Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849100 | XP_017425985.1 | 84.168 | 499 | 47 | 1 | 32 | 530 | 1 | 467 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849100 | sp|Q869R1|CTLHB_DICDI | 24.754 | 509 | 305 | 16 | 11 | 507 | 113 | 555 | 1.32e-31 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849100 | G7JYE2 | 90.977 | 532 | 7 | 1 | 1 | 532 | 1 | 491 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0849100 | -0.803156 | 3.988248e-49 | -8.615850e-47 |
| Msa0011660 | Msa0849100 | -0.825766 | 3.918141e-54 | -8.615850e-47 |
| Msa0015390 | Msa0849100 | 0.832904 | 7.242822e-56 | -8.615850e-47 |
| Msa0017510 | Msa0849100 | 0.858388 | 8.523692e-63 | -8.615850e-47 |
| Msa0024210 | Msa0849100 | -0.827311 | 1.678218e-54 | -8.615850e-47 |
| Msa0046100 | Msa0849100 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa0052680 | Msa0849100 | 0.821581 | 3.742801e-53 | -8.615850e-47 |
| Msa0052730 | Msa0849100 | 0.838902 | 2.181801e-57 | -8.615850e-47 |
| Msa0053780 | Msa0849100 | 0.808655 | 2.783689e-50 | -8.615850e-47 |
| Msa0096450 | Msa0849100 | 0.825064 | 5.745448e-54 | -8.615850e-47 |
| Msa0097810 | Msa0849100 | 0.803411 | 3.530348e-49 | -8.615850e-47 |
| Msa0097840 | Msa0849100 | 0.801352 | 9.375982e-49 | -8.615850e-47 |
| Msa0101810 | Msa0849100 | -0.801096 | 1.057630e-48 | -8.615850e-47 |
| Msa0110970 | Msa0849100 | 0.807563 | 4.755415e-50 | -8.615850e-47 |
| Msa0120010 | Msa0849100 | -0.821765 | 3.391936e-53 | -8.615850e-47 |
| Msa0120020 | Msa0849100 | -0.825337 | 4.952063e-54 | -8.615850e-47 |
| Msa0120040 | Msa0849100 | -0.814807 | 1.276495e-51 | -8.615850e-47 |
| Msa0602870 | Msa0849100 | 0.818003 | 2.458272e-52 | -8.615850e-47 |
| Msa0626090 | Msa0849100 | 0.801607 | 8.315375e-49 | -8.615850e-47 |
| Msa0641870 | Msa0849100 | 0.800836 | 1.195787e-48 | -8.615850e-47 |
| Msa0643890 | Msa0849100 | 0.825340 | 4.945271e-54 | -8.615850e-47 |
| Msa0657970 | Msa0849100 | 0.804362 | 2.239936e-49 | -8.615850e-47 |
| Msa0663380 | Msa0849100 | 0.805752 | 1.146938e-49 | -8.615850e-47 |
| Msa0669320 | Msa0849100 | 0.836710 | 7.977232e-57 | -8.615850e-47 |
| Msa0683730 | Msa0849100 | 0.834020 | 3.815400e-56 | -8.615850e-47 |
| Msa0721280 | Msa0849100 | 0.808534 | 2.953746e-50 | -8.615850e-47 |
| Msa0729720 | Msa0849100 | 0.863905 | 1.782506e-64 | -8.615850e-47 |
| Msa0731940 | Msa0849100 | 0.836264 | 1.035864e-56 | -8.615850e-47 |
| Msa0743720 | Msa0849100 | 0.814866 | 1.238345e-51 | -8.615850e-47 |
| Msa0753720 | Msa0849100 | 0.806406 | 8.356325e-50 | -8.615850e-47 |
| Msa0756060 | Msa0849100 | 0.804057 | 2.592492e-49 | -8.615850e-47 |
| Msa0757450 | Msa0849100 | -0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0757500 | Msa0849100 | -0.813207 | 2.876174e-51 | -8.615850e-47 |
| Msa0767080 | Msa0849100 | 0.807134 | 5.864292e-50 | -8.615850e-47 |
| Msa0770080 | Msa0849100 | 0.867062 | 1.805014e-65 | -8.615850e-47 |
| Msa0777570 | Msa0849100 | -0.832658 | 8.334847e-56 | -8.615850e-47 |
| Msa0807930 | Msa0849100 | 0.873190 | 1.781033e-67 | -8.615850e-47 |
| Msa0810220 | Msa0849100 | 0.818379 | 2.021743e-52 | -8.615850e-47 |
| Msa0820770 | Msa0849100 | 0.803204 | 3.898311e-49 | -8.615850e-47 |
| Msa0822870 | Msa0849100 | 0.821500 | 3.906155e-53 | -8.615850e-47 |
| Msa0826130 | Msa0849100 | 0.808115 | 3.629722e-50 | -8.615850e-47 |
| Msa0834770 | Msa0849100 | 0.819870 | 9.256720e-53 | -8.615850e-47 |
| Msa0838580 | Msa0849100 | 0.814117 | 1.814039e-51 | -8.615850e-47 |
| Msa0140780 | Msa0849100 | 0.811202 | 7.879087e-51 | -8.615850e-47 |
| Msa0157290 | Msa0849100 | 0.858579 | 7.479054e-63 | -8.615850e-47 |
| Msa0178930 | Msa0849100 | 0.800317 | 1.525418e-48 | -8.615850e-47 |
| Msa0194280 | Msa0849100 | 0.809675 | 1.682710e-50 | -8.615850e-47 |
| Msa0200260 | Msa0849100 | 0.807812 | 4.210481e-50 | -8.615850e-47 |
| Msa0205510 | Msa0849100 | 0.822651 | 2.113332e-53 | -8.615850e-47 |
| Msa0212990 | Msa0849100 | 0.808294 | 3.323552e-50 | -8.615850e-47 |
| Msa0215320 | Msa0849100 | -0.824733 | 6.879475e-54 | -8.615850e-47 |
| Msa0218810 | Msa0849100 | 0.807478 | 4.957974e-50 | -8.615850e-47 |
| Msa0224330 | Msa0849100 | 0.806183 | 9.309538e-50 | -8.615850e-47 |
| Msa0388960 | Msa0849100 | 0.807290 | 5.432023e-50 | -8.615850e-47 |
| Msa0389340 | Msa0849100 | 0.804460 | 2.137235e-49 | -8.615850e-47 |
| Msa0392510 | Msa0849100 | 0.820524 | 6.555260e-53 | -8.615850e-47 |
| Msa0395790 | Msa0849100 | 0.818626 | 1.777042e-52 | -8.615850e-47 |
| Msa0410650 | Msa0849100 | 0.812784 | 3.561115e-51 | -8.615850e-47 |
| Msa0417270 | Msa0849100 | 0.822550 | 2.230916e-53 | -8.615850e-47 |
| Msa0426640 | Msa0849100 | 0.816138 | 6.453209e-52 | -8.615850e-47 |
| Msa0426900 | Msa0849100 | 0.803191 | 3.921759e-49 | -8.615850e-47 |
| Msa0428590 | Msa0849100 | 0.803376 | 3.591111e-49 | -8.615850e-47 |
| Msa0443260 | Msa0849100 | 0.826937 | 2.062649e-54 | -8.615850e-47 |
| Msa0444750 | Msa0849100 | -0.845326 | 4.354553e-59 | -8.615850e-47 |
| Msa0469160 | Msa0849100 | 0.807113 | 5.922749e-50 | -8.615850e-47 |
| Msa0243710 | Msa0849100 | 0.805866 | 1.085400e-49 | -8.615850e-47 |
| Msa0244960 | Msa0849100 | 0.810681 | 1.021496e-50 | -8.615850e-47 |
| Msa0257460 | Msa0849100 | 0.802186 | 6.321174e-49 | -8.615850e-47 |
| Msa0258310 | Msa0849100 | 0.810674 | 1.025018e-50 | -8.615850e-47 |
| Msa0259500 | Msa0849100 | 0.822523 | 2.263545e-53 | -8.615850e-47 |
| Msa0274290 | Msa0849100 | 0.817906 | 2.585818e-52 | -8.615850e-47 |
| Msa0276630 | Msa0849100 | 0.818754 | 1.661593e-52 | -8.615850e-47 |
| Msa0287650 | Msa0849100 | 0.818632 | 1.771545e-52 | -8.615850e-47 |
| Msa0288100 | Msa0849100 | 0.800756 | 1.241322e-48 | -8.615850e-47 |
| Msa0300690 | Msa0849100 | 0.810768 | 9.778980e-51 | -8.615850e-47 |
| Msa0305700 | Msa0849100 | 0.819597 | 1.068187e-52 | -8.615850e-47 |
| Msa0321310 | Msa0849100 | 0.809748 | 1.623479e-50 | -8.615850e-47 |
| Msa0330340 | Msa0849100 | 0.805469 | 1.314848e-49 | -8.615850e-47 |
| Msa0334360 | Msa0849100 | 0.801139 | 1.036478e-48 | -8.615850e-47 |
| Msa0336040 | Msa0849100 | -0.806584 | 7.662881e-50 | -8.615850e-47 |
| Msa0341050 | Msa0849100 | 0.806854 | 6.720281e-50 | -8.615850e-47 |
| Msa0341540 | Msa0849100 | 0.825624 | 4.235618e-54 | -8.615850e-47 |
| Msa0357290 | Msa0849100 | 0.802832 | 4.652067e-49 | -8.615850e-47 |
| Msa0357340 | Msa0849100 | 0.800026 | 1.748339e-48 | -8.615850e-47 |
| Msa0359030 | Msa0849100 | 0.822159 | 2.749022e-53 | -8.615850e-47 |
| Msa0489100 | Msa0849100 | 0.817708 | 2.865679e-52 | -8.615850e-47 |
| Msa0490390 | Msa0849100 | 0.802256 | 6.116734e-49 | -8.615850e-47 |
| Msa0495320 | Msa0849100 | 0.810119 | 1.350537e-50 | -8.615850e-47 |
| Msa0495330 | Msa0849100 | 0.816051 | 6.750144e-52 | -8.615850e-47 |
| Msa0498650 | Msa0849100 | 0.812326 | 4.484516e-51 | -8.615850e-47 |
| Msa0507680 | Msa0849100 | 0.811578 | 6.528366e-51 | -8.615850e-47 |
| Msa0523460 | Msa0849100 | 0.825925 | 3.593677e-54 | -8.615850e-47 |
| Msa0536220 | Msa0849100 | 0.805126 | 1.551790e-49 | -8.615850e-47 |
| Msa0539530 | Msa0849100 | -0.822103 | 2.833222e-53 | -8.615850e-47 |
| Msa0547320 | Msa0849100 | 0.806258 | 8.977856e-50 | -8.615850e-47 |
| Msa0547890 | Msa0849100 | 0.817885 | 2.614075e-52 | -8.615850e-47 |
| Msa0572420 | Msa0849100 | 0.808706 | 2.714557e-50 | -8.615850e-47 |
| Msa0574890 | Msa0849100 | 0.850611 | 1.518225e-60 | -8.615850e-47 |
| Msa0581760 | Msa0849100 | 0.800272 | 1.558146e-48 | -8.615850e-47 |
| Msa0594660 | Msa0849100 | 0.804965 | 1.676658e-49 | -8.615850e-47 |
| Msa0599890 | Msa0849100 | 0.800113 | 1.678420e-48 | -8.615850e-47 |
| Msa0601750 | Msa0849100 | 0.818014 | 2.445130e-52 | -8.615850e-47 |
| Msa0843220 | Msa0849100 | 0.803343 | 3.647814e-49 | -8.615850e-47 |
