705 Msa0882480:CDS
GAGAATATAGGAGAGTGTTA+GGG 0.503052 6_1:+31796366 None:intergenic
GCTCAACAAAAGCAATAGAA+AGG 0.508788 6_1:+31794650 None:intergenic
TAAGGTGGTCTAGGCTGGCC+AGG 0.516124 6_1:+31796106 None:intergenic
GCCTCAGGTACCAAAATCCC+TGG 0.520369 6_1:+31794793 None:intergenic
TTTGAGGAAGAAAGAAGTGA+TGG 0.520641 6_1:+31796205 None:intergenic
TGGAACAGGGTTTCCTAGGT+AGG 0.521985 6_1:+31794708 None:intergenic
TTGATAATATTAAGCATCAA+AGG 0.522278 6_1:-31793504 Msa0882480:three_prime_UTR
CTGGGTGAAAGCACAAGAAT+GGG 0.523123 6_1:-31794755 Msa0882480:CDS
CTACTCACTTGGCTGATCCA+TGG 0.524507 6_1:-31793687 Msa0882480:CDS
CAATGACCAAAATGGTGGGT+AGG 0.530752 6_1:+31794677 None:intergenic
TTGCCTAATCCCAATGCCTC+AGG 0.531772 6_1:+31794778 None:intergenic
AAAATCAAAGAAGTTAAGAA+TGG 0.539315 6_1:-31794526 Msa0882480:intron
AATGACCAAAATGGTGGGTA+GGG 0.541785 6_1:+31794678 None:intergenic
TTGCCAATGTTGTTGTGCCA+TGG 0.546443 6_1:+31793670 None:intergenic
GGAGGACAAGCAACCTACCT+AGG 0.548536 6_1:-31794721 Msa0882480:CDS
GATCCATGGCACAACAACAT+TGG 0.552198 6_1:-31793673 Msa0882480:CDS
GTAGGGTTCCCCATGGAACA+GGG 0.556039 6_1:+31794695 None:intergenic
ATATAACAAAGATTGATTTG+AGG 0.556606 6_1:+31793618 None:intergenic
TGTTGTGTGACAGACAAGAA+TGG 0.560787 6_1:-31796266 Msa0882480:exon
AAAGGATCAAAAGCACCACC+AGG 0.562866 6_1:+31794586 None:intergenic
GAATTCAATGACCAAAATGG+TGG 0.574206 6_1:+31794672 None:intergenic
GATACTTACAACAGCAAGCA+TGG 0.578696 6_1:+31795308 None:intergenic
TTTGAGGGAGATATTTATTG+CGG 0.579609 6_1:+31793634 None:intergenic
AGGCATCCAATCAGAAGTCA+TGG 0.583801 6_1:+31796126 None:intergenic
GGAGCTGAACCATCAAGGTA+AGG 0.587136 6_1:+31796088 None:intergenic
TGAACTCATTCACTGCAGAT+GGG 0.591140 6_1:-31795331 Msa0882480:CDS
ACCCTGGAGCTGAACCATCA+AGG 0.592237 6_1:+31796083 None:intergenic
GTTCAACAAACAGCATATCC+AGG 0.600057 6_1:-31793733 Msa0882480:CDS
GGCATTGGGATTAGGCAACT+GGG 0.600276 6_1:-31794773 Msa0882480:CDS
GAGGGAGATATTTATTGCGG+TGG 0.605032 6_1:+31793637 None:intergenic
CTAGAAGAAGCATTTGTGCA+AGG 0.615959 6_1:+31796154 None:intergenic
GGGTCTTTAGAGTATCCCAA+AGG 0.632066 6_1:+31794568 None:intergenic
AATTCAATGACCAAAATGGT+GGG 0.634135 6_1:+31794673 None:intergenic
TGAGTAGCCAAATTCTCCAA+AGG 0.641644 6_1:+31793703 None:intergenic
GCTGAACCATCAAGGTAAGG+TGG 0.647312 6_1:+31796091 None:intergenic
GGTACTTCACCAAGACGTAG+AGG 0.665865 6_1:+31795381 None:intergenic
ATGGTGGGTAGGGTTCCCCA+TGG 0.665899 6_1:+31794688 None:intergenic
CCTGAAAAGAAGAAATACCC+TGG 0.684859 6_1:-31794604 Msa0882480:CDS
AAGGATCAAAAGCACCACCA+GGG 0.706196 6_1:+31794587 None:intergenic
GAATGGGCAGCACTTCCAGG+AGG 0.710142 6_1:-31794739 Msa0882480:CDS
CTAGGAAACCCTGTTCCATG+GGG 0.721785 6_1:-31794703 Msa0882480:CDS
