AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907380 MtrunA17_Chr6g0455901 93.868 424 16 3 1 415 1 423 0.0 798
Msa0907380 MtrunA17_Chr4g0049421 40.594 404 207 9 16 406 7 390 1.31e-104 315
Msa0907380 MtrunA17_Chr7g0269991 30.532 357 203 13 71 408 137 467 1.24e-46 166
Msa0907380 MtrunA17_Chr6g0456681 30.211 427 232 14 21 415 23 415 3.55e-41 150
Msa0907380 MtrunA17_Chr4g0071391 29.867 375 189 16 71 408 109 446 1.37e-39 147
Msa0907380 MtrunA17_Chr1g0213281 29.688 384 210 18 61 415 170 522 1.33e-38 145
Msa0907380 MtrunA17_Chr4g0068111 28.211 436 249 18 8 411 58 461 1.80e-38 144
Msa0907380 MtrunA17_Chr1g0175671 30.163 368 199 17 71 408 170 509 1.15e-37 143
Msa0907380 MtrunA17_Chr6g0456691 26.157 432 241 13 20 415 37 426 1.83e-37 140
Msa0907380 MtrunA17_Chr7g0259711 28.142 366 215 14 69 408 89 432 3.48e-37 140
Msa0907380 MtrunA17_Chr7g0258851 29.223 373 208 15 71 414 248 593 7.07e-37 142
Msa0907380 MtrunA17_Chr5g0413271 27.397 365 215 14 69 411 143 479 1.77e-36 139
Msa0907380 MtrunA17_Chr3g0140371 30.303 363 208 16 69 406 16 358 2.83e-36 136
Msa0907380 MtrunA17_Chr4g0041011 29.557 406 226 15 16 409 7 364 1.91e-34 131
Msa0907380 MtrunA17_Chr8g0368461 27.202 386 216 15 62 408 169 528 2.36e-34 134
Msa0907380 MtrunA17_Chr5g0414091 27.714 433 260 19 12 408 16 431 4.75e-33 129
Msa0907380 MtrunA17_Chr8g0384421 29.894 378 195 18 67 408 129 472 2.11e-32 127
Msa0907380 MtrunA17_Chr8g0347321 27.570 428 251 19 19 408 33 439 3.30e-32 126
Msa0907380 MtrunA17_Chr3g0091031 28.000 350 204 14 69 404 29 344 5.73e-32 124
Msa0907380 MtrunA17_Chr2g0287901 26.997 363 222 15 65 404 91 433 6.12e-32 126
Msa0907380 MtrunA17_Chr8g0391481 28.346 381 217 14 67 415 23 379 1.49e-31 124
Msa0907380 MtrunA17_Chr2g0325481 30.925 346 194 14 71 404 50 362 2.41e-31 122
Msa0907380 MtrunA17_Chr3g0085071 28.205 351 202 15 69 404 44 359 6.57e-31 121
Msa0907380 MtrunA17_Chr5g0414051 27.404 416 230 18 31 408 39 420 1.18e-30 122
Msa0907380 MtrunA17_Chr5g0414041 27.465 426 253 14 17 406 26 431 1.28e-30 122
Msa0907380 MtrunA17_Chr3g0085081 27.714 350 205 14 69 404 29 344 2.53e-30 119
Msa0907380 MtrunA17_Chr2g0283851 27.198 364 205 14 76 405 60 397 3.46e-30 120
Msa0907380 MtrunA17_Chr5g0430371 26.862 376 213 15 62 404 49 395 3.72e-30 120
Msa0907380 MtrunA17_Chr4g0006991 28.689 366 213 15 69 408 84 427 5.57e-30 120
Msa0907380 MtrunA17_Chr5g0414061 27.882 373 208 16 68 406 91 436 8.15e-30 120
Msa0907380 MtrunA17_Chr2g0283581 30.337 356 197 17 69 409 40 359 1.36e-29 117
Msa0907380 MtrunA17_Chr1g0171171 27.696 408 232 17 20 404 4 371 3.06e-29 117
Msa0907380 MtrunA17_Chr8g0387921 25.688 436 269 16 4 408 8 419 7.39e-29 117
Msa0907380 MtrunA17_Chr3g0114101 25.901 444 261 17 7 408 13 430 2.00e-28 115
Msa0907380 MtrunA17_Chr4g0005481 27.297 370 210 16 69 408 106 446 2.02e-28 116
Msa0907380 MtrunA17_Chr7g0226991 27.513 378 204 17 70 408 56 402 2.84e-28 115
Msa0907380 MtrunA17_Chr1g0188191 25.134 374 230 13 63 406 226 579 5.51e-28 116
Msa0907380 MtrunA17_Chr5g0413851 29.032 372 218 15 51 408 20 359 1.07e-27 112
Msa0907380 MtrunA17_Chr5g0437601 25.296 423 262 15 18 408 24 424 1.12e-27 113
Msa0907380 MtrunA17_Chr4g0070341 25.781 384 233 15 52 408 113 471 1.25e-27 114
Msa0907380 MtrunA17_Chr2g0314801 29.060 351 198 16 71 404 33 349 1.65e-27 112
Msa0907380 MtrunA17_Chr8g0384151 28.421 380 217 20 53 408 68 416 1.70e-27 113
Msa0907380 MtrunA17_Chr3g0097891 28.409 352 206 15 71 408 31 350 2.67e-27 111
Msa0907380 MtrunA17_Chr6g0476041 23.592 373 235 12 64 406 160 512 5.54e-27 112
Msa0907380 MtrunA17_Chr7g0242701 27.198 364 221 14 69 408 84 427 8.61e-27 111
Msa0907380 MtrunA17_Chr6g0451321 25.833 360 239 10 65 408 110 457 1.04e-26 111
Msa0907380 MtrunA17_Chr4g0005491 29.521 376 197 17 71 408 62 407 1.83e-26 110
Msa0907380 MtrunA17_Chr8g0360521 24.419 430 261 18 13 408 10 409 1.83e-26 110
Msa0907380 MtrunA17_Chr7g0243301 26.869 428 245 19 12 408 19 409 1.92e-25 107
Msa0907380 MtrunA17_Chr3g0126021 25.128 390 241 16 39 408 101 459 2.21e-25 107
Msa0907380 MtrunA17_Chr3g0105301 24.877 406 247 14 29 408 3 376 3.19e-25 105
Msa0907380 MtrunA17_Chr2g0314791 25.915 355 208 16 71 408 29 345 1.70e-24 103
Msa0907380 MtrunA17_Chr3g0113671 25.538 372 227 14 68 411 103 452 1.79e-24 104
Msa0907380 MtrunA17_Chr7g0221281 27.778 252 139 7 178 408 7 236 5.49e-24 100
Msa0907380 MtrunA17_Chr1g0210771 26.611 357 202 14 71 404 59 378 2.16e-23 100
Msa0907380 MtrunA17_Chr4g0045941 26.287 369 224 14 50 404 12 346 4.30e-23 99.8
Msa0907380 MtrunA17_Chr5g0437291 24.865 370 227 15 71 410 165 513 5.33e-23 100
Msa0907380 MtrunA17_Chr4g0045951 27.874 348 207 16 69 404 43 358 5.72e-22 96.7
Msa0907380 MtrunA17_Chr5g0414081 30.144 209 109 9 226 408 2 199 3.08e-19 85.5
Msa0907380 MtrunA17_Chr1g0178081 30.208 192 107 9 69 244 53 233 1.53e-15 77.4
Msa0907380 MtrunA17_Chr1g0178081 40.367 109 55 5 310 413 243 346 1.38e-12 68.6
Msa0907380 MtrunA17_Chr1g0209921 30.435 184 100 6 71 244 44 209 8.04e-15 74.3
Msa0907380 MtrunA17_Chr7g0221291 28.767 146 94 4 17 153 23 167 5.74e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907380 AT2G14530.1 64.975 394 123 6 29 412 22 410 0.0 521
Msa0907380 AT5G64470.2 43.343 353 178 9 71 408 55 400 1.13e-96 295
Msa0907380 AT5G64470.3 43.343 353 172 10 71 408 55 394 1.41e-93 287
Msa0907380 AT5G64470.4 43.284 268 136 8 71 329 55 315 5.98e-68 218
Msa0907380 AT5G64470.1 43.071 267 136 8 71 328 55 314 2.67e-67 217
Msa0907380 AT3G62390.1 28.093 388 223 14 51 408 110 471 2.70e-44 160
Msa0907380 AT3G12060.1 30.790 367 200 13 70 408 195 535 1.87e-43 160