| Msa0844490 | Msa0849100 | 0.811866 | 5.651757e-51 | -8.615850e-47 |
| Msa0846810 | Msa0849100 | 0.810282 | 1.245635e-50 | -8.615850e-47 |
| Msa0849100 | Msa0857640 | 0.803870 | 2.835202e-49 | -8.615850e-47 |
| Msa0849100 | Msa0861090 | 0.801076 | 1.067710e-48 | -8.615850e-47 |
| Msa0849100 | Msa0880140 | 0.857913 | 1.180423e-62 | -8.615850e-47 |
| Msa0849100 | Msa0896220 | 0.841226 | 5.402417e-58 | -8.615850e-47 |
| Msa0849100 | Msa0897330 | 0.807100 | 5.961356e-50 | -8.615850e-47 |
| Msa0849100 | Msa0907380 | 0.802911 | 4.480759e-49 | -8.615850e-47 |
| Msa0849100 | Msa0908050 | 0.805965 | 1.034813e-49 | -8.615850e-47 |
| Msa0849100 | Msa0930830 | -0.807751 | 4.336491e-50 | -8.615850e-47 |
| Msa0849100 | Msa0933100 | 0.804967 | 1.674995e-49 | -8.615850e-47 |
| Msa0849100 | Msa0934890 | 0.816139 | 6.452016e-52 | -8.615850e-47 |
| Msa0849100 | Msa0936300 | 0.815004 | 1.154520e-51 | -8.615850e-47 |
| Msa0849100 | Msa0942200 | 0.806480 | 8.059708e-50 | -8.615850e-47 |
| Msa0849100 | Msa0944030 | 0.802652 | 5.067451e-49 | -8.615850e-47 |
| Msa0849100 | Msa0947660 | 0.819002 | 1.459382e-52 | -8.615850e-47 |
| Msa0849100 | Msa0969520 | 0.835208 | 1.917601e-56 | -8.615850e-47 |
| Msa0849100 | Msa0973100 | 0.812010 | 5.257024e-51 | -8.615850e-47 |
| Msa0849100 | Msa0982240 | 0.816095 | 6.596936e-52 | -8.615850e-47 |
| Msa0849100 | Msa1004550 | 0.809454 | 1.877168e-50 | -8.615850e-47 |
| Msa0849100 | Msa1004600 | 0.807967 | 3.901929e-50 | -8.615850e-47 |
| Msa0849100 | Msa1005870 | 0.807065 | 6.064328e-50 | -8.615850e-47 |
| Msa0849100 | Msa1014540 | 0.802720 | 4.906922e-49 | -8.615850e-47 |
| Msa0849100 | Msa1019000 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0849100 | Msa1030970 | 0.814269 | 1.679099e-51 | -8.615850e-47 |
| Msa0849100 | Msa1044420 | 0.803031 | 4.233157e-49 | -8.615850e-47 |
| Msa0849100 | Msa1047980 | 0.813817 | 2.112288e-51 | -8.615850e-47 |
| Msa0849100 | Msa1075220 | -0.859694 | 3.464321e-63 | -8.615850e-47 |
| Msa0849100 | Msa1082500 | 0.804075 | 2.570265e-49 | -8.615850e-47 |
| Msa0849100 | Msa1085200 | 0.819733 | 9.947918e-53 | -8.615850e-47 |
| Msa0849100 | Msa1085300 | 0.806264 | 8.951283e-50 | -8.615850e-47 |
| Msa0849100 | Msa1092010 | 0.807759 | 4.319661e-50 | -8.615850e-47 |
| Msa0849100 | Msa1100050 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0849100 | Msa1113170 | 0.810693 | 1.015248e-50 | -8.615850e-47 |
| Msa0849100 | Msa1116130 | -0.832823 | 7.584656e-56 | -8.615850e-47 |
| Msa0849100 | Msa1119480 | 0.814547 | 1.457596e-51 | -8.615850e-47 |
| Msa0849100 | Msa1121490 | 0.819427 | 1.168317e-52 | -8.615850e-47 |
| Msa0849100 | Msa1125000 | 0.845867 | 3.105636e-59 | -8.615850e-47 |
| Msa0849100 | Msa1130270 | -0.812112 | 4.995068e-51 | -8.615850e-47 |
| Msa0849100 | Msa1137570 | 0.835960 | 1.237700e-56 | -8.615850e-47 |
| Msa0849100 | Msa1139000 | -0.828534 | 8.523992e-55 | -8.615850e-47 |
| Msa0849100 | Msa1151910 | 0.822095 | 2.844673e-53 | -8.615850e-47 |
| Msa0849100 | Msa1154030 | 0.818477 | 1.920292e-52 | -8.615850e-47 |
| Msa0849100 | Msa1162550 | -0.859350 | 4.395113e-63 | -8.615850e-47 |
| Msa0849100 | Msa1170800 | 0.816458 | 5.473047e-52 | -8.615850e-47 |
| Msa0849100 | Msa1173100 | 0.838715 | 2.438789e-57 | -8.615850e-47 |
| Msa0849100 | Msa1179460 | 0.803235 | 3.841096e-49 | -8.615850e-47 |
| Msa0849100 | Msa1186060 | 0.800020 | 1.753062e-48 | -8.615850e-47 |
| Msa0849100 | Msa1193290 | 0.804138 | 2.494207e-49 | -8.615850e-47 |
| Msa0849100 | Msa1218280 | -0.806449 | 8.181315e-50 | -8.615850e-47 |
| Msa0849100 | Msa1228210 | 0.803236 | 3.838704e-49 | -8.615850e-47 |
| Msa0849100 | Msa1239530 | 0.800685 | 1.283652e-48 | -8.615850e-47 |
| Msa0849100 | Msa1244610 | 0.807308 | 5.385482e-50 | -8.615850e-47 |
| Msa0849100 | Msa1255190 | 0.818580 | 1.819846e-52 | -8.615850e-47 |
| Msa0849100 | Msa1283860 | 0.812590 | 3.926966e-51 | -8.615850e-47 |
| Msa0849100 | Msa1284260 | 0.818366 | 2.035387e-52 | -8.615850e-47 |
| Msa0849100 | Msa1284680 | 0.819377 | 1.199316e-52 | -8.615850e-47 |
| Msa0849100 | Msa1286800 | 0.853590 | 2.161331e-61 | -8.615850e-47 |
| Msa0849100 | Msa1287190 | 0.813702 | 2.239466e-51 | -8.615850e-47 |
| Msa0849100 | Msa1287220 | 0.817724 | 2.843187e-52 | -8.615850e-47 |
| Msa0849100 | Msa1295630 | 0.800688 | 1.281376e-48 | -8.615850e-47 |
| Msa0849100 | Msa1306850 | 0.810001 | 1.431956e-50 | -8.615850e-47 |
| Msa0849100 | Msa1310770 | -0.808390 | 3.170964e-50 | -8.615850e-47 |
| Msa0849100 | Msa1322860 | 0.808493 | 3.014908e-50 | -8.615850e-47 |
| Msa0849100 | Msa1324500 | 0.815121 | 1.087344e-51 | -8.615850e-47 |
| Msa0849100 | Msa1327050 | 0.822047 | 2.919592e-53 | -8.615850e-47 |
| Msa0849100 | Msa1327680 | 0.803814 | 2.912650e-49 | -8.615850e-47 |
| Msa0849100 | Msa1346370 | 0.813150 | 2.961216e-51 | -8.615850e-47 |
| Msa0849100 | Msa1353470 | 0.839650 | 1.395765e-57 | -8.615850e-47 |
| Msa0849100 | Msa1357890 | 0.807234 | 5.584343e-50 | -8.615850e-47 |
| Msa0849100 | Msa1359040 | 0.812026 | 5.213477e-51 | -8.615850e-47 |
| Msa0849100 | Msa1361770 | 0.809934 | 1.480230e-50 | -8.615850e-47 |
| Msa0849100 | Msa1374550 | 0.815575 | 8.619428e-52 | -8.615850e-47 |
| Msa0849100 | Msa1384350 | 0.804310 | 2.297006e-49 | -8.615850e-47 |
| Msa0849100 | Msa1398090 | 0.813019 | 3.162866e-51 | -8.615850e-47 |
| Msa0849100 | Msa1407640 | -0.803157 | 3.985856e-49 | -8.615850e-47 |
| Msa0849100 | Msa1411700 | 0.826486 | 2.642360e-54 | -8.615850e-47 |
| Msa0849100 | Msa1423880 | 0.820813 | 5.624209e-53 | -8.615850e-47 |
| Msa0849100 | Msa1447150 | 0.812000 | 5.284166e-51 | -8.615850e-47 |
| Msa0849100 | Msa1451620 | -0.803154 | 3.990642e-49 | -8.615850e-47 |
| Msa0849100 | Msa1461300 | 0.817145 | 3.838224e-52 | -8.615850e-47 |
| Msa0849100 | Msa1464940 | 0.800677 | 1.288025e-48 | -8.615850e-47 |
| Msa0849100 | Msa1465300 | 0.856489 | 3.107902e-62 | -8.615850e-47 |
| Msa0849100 | Msa1466540 | 0.801674 | 8.055000e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849100 | MtrunA17_Chr5g0422761 | 90.977 | 532 | 7 | 1 | 1 | 532 | 1 | 491 | 0.0 | 946 |
| Msa0849100 | MtrunA17_Chr1g0210161 | 76.389 | 504 | 75 | 2 | 29 | 532 | 35 | 494 | 0.0 | 731 |
| Msa0849100 | MtrunA17_Chr3g0090051 | 26.361 | 349 | 178 | 8 | 150 | 486 | 262 | 543 | 1.22e-24 | 107 |
| Msa0849100 | MtrunA17_Chr4g0061051 | 72.308 | 65 | 15 | 1 | 468 | 532 | 1 | 62 | 3.39e-24 | 95.9 |
| Msa0849100 | MtrunA17_Chr7g0275761 | 69.231 | 65 | 17 | 1 | 468 | 532 | 1 | 62 | 6.11e-23 | 92.0 |
| Msa0849100 | MtrunA17_Chr7g0254111 | 30.488 | 246 | 154 | 5 | 269 | 512 | 219 | 449 | 2.03e-21 | 97.1 |
| Msa0849100 | MtrunA17_Chr6g0460811 | 28.311 | 219 | 147 | 4 | 270 | 486 | 205 | 415 | 1.80e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849100 | AT1G25500.2 | 68.217 | 516 | 117 | 4 | 8 | 520 | 15 | 486 | 0.0 | 658 |
| Msa0849100 | AT1G25500.3 | 71.523 | 453 | 87 | 2 | 69 | 520 | 17 | 428 | 0.0 | 606 |
| Msa0849100 | AT1G25500.1 | 71.221 | 344 | 57 | 2 | 121 | 463 | 1 | 303 | 6.31e-162 | 462 |
| Msa0849100 | AT5G13760.1 | 25.519 | 337 | 196 | 4 | 150 | 486 | 252 | 533 | 3.80e-26 | 112 |
| Msa0849100 | AT3G04440.2 | 26.667 | 255 | 168 | 6 | 270 | 518 | 206 | 447 | 3.90e-17 | 84.3 |
| Msa0849100 | AT3G04440.1 | 26.667 | 255 | 168 | 6 | 270 | 518 | 229 | 470 | 5.80e-17 | 84.0 |
| Msa0849100 | AT3G03700.1 | 26.667 | 255 | 168 | 6 | 270 | 518 | 229 | 470 | 5.90e-17 | 84.0 |
Find 155 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCAACTAACTTTAAAA+TGG | 0.145187 | 5_4:+35398398 | None:intergenic |
| GAGAGTCGCATATGCGTTTA+TGG | 0.163908 | 5_4:-35395712 | Msa0849100:CDS |
| TCCTCTCTGTAAGCTTATTT+TGG | 0.187066 | 5_4:-35395470 | Msa0849100:CDS |