GAAAAGAAGAAATACCCTGG+TGG 0.755288 6_1:-31794601 Msa0882480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTGATATTGAAATA+TGG - chr6_1:31794153-31794172 Msa0882480:intron 10.0%
!!! ACCATTATTTATTCTTTTTT+TGG - chr6_1:31793748-31793767 Msa0882480:CDS 15.0%
!! ACCAAAAAAAGAATAAATAA+TGG + chr6_1:31793752-31793771 None:intergenic 15.0%
!!! AAATATGTTTTAAGAGTTAA+AGG - chr6_1:31794290-31794309 Msa0882480:intron 15.0%
!!! AAATAAGTTTAGTTTTCTTT+TGG - chr6_1:31794509-31794528 Msa0882480:intron 15.0%
!! TAATTTCGACAAAATTTAAA+TGG + chr6_1:31795858-31795877 None:intergenic 15.0%
!!! ACATTTCTGAAATTATTATT+TGG - chr6_1:31795902-31795921 Msa0882480:intron 15.0%
!! CTTGTATATTATATGAAGTA+TGG - chr6_1:31793937-31793956 Msa0882480:intron 20.0%
!!! TAACCAAATAAAGCTTTATA+TGG + chr6_1:31794017-31794036 None:intergenic 20.0%
!!! TAGTGTATGAATATTTTTTG+TGG - chr6_1:31794347-31794366 Msa0882480:intron 20.0%
!!! TAGTTTTCAATATCGATATT+AGG - chr6_1:31794672-31794691 Msa0882480:CDS 20.0%
!! AAAATCAAAGAAGTTAAGAA+TGG - chr6_1:31795255-31795274 Msa0882480:intron 20.0%
!! AACATATCTATATCTATCTT+AGG + chr6_1:31795313-31795332 None:intergenic 20.0%
!!! ATGTTATTTGAACATCAATA+TGG + chr6_1:31795886-31795905 None:intergenic 20.0%
!! ATTTGAATGTTGTATAGTAT+AGG - chr6_1:31795932-31795951 Msa0882480:intron 20.0%
!!! TATAACAAAGATTGATTTGA+GGG + chr6_1:31796165-31796184 None:intergenic 20.0%
!!! ATATAACAAAGATTGATTTG+AGG + chr6_1:31796166-31796185 None:intergenic 20.0%
!! TCATGACAAAATAATGTATT+TGG + chr6_1:31796212-31796231 None:intergenic 20.0%
!! TCAAATTTAATTACAAAGAC+AGG + chr6_1:31796261-31796280 None:intergenic 20.0%
!!! TTGATAATATTAAGCATCAA+AGG - chr6_1:31796277-31796296 Msa0882480:five_prime_UTR 20.0%
!! ATATATCTTGTTCCAATTTA+AGG + chr6_1:31796310-31796329 None:intergenic 20.0%
!!! ATGTTAGTTTACTTCTATAA+AGG + chr6_1:31796375-31796394 None:intergenic 20.0%
! GATATTGGAAAATCCAAAAT+TGG + chr6_1:31793396-31793415 None:intergenic 25.0%
!! AGTTGAAAATCTTGATTTTG+AGG + chr6_1:31793595-31793614 None:intergenic 25.0%
! ATATAAATATACACATACCC+TGG + chr6_1:31793717-31793736 None:intergenic 25.0%
! GACATGTAAGAATATTTAAG+AGG + chr6_1:31793877-31793896 None:intergenic 25.0%
!!! CATCCATATAAAGCTTTATT+TGG - chr6_1:31794011-31794030 Msa0882480:intron 25.0%
! TGTGATTGTTTGATCAAAAT+CGG - chr6_1:31794086-31794105 Msa0882480:intron 25.0%
! TTTCAATATCGATATTAGGT+AGG - chr6_1:31794676-31794695 Msa0882480:CDS 25.0%
!! TGTATTCATGGAACTTTTTA+GGG + chr6_1:31795236-31795255 None:intergenic 25.0%
!! TTGTATTCATGGAACTTTTT+AGG + chr6_1:31795237-31795256 None:intergenic 25.0%
!!! CTTCTTTGATTTTGTATTCA+TGG + chr6_1:31795248-31795267 None:intergenic 25.0%