Msa0907380 AT3G11570.1 31.806 371 208 16 69 415 77 426 9.39e-41 150
Msa0907380 AT3G02440.2 30.159 378 188 14 71 408 135 476 1.29e-40 150
Msa0907380 AT3G02440.1 30.159 378 188 14 71 408 127 468 1.37e-40 150
Msa0907380 AT5G19160.1 28.199 422 247 14 19 404 39 440 4.06e-40 149
Msa0907380 AT5G20590.1 29.863 365 203 18 71 408 141 479 7.11e-40 149
Msa0907380 AT5G06230.2 30.728 371 211 16 71 415 21 371 1.47e-38 143
Msa0907380 AT5G06230.1 30.728 371 211 16 71 415 62 412 2.42e-38 143
Msa0907380 AT5G06700.1 29.508 366 204 13 71 408 255 594 1.21e-37 144
Msa0907380 AT5G15900.1 28.193 415 243 11 17 408 27 409 5.45e-37 140
Msa0907380 AT1G60790.1 29.268 369 210 13 68 408 187 532 5.81e-37 141
Msa0907380 AT5G15900.2 28.193 415 243 11 17 408 46 428 7.56e-37 140
Msa0907380 AT3G28150.1 26.611 357 235 9 71 412 70 414 4.51e-35 134
Msa0907380 AT1G01430.1 27.750 400 253 13 39 414 67 454 7.50e-35 134
Msa0907380 AT3G06080.2 27.855 359 214 12 71 404 103 441 1.02e-34 134
Msa0907380 AT3G11030.1 27.671 365 219 13 69 408 104 448 8.85e-34 131
Msa0907380 AT5G15890.1 25.377 398 247 11 35 410 155 524 1.14e-31 126
Msa0907380 AT1G70230.1 26.257 358 219 9 71 408 79 411 1.96e-31 124
Msa0907380 AT5G49340.1 26.703 367 217 13 70 408 99 441 2.90e-31 124
Msa0907380 AT1G48880.1 28.375 363 197 17 71 408 115 439 1.30e-30 122
Msa0907380 AT2G40320.1 26.498 434 256 18 11 408 16 422 5.10e-30 120
Msa0907380 AT4G23790.1 26.796 362 228 12 69 406 77 425 6.69e-30 120
Msa0907380 AT4G01080.1 26.478 423 252 13 8 406 41 428 5.01e-29 118
Msa0907380 AT5G64020.1 27.249 378 209 15 71 408 57 408 5.36e-29 117
Msa0907380 AT2G31110.2 27.930 401 229 15 22 410 12 364 7.49e-29 116
Msa0907380 AT4G11090.1 25.783 415 263 16 21 406 25 423 1.49e-28 116
Msa0907380 AT2G42570.1 28.232 379 225 17 45 410 22 366 1.69e-28 115
Msa0907380 AT1G29050.1 26.741 359 219 12 63 409 53 379 2.74e-28 115
Msa0907380 AT5G01360.2 28.108 370 211 17 69 408 34 378 2.85e-28 115
Msa0907380 AT2G34070.1 26.389 360 222 12 62 409 56 384 4.93e-28 114
Msa0907380 AT5G01360.1 28.108 370 211 17 69 408 90 434 5.92e-28 115
Msa0907380 AT1G78710.1 26.420 352 216 15 71 410 38 358 6.42e-28 113
Msa0907380 AT2G38320.1 27.548 363 221 14 71 408 59 404 5.95e-27 112
Msa0907380 AT5G20680.6 26.975 367 206 14 70 404 117 453 6.68e-27 112
Msa0907380 AT5G20680.4 27.128 376 198 17 68 404 209 547 7.29e-27 113
Msa0907380 AT5G20680.1 27.128 376 198 17 68 404 209 547 7.29e-27 113
Msa0907380 AT5G20680.3 27.128 376 198 17 68 404 209 547 7.29e-27 113
Msa0907380 AT5G20680.5 27.128 376 198 17 68 404 209 547 7.29e-27 113
Msa0907380 AT5G20680.2 27.128 376 198 17 68 404 191 529 7.48e-27 112
Msa0907380 AT2G30900.1 25.063 395 233 15 30 408 18 365 1.24e-26 110
Msa0907380 AT2G40150.1 26.146 371 228 15 69 410 69 422 1.41e-26 110
Msa0907380 AT5G01620.2 27.371 369 208 18 71 408 110 449 2.28e-26 110
Msa0907380 AT5G01620.1 27.371 369 208 18 71 408 110 449 2.28e-26 110
Msa0907380 AT5G01620.3 27.371 369 208 18 71 408 118 457 2.89e-26 110
Msa0907380 AT1G73140.1 24.938 401 245 17 37 408 32 405 3.20e-26 109
Msa0907380 AT4G25360.1 24.607 382 212 14 71 408 175 524 2.12e-25 108
Msa0907380 AT4G25360.2 24.607 382 212 14 71 408 175 524 2.12e-25 108
Msa0907380 AT2G40160.1 26.301 365 216 15 71 404 77 419 4.18e-25 106
Msa0907380 AT2G30010.2 28.117 377 202 20 68 408 96 439 4.64e-25 107
Msa0907380 AT2G30010.1 28.117 377 202 20 68 408 53 396 5.05e-25 106
Msa0907380 AT2G40160.2 26.301 365 216 15 71 404 77 419 6.62e-25 106
Msa0907380 AT3G54260.1 26.536 358 201 13 71 404 51 370 2.52e-24 103
Msa0907380 AT5G51640.1 23.472 409 243 14 37 406 109 486 3.95e-24 104
Msa0907380 AT2G34070.2 28.417 278 166 9 136 409 2 250 6.91e-24 100
Msa0907380 AT3G14850.2 28.732 355 206 17 69 408 32 354 9.14e-24 102
Msa0907380 AT2G38320.2 27.673 318 190 12 115 408 20 321 9.92e-24 101
Msa0907380 AT3G62390.2 25.478 314 194 11 51 341 110 406 1.07e-23 102
Msa0907380 AT3G55990.1 25.745 369 226 15 69 410 138 485 3.68e-23 101
Msa0907380 AT5G19160.2 26.603 312 191 11 19 307 39 335 3.08e-22 97.4
Msa0907380 AT5G58600.1 23.888 427 261 14 17 408 3 400 1.38e-21 96.3
Msa0907380 AT3G14850.1 29.643 280 160 13 136 408 2 251 9.49e-20 88.6
Msa0907380 AT5G20590.2 27.559 254 150 13 71 307 141 377 1.17e-18 87.4
Msa0907380 AT5G06230.3 28.618 304 164 13 28 310 36 307 1.64e-18 86.3
Msa0907380 AT2G37720.1 24.011 379 210 13 70 408 142 482 4.83e-17 83.2
Msa0907380 AT2G31110.1 30.851 188 113 7 227 410 42 216 8.53e-17 79.3
Msa0907380 AT3G06080.1 25.794 252 157 9 71 307 103 339 3.68e-16 79.7
Msa0907380 AT2G30900.2 26.786 224 121 7 30 244 18 207 1.15e-12 68.6
Msa0907380 AT5G58600.2 24.696 247 148 8 17 244 3 230 6.72e-11 63.2
Msa0907380 AT2G31110.3 27.615 239 130 8 22 252 12 215 9.46e-11 62.8

Find 104 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGAACTTCTTGTTTAAT+TGG 0.166057 6_2:-5965143 Msa0907380:three_prime_UTR
AAGAAGAAGGGTTGCGGATT+TGG 0.204359 6_2:+5969892 None:intergenic
TCTCGACTAGTTAACATAAA+TGG 0.253206 6_2:+5965024 None:intergenic
AGAAGAAGGGTTGCGGATTT+GGG 0.261296 6_2:+5969893 None:intergenic
GTGATTACTCTAATGGAAAA+TGG 0.273489 6_2:-5969785 Msa0907380:CDS
CCTACCTGTTGTGCCGATAA+AGG 0.295989 6_2:+5965682 None:intergenic
GACGGTTGTTGTTGTTGATA+TGG 0.296676 6_2:+5969817 None:intergenic
TTTGAATCCAAGTGATTCTA+AGG 0.303479 6_2:+5968036 None:intergenic
CACCTCGATAAGGCTCTTAA+AGG 0.309749 6_2:-5965403 Msa0907380:CDS
GATGTTCAAAACAATGAAAT+TGG 0.310459 6_2:+5965378 None:intergenic
GTAGAACTTCTTGTTTAATT+GGG 0.323825 6_2:-5965142 Msa0907380:three_prime_UTR
GTCCCCTCCCTCAAAATGCC+TGG 0.339420 6_2:+5965738 None:intergenic