| CCTTTGAAGATTGGTGTTTA+TGG | 0.194371 | 5_4:-35394890 | Msa0849100:intron |
| TTATGGCTGTCATGCTCTTA+TGG | 0.229988 | 5_4:-35395695 | Msa0849100:CDS |
| TTTAGTGATTCCTCAAATTT+AGG | 0.231192 | 5_4:+35393605 | None:intergenic |
| CTATTATTCGTTACAGCTTT+TGG | 0.231291 | 5_4:-35398176 | Msa0849100:five_prime_UTR |
| TTCATTCTGTCTGTTCTTGT+TGG | 0.232566 | 5_4:-35395573 | Msa0849100:CDS |
| GTAGTAGCTTTGAGCTATAT+TGG | 0.258275 | 5_4:-35393434 | Msa0849100:three_prime_UTR |
| TTCAGGTGCTGTGCTGTTAA+TGG | 0.262803 | 5_4:-35394786 | Msa0849100:CDS |
| TGCAGAACCAACATTGTAAA+TGG | 0.266173 | 5_4:+35395774 | None:intergenic |
| AGTTATCAGCCCACCTAAAA+TGG | 0.267123 | 5_4:+35394760 | None:intergenic |
| TTGTGATTCTTGGCGTTAAC+AGG | 0.271164 | 5_4:-35397773 | Msa0849100:CDS |
| CTGGAACTTGCTCTGGTGTT+TGG | 0.293203 | 5_4:-35394739 | Msa0849100:CDS |
| GGCGTTGGCACGATGTATTC+TGG | 0.294547 | 5_4:-35397839 | Msa0849100:CDS |
| CGTTATTCACAGCTGCTATT+AGG | 0.295532 | 5_4:-35395284 | Msa0849100:CDS |
| CTGGTTTGACAGAGGATTAC+TGG | 0.297174 | 5_4:-35397689 | Msa0849100:CDS |
| TCCCATCTCTGAATCAATAA+TGG | 0.300289 | 5_4:+35393744 | None:intergenic |
| CTGATTCGTGTTAGTATTCA+TGG | 0.323237 | 5_4:-35395399 | Msa0849100:CDS |
| TGGAACTTGCTCTGGTGTTT+GGG | 0.323340 | 5_4:-35394738 | Msa0849100:CDS |
| TTTGATTCGTTTCAGATAAG+AGG | 0.327931 | 5_4:-35395159 | Msa0849100:intron |
| ATTCCTAAGTGGTGATGATT+TGG | 0.333572 | 5_4:+35398311 | None:intergenic |
| CAAGATAAGTGGTAAGAATA+TGG | 0.340491 | 5_4:+35397568 | None:intergenic |
| CTAACAAGATGCATCAAATA+TGG | 0.340891 | 5_4:-35393406 | Msa0849100:three_prime_UTR |
| TATGCTCATGGGCATGATAT+TGG | 0.343150 | 5_4:-35394669 | Msa0849100:intron |
| TCATCAACTAACTTTAAAAT+GGG | 0.343416 | 5_4:+35398399 | None:intergenic |
| GGCGGTGTTGGGACTGCTCT+TGG | 0.352295 | 5_4:-35397648 | Msa0849100:CDS |
| AAATTTGAGGAATCACTAAA+TGG | 0.358261 | 5_4:-35393602 | Msa0849100:three_prime_UTR |
| TTAGCTTATGCTTATCTCAT+TGG | 0.359043 | 5_4:-35395519 | Msa0849100:CDS |
| TGGATGGCATTGTGGTCATT+TGG | 0.361862 | 5_4:-35395675 | Msa0849100:CDS |
| TTCCGCATAACAGATATATA+TGG | 0.362458 | 5_4:+35393770 | None:intergenic |
| TCATTCTTTGGAACTATTCA+AGG | 0.362770 | 5_4:+35393347 | None:intergenic |
| ATGCTGTCGCTGGCGGTGTT+GGG | 0.368735 | 5_4:-35397659 | Msa0849100:CDS |
| TATGCTGTCGCTGGCGGTGT+TGG | 0.369169 | 5_4:-35397660 | Msa0849100:CDS |
| TATGCTTTAACAACATCTTT+TGG | 0.373372 | 5_4:-35395324 | Msa0849100:CDS |
| ACGAAAATAGATTAGATAGA+AGG | 0.379012 | 5_4:+35398238 | None:intergenic |
| TACAATGTTGGTTCTGCAAA+AGG | 0.380351 | 5_4:-35395769 | Msa0849100:CDS |
| AAAAGCATTGCACAGCTTGT+TGG | 0.384385 | 5_4:+35398066 | None:intergenic |
| AACGTTGCCATGCGCCATCT+TGG | 0.385559 | 5_4:+35398367 | None:intergenic |
| GAGATGAAGTAGGAATAAAA+AGG | 0.387744 | 5_4:+35398116 | None:intergenic |
| ATGGAGTTGGTTGTTGCTGT+TGG | 0.393555 | 5_4:-35397625 | Msa0849100:CDS |
| CCAGAAAACGCCTAAATTTG+AGG | 0.402709 | 5_4:-35393615 | Msa0849100:exon |
| TCAGGTGCTGTGCTGTTAAT+GGG | 0.404479 | 5_4:-35394785 | Msa0849100:CDS |
| CTATTTGTGATCCAATTGAT+TGG | 0.405569 | 5_4:-35397810 | Msa0849100:CDS |
| ACAGTACATGTCATAGTGTC+TGG | 0.405736 | 5_4:-35395426 | Msa0849100:CDS |
| TAGTAGCTTTGAGCTATATT+GGG | 0.407631 | 5_4:-35393433 | Msa0849100:three_prime_UTR |
| CAAAACCCACGCCAATCAAT+TGG | 0.407875 | 5_4:+35397799 | None:intergenic |
| TTGTGGTCATTTGGAGCTGC+TGG | 0.409399 | 5_4:-35395666 | Msa0849100:CDS |
| TTGAATGTGAGAAAAGAAAA+AGG | 0.410051 | 5_4:+35398153 | None:intergenic |
| CTTGCTCTGGTGTTTGGGCA+TGG | 0.410854 | 5_4:-35394733 | Msa0849100:CDS |
| TTGCGAGGCTGCATCAGTTC+CGG | 0.412997 | 5_4:-35395373 | Msa0849100:CDS |
| TCTGTTCTTGTTGGATTCGT+TGG | 0.416260 | 5_4:-35395564 | Msa0849100:CDS |
| GGTGCAATGTCTCGGAAATC+TGG | 0.422873 | 5_4:+35393706 | None:intergenic |
| GGTGGCTTCTTGTGGTGAGC+TGG | 0.428043 | 5_4:-35395608 | Msa0849100:CDS |
| TACCTGATTGTTGGTGGCAG+TGG | 0.431092 | 5_4:+35398009 | None:intergenic |
| ACCGTTCTGCAAGAGATGCC+TGG | 0.432100 | 5_4:-35394856 | Msa0849100:CDS |
| TAAGTACACGTACCGGTTCA+TGG | 0.432396 | 5_4:-35397721 | Msa0849100:CDS |
| CCCATCTCTGAATCAATAAT+GGG | 0.437239 | 5_4:+35393745 | None:intergenic |
| TTAACTTAGTACCTGATTGT+TGG | 0.439199 | 5_4:+35398000 | None:intergenic |
| CTGATAACTGGAACTTGCTC+TGG | 0.440852 | 5_4:-35394746 | Msa0849100:CDS |
| GGACTGCTCTTGGATGGAGT+TGG | 0.442052 | 5_4:-35397638 | Msa0849100:CDS |
| TGGAGTTGGTTGTTGCTGTT+GGG | 0.445429 | 5_4:-35397624 | Msa0849100:CDS |
| TGGGAGTTATTTCAATCAAC+GGG | 0.445833 | 5_4:-35394836 | Msa0849100:CDS |
| AGAGGAATCCGGTCAAAGAT+AGG | 0.447023 | 5_4:-35395141 | Msa0849100:CDS |
| CAGACTTCCATTTACAATGT+TGG | 0.448036 | 5_4:-35395781 | Msa0849100:CDS |
| ATACTGTAAAGATTTCATTA+TGG | 0.449302 | 5_4:+35395344 | None:intergenic |
| ATCTTGTGGAGACTCTTGTC+AGG | 0.452670 | 5_4:-35395077 | Msa0849100:CDS |
| CATTCTTGCCTATCTTTGAC+CGG | 0.452929 | 5_4:+35395133 | None:intergenic |
| GGACAGACACCTTCATCATC+TGG | 0.455412 | 5_4:+35397589 | None:intergenic |
| ACAATATGCAGGGAATGTAT+AGG | 0.458422 | 5_4:-35397911 | Msa0849100:intron |
| GGTTGGAGCGGCAATGGTTG+TGG | 0.459158 | 5_4:-35393811 | Msa0849100:CDS |
| GTGTTTGGGCATGGATGAAA+TGG | 0.463121 | 5_4:-35394724 | Msa0849100:CDS |
| AATGAAACTAAAAGATGTAA+AGG | 0.463613 | 5_4:+35393530 | None:intergenic |
| TTGGATTCGTTGGTTACATA+CGG | 0.465913 | 5_4:-35395554 | Msa0849100:CDS |
| CTTGTGGCGTATGATTGTTC+AGG | 0.468254 | 5_4:-35394803 | Msa0849100:CDS |
| CGTTTCAGATAAGAGGAATC+CGG | 0.479860 | 5_4:-35395152 | Msa0849100:intron |
| CCCATTATTGATTCAGAGAT+GGG | 0.480499 | 5_4:-35393745 | Msa0849100:CDS |
| TTCCACTGCCACCAACAATC+AGG | 0.481194 | 5_4:-35398011 | Msa0849100:intron |
| ATATTATATCTGTCATAGAT+AGG | 0.482146 | 5_4:-35397461 | Msa0849100:intron |
| TCTTATGACAATTACCATCA+TGG | 0.483049 | 5_4:-35398038 | Msa0849100:exon |
| ATGAAACTAAAAGATGTAAA+GGG | 0.483111 | 5_4:+35393531 | None:intergenic |
| GATTTCATTATGGAGTTAGC+CGG | 0.484194 | 5_4:+35395354 | None:intergenic |
| GTGTTGGGACTGCTCTTGGA+TGG | 0.484196 | 5_4:-35397644 | Msa0849100:CDS |
| GCATGGCAACGTTACAATCA+TGG | 0.485605 | 5_4:-35398357 | Msa0849100:five_prime_UTR |
| ACGTTGCCATGCGCCATCTT+GGG | 0.486695 | 5_4:+35398368 | None:intergenic |
| AGCTCCTATGTTGAAGTCGC+TGG | 0.491841 | 5_4:+35393685 | None:intergenic |
| TGCTATTAGGACACTGCGAT+GGG | 0.492171 | 5_4:-35395271 | Msa0849100:CDS |
| TGGATCTACATCTATGCTCA+TGG | 0.499343 | 5_4:-35394681 | Msa0849100:CDS |
| AACATAGGAGCTCGCGTGCA+AGG | 0.501996 | 5_4:-35393674 | Msa0849100:CDS |
| GAAAATGTGTTTGATGTTGA+GGG | 0.502240 | 5_4:-35393456 | Msa0849100:three_prime_UTR |
| ACCCATTATTGATTCAGAGA+TGG | 0.503313 | 5_4:-35393746 | Msa0849100:CDS |
| CAGCCTCATTCTCCATGAAC+CGG | 0.504266 | 5_4:+35397709 | None:intergenic |
| TGGCCACTCTATGCTGTCGC+TGG | 0.505383 | 5_4:-35397669 | Msa0849100:CDS |
| AGAAAATGTGTTTGATGTTG+AGG | 0.508848 | 5_4:-35393457 | Msa0849100:three_prime_UTR |
| GGCTGTCATGCTCTTATGGA+TGG | 0.510990 | 5_4:-35395691 | Msa0849100:CDS |
| GAGTCTCCACAAGATGGAAA+AGG | 0.511964 | 5_4:+35395085 | None:intergenic |
| CAGGGAATGTATAGGAAAAG+TGG | 0.517214 | 5_4:-35397903 | Msa0849100:CDS |
| CGGTTCATGGAGAATGAGGC+TGG | 0.519033 | 5_4:-35397708 | Msa0849100:CDS |
| TCTGCAAAAGGCTGTTAAGA+TGG | 0.525636 | 5_4:-35395757 | Msa0849100:CDS |
| TTGCTATTATGCATGTATGC+AGG | 0.526344 | 5_4:-35395493 | Msa0849100:CDS |
| CATCAGTGAAGTGGTGAACA+TGG | 0.529486 | 5_4:-35397871 | Msa0849100:CDS |
| CCGTTCTGCAAGAGATGCCT+GGG | 0.531018 | 5_4:-35394855 | Msa0849100:CDS |
| AAAAGGCTGTTAAGATGGTA+TGG | 0.531876 | 5_4:-35395752 | Msa0849100:CDS |
| TATGCGACTCTCATAACCTC+TGG | 0.532254 | 5_4:+35395723 | None:intergenic |
| ACTTTCATATAGCAACAAGT+TGG | 0.533973 | 5_4:-35393483 | Msa0849100:three_prime_UTR |