! TGATTCATGTTCAAATTTCA+TGG + chr6_1:31795467-31795486 None:intergenic 25.0%
! ACATGAATCATGATTTATCA+AGG - chr6_1:31795477-31795496 Msa0882480:intron 25.0%
! ATTTGAATACCTGAAAATCA+TGG - chr6_1:31795518-31795537 Msa0882480:intron 25.0%
! GGTTAATGAAATGTTAGATT+TGG + chr6_1:31795608-31795627 None:intergenic 25.0%
! CAAAATTTAAATGGTTAACG+CGG + chr6_1:31795849-31795868 None:intergenic 25.0%
! AATGTTGTATAGTATAGGAT+AGG - chr6_1:31795937-31795956 Msa0882480:intron 25.0%
! CTTTGTTGAATGTTTGTATT+AGG - chr6_1:31795991-31796010 Msa0882480:intron 25.0%
! TGACAAAATAATGTATTTGG+TGG + chr6_1:31796209-31796228 None:intergenic 25.0%
! AAAGGAGTTAAACCTTAAAT+TGG - chr6_1:31796295-31796314 Msa0882480:five_prime_UTR 25.0%
! ATTGGAACAAGATATATCTA+TGG - chr6_1:31796313-31796332 Msa0882480:five_prime_UTR 25.0%
ATCCAAAATTGGATTTCCAT+TGG + chr6_1:31793385-31793404 None:intergenic 30.0%
ACATAAGTGTGAGAGAATAT+AGG + chr6_1:31793430-31793449 None:intergenic 30.0%
!!! CAAGAAGTGTCTACTATTTT+TGG + chr6_1:31793491-31793510 None:intergenic 30.0%
GTTAAGAAAATAGAAGTCGT+CGG - chr6_1:31794033-31794052 Msa0882480:intron 30.0%
! TTTTTGTGTTACAGTGACTT+TGG - chr6_1:31794370-31794389 Msa0882480:intron 30.0%
TGAAAACTACTATGAAGTAC+TGG + chr6_1:31794661-31794680 None:intergenic 30.0%
TCGATATTAGGTAGGTTTAA+TGG - chr6_1:31794684-31794703 Msa0882480:CDS 30.0%
TTAGGTAGGTTTAATGGAAT+CGG - chr6_1:31794690-31794709 Msa0882480:CDS 30.0%
AATATCTAGACCGTTTGAAA+CGG - chr6_1:31794756-31794775 Msa0882480:CDS 30.0%
CAAATGGTCTAGATTTCAAA+CGG + chr6_1:31794819-31794838 None:intergenic 30.0%
TAAACCTAGGTAGGTTTAAA+CGG + chr6_1:31794864-31794883 None:intergenic 30.0%
AATTCAATGACCAAAATGGT+GGG + chr6_1:31795111-31795130 None:intergenic 30.0%
AAGGAATTCAATGACCAAAA+TGG + chr6_1:31795115-31795134 None:intergenic 30.0%
ATATTTATTGCGGTGGAATA+AGG + chr6_1:31796140-31796159 None:intergenic 30.0%
TTTGAGGGAGATATTTATTG+CGG + chr6_1:31796150-31796169 None:intergenic 30.0%
!! GAGAATATAGGAGAGTGTTA+GGG + chr6_1:31793418-31793437 None:intergenic 35.0%
!! AGAGAATATAGGAGAGTGTT+AGG + chr6_1:31793419-31793438 None:intergenic 35.0%
TTTGAGGAAGAAAGAAGTGA+TGG + chr6_1:31793579-31793598 None:intergenic 35.0%
AGAGAGTTGAATTGTTGTAG+TGG - chr6_1:31793801-31793820 Msa0882480:intron 35.0%
GTATGGACACTCCTAAATTT+AGG - chr6_1:31793954-31793973 Msa0882480:intron 35.0%
ATCCAGACACACCTAAATTT+AGG + chr6_1:31793968-31793987 None:intergenic 35.0%
TTGAATCTCTCAAGATTCTC+AGG + chr6_1:31794424-31794443 None:intergenic 35.0%
!!! ACCGAACGGTTTTGATTTAA+CGG - chr6_1:31794555-31794574 Msa0882480:CDS 35.0%
ACCGTTAAATCAAAACCGTT+CGG + chr6_1:31794559-31794578 None:intergenic 35.0%
TTGATCTAGACCGTTTCAAA+CGG + chr6_1:31794769-31794788 None:intergenic 35.0%