GATTCATGTGATTACTCTAA+TGG 0.350668 6_2:-5969792 Msa0907380:CDS
GTACGTAACGGAGGGATTAC+TGG 0.351146 6_2:+5967352 None:intergenic
TAAGGGGTGGAATTGTATAA+AGG 0.352991 6_2:-5969709 Msa0907380:CDS
TAGAGTTGACGTTGATGTTC+CGG 0.357918 6_2:-5968005 Msa0907380:CDS
TTGAGCAGTTTGATGTTGTT+AGG 0.362743 6_2:-5969623 Msa0907380:intron
TCACTTACTTGAGTGAGTTC+AGG 0.368499 6_2:-5965357 Msa0907380:CDS
GATTGAAGAGAAGGCTTTGA+TGG 0.374854 6_2:+5969848 None:intergenic
ACTAATCTTCTCGCACGTTA+TGG 0.376618 6_2:-5968303 Msa0907380:CDS
TCAAAGGGATCGACCTTTAT+CGG 0.379286 6_2:-5965695 Msa0907380:CDS
GGCTTTGATGGAAGAGGAGG+AGG 0.406969 6_2:+5969860 None:intergenic
TACAGATCAAGGCCTGGATA+TGG 0.409238 6_2:-5967332 Msa0907380:CDS
AGAGAAGGCTTTGATGGAAG+AGG 0.412920 6_2:+5969854 None:intergenic
GATGCTCATCCTGCTTCTGC+CGG 0.416324 6_2:-5965331 Msa0907380:CDS
CTGATGGACAAGTTAAGAAA+TGG 0.417898 6_2:-5968392 Msa0907380:CDS
AAGGGTTGCGGATTTGGGAG+AGG 0.419140 6_2:+5969898 None:intergenic
TTGTTGGGGACTCACTCAAT+AGG 0.420202 6_2:-5968458 Msa0907380:CDS
TGCATGCACTGGTGCTTACC+TGG 0.422012 6_2:-5965289 Msa0907380:CDS
CGTGCTCTTTCCTCTACATA+TGG 0.430260 6_2:+5965796 None:intergenic
AAGGGGTGGAATTGTATAAA+GGG 0.430265 6_2:-5969708 Msa0907380:CDS
GAGGGAGGGGACTGGGATCA+AGG 0.449857 6_2:-5965727 Msa0907380:CDS
GTTTGTCCCGTTATTCTTCA+CGG 0.451586 6_2:+5965450 None:intergenic
CACTTACTTGAGTGAGTTCA+GGG 0.459642 6_2:-5965356 Msa0907380:CDS
TCGACCTTTATCGGCACAAC+AGG 0.459948 6_2:-5965686 Msa0907380:intron
TTGTTAAGTGGAGGTGGAAA+GGG 0.470809 6_2:-5969662 Msa0907380:CDS
AAGTGGAGGTGGAAAGGGAA+GGG 0.480997 6_2:-5969657 Msa0907380:CDS
TTCCATGTATCTGTAATTCC+AGG 0.483599 6_2:+5965271 None:intergenic
TGTTGTTGATATGGAAATTG+TGG 0.483727 6_2:+5969826 None:intergenic
GAAATTGTGGATTGAAGAGA+AGG 0.487811 6_2:+5969839 None:intergenic
ATCAAGGTGGTTCCTGTCAA+AGG 0.488035 6_2:-5965711 Msa0907380:CDS
TGGGTGTGTTTCAGTAATGC+AGG 0.489260 6_2:-5968483 Msa0907380:intron
GAGGATGAAGAAGAAGAAGA+AGG 0.502936 6_2:+5969879 None:intergenic
TTGATGTTCCGGATAATACA+TGG 0.503138 6_2:-5967994 Msa0907380:CDS
AGTAAGATTGTAAGTCAGAA+AGG 0.503489 6_2:+5968341 None:intergenic
GCTTGTGCCCATGTATTATC+CGG 0.504901 6_2:+5967986 None:intergenic
GATTGAAGTGAATGTGAGAA+GGG 0.505473 6_2:+5969929 None:intergenic
CCTCCGTTACGTACAGATCA+AGG 0.506654 6_2:-5967343 Msa0907380:CDS
AGTGGAGGTGGAAAGGGAAG+GGG 0.507258 6_2:-5969656 Msa0907380:CDS
GAAGGCTTTGATGGAAGAGG+AGG 0.507436 6_2:+5969857 None:intergenic
AGACCTGCTGGCGCTGACCG+TGG 0.509219 6_2:-5968369 Msa0907380:CDS
GGTCAATGAACACCTCGATA+AGG 0.515279 6_2:-5965413 Msa0907380:CDS
AATCCACGGTCAGCGCCAGC+AGG 0.521757 6_2:+5968366 None:intergenic
TAAGGCACCGCCATTCTCAC+TGG 0.523663 6_2:+5968054 None:intergenic
AGATGGTCAGCCAGTGAGAA+TGG 0.528253 6_2:-5968064 Msa0907380:CDS
TCCCCTCCCTCAAAATGCCT+GGG 0.530593 6_2:+5965739 None:intergenic
GGCGGTGCCTTAGAATCACT+TGG 0.534975 6_2:-5968043 Msa0907380:CDS
TCAAGGTGGTTCCTGTCAAA+GGG 0.541458 6_2:-5965710 Msa0907380:CDS
TAAGTGGAGGTGGAAAGGGA+AGG 0.542972 6_2:-5969658 Msa0907380:CDS
AAAAGCATAGGTGACTTCAC+AGG 0.543611 6_2:+5967391 None:intergenic
GGTTGCGGATTTGGGAGAGG+AGG 0.543963 6_2:+5969901 None:intergenic
TACCTGGAATTACAGATACA+TGG 0.544901 6_2:-5965273 Msa0907380:CDS
GCGATACGATGAAACGTGTA+AGG 0.549576 6_2:-5969739 Msa0907380:CDS
GTTAAGAAATGGAGACCTGC+TGG 0.551358 6_2:-5968381 Msa0907380:CDS
AAACATAGGAGTTGATAAAG+TGG 0.554188 6_2:-5965217 Msa0907380:exon
CTAAGGAGCAGTATCTCTGA+TGG 0.558661 6_2:-5968408 Msa0907380:CDS
GTGATGTTGTTAAGTGGAGG+TGG 0.559993 6_2:-5969668 Msa0907380:CDS
AGATTGAAGTGAATGTGAGA+AGG 0.563506 6_2:+5969928 None:intergenic
ATGTGAGAAGGGAAAGAAGT+GGG 0.565232 6_2:+5969940 None:intergenic
GATTCATATTAACAGGTGGT+GGG 0.566250 6_2:-5967431 Msa0907380:intron
GAATCACTTGGATTCAAAGA+GGG 0.568230 6_2:-5968031 Msa0907380:CDS
TAAAGGTCGATCCCTTTGAC+AGG 0.572523 6_2:+5965699 None:intergenic
AACACGATGATTGCATGCAC+TGG 0.573272 6_2:-5965300 Msa0907380:CDS
TGTGCTCTAAAACCATATCC+AGG 0.574042 6_2:+5967320 None:intergenic
GAAAGGGAAGGGGTGTGATG+CGG 0.578584 6_2:-5969646 Msa0907380:CDS
ATAAAGGGGAATAAGAAGAA+TGG 0.580656 6_2:-5969693 Msa0907380:CDS
GTTGTTAAGTGGAGGTGGAA+AGG 0.580773 6_2:-5969663 Msa0907380:CDS
GGAGGGGACTGGGATCAAGG+TGG 0.583103 6_2:-5965724 Msa0907380:CDS
GCTCATCCTGCTTCTGCCGG+AGG 0.587446 6_2:-5965328 Msa0907380:CDS
TTCACAGATACCATATGTAG+AGG 0.589975 6_2:-5965806 Msa0907380:intron
GACAAACGTAGAGGTTCGAT+TGG 0.590074 6_2:-5965434 Msa0907380:CDS
AGAATCACTTGGATTCAAAG+AGG 0.591310 6_2:-5968032 Msa0907380:CDS
GTTACGTACAGATCAAGGCC+TGG 0.605882 6_2:-5967338 Msa0907380:CDS
ATGGTGGTGATGTTGTTAAG+TGG 0.615027 6_2:-5969674 Msa0907380:CDS
AGGGGTGGAATTGTATAAAG+GGG 0.619984 6_2:-5969707 Msa0907380:CDS
AAAGCATAGGTGACTTCACA+GGG 0.621400 6_2:+5967392 None:intergenic
AAGGGGAATAAGAAGAATGG+TGG 0.625696 6_2:-5969690 Msa0907380:CDS
ATCCTTTAAGAGCCTTATCG+AGG 0.628660 6_2:+5965401 None:intergenic
CTTGATCTGTACGTAACGGA+GGG 0.632330 6_2:+5967344 None:intergenic
GTAGAGGAAAGAGCACGACC+AGG 0.634862 6_2:-5965790 Msa0907380:CDS
ATCTAAATAGTATCAAACAT+AGG 0.635587 6_2:-5965231 Msa0907380:CDS
CCTTGATCTGTACGTAACGG+AGG 0.637286 6_2:+5967343 None:intergenic
CCCTTCTTGAAGAAAAGCAT+AGG 0.638572 6_2:+5967379 None:intergenic
AGGCCTTGATCTGTACGTAA+CGG 0.643771 6_2:+5967340 None:intergenic
AGTTAACATAAATGGAACAA+AGG 0.644432 6_2:+5965032 None:intergenic
ATCTTCTCGCACGTTATGGT+AGG 0.652203 6_2:-5968299 Msa0907380:intron
AATGTGAGAAGGGAAAGAAG+TGG 0.655671 6_2:+5969939 None:intergenic
TGATGTTCCGGATAATACAT+GGG 0.660039 6_2:-5967993 Msa0907380:CDS
AGTAATCACATGAATCGTGA+CGG 0.665726 6_2:+5969799 None:intergenic