| AAGTCGCTGGTGCAATGTCT+CGG | 0.544589 | 5_4:+35393698 | None:intergenic |
| CTGGGAGTTATTTCAATCAA+CGG | 0.546389 | 5_4:-35394837 | Msa0849100:CDS |
| CTGCTATTAGGACACTGCGA+TGG | 0.551628 | 5_4:-35395272 | Msa0849100:CDS |
| ACTTAGTACCTGATTGTTGG+TGG | 0.551958 | 5_4:+35398003 | None:intergenic |
| ACTGATCACAGCAAGATAAG+TGG | 0.552209 | 5_4:+35397557 | None:intergenic |
| TGCTCTTATGGATGGCATTG+TGG | 0.555214 | 5_4:-35395683 | Msa0849100:CDS |
| TGCACCAGCGACTTCAACAT+AGG | 0.555754 | 5_4:-35393689 | Msa0849100:CDS |
| TGGACGCTGGTGGCTTCTTG+TGG | 0.560110 | 5_4:-35395616 | Msa0849100:CDS |
| ATGCCAAATCATCACCACTT+AGG | 0.560450 | 5_4:-35398314 | Msa0849100:five_prime_UTR |
| TGACAAGAGTCTCCACAAGA+TGG | 0.562607 | 5_4:+35395079 | None:intergenic |
| GCATGGGCGACGGTGGACGC+TGG | 0.570520 | 5_4:-35395629 | Msa0849100:CDS |
| GCGCGCAATCCAGATGATGA+AGG | 0.572957 | 5_4:-35397598 | Msa0849100:CDS |
| AACGGGAGTTGAAGCACTTG+TGG | 0.573101 | 5_4:-35394819 | Msa0849100:CDS |
| TACGAGTATCAAGGTGATCG+TGG | 0.574364 | 5_4:+35393640 | None:intergenic |
| CAGTACATGTCATAGTGTCT+GGG | 0.574385 | 5_4:-35395425 | Msa0849100:CDS |
| TAACAAGTATGCGTATGTCC+AGG | 0.584550 | 5_4:-35395049 | Msa0849100:intron |
| GGATCTACATCTATGCTCAT+GGG | 0.586213 | 5_4:-35394680 | Msa0849100:CDS |
| GTGATCCAATTGATTGGCGT+GGG | 0.586216 | 5_4:-35397804 | Msa0849100:CDS |
| GATGACAACACAACCCAAGA+TGG | 0.586305 | 5_4:-35398381 | Msa0849100:five_prime_UTR |
| ACATAGGAGCTCGCGTGCAA+GGG | 0.586817 | 5_4:-35393673 | Msa0849100:CDS |
| CCACTCTATGCTGTCGCTGG+CGG | 0.588986 | 5_4:-35397666 | Msa0849100:CDS |
| TGGTGTTGTAGCTTCAAGCA+TGG | 0.591952 | 5_4:-35395646 | Msa0849100:CDS |
| TGGGCGACGGTGGACGCTGG+TGG | 0.593945 | 5_4:-35395626 | Msa0849100:CDS |
| TTTCTGGTATACGAGTATCA+AGG | 0.594632 | 5_4:+35393631 | None:intergenic |
| TGTGATCCAATTGATTGGCG+TGG | 0.597398 | 5_4:-35397805 | Msa0849100:CDS |
| GCTTCAAGCATGGGCGACGG+TGG | 0.598835 | 5_4:-35395636 | Msa0849100:CDS |
| CCCAGGCATCTCTTGCAGAA+CGG | 0.598895 | 5_4:+35394855 | None:intergenic |
| GTACCGGTTCATGGAGAATG+AGG | 0.606474 | 5_4:-35397712 | Msa0849100:CDS |
| TGGAGCGGCAATGGTTGTGG+TGG | 0.610073 | 5_4:-35393808 | Msa0849100:CDS |
| CATCAACTAACTTTAAAATG+GGG | 0.611406 | 5_4:+35398400 | None:intergenic |
| ATCCATATATATCTGTTATG+CGG | 0.615901 | 5_4:-35393772 | Msa0849100:CDS |
| GGTGTTGTAGCTTCAAGCAT+GGG | 0.620790 | 5_4:-35395645 | Msa0849100:CDS |
| GTAGCTTCAAGCATGGGCGA+CGG | 0.622366 | 5_4:-35395639 | Msa0849100:CDS |
| ACGAGTATCAAGGTGATCGT+GGG | 0.622833 | 5_4:+35393641 | None:intergenic |
| ACATTGATAAGTACACGTAC+CGG | 0.624419 | 5_4:-35397728 | Msa0849100:CDS |
| CGTTGATTGAAATAACTCCC+AGG | 0.625002 | 5_4:+35394838 | None:intergenic |
| CAACAACAACATCAGTGAAG+TGG | 0.626519 | 5_4:-35397880 | Msa0849100:CDS |
| AACAGAGAGAGATTCCTAAG+TGG | 0.627263 | 5_4:+35398300 | None:intergenic |
| ACACAACCCAAGATGGCGCA+TGG | 0.628515 | 5_4:-35398374 | Msa0849100:five_prime_UTR |
| AAGGGTTGACATATATATCG+TGG | 0.633356 | 5_4:+35393549 | None:intergenic |
| GAATGAGGCTGGTTTGACAG+AGG | 0.635745 | 5_4:-35397697 | Msa0849100:CDS |
| CCGCCAGCGACAGCATAGAG+TGG | 0.641977 | 5_4:+35397666 | None:intergenic |
| AACGTTACAATCATGGCGCG+TGG | 0.643009 | 5_4:-35398350 | Msa0849100:five_prime_UTR |
| TAGTATTCATGGTGGTTGCG+AGG | 0.647672 | 5_4:-35395388 | Msa0849100:CDS |
| TATTAGGACACTGCGATGGG+AGG | 0.654899 | 5_4:-35395268 | Msa0849100:intron |
| GATGGTATGGAATCTTCCAG+AGG | 0.689240 | 5_4:-35395739 | Msa0849100:CDS |
| GGCAGTGGAAGAATCCATGA+TGG | 0.691125 | 5_4:+35398024 | None:intergenic |
| TGTTAACGCCAAGAATCACA+AGG | 0.715028 | 5_4:+35397775 | None:intergenic |
| ATTCGTGTTAGTATTCATGG+TGG | 0.726151 | 5_4:-35395396 | Msa0849100:CDS |
| TCCAAAATAAGCTTACAGAG+AGG | 0.749623 | 5_4:+35395469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTGTAGAATAATTT+TGG | + | chr5_4:35395599-35395618 | None:intergenic | 10.0% |
| !! | ATTATTCTACAATATATATT+TGG | - | chr5_4:35395601-35395620 | Msa0849100:CDS | 10.0% |
| !!! | TTTGCTTTATATAATTATTT+TGG | - | chr5_4:35395922-35395941 | Msa0849100:intron | 10.0% |
| !! | TAATAATTTCTTTCAATTAA+TGG | + | chr5_4:35397520-35397539 | None:intergenic | 10.0% |
| !! | TTTAAGTAAACAAATTAAAC+AGG | + | chr5_4:35394957-35394976 | None:intergenic | 15.0% |
| !! | AATAAATCAATTCATGTATT+GGG | + | chr5_4:35395119-35395138 | None:intergenic | 15.0% |
| !! | TAATAAATCAATTCATGTAT+TGG | + | chr5_4:35395120-35395139 | None:intergenic | 15.0% |
| !! | ATTATATAAAGCAAATAGAA+GGG | + | chr5_4:35395917-35395936 | None:intergenic | 15.0% |
| !! | AATTATATAAAGCAAATAGA+AGG | + | chr5_4:35395918-35395937 | None:intergenic | 15.0% |
| !! | TCAAAAGTAATAAAAAATCA+AGG | + | chr5_4:35397140-35397159 | None:intergenic | 15.0% |
| !! | GATTAAATAATTAGATAATG+TGG | - | chr5_4:35397494-35397513 | Msa0849100:CDS | 15.0% |
| !!! | TCATCAACTAACTTTAAAAT+GGG | + | chr5_4:35393373-35393392 | None:intergenic | 20.0% |
| !! | ATATTATATCTGTCATAGAT+AGG | - | chr5_4:35394308-35394327 | Msa0849100:intron | 20.0% |
| !!! | ATTGATGTTATTTTAAGCAT+TGG | - | chr5_4:35394399-35394418 | Msa0849100:intron | 20.0% |
| !! | AATTAAATGGAAATAGCATA+TGG | - | chr5_4:35394627-35394646 | Msa0849100:intron | 20.0% |
| !!! | CAAATTTTAAAGAACAAGAA+AGG | + | chr5_4:35394759-35394778 | None:intergenic | 20.0% |
| !! | TAAATAGTTAATCTAATGAG+AGG | - | chr5_4:35394876-35394895 | Msa0849100:CDS | 20.0% |
| !! | AAATTAAACAGGTTAAATCA+AGG | + | chr5_4:35394946-35394965 | None:intergenic | 20.0% |
| !! | GTTGTACTTAGATATAAATT+AGG | - | chr5_4:35395312-35395331 | Msa0849100:CDS | 20.0% |
| !!! | TTTTAAATGAAACTTCTTAC+AGG | + | chr5_4:35395355-35395374 | None:intergenic | 20.0% |
| !!! | TAATAACTTTAGGTTTTGTT+TGG | - | chr5_4:35395403-35395422 | Msa0849100:CDS | 20.0% |
| !!! | AATAACTTTAGGTTTTGTTT+GGG | - | chr5_4:35395404-35395423 | Msa0849100:CDS | 20.0% |
| !!! | TTTAGAGTATTATAACAACA+TGG | - | chr5_4:35395544-35395563 | Msa0849100:CDS | 20.0% |
| !!! | TATTGTAGAATAATTTTGGA+GGG | + | chr5_4:35395595-35395614 | None:intergenic | 20.0% |
| !!! | ATATTGTAGAATAATTTTGG+AGG | + | chr5_4:35395596-35395615 | None:intergenic | 20.0% |
| !! | TTACCATTTAATAAAATTCG+CGG | - | chr5_4:35395789-35395808 | Msa0849100:intron | 20.0% |
| !! | ATACTGTAAAGATTTCATTA+TGG | + | chr5_4:35396428-35396447 | None:intergenic | 20.0% |
| !! | AAAGTAATAAAAAATCAAGG+AGG | + | chr5_4:35397137-35397156 | None:intergenic | 20.0% |
| !! | TTAAAAGTAGATAGAGTTTA+AGG | - | chr5_4:35397545-35397564 | Msa0849100:CDS | 20.0% |
| !!! | GTAAAACATTTTTATGTTGT+AGG | - | chr5_4:35397682-35397701 | Msa0849100:CDS | 20.0% |
| !! | CTTCTCTAAATTTAGATATT+AGG | + | chr5_4:35397761-35397780 | None:intergenic | 20.0% |
| !! | ATGAAACTAAAAGATGTAAA+GGG | + | chr5_4:35398241-35398260 | None:intergenic | 20.0% |
| !! | AATGAAACTAAAAGATGTAA+AGG | + | chr5_4:35398242-35398261 | None:intergenic | 20.0% |
| !!! | CATCAACTAACTTTAAAATG+GGG | + | chr5_4:35393372-35393391 | None:intergenic | 25.0% |
| !! | GTCATCAACTAACTTTAAAA+TGG | + | chr5_4:35393374-35393393 | None:intergenic | 25.0% |
| ! | ACGAAAATAGATTAGATAGA+AGG | + | chr5_4:35393534-35393553 | None:intergenic | 25.0% |
| ! | TTGAATGTGAGAAAAGAAAA+AGG | + | chr5_4:35393619-35393638 | None:intergenic | 25.0% |
| !!! | AACAAACCCACAATTTTTTT+AGG | - | chr5_4:35393809-35393828 | Msa0849100:CDS | 25.0% |
| ! | TCAGATCCTAAAAAAATTGT+GGG | + | chr5_4:35393818-35393837 | None:intergenic | 25.0% |
| ! | CATAAAATGTAGTCTAAGAA+AGG | + | chr5_4:35394345-35394364 | None:intergenic | 25.0% |
| ! | AGAAAACAACATCAAATCAA+AGG | + | chr5_4:35394371-35394390 | None:intergenic | 25.0% |
| ! | AACTTGTGAAAGATCATATA+AGG | - | chr5_4:35394585-35394604 | Msa0849100:intron | 25.0% |
| !! | CATAGCTTGTAGAAATTAAA+TGG | - | chr5_4:35394614-35394633 | Msa0849100:intron | 25.0% |