TTGAAACGGTCTAGATCAAA+CGG - chr6_1:31794770-31794789 Msa0882480:CDS 35.0%
CTAGATCAAACGGTCTAAAT+CGG - chr6_1:31794780-31794799 Msa0882480:CDS 35.0%
TAAACCTACCTAGGTTTATG+TGG - chr6_1:31794866-31794885 Msa0882480:intron 35.0%
TCATATTGCCACATAAACCT+AGG + chr6_1:31794877-31794896 None:intergenic 35.0%
! GACGAGTTTTCGTTGAATAT+CGG - chr6_1:31794895-31794914 Msa0882480:intron 35.0%
TTATATTATGCATGCAGCCA+GGG - chr6_1:31794971-31794990 Msa0882480:intron 35.0%
GAATTCAATGACCAAAATGG+TGG + chr6_1:31795112-31795131 None:intergenic 35.0%
GCTCAACAAAAGCAATAGAA+AGG + chr6_1:31795134-31795153 None:intergenic 35.0%
!! CAGGGTATTTCTTCTTTTCA+GGG + chr6_1:31795179-31795198 None:intergenic 35.0%
!! GTTGTCGAATTTTAGTGTCA+CGG + chr6_1:31795350-31795369 None:intergenic 35.0%
CAGCAACGTTAAAACTCTTA+GGG - chr6_1:31795735-31795754 Msa0882480:intron 35.0%
!!! GCGGTTTTTTGGTGTAAATT+GGG + chr6_1:31795830-31795849 None:intergenic 35.0%
!!! AAATGGTTAACGCGGTTTTT+TGG + chr6_1:31795841-31795860 None:intergenic 35.0%
TCATGAATCAGATCTCTCTA+TGG - chr6_1:31796226-31796245 Msa0882480:CDS 35.0%
!! TAGGAGAGTGTTAGGGATAT+TGG + chr6_1:31793411-31793430 None:intergenic 40.0%
TGTTGTGTGACAGACAAGAA+TGG - chr6_1:31793515-31793534 Msa0882480:three_prime_UTR 40.0%
!! CTAGAAGAAGCATTTGTGCA+AGG + chr6_1:31793630-31793649 None:intergenic 40.0%
GATTCACCATGACTTCTGAT+TGG - chr6_1:31793649-31793668 Msa0882480:CDS 40.0%
CTCCTAAATTTAGGTGTGTC+TGG - chr6_1:31793963-31793982 Msa0882480:intron 40.0%
AATTCTCGCATTCATGAGGT+CGG - chr6_1:31794057-31794076 Msa0882480:intron 40.0%
TTGATCCAACAGCCTTTGAT+GGG - chr6_1:31794187-31794206 Msa0882480:intron 40.0%
! ATTTTCCGCATTCATGCAGT+CGG + chr6_1:31794213-31794232 None:intergenic 40.0%
TAGTCACCTCTCCTCATATT+TGG - chr6_1:31794248-31794267 Msa0882480:intron 40.0%
AGTCACCTCTCCTCATATTT+GGG - chr6_1:31794249-31794268 Msa0882480:intron 40.0%
ACTTAAGCTCCCCAAATATG+AGG + chr6_1:31794262-31794281 None:intergenic 40.0%
TGAACTCATTCACTGCAGAT+GGG - chr6_1:31794450-31794469 Msa0882480:intron 40.0%
GATACTTACAACAGCAAGCA+TGG + chr6_1:31794476-31794495 None:intergenic 40.0%
TCGATCCAACAGACATTGAT+GGG + chr6_1:31794716-31794735 None:intergenic 40.0%
TCTGTTGGATCGAGATCAAA+CGG - chr6_1:31794723-31794742 Msa0882480:CDS 40.0%
TTTCAAACGGTCCATCAGAT+GGG + chr6_1:31794806-31794825 None:intergenic 40.0%
ATTTCAAACGGTCCATCAGA+TGG + chr6_1:31794807-31794826 None:intergenic 40.0%
TTTAAACGGTCAATGGCTGT+TGG + chr6_1:31794850-31794869 None:intergenic 40.0%
AGGTAGGTTTAAACGGTCAA+TGG + chr6_1:31794857-31794876 None:intergenic 40.0%
TTGACCGTTTAAACCTACCT+AGG - chr6_1:31794857-31794876 Msa0882480:intron 40.0%