AAGTCAGAAAGGTAAATCCA+CGG 0.667212 6_2:+5968352 None:intergenic
GAATAACGGGACAAACGTAG+AGG 0.685757 6_2:-5965443 Msa0907380:CDS
GTGGTGATGTTGTTAAGTGG+AGG 0.700430 6_2:-5969671 Msa0907380:CDS
AACGTGCGAGAAGATTAGTA+CGG 0.721240 6_2:+5968307 None:intergenic
TGGTCAGCCAGTGAGAATGG+CGG 0.727392 6_2:-5968061 Msa0907380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGGTATATTTAATAAT+GGG - chr6_2:5966526-5966545 Msa0907380:intron 10.0%
!!! ATTTTAATATACAGTTATTT+AGG - chr6_2:5968473-5968492 Msa0907380:intron 10.0%
!!! TATTATCAAATTTATGTTTT+AGG + chr6_2:5969103-5969122 None:intergenic 10.0%
!!! ATTTTGAATGATTTGATTTA+TGG - chr6_2:5965539-5965558 Msa0907380:intron 15.0%
!!! CTTTTTGGTATATTTAATAA+TGG - chr6_2:5966525-5966544 Msa0907380:intron 15.0%
!!! ATATTCTAATTTTTAACACT+GGG - chr6_2:5967079-5967098 Msa0907380:intron 15.0%
!!! AGAATTTAATTTGGTTAATA+TGG - chr6_2:5967566-5967585 Msa0907380:intron 15.0%
!!! ATGTATTTTCAATTTTGAAT+TGG + chr6_2:5968005-5968024 None:intergenic 15.0%
!! CTTACATATCATCAAAAAAT+TGG + chr6_2:5965740-5965759 None:intergenic 20.0%
!! AATGTAAAATGGTTTATCTT+TGG - chr6_2:5965866-5965885 Msa0907380:intron 20.0%
!!! TTTTTTTTTATTGATGACGA+AGG + chr6_2:5966189-5966208 None:intergenic 20.0%
!! TTATTCTTATGATTAATGTG+AGG - chr6_2:5966782-5966801 Msa0907380:intron 20.0%
!! TATTCTTATGATTAATGTGA+GGG - chr6_2:5966783-5966802 Msa0907380:intron 20.0%
!! TAGTGGAGAAATTTATAAAA+TGG + chr6_2:5966866-5966885 None:intergenic 20.0%
!! TGTTAAAAATTAGAATATCG+TGG + chr6_2:5967077-5967096 None:intergenic 20.0%
!!! GATATTCTAATTTTTAACAC+TGG - chr6_2:5967078-5967097 Msa0907380:intron 20.0%
!! ATGTTGGAAATTACAAATAA+TGG - chr6_2:5967184-5967203 Msa0907380:intron 20.0%
!! TGTTGGAAATTACAAATAAT+GGG - chr6_2:5967185-5967204 Msa0907380:intron 20.0%
!!! TGAATTTTGATTGTCATTAT+AGG - chr6_2:5967269-5967288 Msa0907380:intron 20.0%
!! TAATAAATCAGAACAATCAA+GGG + chr6_2:5967329-5967348 None:intergenic 20.0%
!! TACAAACATTAACTTAGAAT+AGG + chr6_2:5967510-5967529 None:intergenic 20.0%
!! TTTACCAGAAGAATTTAATT+TGG - chr6_2:5967557-5967576 Msa0907380:intron 20.0%
!! TTAACCAAATTAAATTCTTC+TGG + chr6_2:5967564-5967583 None:intergenic 20.0%
!!! TTTTCAATTTTGAATTGGTT+AGG + chr6_2:5968000-5968019 None:intergenic 20.0%
!!! AGATTTTCAGTATTTTTCAA+GGG + chr6_2:5968097-5968116 None:intergenic 20.0%
!! TTAATAGCTTCATTAAAAGA+GGG - chr6_2:5968355-5968374 Msa0907380:CDS 20.0%
!! CTTGTTTATTGAATAATGTT+AGG - chr6_2:5968408-5968427 Msa0907380:CDS 20.0%
!! GAATTCAGAATTATTCAATT+AGG - chr6_2:5968647-5968666 Msa0907380:intron 20.0%
!!! ATCTATAGATGTTATTTGAT+AGG + chr6_2:5968816-5968835 None:intergenic 20.0%
!! TCTATTTGTATCATATAAAG+TGG + chr6_2:5968841-5968860 None:intergenic 20.0%
!! ACTTTATATGATACAAATAG+AGG - chr6_2:5968840-5968859 Msa0907380:intron 20.0%
!! AATTAGTTGTAATTTCATAG+TGG + chr6_2:5969138-5969157 None:intergenic 20.0%
!! AAATTACAACTAATTGAAGT+AGG - chr6_2:5969143-5969162 Msa0907380:intron 20.0%
!! ATTTAGCAACAAAATAAACA+GGG + chr6_2:5969502-5969521 None:intergenic 20.0%
!! AATTTAGCAACAAAATAAAC+AGG + chr6_2:5969503-5969522 None:intergenic 20.0%
!!! AAAAGTTTTTCAACCTAAAA+GGG + chr6_2:5969556-5969575 None:intergenic 20.0%
!! ATCTAAATAGTATCAAACAT+AGG - chr6_2:5969797-5969816 Msa0907380:CDS 20.0%
!! TAGGTGTAACAAAAATATAT+AGG - chr6_2:5969932-5969951 Msa0907380:CDS 20.0%
! AGGCTTAGTAAAATTGATTA+TGG - chr6_2:5965836-5965855 Msa0907380:intron 25.0%
! CATGTTAGAATCAATTATGA+AGG - chr6_2:5965969-5965988 Msa0907380:intron 25.0%
! TTTAAACTGAACTGTAAGTT+CGG + chr6_2:5966005-5966024 None:intergenic 25.0%
! TTGAAGTGTAATTAGACTTT+CGG - chr6_2:5966086-5966105 Msa0907380:intron 25.0%
!! AACTGACTTTGTTCAATTTA+AGG - chr6_2:5966301-5966320 Msa0907380:intron 25.0%
!! ACTGACTTTGTTCAATTTAA+GGG - chr6_2:5966302-5966321 Msa0907380:intron 25.0%
!!! TTTTATTGTTGGTGTTTCAT+AGG - chr6_2:5966477-5966496 Msa0907380:intron 25.0%
! TTTAAATATCTATCACTTGC+TGG - chr6_2:5967292-5967311 Msa0907380:intron 25.0%
! AATAAATCAGAACAATCAAG+GGG + chr6_2:5967328-5967347 None:intergenic 25.0%
! GTAATAAATCAGAACAATCA+AGG + chr6_2:5967330-5967349 None:intergenic 25.0%
! TCTGTTTGATTCATATTAAC+AGG - chr6_2:5967590-5967609 Msa0907380:intron 25.0%
! ATAAGTTAGTTCCTATTAAG+AGG + chr6_2:5967757-5967776 None:intergenic 25.0%
!! AATTTTGAATTGGTTAGGTT+TGG + chr6_2:5967995-5968014 None:intergenic 25.0%
!!! TAAACAGTTTGCTAAAAGTT+TGG + chr6_2:5968074-5968093 None:intergenic 25.0%
!! CAGATTTTCAGTATTTTTCA+AGG + chr6_2:5968098-5968117 None:intergenic 25.0%
!!! TGTTAGTTTTTGAACTGAAA+TGG + chr6_2:5968257-5968276 None:intergenic 25.0%
! ATGAAGCTATTAACTACAAA+TGG + chr6_2:5968348-5968367 None:intergenic 25.0%
! GTTAATAGCTTCATTAAAAG+AGG - chr6_2:5968354-5968373 Msa0907380:CDS 25.0%
!!! ATGCAGTATTTGTATTGATT+AGG - chr6_2:5968518-5968537 Msa0907380:intron 25.0%
!!! TGCAGTAATTTGTATTGATT+AGG - chr6_2:5968558-5968577 Msa0907380:intron 25.0%
!!! TAATTTGTATTGATTAGGAG+CGG - chr6_2:5968563-5968582 Msa0907380:intron 25.0%
!!! GCCTTATTTATACAAACTAA+GGG + chr6_2:5968605-5968624 None:intergenic 25.0%
! TTTGTATAAATAAGGCCATT+TGG - chr6_2:5968609-5968628 Msa0907380:intron 25.0%
! TATTCAATTAGGAACCTTAT+TGG - chr6_2:5968658-5968677 Msa0907380:intron 25.0%
!!! TTTTGCTTCTCTTTTAATTC+TGG - chr6_2:5968788-5968807 Msa0907380:intron 25.0%
! TATATGATACAAATAGAGGA+AGG - chr6_2:5968844-5968863 Msa0907380:intron 25.0%
!!! TTAAGTTGAGCAATTATTTC+TGG - chr6_2:5969053-5969072 Msa0907380:intron 25.0%
!! TAAGTTGAGCAATTATTTCT+GGG - chr6_2:5969054-5969073 Msa0907380:intron 25.0%
! ATTGAAGTAGGTATATTGAT+TGG - chr6_2:5969155-5969174 Msa0907380:intron 25.0%