| ! | GAAATTGAAAGGATTGTATT+AGG | + | chr5_4:35395067-35395086 | None:intergenic | 25.0% |
| !! | CATTTTATGTTGTTAGCTAA+TGG | - | chr5_4:35395282-35395301 | Msa0849100:CDS | 25.0% |
| ! | ATACAAAATTCCCCTAATTT+GGG | + | chr5_4:35395633-35395652 | None:intergenic | 25.0% |
| ! | AATACAAAATTCCCCTAATT+TGG | + | chr5_4:35395634-35395653 | None:intergenic | 25.0% |
| !! | TATGCTTTAACAACATCTTT+TGG | - | chr5_4:35396445-35396464 | Msa0849100:intron | 25.0% |
| !! | TAACAATAGAGAGAGATTTT+GGG | - | chr5_4:35397163-35397182 | Msa0849100:intron | 25.0% |
| ! | AAAGAGAATAAATCAAATGC+AGG | - | chr5_4:35397267-35397286 | Msa0849100:intron | 25.0% |
| ! | AAGAGAATAAATCAAATGCA+GGG | - | chr5_4:35397268-35397287 | Msa0849100:intron | 25.0% |
| ! | AGTTCTCTTGTAATATTTCT+AGG | + | chr5_4:35397322-35397341 | None:intergenic | 25.0% |
| ! | AATATTACAAGAGAACTACT+AGG | - | chr5_4:35397325-35397344 | Msa0849100:intron | 25.0% |
| ! | TATCCAACTCATTAATCTTT+AGG | + | chr5_4:35397356-35397375 | None:intergenic | 25.0% |
| ! | AGATACGATATAGATTATCA+TGG | - | chr5_4:35397377-35397396 | Msa0849100:intron | 25.0% |
| ! | AATTGCATCAATGTAAGATA+TGG | + | chr5_4:35397604-35397623 | None:intergenic | 25.0% |
| ! | AAATTTAGATATTAGGACGT+CGG | + | chr5_4:35397754-35397773 | None:intergenic | 25.0% |
| ! | GATATAACGCATACTTAATA+TGG | + | chr5_4:35397861-35397880 | None:intergenic | 25.0% |
| ! | ATCCATATATATCTGTTATG+CGG | - | chr5_4:35397997-35398016 | Msa0849100:intron | 25.0% |
| ! | TTTAGTGATTCCTCAAATTT+AGG | + | chr5_4:35398167-35398186 | None:intergenic | 25.0% |
| ! | AAATTTGAGGAATCACTAAA+TGG | - | chr5_4:35398167-35398186 | Msa0849100:five_prime_UTR | 25.0% |
| ! | CTATTATTCGTTACAGCTTT+TGG | - | chr5_4:35393593-35393612 | Msa0849100:three_prime_UTR | 30.0% |
| GAGATGAAGTAGGAATAAAA+AGG | + | chr5_4:35393656-35393675 | None:intergenic | 30.0% | |
| TCTTATGACAATTACCATCA+TGG | - | chr5_4:35393731-35393750 | Msa0849100:CDS | 30.0% | |
| TTAACTTAGTACCTGATTGT+TGG | + | chr5_4:35393772-35393791 | None:intergenic | 30.0% | |
| CTCAGATCCTAAAAAAATTG+TGG | + | chr5_4:35393819-35393838 | None:intergenic | 30.0% | |
| TAGGATCTGAGTATATCATA+TGG | - | chr5_4:35393828-35393847 | Msa0849100:intron | 30.0% | |
| ! | ATGGATTTTTGACAATATGC+AGG | - | chr5_4:35393847-35393866 | Msa0849100:intron | 30.0% |
| ! | TGGATTTTTGACAATATGCA+GGG | - | chr5_4:35393848-35393867 | Msa0849100:intron | 30.0% |
| CTATTTGTGATCCAATTGAT+TGG | - | chr5_4:35393959-35393978 | Msa0849100:intron | 30.0% | |
| CAAGATAAGTGGTAAGAATA+TGG | + | chr5_4:35394204-35394223 | None:intergenic | 30.0% | |
| ACATGTTCTCATAACTCTTA+AGG | + | chr5_4:35394446-35394465 | None:intergenic | 30.0% | |
| AATTTCATGTTCGCACAAAA+GGG | + | chr5_4:35394800-35394819 | None:intergenic | 30.0% | |
| ACAAACGTAATGTTCATCTT+CGG | - | chr5_4:35394987-35395006 | Msa0849100:intron | 30.0% | |
| TAGGTGAGCTCTTAAAATAT+TGG | + | chr5_4:35395024-35395043 | None:intergenic | 30.0% | |
| GTATTAGGAGGACAAATAAT+AGG | + | chr5_4:35395052-35395071 | None:intergenic | 30.0% | |
| ATTGAAAGGATTGTATTAGG+AGG | + | chr5_4:35395064-35395083 | None:intergenic | 30.0% | |
| !! | AGATTCTCTCTGAAATTGAA+AGG | + | chr5_4:35395078-35395097 | None:intergenic | 30.0% |
| GAAAATGAGAGTCATAATAC+AGG | + | chr5_4:35395233-35395252 | None:intergenic | 30.0% | |
| CTAACAACATAAAATGACCT+AGG | + | chr5_4:35395278-35395297 | None:intergenic | 30.0% | |
| AGGTCTATGGTAATAACTTT+AGG | - | chr5_4:35395393-35395412 | Msa0849100:CDS | 30.0% | |
| AATTGCTCTATCAAATAAGG+TGG | + | chr5_4:35395478-35395497 | None:intergenic | 30.0% | |
| ! | CCTTATTTGATAGAGCAATT+CGG | - | chr5_4:35395478-35395497 | Msa0849100:CDS | 30.0% |
| TACAAAATTCCCCTAATTTG+GGG | + | chr5_4:35395632-35395651 | None:intergenic | 30.0% | |
| ! | ATGCCGCGAATTTTATTAAA+TGG | + | chr5_4:35395795-35395814 | None:intergenic | 30.0% |
| ATTTAATAAAATTCGCGGCA+TGG | - | chr5_4:35395794-35395813 | Msa0849100:intron | 30.0% | |
| ! | GCATGGATACTTTCATTTTA+TGG | - | chr5_4:35395811-35395830 | Msa0849100:intron | 30.0% |
| ! | ACTTTCATTTTATGGCAGAT+CGG | - | chr5_4:35395819-35395838 | Msa0849100:intron | 30.0% |
| !! | TTGGTCATTAAGTTGATTTC+TGG | - | chr5_4:35395941-35395960 | Msa0849100:intron | 30.0% |
| TTAGCTTATGCTTATCTCAT+TGG | - | chr5_4:35396250-35396269 | Msa0849100:intron | 30.0% | |
| ! | TTTGATTCGTTTCAGATAAG+AGG | - | chr5_4:35396610-35396629 | Msa0849100:intron | 30.0% |
| ! | GTTTTCTGATTTCAATTTCC+AGG | + | chr5_4:35396832-35396851 | None:intergenic | 30.0% |
| ! | AGTGATAGAGCTTTTATGAT+TGG | - | chr5_4:35397068-35397087 | Msa0849100:intron | 30.0% |
| CAAAATCTCTCTCTATTGTT+AGG | + | chr5_4:35397164-35397183 | None:intergenic | 30.0% | |
| ! | CTAACAATAGAGAGAGATTT+TGG | - | chr5_4:35397162-35397181 | Msa0849100:intron | 30.0% |
| ! | AACAATAGAGAGAGATTTTG+GGG | - | chr5_4:35397164-35397183 | Msa0849100:intron | 30.0% |
| AGACCTAAAGATTAATGAGT+TGG | - | chr5_4:35397350-35397369 | Msa0849100:intron | 30.0% | |
| ATGTTACCAACTACTAAGTA+GGG | + | chr5_4:35397421-35397440 | None:intergenic | 30.0% | |
| TATGTTACCAACTACTAAGT+AGG | + | chr5_4:35397422-35397441 | None:intergenic | 30.0% | |
| ! | ATTCTCACTGTAAAGGTTTT+AGG | + | chr5_4:35397641-35397660 | None:intergenic | 30.0% |
| ATATCTCATTCTCACTGTAA+AGG | + | chr5_4:35397648-35397667 | None:intergenic | 30.0% | |
| TTTACAGTGAGAATGAGATA+TGG | - | chr5_4:35397647-35397666 | Msa0849100:CDS | 30.0% | |
| ! | ATTTTTATGTTGTAGGTGCA+TGG | - | chr5_4:35397689-35397708 | Msa0849100:CDS | 30.0% |
| GTGATGTGTAAATGGAATTT+GGG | + | chr5_4:35397789-35397808 | None:intergenic | 30.0% | |
| TGTGATGTGTAAATGGAATT+TGG | + | chr5_4:35397790-35397809 | None:intergenic | 30.0% | |
| !!! | TGACATGTGAATTTTTAGGT+TGG | - | chr5_4:35397941-35397960 | Msa0849100:intron | 30.0% |
| TTCCGCATAACAGATATATA+TGG | + | chr5_4:35398002-35398021 | None:intergenic | 30.0% | |
| AAATCTGGTTGAAAAACTCA+TGG | + | chr5_4:35398051-35398070 | None:intergenic | 30.0% | |
| ACTTTCATATAGCAACAAGT+TGG | - | chr5_4:35398286-35398305 | Msa0849100:five_prime_UTR | 30.0% | |
| AGAAAATGTGTTTGATGTTG+AGG | - | chr5_4:35398312-35398331 | Msa0849100:five_prime_UTR | 30.0% | |
| GAAAATGTGTTTGATGTTGA+GGG | - | chr5_4:35398313-35398332 | Msa0849100:five_prime_UTR | 30.0% | |
| !! | TAGTAGCTTTGAGCTATATT+GGG | - | chr5_4:35398336-35398355 | Msa0849100:five_prime_UTR | 30.0% |
| CTAACAAGATGCATCAAATA+TGG | - | chr5_4:35398363-35398382 | Msa0849100:five_prime_UTR | 30.0% | |
| ! | ATTCCTAAGTGGTGATGATT+TGG | + | chr5_4:35393461-35393480 | None:intergenic | 35.0% |
| ACAATATGCAGGGAATGTAT+AGG | - | chr5_4:35393858-35393877 | Msa0849100:intron | 35.0% | |
| ACAGGTTCAAGAAAAAGAAC+AGG | - | chr5_4:35394014-35394033 | Msa0849100:intron | 35.0% | |
| ACATTGATAAGTACACGTAC+CGG | - | chr5_4:35394041-35394060 | Msa0849100:intron | 35.0% | |
| ! | TGATCAGTGTTTTGTGTTTC+TGG | - | chr5_4:35394227-35394246 | Msa0849100:intron | 35.0% |
| ! | GATCAGTGTTTTGTGTTTCT+GGG | - | chr5_4:35394228-35394247 | Msa0849100:intron | 35.0% |
| !!! | TACGTACTTTTGAGACTGTT+TGG | + | chr5_4:35394683-35394702 | None:intergenic | 35.0% |
| CAAGAAAGGTAATCAATCTC+AGG | + | chr5_4:35394745-35394764 | None:intergenic | 35.0% | |
| CAATTTCATGTTCGCACAAA+AGG | + | chr5_4:35394801-35394820 | None:intergenic | 35.0% | |
| CAAACGTAATGTTCATCTTC+GGG | - | chr5_4:35394988-35395007 | Msa0849100:intron | 35.0% | |
| GGACAAATAATAGGATAGGT+AGG | + | chr5_4:35395043-35395062 | None:intergenic | 35.0% | |
| AGGAGGACAAATAATAGGAT+AGG | + | chr5_4:35395047-35395066 | None:intergenic | 35.0% | |
| ATTCATGTATTGGGAACTCA+CGG | + | chr5_4:35395110-35395129 | None:intergenic | 35.0% | |
| TCAGCGATTCAATTACTTTG+AGG | - | chr5_4:35395251-35395270 | Msa0849100:intron | 35.0% | |