ATTGCCACATAAACCTAGGT+AGG + chr6_1:31794873-31794892 None:intergenic 40.0%
CGGTGCAAAGCTATTATACA+CGG - chr6_1:31794915-31794934 Msa0882480:intron 40.0%
GTTATATTATGCATGCAGCC+AGG - chr6_1:31794970-31794989 Msa0882480:intron 40.0%
!! ATTTTGGTACCTGAGGCATT+GGG - chr6_1:31794994-31795013 Msa0882480:intron 40.0%
!! AATGACCAAAATGGTGGGTA+GGG + chr6_1:31795106-31795125 None:intergenic 40.0%
!! TTGCTTTTGTTGAGCACCAA+AGG - chr6_1:31795139-31795158 Msa0882480:intron 40.0%
!! CCAGGGTATTTCTTCTTTTC+AGG + chr6_1:31795180-31795199 None:intergenic 40.0%
CCTGAAAAGAAGAAATACCC+TGG - chr6_1:31795177-31795196 Msa0882480:intron 40.0%
GAAAAGAAGAAATACCCTGG+TGG - chr6_1:31795180-31795199 Msa0882480:intron 40.0%
! CGCGATTAACCATGATTTTC+AGG + chr6_1:31795530-31795549 None:intergenic 40.0%
GTTAACGCAGTTTACACGTA+TGG + chr6_1:31795629-31795648 None:intergenic 40.0%
CTGGGTTTGAATCTAGACTT+GGG - chr6_1:31795708-31795727 Msa0882480:intron 40.0%
GCAGCAACGTTAAAACTCTT+AGG - chr6_1:31795734-31795753 Msa0882480:intron 40.0%
! ACAAATCCATCGAGCATTGT+GGG + chr6_1:31795783-31795802 None:intergenic 40.0%
!!! CGCGGTTTTTTGGTGTAAAT+TGG + chr6_1:31795831-31795850 None:intergenic 40.0%
ATTAGGACGTCTTGCTTTGT+TGG - chr6_1:31796008-31796027 Msa0882480:intron 40.0%
!!! CTTGCTTTGTTGGCTTTTGT+TGG - chr6_1:31796018-31796037 Msa0882480:intron 40.0%
GTTCAACAAACAGCATATCC+AGG - chr6_1:31796048-31796067 Msa0882480:intron 40.0%
! AACTGGACCTTTGGAGAATT+TGG - chr6_1:31796071-31796090 Msa0882480:intron 40.0%
TGAGTAGCCAAATTCTCCAA+AGG + chr6_1:31796081-31796100 None:intergenic 40.0%
! GAAGCATTTGTGCAAGGAAG+TGG + chr6_1:31793624-31793643 None:intergenic 45.0%
AGGCATCCAATCAGAAGTCA+TGG + chr6_1:31793658-31793677 None:intergenic 45.0%
ATGACTTCTGATTGGATGCC+TGG - chr6_1:31793657-31793676 Msa0882480:CDS 45.0%
TGTTCGACATGTGTCGAACA+TGG - chr6_1:31793987-31794006 Msa0882480:intron 45.0%
CGGTAATTCTCGCATTCATG+AGG - chr6_1:31794053-31794072 Msa0882480:intron 45.0%
GCTGTTGGATCAAGATCAGA+TGG + chr6_1:31794180-31794199 None:intergenic 45.0%
CTTGATCCAACAGCCTTTGA+TGG - chr6_1:31794186-31794205 Msa0882480:intron 45.0%
GTCACCTCTCCTCATATTTG+GGG - chr6_1:31794250-31794269 Msa0882480:intron 45.0%
GGATTTGATCCTCTACGTCT+TGG - chr6_1:31794391-31794410 Msa0882480:intron 45.0%
CTGAACTCATTCACTGCAGA+TGG - chr6_1:31794449-31794468 Msa0882480:intron 45.0%
CTAGTAGCTGTGAAACCGAA+CGG - chr6_1:31794541-31794560 Msa0882480:CDS 45.0%
CTCGATCCAACAGACATTGA+TGG + chr6_1:31794717-31794736 None:intergenic 45.0%
GCTGTTGGATCGAGATCAAA+TGG + chr6_1:31794835-31794854 None:intergenic 45.0%
!! GATTTTGGTACCTGAGGCAT+TGG - chr6_1:31794993-31795012 Msa0882480:intron 45.0%
! ACTGGGTGAAAGCACAAGAA+TGG - chr6_1:31795025-31795044 Msa0882480:intron 45.0%