! ATGTGAATCCTATTGTAAAT+AGG - chr6_2:5969436-5969455 Msa0907380:intron 25.0%
! AGATCAATCCTATTTACAAT+AGG + chr6_2:5969447-5969466 None:intergenic 25.0%
! TTTAGCAACAAAATAAACAG+GGG + chr6_2:5969501-5969520 None:intergenic 25.0%
!!! GAAAAGTTTTTCAACCTAAA+AGG + chr6_2:5969557-5969576 None:intergenic 25.0%
! GATGTTCAAAACAATGAAAT+TGG + chr6_2:5969653-5969672 None:intergenic 25.0%
! TCTACAGAAAAAAATTCACT+TGG + chr6_2:5969871-5969890 None:intergenic 25.0%
!! TGTAGAACTTCTTGTTTAAT+TGG - chr6_2:5969885-5969904 Msa0907380:CDS 25.0%
!! GTAGAACTTCTTGTTTAATT+GGG - chr6_2:5969886-5969905 Msa0907380:CDS 25.0%
! AGTTAACATAAATGGAACAA+AGG + chr6_2:5969999-5970018 None:intergenic 25.0%
! ATTCGTTTCTTTTGTGTTTG+TGG + chr6_2:5965039-5965058 None:intergenic 30.0%
!!! GTTGAAAAGTGCTTTTTTCT+TGG + chr6_2:5965062-5965081 None:intergenic 30.0%
TGTTGTTGATATGGAAATTG+TGG + chr6_2:5965205-5965224 None:intergenic 30.0%
GATTCATGTGATTACTCTAA+TGG - chr6_2:5965236-5965255 Msa0907380:CDS 30.0%
GTGATTACTCTAATGGAAAA+TGG - chr6_2:5965243-5965262 Msa0907380:CDS 30.0%
! AACGTGTAAGGAGATTTTTA+AGG - chr6_2:5965301-5965320 Msa0907380:CDS 30.0%
! ACGTGTAAGGAGATTTTTAA+GGG - chr6_2:5965302-5965321 Msa0907380:CDS 30.0%
ATAAAGGGGAATAAGAAGAA+TGG - chr6_2:5965335-5965354 Msa0907380:CDS 30.0%
! AGCTTCTAAAAATGATGATG+TGG - chr6_2:5965771-5965790 Msa0907380:CDS 30.0%
CTATAAAAGCTGTAACAAAC+AGG - chr6_2:5965816-5965835 Msa0907380:intron 30.0%
! ATGGTGAGTTGAATGTAAAA+TGG - chr6_2:5965855-5965874 Msa0907380:intron 30.0%
! AAGGGACTAAGTTACTATTT+TGG - chr6_2:5966320-5966339 Msa0907380:intron 30.0%
! AGGGACTAAGTTACTATTTT+GGG - chr6_2:5966321-5966340 Msa0907380:intron 30.0%
!! TTACTATTTTGGGAATTTGC+TGG - chr6_2:5966331-5966350 Msa0907380:intron 30.0%
CAGTGTTTATGTGTCAATAT+CGG - chr6_2:5966442-5966461 Msa0907380:intron 30.0%
TGAAACACCAACAATAAAAC+AGG + chr6_2:5966476-5966495 None:intergenic 30.0%
! AATCAAAGATGTGTGCTTTT+TGG - chr6_2:5966510-5966529 Msa0907380:intron 30.0%
AGTAAGATTGTAAGTCAGAA+AGG + chr6_2:5966690-5966709 None:intergenic 30.0%
!!! ATGCATGCTGCTTTTATATA+TGG - chr6_2:5966825-5966844 Msa0907380:intron 30.0%
GTATCACTACATATACTTAG+TGG + chr6_2:5966883-5966902 None:intergenic 30.0%
! TGTTGTTTGTTACACGTTAT+TGG - chr6_2:5966903-5966922 Msa0907380:intron 30.0%
TTTGAATCCAAGTGATTCTA+AGG + chr6_2:5966995-5967014 None:intergenic 30.0%
! AATGTGTCATGTTTTGTACT+TGG - chr6_2:5967140-5967159 Msa0907380:intron 30.0%
! TGGAAATTACAAATAATGGG+TGG - chr6_2:5967188-5967207 Msa0907380:intron 30.0%
!! GGAAATTACAAATAATGGGT+GGG - chr6_2:5967189-5967208 Msa0907380:intron 30.0%
TCTGACATCAATTCAAACAA+AGG + chr6_2:5967401-5967420 None:intergenic 30.0%
! CACATAGATAATGTCTTTTG+CGG - chr6_2:5967474-5967493 Msa0907380:intron 30.0%
GTTTGATTCATATTAACAGG+TGG - chr6_2:5967593-5967612 Msa0907380:intron 30.0%
CTCTTTCTATTCCTCTTAAT+AGG - chr6_2:5967743-5967762 Msa0907380:intron 30.0%
! TTGTTAATCTTTCAAGTCTC+AGG + chr6_2:5967808-5967827 None:intergenic 30.0%
TGAAAGATTAACAACTACCT+AGG - chr6_2:5967814-5967833 Msa0907380:intron 30.0%
TTGCAATGAAACAGTCATAA+TGG + chr6_2:5967901-5967920 None:intergenic 30.0%
! TGTCTTTTCAGCATTTTTCA+AGG + chr6_2:5968196-5968215 None:intergenic 30.0%
GTTCAAAAACTAACACAGTT+CGG - chr6_2:5968262-5968281 Msa0907380:intron 30.0%
!! TCATTAAAAGAGGGTTTTGT+AGG - chr6_2:5968364-5968383 Msa0907380:CDS 30.0%
GAATAATGTTAGGTATCAAG+TGG - chr6_2:5968418-5968437 Msa0907380:CDS 30.0%
!! GCCCTTAGTTTGTATAAATA+AGG - chr6_2:5968601-5968620 Msa0907380:intron 30.0%
!! GGCCTTATTTATACAAACTA+AGG + chr6_2:5968606-5968625 None:intergenic 30.0%
!!! ATTAGGAACCTTATTGGTTT+TGG - chr6_2:5968664-5968683 Msa0907380:intron 30.0%
!!! TTAGGAACCTTATTGGTTTT+GGG - chr6_2:5968665-5968684 Msa0907380:intron 30.0%
AGAGAAATATATCTTCTCTG+AGG - chr6_2:5968695-5968714 Msa0907380:intron 30.0%
GTTGCACAGAGTATAAATAT+TGG - chr6_2:5968866-5968885 Msa0907380:intron 30.0%
CAGAGTATAAATATTGGTCA+AGG - chr6_2:5968872-5968891 Msa0907380:intron 30.0%
!!! TGGGAATTATTTTGAGCATT+AGG - chr6_2:5968927-5968946 Msa0907380:intron 30.0%
!! ATCAGTATTCTGAAACTGTT+CGG - chr6_2:5969013-5969032 Msa0907380:intron 30.0%
GTTCTAGTATGAGAAATACT+TGG + chr6_2:5969398-5969417 None:intergenic 30.0%
!! AAACATAGGAGTTGATAAAG+TGG - chr6_2:5969811-5969830 Msa0907380:CDS 30.0%
GATTGAAGTGAATGTGAGAA+GGG + chr6_2:5965102-5965121 None:intergenic 35.0%
AGATTGAAGTGAATGTGAGA+AGG + chr6_2:5965103-5965122 None:intergenic 35.0%
AGGATGAAGAAGAAGAAGAA+GGG + chr6_2:5965151-5965170 None:intergenic 35.0%
! GAAATTGTGGATTGAAGAGA+AGG + chr6_2:5965192-5965211 None:intergenic 35.0%
AGTAATCACATGAATCGTGA+CGG + chr6_2:5965232-5965251 None:intergenic 35.0%
!! CGTGTAAGGAGATTTTTAAG+GGG - chr6_2:5965303-5965322 Msa0907380:CDS 35.0%
TAAGGGGTGGAATTGTATAA+AGG - chr6_2:5965319-5965338 Msa0907380:CDS 35.0%
AAGGGGTGGAATTGTATAAA+GGG - chr6_2:5965320-5965339 Msa0907380:CDS 35.0%
TTGAGCAGTTTGATGTTGTT+AGG - chr6_2:5965405-5965424 Msa0907380:CDS 35.0%
TAAAAGAAGCTTACCAATGC+TGG + chr6_2:5965453-5965472 None:intergenic 35.0%
GATATCAATTAGTGCGTGTT+TGG - chr6_2:5965496-5965515 Msa0907380:intron 35.0%
! TACTAAACCAGCTTCTAAAG+AGG - chr6_2:5965691-5965710 Msa0907380:CDS 35.0%
! AAACAAACCTCTTTAGAAGC+TGG + chr6_2:5965701-5965720 None:intergenic 35.0%
! TACAATCGTGGTGCTAAATT+TGG - chr6_2:5966263-5966282 Msa0907380:intron 35.0%
CAGAGTAAATCAGCATACTA+AGG + chr6_2:5966373-5966392 None:intergenic 35.0%
!! TTCAGTAATGCAGGTTTTGT+TGG - chr6_2:5966554-5966573 Msa0907380:intron 35.0%
!!! TCAGTAATGCAGGTTTTGTT+GGG - chr6_2:5966555-5966574 Msa0907380:intron 35.0%
!! TATCACTTTTCTGCACTCTA+AGG - chr6_2:5966603-5966622 Msa0907380:intron 35.0%