| ! | TTCAATTACTTTGAGGACCT+AGG | - | chr5_4:35395258-35395277 | Msa0849100:intron | 35.0% |
| AATATCACAGATCGTCAATC+AGG | - | chr5_4:35395373-35395392 | Msa0849100:CDS | 35.0% | |
| !!! | TTAGGTTTTGTTTGGGAGTT+TGG | - | chr5_4:35395411-35395430 | Msa0849100:CDS | 35.0% |
| CCGAATTGCTCTATCAAATA+AGG | + | chr5_4:35395481-35395500 | None:intergenic | 35.0% | |
| !! | TAGAATAATTTTGGAGGGCT+TGG | + | chr5_4:35395590-35395609 | None:intergenic | 35.0% |
| ACAAAATTCCCCTAATTTGG+GGG | + | chr5_4:35395631-35395650 | None:intergenic | 35.0% | |
| AAGCAAATAGAAGGGAATGA+AGG | + | chr5_4:35395909-35395928 | None:intergenic | 35.0% | |
| !! | GTCATTAAGTTGATTTCTGG+TGG | - | chr5_4:35395944-35395963 | Msa0849100:intron | 35.0% |
| CAACATTGTAAATGGAAGTC+TGG | + | chr5_4:35395990-35396009 | None:intergenic | 35.0% | |
| CAGACTTCCATTTACAATGT+TGG | - | chr5_4:35395988-35396007 | Msa0849100:intron | 35.0% | |
| TGCAGAACCAACATTGTAAA+TGG | + | chr5_4:35395998-35396017 | None:intergenic | 35.0% | |
| !! | TACAATGTTGGTTCTGCAAA+AGG | - | chr5_4:35396000-35396019 | Msa0849100:intron | 35.0% |
| AAAAGGCTGTTAAGATGGTA+TGG | - | chr5_4:35396017-35396036 | Msa0849100:intron | 35.0% | |
| TTCATTCTGTCTGTTCTTGT+TGG | - | chr5_4:35396196-35396215 | Msa0849100:intron | 35.0% | |
| ! | TTGGATTCGTTGGTTACATA+CGG | - | chr5_4:35396215-35396234 | Msa0849100:intron | 35.0% |
| ! | TTGCTATTATGCATGTATGC+AGG | - | chr5_4:35396276-35396295 | Msa0849100:intron | 35.0% |
| ! | TCCTCTCTGTAAGCTTATTT+TGG | - | chr5_4:35396299-35396318 | Msa0849100:intron | 35.0% |
| TCCAAAATAAGCTTACAGAG+AGG | + | chr5_4:35396303-35396322 | None:intergenic | 35.0% | |
| !!! | CTCTGTAAGCTTATTTTGGA+CGG | - | chr5_4:35396303-35396322 | Msa0849100:intron | 35.0% |
| !!! | TCTGTAAGCTTATTTTGGAC+GGG | - | chr5_4:35396304-35396323 | Msa0849100:intron | 35.0% |
| ! | CTGATTCGTGTTAGTATTCA+TGG | - | chr5_4:35396370-35396389 | Msa0849100:intron | 35.0% |
| ATTCGTGTTAGTATTCATGG+TGG | - | chr5_4:35396373-35396392 | Msa0849100:intron | 35.0% | |
| GATTTCATTATGGAGTTAGC+CGG | + | chr5_4:35396418-35396437 | None:intergenic | 35.0% | |
| !! | TCTTTTGGCAGCATTTGTTA+TGG | - | chr5_4:35396460-35396479 | Msa0849100:intron | 35.0% |
| CATGAGAGATGAATACGTAA+AGG | + | chr5_4:35396575-35396594 | None:intergenic | 35.0% | |
| ! | TGATTTCCTTTTCCATCTTG+TGG | - | chr5_4:35396678-35396697 | Msa0849100:intron | 35.0% |
| TGATTGTTGAGATGCACAAT+GGG | + | chr5_4:35396749-35396768 | None:intergenic | 35.0% | |
| TTGATTGTTGAGATGCACAA+TGG | + | chr5_4:35396750-35396769 | None:intergenic | 35.0% | |
| CCATAAACACCAATCTTCAA+AGG | + | chr5_4:35396882-35396901 | None:intergenic | 35.0% | |
| ! | CCTTTGAAGATTGGTGTTTA+TGG | - | chr5_4:35396879-35396898 | Msa0849100:intron | 35.0% |
| ! | CTGGGAGTTATTTCAATCAA+CGG | - | chr5_4:35396932-35396951 | Msa0849100:intron | 35.0% |
| ! | TGGGAGTTATTTCAATCAAC+GGG | - | chr5_4:35396933-35396952 | Msa0849100:intron | 35.0% |
| ! | CTGTTAATGGGAACCATTTT+AGG | - | chr5_4:35396996-35397015 | Msa0849100:intron | 35.0% |
| ! | TTAATGGGAACCATTTTAGG+TGG | - | chr5_4:35396999-35397018 | Msa0849100:intron | 35.0% |
| !! | TAATGGGAACCATTTTAGGT+GGG | - | chr5_4:35397000-35397019 | Msa0849100:intron | 35.0% |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr5_4:35397188-35397207 | Msa0849100:intron | 35.0% | |
| ACCTATTGTAGAAAAGATGG+TGG | - | chr5_4:35397191-35397210 | Msa0849100:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACAAT+AGG | + | chr5_4:35397195-35397214 | None:intergenic | 35.0% |
| CAGGGTAATGAAATTGTTAG+AGG | - | chr5_4:35397286-35397305 | Msa0849100:intron | 35.0% | |
| AATGAAATTGTTAGAGGCAG+AGG | - | chr5_4:35397292-35397311 | Msa0849100:intron | 35.0% | |
| TGTTACCAACTACTAAGTAG+GGG | + | chr5_4:35397420-35397439 | None:intergenic | 35.0% | |
| CTTTATATGAGCCAATTCCA+TGG | + | chr5_4:35397466-35397485 | None:intergenic | 35.0% | |
| ! | GAATTGGCTCATATAAAGTG+AGG | - | chr5_4:35397468-35397487 | Msa0849100:CDS | 35.0% |
| CCTAAGATGTGATGTGTAAA+TGG | + | chr5_4:35397797-35397816 | None:intergenic | 35.0% | |
| CCATTTACACATCACATCTT+AGG | - | chr5_4:35397794-35397813 | Msa0849100:CDS | 35.0% | |
| GTTCATTTCCATCACATCTT+AGG | - | chr5_4:35397816-35397835 | Msa0849100:CDS | 35.0% | |
| ! | GGCATGACATGTGAATTTTT+AGG | - | chr5_4:35397937-35397956 | Msa0849100:intron | 35.0% |
| !!! | TGTGAATTTTTAGGTTGGAG+CGG | - | chr5_4:35397946-35397965 | Msa0849100:intron | 35.0% |
| !! | ACCCATTATTGATTCAGAGA+TGG | - | chr5_4:35398023-35398042 | Msa0849100:CDS | 35.0% |
| CCCATCTCTGAATCAATAAT+GGG | + | chr5_4:35398027-35398046 | None:intergenic | 35.0% | |
| !! | CCCATTATTGATTCAGAGAT+GGG | - | chr5_4:35398024-35398043 | Msa0849100:CDS | 35.0% |
| TCCCATCTCTGAATCAATAA+TGG | + | chr5_4:35398028-35398047 | None:intergenic | 35.0% | |
| ! | TTTCTGGTATACGAGTATCA+AGG | + | chr5_4:35398141-35398160 | None:intergenic | 35.0% |
| AAGGGTTGACATATATATCG+TGG | + | chr5_4:35398223-35398242 | None:intergenic | 35.0% | |
| !! | GTAGTAGCTTTGAGCTATAT+TGG | - | chr5_4:35398335-35398354 | Msa0849100:five_prime_UTR | 35.0% |
| ATGCCAAATCATCACCACTT+AGG | - | chr5_4:35393455-35393474 | Msa0849100:three_prime_UTR | 40.0% | |
| AACAGAGAGAGATTCCTAAG+TGG | + | chr5_4:35393472-35393491 | None:intergenic | 40.0% | |
| !! | AAAAGCATTGCACAGCTTGT+TGG | + | chr5_4:35393706-35393725 | None:intergenic | 40.0% |
| ACTTAGTACCTGATTGTTGG+TGG | + | chr5_4:35393769-35393788 | None:intergenic | 40.0% | |
| CAGGGAATGTATAGGAAAAG+TGG | - | chr5_4:35393866-35393885 | Msa0849100:intron | 40.0% | |
| CAACAACAACATCAGTGAAG+TGG | - | chr5_4:35393889-35393908 | Msa0849100:intron | 40.0% | |
| TGGTGAACATGGAGCAAAAA+AGG | - | chr5_4:35393909-35393928 | Msa0849100:intron | 40.0% | |
| !! | GGTTTTGTCCTTGTGATTCT+TGG | - | chr5_4:35393986-35394005 | Msa0849100:intron | 40.0% |
| TGTTAACGCCAAGAATCACA+AGG | + | chr5_4:35393997-35394016 | None:intergenic | 40.0% | |
| TTGTGATTCTTGGCGTTAAC+AGG | - | chr5_4:35393996-35394015 | Msa0849100:intron | 40.0% | |
| ACTGATCACAGCAAGATAAG+TGG | + | chr5_4:35394215-35394234 | None:intergenic | 40.0% | |
| !!! | CTTTTGAGACTGTTTGGAAG+AGG | + | chr5_4:35394677-35394696 | None:intergenic | 40.0% |
| ! | TGAGAGGTAGAGCTTTTAAG+AGG | - | chr5_4:35394892-35394911 | Msa0849100:intron | 40.0% |
| !!! | GTTTTGTTTGGGAGTTTGGA+GGG | - | chr5_4:35395415-35395434 | Msa0849100:CDS | 40.0% |
| !! | TTTTGTTTGGGAGTTTGGAG+GGG | - | chr5_4:35395416-35395435 | Msa0849100:CDS | 40.0% |
| CAAAATTCCCCTAATTTGGG+GGG | + | chr5_4:35395630-35395649 | None:intergenic | 40.0% | |
| !! | AAGTTGATTTCTGGTGGCTT+TGG | - | chr5_4:35395950-35395969 | Msa0849100:intron | 40.0% |
| TCTGCAAAAGGCTGTTAAGA+TGG | - | chr5_4:35396012-35396031 | Msa0849100:intron | 40.0% | |
| TTATGGCTGTCATGCTCTTA+TGG | - | chr5_4:35396074-35396093 | Msa0849100:intron | 40.0% | |
| TCTGTTCTTGTTGGATTCGT+TGG | - | chr5_4:35396205-35396224 | Msa0849100:intron | 40.0% | |
| ACAGTACATGTCATAGTGTC+TGG | - | chr5_4:35396343-35396362 | Msa0849100:intron | 40.0% | |
| CAGTACATGTCATAGTGTCT+GGG | - | chr5_4:35396344-35396363 | Msa0849100:intron | 40.0% | |
| CGTTATTCACAGCTGCTATT+AGG | - | chr5_4:35396485-35396504 | Msa0849100:intron | 40.0% | |
| CGTTTCAGATAAGAGGAATC+CGG | - | chr5_4:35396617-35396636 | Msa0849100:intron | 40.0% | |
| CATTCTTGCCTATCTTTGAC+CGG | + | chr5_4:35396639-35396658 | None:intergenic | 40.0% | |
| TAACAAGTATGCGTATGTCC+AGG | - | chr5_4:35396720-35396739 | Msa0849100:intron | 40.0% | |
| ! | GCTATTAGTTTACACTGTCC+TGG | - | chr5_4:35396811-35396830 | Msa0849100:intron | 40.0% |
| CACCAATCTTCAAAGGACAT+GGG | + | chr5_4:35396875-35396894 | None:intergenic | 40.0% | |
| ACACCAATCTTCAAAGGACA+TGG | + | chr5_4:35396876-35396895 | None:intergenic | 40.0% | |