! CTGGGTGAAAGCACAAGAAT+GGG - chr6_1:31795026-31795045 Msa0882480:intron 45.0%
!! CAATGACCAAAATGGTGGGT+AGG + chr6_1:31795107-31795126 None:intergenic 45.0%
TGTTGAGCACCAAAGGAGTA+TGG - chr6_1:31795146-31795165 Msa0882480:intron 45.0%
GGTCTTTCTCCATACTCCTT+TGG + chr6_1:31795158-31795177 None:intergenic 45.0%
!! AAGGATCAAAAGCACCACCA+GGG + chr6_1:31795197-31795216 None:intergenic 45.0%
!! AAAGGATCAAAAGCACCACC+AGG + chr6_1:31795198-31795217 None:intergenic 45.0%
!! TGGTGGTGCTTTTGATCCTT+TGG - chr6_1:31795197-31795216 Msa0882480:intron 45.0%
! GGTGGTGCTTTTGATCCTTT+GGG - chr6_1:31795198-31795217 Msa0882480:intron 45.0%
!! GGGTCTTTAGAGTATCCCAA+AGG + chr6_1:31795216-31795235 None:intergenic 45.0%
AGTAACACGTTTCACACACG+TGG - chr6_1:31795380-31795399 Msa0882480:CDS 45.0%
GCAGTGCAATGAGTGGTTAT+TGG - chr6_1:31795408-31795427 Msa0882480:intron 45.0%
ACTGCGTTAACTCTTAACCC+AGG - chr6_1:31795638-31795657 Msa0882480:intron 45.0%
!! GGTCTCTTCTAGCTTAACCA+AGG - chr6_1:31795683-31795702 Msa0882480:intron 45.0%
!! TTCTAGCTTAACCAAGGTCC+TGG - chr6_1:31795689-31795708 Msa0882480:intron 45.0%
! TCTAGCTTAACCAAGGTCCT+GGG - chr6_1:31795690-31795709 Msa0882480:intron 45.0%
TAGATTCAAACCCAGGACCT+TGG + chr6_1:31795703-31795722 None:intergenic 45.0%
CCAAGTCTAGATTCAAACCC+AGG + chr6_1:31795710-31795729 None:intergenic 45.0%
CCTGGGTTTGAATCTAGACT+TGG - chr6_1:31795707-31795726 Msa0882480:intron 45.0%
! GGAGAACTTTCCGTCCTTTT+GGG - chr6_1:31795756-31795775 Msa0882480:intron 45.0%
! GACAAATCCATCGAGCATTG+TGG + chr6_1:31795784-31795803 None:intergenic 45.0%
CAAACAGCATATCCAGGAAC+TGG - chr6_1:31796054-31796073 Msa0882480:intron 45.0%
ATATCCAGGAACTGGACCTT+TGG - chr6_1:31796062-31796081 Msa0882480:intron 45.0%
GGAGAATTTGGCTACTCACT+TGG - chr6_1:31796083-31796102 Msa0882480:intron 45.0%
GATCCATGGCACAACAACAT+TGG - chr6_1:31796108-31796127 Msa0882480:CDS 45.0%
TTGCCAATGTTGTTGTGCCA+TGG + chr6_1:31796114-31796133 None:intergenic 45.0%
GAGGGAGATATTTATTGCGG+TGG + chr6_1:31796147-31796166 None:intergenic 45.0%
CCATCAAGGTAAGGTGGTCT+AGG + chr6_1:31793687-31793706 None:intergenic 50.0%
CCTAGACCACCTTACCTTGA+TGG - chr6_1:31793684-31793703 Msa0882480:CDS 50.0%
GCTGAACCATCAAGGTAAGG+TGG + chr6_1:31793693-31793712 None:intergenic 50.0%
GGAGCTGAACCATCAAGGTA+AGG + chr6_1:31793696-31793715 None:intergenic 50.0%
! TACCTTGATGGTTCAGCTCC+AGG - chr6_1:31793696-31793715 Msa0882480:CDS 50.0%
! ACCTTGATGGTTCAGCTCCA+GGG - chr6_1:31793697-31793716 Msa0882480:CDS 50.0%
AGCTCCCCAAATATGAGGAG+AGG + chr6_1:31794257-31794276 None:intergenic 50.0%
GGTACTTCACCAAGACGTAG+AGG + chr6_1:31794403-31794422 None:intergenic 50.0%