! CTGATGGACAAGTTAAGAAA+TGG - chr6_2:5966636-5966655 Msa0907380:intron 35.0%
AAGTCAGAAAGGTAAATCCA+CGG + chr6_2:5966679-5966698 None:intergenic 35.0%
AACAAAACAGCAAGCAATCT+TGG + chr6_2:5966764-5966783 None:intergenic 35.0%
CATGCATACAACATACTTAG+TGG + chr6_2:5966812-5966831 None:intergenic 35.0%
!! ACACGTTATTGGCTTATTTG+TGG - chr6_2:5966914-5966933 Msa0907380:intron 35.0%
TCTGTTTGATTGATTGCAGA+TGG - chr6_2:5966947-5966966 Msa0907380:intron 35.0%
AGAATCACTTGGATTCAAAG+AGG - chr6_2:5966996-5967015 Msa0907380:intron 35.0%
GAATCACTTGGATTCAAAGA+GGG - chr6_2:5966997-5967016 Msa0907380:intron 35.0%
TTGATGTTCCGGATAATACA+TGG - chr6_2:5967034-5967053 Msa0907380:intron 35.0%
TGATGTTCCGGATAATACAT+GGG - chr6_2:5967035-5967054 Msa0907380:intron 35.0%
! TAATTTTTAACACTGGGCAC+TGG - chr6_2:5967085-5967104 Msa0907380:intron 35.0%
TCCAATCAAACCAAATCCTA+GGG + chr6_2:5967224-5967243 None:intergenic 35.0%
TTCCAATCAAACCAAATCCT+AGG + chr6_2:5967225-5967244 None:intergenic 35.0%
! ACTTGAGTTGTGTGATGATT+TGG - chr6_2:5967445-5967464 Msa0907380:intron 35.0%
CGCAAAAGACATTATCTATG+TGG + chr6_2:5967476-5967495 None:intergenic 35.0%
TGATTCATATTAACAGGTGG+TGG - chr6_2:5967596-5967615 Msa0907380:intron 35.0%
GATTCATATTAACAGGTGGT+GGG - chr6_2:5967597-5967616 Msa0907380:intron 35.0%
! TCACAGGGTCAAATTTTGAA+GGG + chr6_2:5967624-5967643 None:intergenic 35.0%
! TTCACAGGGTCAAATTTTGA+AGG + chr6_2:5967625-5967644 None:intergenic 35.0%
! ACCTATGCTTTTCTTCAAGA+AGG - chr6_2:5967648-5967667 Msa0907380:intron 35.0%
! CCTATGCTTTTCTTCAAGAA+GGG - chr6_2:5967649-5967668 Msa0907380:intron 35.0%
! CAACCTCATAGTTTTTGCAT+TGG - chr6_2:5967849-5967868 Msa0907380:intron 35.0%
GATCCAATGCAAAAACTATG+AGG + chr6_2:5967855-5967874 None:intergenic 35.0%
! TCTACTGAATTTTGCGCATT+TGG - chr6_2:5967873-5967892 Msa0907380:intron 35.0%
AATAATAACAAGCACAAGCC+AGG - chr6_2:5967929-5967948 Msa0907380:intron 35.0%
ATAATAACAAGCACAAGCCA+GGG - chr6_2:5967930-5967949 Msa0907380:intron 35.0%
! ATGCACACACTTTGGTTTAA+GGG + chr6_2:5968144-5968163 None:intergenic 35.0%
TTCGGTTTAGCAGTTAAGTT+TGG - chr6_2:5968300-5968319 Msa0907380:CDS 35.0%
AGCAGTTAAGTTTGGTTGTT+AGG - chr6_2:5968308-5968327 Msa0907380:CDS 35.0%
GGTCTCAATCATGATACATA+CGG - chr6_2:5968385-5968404 Msa0907380:CDS 35.0%
!! AGGTATCAAGTGGTATTGAT+AGG - chr6_2:5968428-5968447 Msa0907380:CDS 35.0%
!! GGTATCAAGTGGTATTGATA+GGG - chr6_2:5968429-5968448 Msa0907380:CDS 35.0%
!! TGTGTGTTGATTGGTTGAAA+AGG + chr6_2:5968905-5968924 None:intergenic 35.0%
TCAACCAATCAACACACATT+TGG - chr6_2:5968907-5968926 Msa0907380:intron 35.0%
CAACCAATCAACACACATTT+GGG - chr6_2:5968908-5968927 Msa0907380:intron 35.0%
! ATTCCCAAATGTGTGTTGAT+TGG + chr6_2:5968914-5968933 None:intergenic 35.0%
! TAGGTATATTGATTGGTCGT+TGG - chr6_2:5969162-5969181 Msa0907380:intron 35.0%
GCACGTGTTAATATGATAAG+TGG - chr6_2:5969195-5969214 Msa0907380:intron 35.0%
TTCACAGATACCATATGTAG+AGG - chr6_2:5969222-5969241 Msa0907380:intron 35.0%
TAAACAGGGGCTTGAATTTA+AGG + chr6_2:5969488-5969507 None:intergenic 35.0%
! ATTGTTGAATGAGCTGACTT+TGG - chr6_2:5969520-5969539 Msa0907380:intron 35.0%
! CTTTTCTCCGTGAAGAATAA+CGG - chr6_2:5969571-5969590 Msa0907380:intron 35.0%
! TTTTCTCCGTGAAGAATAAC+GGG - chr6_2:5969572-5969591 Msa0907380:intron 35.0%
!!! ATCATCGTGTTTTTTTCCTC+CGG + chr6_2:5969719-5969738 None:intergenic 35.0%
TACCTGGAATTACAGATACA+TGG - chr6_2:5969755-5969774 Msa0907380:CDS 35.0%
TTCCATGTATCTGTAATTCC+AGG + chr6_2:5969760-5969779 None:intergenic 35.0%
! TGTTTAATTGGGTTTTGCAG+AGG - chr6_2:5969897-5969916 Msa0907380:CDS 35.0%
! GTTTAATTGGGTTTTGCAGA+GGG - chr6_2:5969898-5969917 Msa0907380:CDS 35.0%
ATGTGAGAAGGGAAAGAAGT+GGG + chr6_2:5965091-5965110 None:intergenic 40.0%
AATGTGAGAAGGGAAAGAAG+TGG + chr6_2:5965092-5965111 None:intergenic 40.0%
AAGAAGAAGAAGAAGGGTTG+CGG + chr6_2:5965145-5965164 None:intergenic 40.0%
GAGGATGAAGAAGAAGAAGA+AGG + chr6_2:5965152-5965171 None:intergenic 40.0%
! GATTGAAGAGAAGGCTTTGA+TGG + chr6_2:5965183-5965202 None:intergenic 40.0%
! GACGGTTGTTGTTGTTGATA+TGG + chr6_2:5965214-5965233 None:intergenic 40.0%
!! GTAAGGAGATTTTTAAGGGG+TGG - chr6_2:5965306-5965325 Msa0907380:CDS 40.0%
AGGGGTGGAATTGTATAAAG+GGG - chr6_2:5965321-5965340 Msa0907380:CDS 40.0%
AAGGGGAATAAGAAGAATGG+TGG - chr6_2:5965338-5965357 Msa0907380:CDS 40.0%
! ATGGTGGTGATGTTGTTAAG+TGG - chr6_2:5965354-5965373 Msa0907380:CDS 40.0%
TTGTTAAGTGGAGGTGGAAA+GGG - chr6_2:5965366-5965385 Msa0907380:CDS 40.0%
TCTAACATGAAGCTAGAACG+TGG + chr6_2:5965958-5965977 None:intergenic 40.0%
! TTTCGGTACTCGAAAGTGTA+AGG - chr6_2:5966103-5966122 Msa0907380:intron 40.0%
! TTCGGTACTCGAAAGTGTAA+GGG - chr6_2:5966104-5966123 Msa0907380:intron 40.0%
TAAGGGTCGAGCAATTTATC+TGG - chr6_2:5966121-5966140 Msa0907380:intron 40.0%
GTCTCTTGTTGAATCAAGCT+AGG - chr6_2:5966230-5966249 Msa0907380:intron 40.0%
GGCATAAGTCTTTACAATCG+TGG - chr6_2:5966251-5966270 Msa0907380:intron 40.0%
!! GTCGTGTCCTGTTTTATTGT+TGG - chr6_2:5966466-5966485 Msa0907380:intron 40.0%
!!! CAGTAATGCAGGTTTTGTTG+GGG - chr6_2:5966556-5966575 Msa0907380:intron 40.0%
AACGTGCGAGAAGATTAGTA+CGG + chr6_2:5966724-5966743 None:intergenic 40.0%
ACTAATCTTCTCGCACGTTA+TGG - chr6_2:5966725-5966744 Msa0907380:intron 40.0%
GCATACAACATACTTAGTGG+AGG + chr6_2:5966809-5966828 None:intergenic 40.0%
TAGAGTTGACGTTGATGTTC+CGG - chr6_2:5967023-5967042 Msa0907380:intron 40.0%
ACATCGATGACTAGAAAGGA+AGG + chr6_2:5967168-5967187 None:intergenic 40.0%
! TCCTTTCTAGTCATCGATGT+TGG - chr6_2:5967168-5967187 Msa0907380:intron 40.0%
TCCAACATCGATGACTAGAA+AGG + chr6_2:5967172-5967191 None:intergenic 40.0%