| ! | CGTTGATTGAAATAACTCCC+AGG | + | chr5_4:35396934-35396953 | None:intergenic | 40.0% |
| AGTTATCAGCCCACCTAAAA+TGG | + | chr5_4:35397012-35397031 | None:intergenic | 40.0% | |
| !!! | ATTTTAGGTGGGCTGATAAC+TGG | - | chr5_4:35397011-35397030 | Msa0849100:intron | 40.0% |
| TGGATCTACATCTATGCTCA+TGG | - | chr5_4:35397088-35397107 | Msa0849100:intron | 40.0% | |
| GGATCTACATCTATGCTCAT+GGG | - | chr5_4:35397089-35397108 | Msa0849100:intron | 40.0% | |
| TATGCTCATGGGCATGATAT+TGG | - | chr5_4:35397100-35397119 | Msa0849100:intron | 40.0% | |
| GTTACCAACTACTAAGTAGG+GGG | + | chr5_4:35397419-35397438 | None:intergenic | 40.0% | |
| CTGTTTACCATCCATGGAAT+TGG | - | chr5_4:35397452-35397471 | Msa0849100:intron | 40.0% | |
| ATATGAGCCAATTCCATGGA+TGG | + | chr5_4:35397462-35397481 | None:intergenic | 40.0% | |
| GTGTAAATGGAATTTGGGCT+GGG | + | chr5_4:35397784-35397803 | None:intergenic | 40.0% | |
| TGTGTAAATGGAATTTGGGC+TGG | + | chr5_4:35397785-35397804 | None:intergenic | 40.0% | |
| CTGAATATGCATCCGAACAT+AGG | - | chr5_4:35397916-35397935 | Msa0849100:intron | 40.0% | |
| TCACATGTCATGCCTATGTT+CGG | + | chr5_4:35397931-35397950 | None:intergenic | 40.0% | |
| ! | CCTCAAATTTAGGCGTTTTC+TGG | + | chr5_4:35398157-35398176 | None:intergenic | 40.0% |
| CCAGAAAACGCCTAAATTTG+AGG | - | chr5_4:35398154-35398173 | Msa0849100:five_prime_UTR | 40.0% | |
| GATGACAACACAACCCAAGA+TGG | - | chr5_4:35393388-35393407 | Msa0849100:three_prime_UTR | 45.0% | |
| GCATGGCAACGTTACAATCA+TGG | - | chr5_4:35393412-35393431 | Msa0849100:three_prime_UTR | 45.0% | |
| GAGAGAGAGAGAGATGAAGT+AGG | + | chr5_4:35393666-35393685 | None:intergenic | 45.0% | |
| CATCAGTGAAGTGGTGAACA+TGG | - | chr5_4:35393898-35393917 | Msa0849100:intron | 45.0% | |
| ! | ACATGGAGCAAAAAAGGCGT+TGG | - | chr5_4:35393915-35393934 | Msa0849100:intron | 45.0% |
| TGTGATCCAATTGATTGGCG+TGG | - | chr5_4:35393964-35393983 | Msa0849100:intron | 45.0% | |
| GTGATCCAATTGATTGGCGT+GGG | - | chr5_4:35393965-35393984 | Msa0849100:intron | 45.0% | |
| CAAAACCCACGCCAATCAAT+TGG | + | chr5_4:35393973-35393992 | None:intergenic | 45.0% | |
| !! | TAAGTACACGTACCGGTTCA+TGG | - | chr5_4:35394048-35394067 | Msa0849100:intron | 45.0% |
| ! | CTGGTTTGACAGAGGATTAC+TGG | - | chr5_4:35394080-35394099 | Msa0849100:intron | 45.0% |
| ! | ATGGAGTTGGTTGTTGCTGT+TGG | - | chr5_4:35394144-35394163 | Msa0849100:intron | 45.0% |
| ! | TGGAGTTGGTTGTTGCTGTT+GGG | - | chr5_4:35394145-35394164 | Msa0849100:intron | 45.0% |
| AAGCAACACCCCAGAAAAAC+TGG | + | chr5_4:35394258-35394277 | None:intergenic | 45.0% | |
| !!! | TGGGGTGTTGCTTTTGCTAT+TGG | - | chr5_4:35394265-35394284 | Msa0849100:intron | 45.0% |
| TGAGACTGTTTGGAAGAGGT+TGG | + | chr5_4:35394673-35394692 | None:intergenic | 45.0% | |
| CAGATCGTCAATCAGGTCTA+TGG | - | chr5_4:35395380-35395399 | Msa0849100:CDS | 45.0% | |
| !!! | GGTTTTGTTTGGGAGTTTGG+AGG | - | chr5_4:35395414-35395433 | Msa0849100:CDS | 45.0% |
| TTTGTTTGGGAGTTTGGAGG+GGG | - | chr5_4:35395417-35395436 | Msa0849100:CDS | 45.0% | |
| ! | ATTTGGAGTCCCCCCAAATT+AGG | - | chr5_4:35395618-35395637 | Msa0849100:CDS | 45.0% |
| ! | TTTGGAGTCCCCCCAAATTA+GGG | - | chr5_4:35395619-35395638 | Msa0849100:CDS | 45.0% |
| AAAGAGAAGGAGGAAGTGGA+AGG | + | chr5_4:35395691-35395710 | None:intergenic | 45.0% | |
| !! | GATGGCTTTGGGAAAAGAGA+AGG | + | chr5_4:35395704-35395723 | None:intergenic | 45.0% |
| GAGACAGTTAGGGTCTGTTT+GGG | + | chr5_4:35395739-35395758 | None:intergenic | 45.0% | |
| AGAGACAGTTAGGGTCTGTT+TGG | + | chr5_4:35395740-35395759 | None:intergenic | 45.0% | |
| CCATGGAACAGAGACAGTTA+GGG | + | chr5_4:35395749-35395768 | None:intergenic | 45.0% | |
| TCCATGGAACAGAGACAGTT+AGG | + | chr5_4:35395750-35395769 | None:intergenic | 45.0% | |
| !! | GCTGTTTCTATGCATCTCCA+TGG | + | chr5_4:35395766-35395785 | None:intergenic | 45.0% |
| GATGGTATGGAATCTTCCAG+AGG | - | chr5_4:35396030-35396049 | Msa0849100:intron | 45.0% | |
| TATGCGACTCTCATAACCTC+TGG | + | chr5_4:35396049-35396068 | None:intergenic | 45.0% | |
| GAGAGTCGCATATGCGTTTA+TGG | - | chr5_4:35396057-35396076 | Msa0849100:intron | 45.0% | |
| TGCTCTTATGGATGGCATTG+TGG | - | chr5_4:35396086-35396105 | Msa0849100:intron | 45.0% | |
| TGGATGGCATTGTGGTCATT+TGG | - | chr5_4:35396094-35396113 | Msa0849100:intron | 45.0% | |
| !! | TGGTGTTGTAGCTTCAAGCA+TGG | - | chr5_4:35396123-35396142 | Msa0849100:intron | 45.0% |
| ! | GGTGTTGTAGCTTCAAGCAT+GGG | - | chr5_4:35396124-35396143 | Msa0849100:intron | 45.0% |
| TAGTATTCATGGTGGTTGCG+AGG | - | chr5_4:35396381-35396400 | Msa0849100:intron | 45.0% | |
| TGCTATTAGGACACTGCGAT+GGG | - | chr5_4:35396498-35396517 | Msa0849100:intron | 45.0% | |
| AGAGGAATCCGGTCAAAGAT+AGG | - | chr5_4:35396628-35396647 | Msa0849100:intron | 45.0% | |
| GAGTCTCCACAAGATGGAAA+AGG | + | chr5_4:35396687-35396706 | None:intergenic | 45.0% | |
| TGACAAGAGTCTCCACAAGA+TGG | + | chr5_4:35396693-35396712 | None:intergenic | 45.0% | |
| ATCTTGTGGAGACTCTTGTC+AGG | - | chr5_4:35396692-35396711 | Msa0849100:intron | 45.0% | |
| ! | CTCCCATGTCCTTTGAAGAT+TGG | - | chr5_4:35396870-35396889 | Msa0849100:intron | 45.0% |
| CTTGTGGCGTATGATTGTTC+AGG | - | chr5_4:35396966-35396985 | Msa0849100:intron | 45.0% | |
| ! | TTCAGGTGCTGTGCTGTTAA+TGG | - | chr5_4:35396983-35397002 | Msa0849100:intron | 45.0% |
| ! | TCAGGTGCTGTGCTGTTAAT+GGG | - | chr5_4:35396984-35397003 | Msa0849100:intron | 45.0% |
| ! | CTGATAACTGGAACTTGCTC+TGG | - | chr5_4:35397023-35397042 | Msa0849100:intron | 45.0% |
| ! | TGGAACTTGCTCTGGTGTTT+GGG | - | chr5_4:35397031-35397050 | Msa0849100:intron | 45.0% |
| GTGTTTGGGCATGGATGAAA+TGG | - | chr5_4:35397045-35397064 | Msa0849100:intron | 45.0% | |
| !! | AAGATGGTGGAAACTCGACT+TGG | - | chr5_4:35397204-35397223 | Msa0849100:intron | 45.0% |
| !! | AGATGGTGGAAACTCGACTT+GGG | - | chr5_4:35397205-35397224 | Msa0849100:intron | 45.0% |
| ! | TAGGGGGCATGAATCAAACA+GGG | + | chr5_4:35397403-35397422 | None:intergenic | 45.0% |
| !! | TCCTTGCTGTTTACCATCCA+TGG | - | chr5_4:35397446-35397465 | Msa0849100:intron | 45.0% |
| TCCATGGATGGTAAACAGCA+AGG | + | chr5_4:35397450-35397469 | None:intergenic | 45.0% | |
| TAGATATTAGGACGTCGGAG+AGG | + | chr5_4:35397749-35397768 | None:intergenic | 45.0% | |
| GACATGCACCTAAGATGTGA+TGG | + | chr5_4:35397827-35397846 | None:intergenic | 45.0% | |
| GCATATTCAGCAATGCGAGT+TGG | + | chr5_4:35397906-35397925 | None:intergenic | 45.0% | |
| !!! | TTTTTAGGTTGGAGCGGCAA+TGG | - | chr5_4:35397952-35397971 | Msa0849100:intron | 45.0% |
| ACGAGTATCAAGGTGATCGT+GGG | + | chr5_4:35398131-35398150 | None:intergenic | 45.0% | |
| TACGAGTATCAAGGTGATCG+TGG | + | chr5_4:35398132-35398151 | None:intergenic | 45.0% | |
| AACGTTACAATCATGGCGCG+TGG | - | chr5_4:35393419-35393438 | Msa0849100:three_prime_UTR | 50.0% | |
| GGCAGTGGAAGAATCCATGA+TGG | + | chr5_4:35393748-35393767 | None:intergenic | 50.0% | |
| TTCCACTGCCACCAACAATC+AGG | - | chr5_4:35393758-35393777 | Msa0849100:CDS | 50.0% | |
| !! | TACCTGATTGTTGGTGGCAG+TGG | + | chr5_4:35393763-35393782 | None:intergenic | 50.0% |
| !! | GTACCGGTTCATGGAGAATG+AGG | - | chr5_4:35394057-35394076 | Msa0849100:intron | 50.0% |
| CAGCCTCATTCTCCATGAAC+CGG | + | chr5_4:35394063-35394082 | None:intergenic | 50.0% | |
| !! | GAATGAGGCTGGTTTGACAG+AGG | - | chr5_4:35394072-35394091 | Msa0849100:intron | 50.0% |
| GGACAGACACCTTCATCATC+TGG | + | chr5_4:35394183-35394202 | None:intergenic | 50.0% | |
| ! | TCTGGGCTCACCAGTTTTTC+TGG | - | chr5_4:35394245-35394264 | Msa0849100:intron | 50.0% |
| ! | CTGGGCTCACCAGTTTTTCT+GGG | - | chr5_4:35394246-35394265 | Msa0849100:intron | 50.0% |
| ! | TGGGCTCACCAGTTTTTCTG+GGG | - | chr5_4:35394247-35394266 | Msa0849100:intron | 50.0% |
| TTGGAGTCCCCCCAAATTAG+GGG | - | chr5_4:35395620-35395639 | Msa0849100:CDS | 50.0% | |