ATCGGCCCATCAATGTCTGT+TGG - chr6_1:31794708-31794727 Msa0882480:CDS 50.0%
GTCTAAATCGGCCCATCTGA+TGG - chr6_1:31794792-31794811 Msa0882480:CDS 50.0%
! ATGCATGCAGCCAGGGATTT+TGG - chr6_1:31794978-31794997 Msa0882480:intron 50.0%
!! GTACCTGAGGCATTGGGATT+AGG - chr6_1:31795000-31795019 Msa0882480:intron 50.0%
TTGCCTAATCCCAATGCCTC+AGG + chr6_1:31795006-31795025 None:intergenic 50.0%
!! AGGCATTGGGATTAGGCAAC+TGG - chr6_1:31795007-31795026 Msa0882480:intron 50.0%
! GGCATTGGGATTAGGCAACT+GGG - chr6_1:31795008-31795027 Msa0882480:intron 50.0%
TGGAACAGGGTTTCCTAGGT+AGG + chr6_1:31795076-31795095 None:intergenic 50.0%
ACCTAGGAAACCCTGTTCCA+TGG - chr6_1:31795076-31795095 Msa0882480:intron 50.0%
CCTAGGAAACCCTGTTCCAT+GGG - chr6_1:31795077-31795096 Msa0882480:intron 50.0%
CTAGGAAACCCTGTTCCATG+GGG - chr6_1:31795078-31795097 Msa0882480:intron 50.0%
GGTTAACGCAGTGCAATGAG+TGG - chr6_1:31795401-31795420 Msa0882480:intron 50.0%
CATCTCATCTAAGCGCTCCT+GGG + chr6_1:31795658-31795677 None:intergenic 50.0%
AGCGCTTAGATGAGATGGCA+CGG - chr6_1:31795661-31795680 Msa0882480:intron 50.0%
! GGGAGAACTTTCCGTCCTTT+TGG - chr6_1:31795755-31795774 Msa0882480:intron 50.0%
CATTGTGGGACCCAAAAGGA+CGG + chr6_1:31795769-31795788 None:intergenic 50.0%
TTCTCCAAAGGTCCAGTTCC+TGG + chr6_1:31796069-31796088 None:intergenic 50.0%
CTACTCACTTGGCTGATCCA+TGG - chr6_1:31796094-31796113 Msa0882480:CDS 50.0%
CAAGGTAAGGTGGTCTAGGC+TGG + chr6_1:31793683-31793702 None:intergenic 55.0%
ACCCTGGAGCTGAACCATCA+AGG + chr6_1:31793701-31793720 None:intergenic 55.0%
TCATGCAGTCGGCCCATCAA+AGG + chr6_1:31794202-31794221 None:intergenic 55.0%
ATGGGCCGACTGCATGAATG+CGG - chr6_1:31794205-31794224 Msa0882480:intron 55.0%
!! GCCAGGGATTTTGGTACCTG+AGG - chr6_1:31794987-31795006 Msa0882480:intron 55.0%
GCCTCAGGTACCAAAATCCC+TGG + chr6_1:31794991-31795010 None:intergenic 55.0%
CAAGAATGGGCAGCACTTCC+AGG - chr6_1:31795039-31795058 Msa0882480:intron 55.0%
AGGTAGGTTGCTTGTCCTCC+TGG + chr6_1:31795060-31795079 None:intergenic 55.0%
GGAGGACAAGCAACCTACCT+AGG - chr6_1:31795060-31795079 Msa0882480:intron 55.0%
CCCATGGAACAGGGTTTCCT+AGG + chr6_1:31795080-31795099 None:intergenic 55.0%
GTAGGGTTCCCCATGGAACA+GGG + chr6_1:31795089-31795108 None:intergenic 55.0%
! GGGAACCCTACCCACCATTT+TGG - chr6_1:31795098-31795117 Msa0882480:intron 55.0%
CCATCTCATCTAAGCGCTCC+TGG + chr6_1:31795659-31795678 None:intergenic 55.0%
!! CCAGGAGCGCTTAGATGAGA+TGG - chr6_1:31795656-31795675 Msa0882480:intron 55.0%
GCGCTTAGATGAGATGGCAC+GGG - chr6_1:31795662-31795681 Msa0882480:intron 55.0%
! CGAGCATTGTGGGACCCAAA+AGG + chr6_1:31795773-31795792 None:intergenic 55.0%
TTGGGTCCCACAATGCTCGA+TGG - chr6_1:31795774-31795793 Msa0882480:intron 55.0%