!! TCCCTAGGATTTGGTTTGAT+TGG - chr6_2:5967220-5967239 Msa0907380:intron 40.0%
!! CTATCACTTGCTGGTTTCAA+TGG - chr6_2:5967301-5967320 Msa0907380:intron 40.0%
!! CACAGGGTCAAATTTTGAAG+GGG + chr6_2:5967623-5967642 None:intergenic 40.0%
AAAGCATAGGTGACTTCACA+GGG + chr6_2:5967639-5967658 None:intergenic 40.0%
! AAAAGCATAGGTGACTTCAC+AGG + chr6_2:5967640-5967659 None:intergenic 40.0%
! CCCTTCTTGAAGAAAAGCAT+AGG + chr6_2:5967652-5967671 None:intergenic 40.0%
!! TGTGCTCTAAAACCATATCC+AGG + chr6_2:5967711-5967730 None:intergenic 40.0%
!!! GGATATGGTTTTAGAGCACA+TGG - chr6_2:5967711-5967730 Msa0907380:intron 40.0%
CAGGTAAACTTCAGAGCTAT+TGG + chr6_2:5967789-5967808 None:intergenic 40.0%
TAATAACAAGCACAAGCCAG+GGG - chr6_2:5967931-5967950 Msa0907380:intron 40.0%
AGTTCATATGCGATTGCAAC+TGG - chr6_2:5967959-5967978 Msa0907380:CDS 40.0%
! GATGCACACACTTTGGTTTA+AGG + chr6_2:5968145-5968164 None:intergenic 40.0%
AGTTCAAGATGCACACACTT+TGG + chr6_2:5968152-5968171 None:intergenic 40.0%
!! AGTGGTATTGATAGGGTAAC+TGG - chr6_2:5968436-5968455 Msa0907380:CDS 40.0%
!! TGTATTGATTAGGAGCAGCT+AGG - chr6_2:5968528-5968547 Msa0907380:intron 40.0%
! TATTGATTAGGAGCGGTTAC+AGG - chr6_2:5968570-5968589 Msa0907380:intron 40.0%
!!! CTTTTGCTCTAGGATTACAG+AGG - chr6_2:5968720-5968739 Msa0907380:intron 40.0%
! TTTTTCGTACTCAATCACCC+AGG - chr6_2:5969272-5969291 Msa0907380:intron 40.0%
TCAAAGGGATCGACCTTTAT+CGG - chr6_2:5969333-5969352 Msa0907380:intron 40.0%
AGGATTCACATGTCACTCTT+TGG + chr6_2:5969427-5969446 None:intergenic 40.0%
!!! TGGAAGTTTGTTGCCCTTTT+AGG - chr6_2:5969540-5969559 Msa0907380:intron 40.0%
GTTTGTCCCGTTATTCTTCA+CGG + chr6_2:5969581-5969600 None:intergenic 40.0%
! ATCCTTTAAGAGCCTTATCG+AGG + chr6_2:5969630-5969649 None:intergenic 40.0%
TCACTTACTTGAGTGAGTTC+AGG - chr6_2:5969671-5969690 Msa0907380:CDS 40.0%
CACTTACTTGAGTGAGTTCA+GGG - chr6_2:5969672-5969691 Msa0907380:CDS 40.0%
!!! GTTTTGCAGAGGGTTTTGTT+GGG - chr6_2:5969908-5969927 Msa0907380:CDS 40.0%
AGAAGAAGGGTTGCGGATTT+GGG + chr6_2:5965138-5965157 None:intergenic 45.0%
AAGAAGAAGGGTTGCGGATT+TGG + chr6_2:5965139-5965158 None:intergenic 45.0%
! AGAGAAGGCTTTGATGGAAG+AGG + chr6_2:5965177-5965196 None:intergenic 45.0%
GCGATACGATGAAACGTGTA+AGG - chr6_2:5965289-5965308 Msa0907380:CDS 45.0%
! GTGGTGATGTTGTTAAGTGG+AGG - chr6_2:5965357-5965376 Msa0907380:CDS 45.0%
GTGATGTTGTTAAGTGGAGG+TGG - chr6_2:5965360-5965379 Msa0907380:CDS 45.0%
GTTGTTAAGTGGAGGTGGAA+AGG - chr6_2:5965365-5965384 Msa0907380:CDS 45.0%
TGGGTGTGTTTCAGTAATGC+AGG - chr6_2:5966545-5966564 Msa0907380:intron 45.0%
TTGTTGGGGACTCACTCAAT+AGG - chr6_2:5966570-5966589 Msa0907380:intron 45.0%
CTAAGGAGCAGTATCTCTGA+TGG - chr6_2:5966620-5966639 Msa0907380:intron 45.0%
GTTAAGAAATGGAGACCTGC+TGG - chr6_2:5966647-5966666 Msa0907380:intron 45.0%
ATCTTCTCGCACGTTATGGT+AGG - chr6_2:5966729-5966748 Msa0907380:intron 45.0%
GCTTGTGCCCATGTATTATC+CGG + chr6_2:5967045-5967064 None:intergenic 45.0%
!!! TTTTAACACTGGGCACTGGT+AGG - chr6_2:5967089-5967108 Msa0907380:intron 45.0%
! CTTGATCTGTACGTAACGGA+GGG + chr6_2:5967687-5967706 None:intergenic 45.0%
AGGCCTTGATCTGTACGTAA+CGG + chr6_2:5967691-5967710 None:intergenic 45.0%
TACAGATCAAGGCCTGGATA+TGG - chr6_2:5967696-5967715 Msa0907380:intron 45.0%
GGTTGATCAGCATGATACCT+AGG + chr6_2:5967834-5967853 None:intergenic 45.0%
GCATATGAACTTTAGACCCC+TGG + chr6_2:5967950-5967969 None:intergenic 45.0%
GAGCACAGTTCAGTTCAGTT+TGG + chr6_2:5968043-5968062 None:intergenic 45.0%
CAGTTCGGTTCTTTGTAGTG+TGG - chr6_2:5968277-5968296 Msa0907380:intron 45.0%
CGGTTCTTTGTAGTGTGGTT+CGG - chr6_2:5968282-5968301 Msa0907380:intron 45.0%
GCCATTTGGTCACAACAGTA+GGG - chr6_2:5968623-5968642 Msa0907380:intron 45.0%
TCCCTACTGTTGTGACCAAA+TGG + chr6_2:5968627-5968646 None:intergenic 45.0%
CTCTCTGCCCAAAACCAATA+AGG + chr6_2:5968675-5968694 None:intergenic 45.0%
CGTGCTCTTTCCTCTACATA+TGG + chr6_2:5969235-5969254 None:intergenic 45.0%
CGAAAAAACTTGATTGCGCC+TGG + chr6_2:5969259-5969278 None:intergenic 45.0%
! TCAATCACCCAGGCATTTTG+AGG - chr6_2:5969282-5969301 Msa0907380:intron 45.0%
! CAATCACCCAGGCATTTTGA+GGG - chr6_2:5969283-5969302 Msa0907380:intron 45.0%
ATCAAGGTGGTTCCTGTCAA+AGG - chr6_2:5969317-5969336 Msa0907380:intron 45.0%
TCAAGGTGGTTCCTGTCAAA+GGG - chr6_2:5969318-5969337 Msa0907380:intron 45.0%
TAAAGGTCGATCCCTTTGAC+AGG + chr6_2:5969332-5969351 None:intergenic 45.0%
! GAATAACGGGACAAACGTAG+AGG - chr6_2:5969585-5969604 Msa0907380:intron 45.0%
GACAAACGTAGAGGTTCGAT+TGG - chr6_2:5969594-5969613 Msa0907380:intron 45.0%
GGTCAATGAACACCTCGATA+AGG - chr6_2:5969615-5969634 Msa0907380:intron 45.0%
CACCTCGATAAGGCTCTTAA+AGG - chr6_2:5969625-5969644 Msa0907380:CDS 45.0%
AACACGATGATTGCATGCAC+TGG - chr6_2:5969728-5969747 Msa0907380:CDS 45.0%
!! GGTTTTGCAGAGGGTTTTGT+TGG - chr6_2:5969907-5969926 Msa0907380:CDS 45.0%
!! AAAATAATTAATAACTAAAA+CGG + chr6_2:5969373-5969392 None:intergenic 5.0%
! GAAGGCTTTGATGGAAGAGG+AGG + chr6_2:5965174-5965193 None:intergenic 50.0%
TAAGTGGAGGTGGAAAGGGA+AGG - chr6_2:5965370-5965389 Msa0907380:CDS 50.0%
AAGTGGAGGTGGAAAGGGAA+GGG - chr6_2:5965371-5965390 Msa0907380:CDS 50.0%
AGTCGTGCACATTCCAGCAT+TGG - chr6_2:5965437-5965456 Msa0907380:CDS 50.0%
AGATGGTCAGCCAGTGAGAA+TGG - chr6_2:5966964-5966983 Msa0907380:intron 50.0%
GACACGAGTTCCCTAGGATT+TGG - chr6_2:5967211-5967230 Msa0907380:intron 50.0%
! GTACGTAACGGAGGGATTAC+TGG + chr6_2:5967679-5967698 None:intergenic 50.0%
CCTTGATCTGTACGTAACGG+AGG + chr6_2:5967688-5967707 None:intergenic 50.0%
CCTCCGTTACGTACAGATCA+AGG - chr6_2:5967685-5967704 Msa0907380:intron 50.0%
GTTACGTACAGATCAAGGCC+TGG - chr6_2:5967690-5967709 Msa0907380:intron 50.0%
GGCCATTTGGTCACAACAGT+AGG - chr6_2:5968622-5968641 Msa0907380:intron 50.0%
!! CTCTGAGGAGCTTTTGCTCT+AGG - chr6_2:5968710-5968729 Msa0907380:intron 50.0%
TCGACCTTTATCGGCACAAC+AGG - chr6_2:5969342-5969361 Msa0907380:intron 50.0%
! CCTACCTGTTGTGCCGATAA+AGG + chr6_2:5969349-5969368 None:intergenic 50.0%
CCTTTATCGGCACAACAGGT+AGG - chr6_2:5969346-5969365 Msa0907380:intron 50.0%
!!! TTTTTTCCTCCGGCAGAAGC+AGG + chr6_2:5969709-5969728 None:intergenic 50.0%
!!! GCAGAGGGTTTTGTTGGGTT+AGG - chr6_2:5969913-5969932 Msa0907380:CDS 50.0%
AAGGGTTGCGGATTTGGGAG+AGG + chr6_2:5965133-5965152 None:intergenic 55.0%
! GGCTTTGATGGAAGAGGAGG+AGG + chr6_2:5965171-5965190 None:intergenic 55.0%
AGTGGAGGTGGAAAGGGAAG+GGG - chr6_2:5965372-5965391 Msa0907380:CDS 55.0%
! GAAAGGGAAGGGGTGTGATG+CGG - chr6_2:5965382-5965401 Msa0907380:CDS 55.0%
TGGTCAGCCAGTGAGAATGG+CGG - chr6_2:5966967-5966986 Msa0907380:intron 55.0%
!! TAAGGCACCGCCATTCTCAC+TGG + chr6_2:5966977-5966996 None:intergenic 55.0%
GGCGGTGCCTTAGAATCACT+TGG - chr6_2:5966985-5967004 Msa0907380:intron 55.0%
! GTAGAGGAAAGAGCACGACC+AGG - chr6_2:5969238-5969257 Msa0907380:intron 55.0%
!! TCACCCAGGCATTTTGAGGG+AGG - chr6_2:5969286-5969305 Msa0907380:intron 55.0%
!! CACCCAGGCATTTTGAGGGA+GGG - chr6_2:5969287-5969306 Msa0907380:intron 55.0%
!! ACCCAGGCATTTTGAGGGAG+GGG - chr6_2:5969288-5969307 Msa0907380:intron 55.0%
TCCCCTCCCTCAAAATGCCT+GGG + chr6_2:5969292-5969311 None:intergenic 55.0%
!! GCATTTTGAGGGAGGGGACT+GGG - chr6_2:5969294-5969313 Msa0907380:intron 55.0%
GATGCTCATCCTGCTTCTGC+CGG - chr6_2:5969697-5969716 Msa0907380:CDS 55.0%
! TGCATGCACTGGTGCTTACC+TGG - chr6_2:5969739-5969758 Msa0907380:CDS 55.0%
GGTTGCGGATTTGGGAGAGG+AGG + chr6_2:5965130-5965149 None:intergenic 60.0%
GTCCCCTCCCTCAAAATGCC+TGG + chr6_2:5969293-5969312 None:intergenic 60.0%
!! GGCATTTTGAGGGAGGGGAC+TGG - chr6_2:5969293-5969312 Msa0907380:intron 60.0%
AATCCACGGTCAGCGCCAGC+AGG + chr6_2:5966665-5966684 None:intergenic 65.0%
GGGTGGGACACGAGTTCCCT+AGG - chr6_2:5967205-5967224 Msa0907380:intron 65.0%
GAGGGAGGGGACTGGGATCA+AGG - chr6_2:5969301-5969320 Msa0907380:intron 65.0%
GGAGGGGACTGGGATCAAGG+TGG - chr6_2:5969304-5969323 Msa0907380:intron 65.0%
GCTCATCCTGCTTCTGCCGG+AGG - chr6_2:5969700-5969719 Msa0907380:CDS 65.0%
!! AGACCTGCTGGCGCTGACCG+TGG - chr6_2:5966659-5966678 Msa0907380:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 5965032 5970018 5965032 ID=Msa0907380;Name=Msa0907380
chr6_2 mRNA 5965032 5970018 5965032 ID=Msa0907380-mRNA-1;Parent=Msa0907380;Name=Msa0907380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.8|0.83|1|1|1|6|193|415
chr6_2 exon 5965032 5965488 5965032 ID=Msa0907380-mRNA-1:exon:1871;Parent=Msa0907380-mRNA-1
chr6_2 exon 5965687 5965821 5965687 ID=Msa0907380-mRNA-1:exon:1870;Parent=Msa0907380-mRNA-1
chr6_2 exon 5967318 5967438 5967318 ID=Msa0907380-mRNA-1:exon:1869;Parent=Msa0907380-mRNA-1
chr6_2 exon 5967944 5968084 5967944 ID=Msa0907380-mRNA-1:exon:1868;Parent=Msa0907380-mRNA-1
chr6_2 exon 5968300 5968491 5968300 ID=Msa0907380-mRNA-1:exon:1867;Parent=Msa0907380-mRNA-1
chr6_2 exon 5969624 5970018 5969624 ID=Msa0907380-mRNA-1:exon:1866;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5969624 5970018 5969624 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5968300 5968491 5968300 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5967944 5968084 5967944 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5967318 5967438 5967318 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5965687 5965821 5965687 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 CDS 5965225 5965488 5965225 ID=Msa0907380-mRNA-1:cds;Parent=Msa0907380-mRNA-1
chr6_2 three_prime_UTR 5965032 5965224 5965032 ID=Msa0907380-mRNA-1:three_prime_utr;Parent=Msa0907380-mRNA-1
Gene Sequence

>Msa0907380

ATGGCCACAAACACAAAAGAAACGAATCCAAGAAAAAAGCACTTTTCAACATTATTCCCACTTCTTTCCCTTCTCACATTCACTTCAATCTTCTTCCTCCTCTCCCAAATCCGCAACCCTTCTTCTTCTTCTTCATCCTCCTCCTCTTCCATCAAAGCCTTCTCTTCAATCCACAATTTCCATATCAACAACAACAACCGTCACGATTCATGTGATTACTCTAATGGAAAATGGATCTACGACGAATCACGCGTTTCGCGATACGATGAAACGTGTAAGGAGATTTTTAAGGGGTGGAATTGTATAAAGGGGAATAAGAAGAATGGTGGTGATGTTGTTAAGTGGAGGTGGAAAGGGAAGGGGTGTGATGCGGTTGAGCAGTTTGATGTTGTTAGTAATGCAGGTTTTGTTGGGGACTCACTCAATAGGAACATGTTTGTATCACTTTTCTGCACTCTAAGGAGCAGTATCTCTGATGGACAAGTTAAGAAATGGAGACCTGCTGGCGCTGACCGTGGATTTACCTTTCTGACTTACAATCTTACTATTGCTTATCACCGTACTAATCTTCTCGCACGTTATGGTAGATGGTCAGCCAGTGAGAATGGCGGTGCCTTAGAATCACTTGGATTCAAAGAGGGCTATAGAGTTGACGTTGATGTTCCGGATAATACATGGGCACAAGCTGCAAGTTTCCACGATATTCTAATTTTTAACACTGGGCACTGGTGGTGGGCCCCTTCAAAATTTGACCCTGTGAAGTCACCTATGCTTTTCTTCAAGAAGGGTCAGCCAGTAATCCCTCCGTTACGTACAGATCAAGGCCTGGATATGGTTTTAGAGCACATGATACCATATGTAGAGGAAAGAGCACGACCAGGCGCAATCAAGTTTTTTCGTACTCAATCACCCAGGCATTTTGAGGGAGGGGACTGGGATCAAGGTGGTTCCTGTCAAAGGGATCGACCTTTATCGGCACAACAGGTTGAAAAACTTTTCTCCGTGAAGAATAACGGGACAAACGTAGAGGTTCGATTGGTCAATGAACACCTCGATAAGGCTCTTAAAGGATCCAATTTCATTGTTTTGAACATCACTTACTTGAGTGAGTTCAGGGCTGATGCTCATCCTGCTTCTGCCGGAGGAAAAAAACACGATGATTGCATGCACTGGTGCTTACCTGGAATTACAGATACATGGAATGACTTATTTGTAGAGCATCTAAATAGTATCAAACATAGGAGTTGA
Protein sequence

>Msa0907380

MATNTKETNPRKKHFSTLFPLLSLLTFTSIFFLLSQIRNPSSSSSSSSSSIKAFSSIHNFHINNNNRHDSCDYSNGKWIYDESRVSRYDETCKEIFKGWNCIKGNKKNGGDVVKWRWKGKGCDAVEQFDVVSNAGFVGDSLNRNMFVSLFCTLRSSISDGQVKKWRPAGADRGFTFLTYNLTIAYHRTNLLARYGRWSASENGGALESLGFKEGYRVDVDVPDNTWAQAASFHDILIFNTGHWWWAPSKFDPVKSPMLFFKKGQPVIPPLRTDQGLDMVLEHMIPYVEERARPGAIKFFRTQSPRHFEGGDWDQGGSCQRDRPLSAQQVEKLFSVKNNGTNVEVRLVNEHLDKALKGSNFIVLNITYLSEFRADAHPASAGGKKHDDCMHWCLPGITDTWNDLFVEHLNSIKHRS*