| TGGAAGGAAAGGAGGGCTTT+GGG | + | chr5_4:35395675-35395694 | None:intergenic | 50.0% | |
| GAGGAAGTGGAAGGAAAGGA+GGG | + | chr5_4:35395682-35395701 | None:intergenic | 50.0% | |
| GAAGGAGGAAGTGGAAGGAA+AGG | + | chr5_4:35395686-35395705 | None:intergenic | 50.0% | |
| GGGAAAAGAGAAGGAGGAAG+TGG | + | chr5_4:35395695-35395714 | None:intergenic | 50.0% | |
| !! | GGCTTTGGGAAAAGAGAAGG+AGG | + | chr5_4:35395701-35395720 | None:intergenic | 50.0% |
| TCTGTTTGGGAGTTCAGGAG+GGG | + | chr5_4:35395726-35395745 | None:intergenic | 50.0% | |
| GTCTGTTTGGGAGTTCAGGA+GGG | + | chr5_4:35395727-35395746 | None:intergenic | 50.0% | |
| TAGGGTCTGTTTGGGAGTTC+AGG | + | chr5_4:35395731-35395750 | None:intergenic | 50.0% | |
| CCCTAACTGTCTCTGTTCCA+TGG | - | chr5_4:35395746-35395765 | Msa0849100:CDS | 50.0% | |
| GGCTGTCATGCTCTTATGGA+TGG | - | chr5_4:35396078-35396097 | Msa0849100:intron | 50.0% | |
| ! | TTGTGGTCATTTGGAGCTGC+TGG | - | chr5_4:35396103-35396122 | Msa0849100:intron | 50.0% |
| CTGCTATTAGGACACTGCGA+TGG | - | chr5_4:35396497-35396516 | Msa0849100:intron | 50.0% | |
| TATTAGGACACTGCGATGGG+AGG | - | chr5_4:35396501-35396520 | Msa0849100:intron | 50.0% | |
| ! | AACGGGAGTTGAAGCACTTG+TGG | - | chr5_4:35396950-35396969 | Msa0849100:intron | 50.0% |
| ! | CTGGAACTTGCTCTGGTGTT+TGG | - | chr5_4:35397030-35397049 | Msa0849100:intron | 50.0% |
| ! | GTAGGGGGCATGAATCAAAC+AGG | + | chr5_4:35397404-35397423 | None:intergenic | 50.0% |
| CATGCCCCCTACTTAGTAGT+TGG | - | chr5_4:35397412-35397431 | Msa0849100:intron | 50.0% | |
| GGTGCAATGTCTCGGAAATC+TGG | + | chr5_4:35398066-35398085 | None:intergenic | 50.0% | |
| AAGTCGCTGGTGCAATGTCT+CGG | + | chr5_4:35398074-35398093 | None:intergenic | 50.0% | |
| TGCACCAGCGACTTCAACAT+AGG | - | chr5_4:35398080-35398099 | Msa0849100:intron | 50.0% | |
| AGCTCCTATGTTGAAGTCGC+TGG | + | chr5_4:35398087-35398106 | None:intergenic | 50.0% | |
| ACACAACCCAAGATGGCGCA+TGG | - | chr5_4:35393395-35393414 | Msa0849100:three_prime_UTR | 55.0% | |
| ACGTTGCCATGCGCCATCTT+GGG | + | chr5_4:35393404-35393423 | None:intergenic | 55.0% | |
| AACGTTGCCATGCGCCATCT+TGG | + | chr5_4:35393405-35393424 | None:intergenic | 55.0% | |
| !! | GGCGTTGGCACGATGTATTC+TGG | - | chr5_4:35393930-35393949 | Msa0849100:intron | 55.0% |
| CGGTTCATGGAGAATGAGGC+TGG | - | chr5_4:35394061-35394080 | Msa0849100:intron | 55.0% | |
| GTGTTGGGACTGCTCTTGGA+TGG | - | chr5_4:35394125-35394144 | Msa0849100:intron | 55.0% | |
| GGACTGCTCTTGGATGGAGT+TGG | - | chr5_4:35394131-35394150 | Msa0849100:intron | 55.0% | |
| GCGCGCAATCCAGATGATGA+AGG | - | chr5_4:35394171-35394190 | Msa0849100:intron | 55.0% | |
| ! | AGGGGGTGGACTTTGTTGAG+AGG | - | chr5_4:35395434-35395453 | Msa0849100:CDS | 55.0% |
| ! | GGGGGTGGACTTTGTTGAGA+GGG | - | chr5_4:35395435-35395454 | Msa0849100:CDS | 55.0% |
| GGAAGGAAAGGAGGGCTTTG+GGG | + | chr5_4:35395674-35395693 | None:intergenic | 55.0% | |
| GTGGAAGGAAAGGAGGGCTT+TGG | + | chr5_4:35395676-35395695 | None:intergenic | 55.0% | |
| GGAGGAAGTGGAAGGAAAGG+AGG | + | chr5_4:35395683-35395702 | None:intergenic | 55.0% | |
| GTTCAGGAGGGGATGGCTTT+GGG | + | chr5_4:35395715-35395734 | None:intergenic | 55.0% | |
| AGTTCAGGAGGGGATGGCTT+TGG | + | chr5_4:35395716-35395735 | None:intergenic | 55.0% | |
| TTTGGGAGTTCAGGAGGGGA+TGG | + | chr5_4:35395722-35395741 | None:intergenic | 55.0% | |
| GGTCTGTTTGGGAGTTCAGG+AGG | + | chr5_4:35395728-35395747 | None:intergenic | 55.0% | |
| GTAGCTTCAAGCATGGGCGA+CGG | - | chr5_4:35396130-35396149 | Msa0849100:intron | 55.0% | |
| TTGCGAGGCTGCATCAGTTC+CGG | - | chr5_4:35396396-35396415 | Msa0849100:intron | 55.0% | |
| !! | GAGATGCACAATGGGCTACC+TGG | + | chr5_4:35396741-35396760 | None:intergenic | 55.0% |
| ACCGTTCTGCAAGAGATGCC+TGG | - | chr5_4:35396913-35396932 | Msa0849100:intron | 55.0% | |
| CCCAGGCATCTCTTGCAGAA+CGG | + | chr5_4:35396917-35396936 | None:intergenic | 55.0% | |
| CCGTTCTGCAAGAGATGCCT+GGG | - | chr5_4:35396914-35396933 | Msa0849100:intron | 55.0% | |
| CTTGCTCTGGTGTTTGGGCA+TGG | - | chr5_4:35397036-35397055 | Msa0849100:intron | 55.0% | |
| !! | TGGTGGAAACTCGACTTGGG+TGG | - | chr5_4:35397208-35397227 | Msa0849100:intron | 55.0% |
| AACATAGGAGCTCGCGTGCA+AGG | - | chr5_4:35398095-35398114 | Msa0849100:intron | 55.0% | |
| ACATAGGAGCTCGCGTGCAA+GGG | - | chr5_4:35398096-35398115 | Msa0849100:intron | 55.0% | |
| TGGCCACTCTATGCTGTCGC+TGG | - | chr5_4:35394100-35394119 | Msa0849100:intron | 60.0% | |
| CCACTCTATGCTGTCGCTGG+CGG | - | chr5_4:35394103-35394122 | Msa0849100:intron | 60.0% | |
| TATGCTGTCGCTGGCGGTGT+TGG | - | chr5_4:35394109-35394128 | Msa0849100:intron | 60.0% | |
| ATGCTGTCGCTGGCGGTGTT+GGG | - | chr5_4:35394110-35394129 | Msa0849100:intron | 60.0% | |
| GTTTGGGAGTTTGGAGGGGG+TGG | - | chr5_4:35395420-35395439 | Msa0849100:CDS | 60.0% | |
| TGGACGCTGGTGGCTTCTTG+TGG | - | chr5_4:35396153-35396172 | Msa0849100:intron | 60.0% | |
| GGTGGCTTCTTGTGGTGAGC+TGG | - | chr5_4:35396161-35396180 | Msa0849100:intron | 60.0% | |
| GGTTGGAGCGGCAATGGTTG+TGG | - | chr5_4:35397958-35397977 | Msa0849100:intron | 60.0% | |
| TGGAGCGGCAATGGTTGTGG+TGG | - | chr5_4:35397961-35397980 | Msa0849100:intron | 60.0% | |
| CCGCCAGCGACAGCATAGAG+TGG | + | chr5_4:35394106-35394125 | None:intergenic | 65.0% | |
| ! | GGCGGTGTTGGGACTGCTCT+TGG | - | chr5_4:35394121-35394140 | Msa0849100:intron | 65.0% |
| GCTTCAAGCATGGGCGACGG+TGG | - | chr5_4:35396133-35396152 | Msa0849100:intron | 65.0% | |
| GCATGGGCGACGGTGGACGC+TGG | - | chr5_4:35396140-35396159 | Msa0849100:intron | 75.0% | |
| TGGGCGACGGTGGACGCTGG+TGG | - | chr5_4:35396143-35396162 | Msa0849100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35393356 | 35398435 | 35393356 | ID=Msa0849100;Name=Msa0849100 |
| chr5_4 | mRNA | 35393356 | 35398435 | 35393356 | ID=Msa0849100-mRNA-1;Parent=Msa0849100;Name=Msa0849100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=355|1|0.85|1|0.83|0.71|7|267|532 |
| chr5_4 | exon | 35393356 | 35393832 | 35393356 | ID=Msa0849100-mRNA-1:exon:11866;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35394670 | 35394903 | 35394670 | ID=Msa0849100-mRNA-1:exon:11865;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35395050 | 35395166 | 35395050 | ID=Msa0849100-mRNA-1:exon:11864;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35395269 | 35395800 | 35395269 | ID=Msa0849100-mRNA-1:exon:11863;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35397462 | 35397922 | 35397462 | ID=Msa0849100-mRNA-1:exon:11862;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35398012 | 35398094 | 35398012 | ID=Msa0849100-mRNA-1:exon:11861;Parent=Msa0849100-mRNA-1 |
| chr5_4 | exon | 35398119 | 35398435 | 35398119 | ID=Msa0849100-mRNA-1:exon:11860;Parent=Msa0849100-mRNA-1 |
| chr5_4 | five_prime_UTR | 35398119 | 35398435 | 35398119 | ID=Msa0849100-mRNA-1:five_prime_utr;Parent=Msa0849100-mRNA-1 |
| chr5_4 | five_prime_UTR | 35398057 | 35398094 | 35398057 | ID=Msa0849100-mRNA-1:five_prime_utr;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35398012 | 35398056 | 35398012 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35397462 | 35397922 | 35397462 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35395269 | 35395800 | 35395269 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35395050 | 35395166 | 35395050 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35394670 | 35394903 | 35394670 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | CDS | 35393623 | 35393832 | 35393623 | ID=Msa0849100-mRNA-1:cds;Parent=Msa0849100-mRNA-1 |
| chr5_4 | three_prime_UTR | 35393356 | 35393622 | 35393356 | ID=Msa0849100-mRNA-1:three_prime_utr;Parent=Msa0849100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