TTTGTCTCCGCAGTTGCGTG+CGG - chr6_1:31795798-31795817 Msa0882480:intron 55.0%
! TAAGGTGGTCTAGGCTGGCC+AGG + chr6_1:31793678-31793697 None:intergenic 60.0%
GTCGGCCCATCAAAGGCTGT+TGG + chr6_1:31794195-31794214 None:intergenic 60.0%
GAATGGGCAGCACTTCCAGG+AGG - chr6_1:31795042-31795061 Msa0882480:intron 60.0%
GGTAGGGTTCCCCATGGAAC+AGG + chr6_1:31795090-31795109 None:intergenic 60.0%
!! ATGGTGGGTAGGGTTCCCCA+TGG + chr6_1:31795096-31795115 None:intergenic 60.0%
GTAACCTCCGCACGCAACTG+CGG + chr6_1:31795808-31795827 None:intergenic 60.0%
GTCTCCGCAGTTGCGTGCGG+AGG - chr6_1:31795801-31795820 Msa0882480:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 31793382 31796421 31793382 ID=Msa0882480;Name=Msa0882480
chr6_1 mRNA 31793382 31796421 31793382 ID=Msa0882480-mRNA-1;Parent=Msa0882480;Name=Msa0882480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=152|1|1|1|1|1|4|266|239
chr6_1 exon 31793382 31793790 31793382 ID=Msa0882480-mRNA-1:exon:7881;Parent=Msa0882480-mRNA-1
chr6_1 exon 31794527 31794815 31794527 ID=Msa0882480-mRNA-1:exon:7880;Parent=Msa0882480-mRNA-1
chr6_1 exon 31795317 31795419 31795317 ID=Msa0882480-mRNA-1:exon:7879;Parent=Msa0882480-mRNA-1
chr6_1 exon 31796085 31796421 31796085 ID=Msa0882480-mRNA-1:exon:7878;Parent=Msa0882480-mRNA-1
chr6_1 five_prime_UTR 31796270 31796421 31796270 ID=Msa0882480-mRNA-1:five_prime_utr;Parent=Msa0882480-mRNA-1
chr6_1 CDS 31796085 31796269 31796085 ID=Msa0882480-mRNA-1:cds;Parent=Msa0882480-mRNA-1
chr6_1 CDS 31795317 31795419 31795317 ID=Msa0882480-mRNA-1:cds;Parent=Msa0882480-mRNA-1
chr6_1 CDS 31794527 31794815 31794527 ID=Msa0882480-mRNA-1:cds;Parent=Msa0882480-mRNA-1
chr6_1 CDS 31793648 31793790 31793648 ID=Msa0882480-mRNA-1:cds;Parent=Msa0882480-mRNA-1
chr6_1 three_prime_UTR 31793382 31793647 31793382 ID=Msa0882480-mRNA-1:three_prime_utr;Parent=Msa0882480-mRNA-1
Gene Sequence

>Msa0882480

ATGGCTTGTAACACATTGATGAGTTCTGCTATCTCAGCATTTCCATCACTTCTTTCTTCCTCAAAATCAAGATTTTCAACTTCACTTCCACTTCCTTGCACAAATGCTTCTTCTAGATTCACCATGACTTCTGATTGGATGCCTGGCCAGCCTAGACCACCTTACCTTGATGGTTCAGCTCCAGGTGACTTTGGATTTGATCCTCTACGTCTTGGTGAAGTACCTGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCATTGGGATTAGGCAACTGGGTGAAAGCACAAGAATGGGCAGCACTTCCAGGAGGACAAGCAACCTACCTAGGAAACCCTGTTCCATGGGGAACCCTACCCACCATTTTGGTCATTGAATTCCTTTCTATTGCTTTTGTTGAGCACCAAAGGAGTATGGAGAAAGACCCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTTGGAATCTGTGTTCAACAAACAGCATATCCAGGAACTGGACCTTTGGAGAATTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGCAATGTCCTTATTCCACCGCAATAA

Protein sequence

>Msa0882480

MACNTLMSSAISAFPSLLSSSKSRFSTSLPLPCTNASSRFTMTSDWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGNVLIPPQ*