Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935640 | A0A396HB38 | 48.241 | 199 | 74 | 5 | 2 | 179 | 254 | 444 | 8.40e-49 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099210 | Msa0935640 | 0.809098 | 2.237767e-50 | -8.615850e-47 |
| Msa0114060 | Msa0935640 | 0.802689 | 4.980545e-49 | -8.615850e-47 |
| Msa0694370 | Msa0935640 | 0.800205 | 1.607299e-48 | -8.615850e-47 |
| Msa0731940 | Msa0935640 | 0.811592 | 6.481412e-51 | -8.615850e-47 |
| Msa0760130 | Msa0935640 | 0.805777 | 1.133189e-49 | -8.615850e-47 |
| Msa0766630 | Msa0935640 | 0.815764 | 7.820013e-52 | -8.615850e-47 |
| Msa0811080 | Msa0935640 | 0.838360 | 3.011355e-57 | -8.615850e-47 |
| Msa0131770 | Msa0935640 | 0.814802 | 1.279673e-51 | -8.615850e-47 |
| Msa0142220 | Msa0935640 | 0.838962 | 2.106007e-57 | -8.615850e-47 |
| Msa0385840 | Msa0935640 | 0.817083 | 3.962996e-52 | -8.615850e-47 |
| Msa0390070 | Msa0935640 | 0.808563 | 2.912250e-50 | -8.615850e-47 |
| Msa0407750 | Msa0935640 | 0.829968 | 3.824299e-55 | -8.615850e-47 |
| Msa0436800 | Msa0935640 | 0.822550 | 2.230880e-53 | -8.615850e-47 |
| Msa0444130 | Msa0935640 | 0.813529 | 2.444537e-51 | -8.615850e-47 |
| Msa0251640 | Msa0935640 | 0.815291 | 9.968764e-52 | -8.615850e-47 |
| Msa0273100 | Msa0935640 | 0.823164 | 1.604941e-53 | -8.615850e-47 |
| Msa0290870 | Msa0935640 | 0.830426 | 2.957349e-55 | -8.615850e-47 |
| Msa0331000 | Msa0935640 | 0.800185 | 1.622554e-48 | -8.615850e-47 |
| Msa0600700 | Msa0935640 | 0.802986 | 4.323665e-49 | -8.615850e-47 |
| Msa0903240 | Msa0935640 | 0.846439 | 2.170099e-59 | -8.615850e-47 |
| Msa0935640 | Msa0972570 | 0.810969 | 8.848056e-51 | -8.615850e-47 |
| Msa0935640 | Msa1014540 | 0.812505 | 4.099286e-51 | -8.615850e-47 |
| Msa0935640 | Msa1023950 | 0.808390 | 3.170395e-50 | -8.615850e-47 |
| Msa0935640 | Msa1075650 | 0.805099 | 1.572034e-49 | -8.615850e-47 |
| Msa0935640 | Msa1121480 | 0.825833 | 3.778022e-54 | -8.615850e-47 |
| Msa0935640 | Msa1121490 | 0.835536 | 1.584991e-56 | -8.615850e-47 |
| Msa0935640 | Msa1144450 | 0.801422 | 9.073596e-49 | -8.615850e-47 |
| Msa0935640 | Msa1158310 | 0.801961 | 7.034197e-49 | -8.615850e-47 |
| Msa0935640 | Msa1242670 | 0.810723 | 1.000437e-50 | -8.615850e-47 |
| Msa0935640 | Msa1313280 | 0.806766 | 7.012666e-50 | -8.615850e-47 |
| Msa0935640 | Msa1366810 | 0.806510 | 7.942472e-50 | -8.615850e-47 |
| Msa0935640 | Msa1410680 | 0.810322 | 1.220884e-50 | -8.615850e-47 |
| Msa0935640 | Msa1422180 | 0.809435 | 1.895170e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935640 | MtrunA17_Chr6g0451441 | 48.241 | 199 | 74 | 5 | 2 | 179 | 254 | 444 | 1.62e-52 | 174 |
| Msa0935640 | MtrunA17_Chr6g0451421 | 48.760 | 121 | 56 | 2 | 70 | 184 | 9 | 129 | 1.05e-33 | 117 |
| Msa0935640 | MtrunA17_Chr2g0325301 | 44.444 | 126 | 64 | 2 | 65 | 184 | 6 | 131 | 1.17e-32 | 114 |
| Msa0935640 | MtrunA17_Chr6g0451411 | 40.741 | 135 | 74 | 1 | 51 | 179 | 158 | 292 | 7.32e-29 | 109 |
| Msa0935640 | MtrunA17_Chr7g0264421 | 40.566 | 106 | 63 | 0 | 79 | 184 | 220 | 325 | 2.12e-20 | 87.0 |
| Msa0935640 | MtrunA17_Chr2g0329701 | 40.566 | 106 | 63 | 0 | 79 | 184 | 250 | 355 | 4.37e-20 | 86.3 |
| Msa0935640 | MtrunA17_Chr6g0451451 | 50.000 | 68 | 34 | 0 | 117 | 184 | 1 | 68 | 5.90e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935640 | AT3G01410.2 | 47.009 | 117 | 56 | 2 | 69 | 179 | 154 | 270 | 1.04e-23 | 95.5 |
| Msa0935640 | AT3G01410.1 | 47.009 | 117 | 56 | 2 | 69 | 179 | 154 | 270 | 1.04e-23 | 95.5 |
| Msa0935640 | AT1G24090.1 | 41.860 | 129 | 68 | 3 | 58 | 179 | 204 | 332 | 6.97e-19 | 83.2 |
| Msa0935640 | AT5G51080.3 | 37.209 | 129 | 74 | 3 | 58 | 179 | 110 | 238 | 5.27e-18 | 79.7 |
| Msa0935640 | AT5G51080.1 | 37.209 | 129 | 74 | 3 | 58 | 179 | 173 | 301 | 1.87e-17 | 79.0 |
| Msa0935640 | AT5G51080.2 | 37.209 | 129 | 74 | 3 | 58 | 179 | 173 | 301 | 1.87e-17 | 79.0 |
Find 61 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGCCCCTAAGCTAATTT+TGG | 0.153721 | 6_3:-6231442 | None:intergenic |
| CTTTCTTGTACCATTGTATT+TGG | 0.185261 | 6_3:+6229448 | Msa0935640:CDS |
| CTTTGCAGTACTATGGATTC+TGG | 0.252287 | 6_3:+6229601 | Msa0935640:intron |
| TATGGATTCTGGCAAGGATT+TGG | 0.278405 | 6_3:+6229612 | Msa0935640:CDS |
| CTCTGAGTTTGTTGTCAATC+AGG | 0.282564 | 6_3:+6229731 | Msa0935640:CDS |
| GGCATTCATCCGTTCGAATT+CGG | 0.288491 | 6_3:-6228135 | None:intergenic |
| TATGTTTCTTTGCAGTACTA+TGG | 0.304270 | 6_3:+6229594 | Msa0935640:intron |
| ATGGATTCTGGCAAGGATTT+GGG | 0.335466 | 6_3:+6229613 | Msa0935640:CDS |
| TTTGAACTTGCCACGACATA+TGG | 0.342170 | 6_3:+6231415 | Msa0935640:three_prime_UTR |
| ATGATTTATATTCCAAACTT+TGG | 0.371920 | 6_3:-6231377 | None:intergenic |
| CTCACCTCTCGGTTTGCAGC+TGG | 0.381653 | 6_3:-6228209 | None:intergenic |
| GTGTGTGTCGTTGGTCTGCC+AGG | 0.395874 | 6_3:-6230078 | None:intergenic |
| GCTTTACTGCTTGCTGATGA+TGG | 0.411891 | 6_3:+6229493 | Msa0935640:CDS |
| CTGCGATTGAAGTGTCTTCA+AGG | 0.419246 | 6_3:-6228180 | None:intergenic |
| GGAAAACAACATGGGAATAA+CGG | 0.433296 | 6_3:+6228028 | Msa0935640:CDS |
| TGGATGCCCAAAATTAGCTT+AGG | 0.436390 | 6_3:+6231435 | Msa0935640:three_prime_UTR |
| ATTGATGATTTGATTAAACT+TGG | 0.465397 | 6_3:-6228156 | None:intergenic |
| CTTTACTGCTTGCTGATGAT+GGG | 0.465599 | 6_3:+6229494 | Msa0935640:CDS |
| AAACTCAGAGTCTCCTTTGA+CGG | 0.469224 | 6_3:-6229718 | None:intergenic |
| GCTTGCTGATGATGGGAGTC+AGG | 0.473864 | 6_3:+6229501 | Msa0935640:CDS |
| GGATGCCCAAAATTAGCTTA+GGG | 0.478567 | 6_3:+6231436 | Msa0935640:three_prime_UTR |
| ACACTTAAGGAGCTTATGTC+TGG | 0.479927 | 6_3:+6230097 | Msa0935640:CDS |
| AGACCAACGACACACACTTA+AGG | 0.491634 | 6_3:+6230084 | Msa0935640:CDS |
| TCTCCATCCAGCACATTCCT+CGG | 0.496932 | 6_3:+6230153 | Msa0935640:CDS |
| TTTAAACACGTTACCGTCAA+AGG | 0.509214 | 6_3:+6229705 | Msa0935640:CDS |
| CAGTACTATGGATTCTGGCA+AGG | 0.514595 | 6_3:+6229606 | Msa0935640:intron |
| ATGTCGTGGCAAGTTCAAAT+CGG | 0.520480 | 6_3:-6231411 | None:intergenic |
| CTCCATCCAGCACATTCCTC+GGG | 0.523432 | 6_3:+6230154 | Msa0935640:CDS |
| CAATTACCCGAGGAATGTGC+TGG | 0.523567 | 6_3:-6230160 | None:intergenic |
| AGCTGAAATGAAGCAAGTAA+AGG | 0.532653 | 6_3:+6228058 | Msa0935640:CDS |
| CTTGAAGACACTTCAATCGC+AGG | 0.534902 | 6_3:+6228181 | Msa0935640:CDS |
| AGTAAAGCTCCTGCACCAGC+TGG | 0.540297 | 6_3:-6229478 | None:intergenic |
| GTATTTGGTGCTGAACCAGC+TGG | 0.540412 | 6_3:+6229463 | Msa0935640:CDS |
| TCCAACAGTTTGGGGAACCC+TGG | 0.542372 | 6_3:+6230060 | Msa0935640:intron |
| ATGAGACAGGCGATCATGAA+AGG | 0.548157 | 6_3:+6229681 | Msa0935640:CDS |
| GGTGCTGAACCAGCTGGTGC+AGG | 0.551244 | 6_3:+6229469 | Msa0935640:CDS |
| CCACCACATTATATCATGAC+TGG | 0.554466 | 6_3:+6231522 | Msa0935640:three_prime_UTR |
| GTCTGGAGGCTATGAAGTTG+AGG | 0.555604 | 6_3:+6230114 | Msa0935640:CDS |
| GCTCCTTAAGTGTGTGTCGT+TGG | 0.557850 | 6_3:-6230087 | None:intergenic |
| GCAAGGAAACACGGAACGGT+TGG | 0.577373 | 6_3:+6228097 | Msa0935640:CDS |
| AAACACGGAACGGTTGGAAG+TGG | 0.579259 | 6_3:+6228103 | Msa0935640:CDS |
| TACCCGAGGAATGTGCTGGA+TGG | 0.580365 | 6_3:-6230156 | None:intergenic |
| GATGCCCAAAATTAGCTTAG+GGG | 0.582782 | 6_3:+6231437 | Msa0935640:three_prime_UTR |
| CCGTTCGAATTCGGATGCAA+TGG | 0.583130 | 6_3:-6228126 | None:intergenic |
| TGTGTGTCGTTGGTCTGCCA+GGG | 0.596653 | 6_3:-6230077 | None:intergenic |
| ATTTGGGCATCAAACAAAAG+AGG | 0.600961 | 6_3:+6229629 | Msa0935640:CDS |
| TGAAGAGTTGCAAGGAAACA+CGG | 0.603291 | 6_3:+6228088 | Msa0935640:CDS |
| TCTCACAATGGAAAACAACA+TGG | 0.609003 | 6_3:+6228019 | None:intergenic |
| GATACAGTTGAAGAGTTGCA+AGG | 0.613898 | 6_3:+6228080 | Msa0935640:CDS |
| TTTGGGCATCAAACAAAAGA+GGG | 0.614208 | 6_3:+6229630 | Msa0935640:CDS |
| CCATTGCATCCGAATTCGAA+CGG | 0.643332 | 6_3:+6228126 | Msa0935640:CDS |
| TCGCCAGTCATGATATAATG+TGG | 0.651159 | 6_3:-6231525 | None:intergenic |
| CTTAAGGAGCTTATGTCTGG+AGG | 0.659047 | 6_3:+6230100 | Msa0935640:CDS |
| CTCACAATGGAAAACAACAT+GGG | 0.659922 | 6_3:+6228020 | None:intergenic |
| CCAGTCATGATATAATGTGG+TGG | 0.686353 | 6_3:-6231522 | None:intergenic |
| TGGGCATCAAACAAAAGAGG+GGG | 0.687228 | 6_3:+6229632 | Msa0935640:CDS |
| TGGTTCAGCACCAAATACAA+TGG | 0.687523 | 6_3:-6229458 | None:intergenic |
| AGTTGCAAGGAAACACGGAA+CGG | 0.711123 | 6_3:+6228093 | Msa0935640:CDS |
| ACAATAACATCAAACATCTG+CGG | 0.712173 | 6_3:-6231548 | None:intergenic |
| TTGGGCATCAAACAAAAGAG+GGG | 0.719635 | 6_3:+6229631 | Msa0935640:CDS |
| TGAACCAGCTGCAAACCGAG+AGG | 0.720273 | 6_3:+6228205 | Msa0935640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAATAAAATATCTATT+AGG | - | chr6_3:6229146-6229165 | None:intergenic | 10.0% |
| !! | ATGTAAATATTCATATAATT+AGG | - | chr6_3:6230775-6230794 | None:intergenic | 10.0% |
| !!! | TGATTTTATGATACTATAAT+TGG | + | chr6_3:6228538-6228557 | Msa0935640:intron | 15.0% |
| !!! | CTTTGTTATTTTTATAAAGA+GGG | - | chr6_3:6229922-6229941 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCTCTTCAATT+TGG | + | chr6_3:6230806-6230825 | Msa0935640:intron | 15.0% |
| !! | ATTAGAAAAAGAAATGTTAT+TGG | - | chr6_3:6230866-6230885 | None:intergenic | 15.0% |
| !!! | ATTTCTTTTTCTAATGTTTA+AGG | + | chr6_3:6230871-6230890 | Msa0935640:intron | 15.0% |
| !!! | TTTCTTTTTCTAATGTTTAA+GGG | + | chr6_3:6230872-6230891 | Msa0935640:intron | 15.0% |
| !!! | ATTGATGATTTGATTAAACT+TGG | - | chr6_3:6228159-6228178 | None:intergenic | 20.0% |
| !! | ATTGATACATTTAGATTTAG+AGG | + | chr6_3:6228332-6228351 | Msa0935640:intron | 20.0% |
| !! | CATAAAATCAAATGTCTATT+GGG | - | chr6_3:6228528-6228547 | None:intergenic | 20.0% |
| !! | TCATAAAATCAAATGTCTAT+TGG | - | chr6_3:6228529-6228548 | None:intergenic | 20.0% |
| !!! | TTTTATGATACTATAATTGG+TGG | + | chr6_3:6228541-6228560 | Msa0935640:intron | 20.0% |
| !!! | TTATTTTATGATGCTACAAT+TGG | + | chr6_3:6229156-6229175 | Msa0935640:intron | 20.0% |
| !!! | TAAAAAAAAACTTTGAAGCA+TGG | - | chr6_3:6229259-6229278 | None:intergenic | 20.0% |
| !!! | TCAAAGTTTTTTTTTATGCT+TGG | + | chr6_3:6229263-6229282 | Msa0935640:intron | 20.0% |
| !!! | GTAGAAAGTATTTAATTACT+TGG | - | chr6_3:6229872-6229891 | None:intergenic | 20.0% |
| !!! | CCTTTGTTATTTTTATAAAG+AGG | - | chr6_3:6229923-6229942 | None:intergenic | 20.0% |
| !! | CCTCTTTATAAAAATAACAA+AGG | + | chr6_3:6229920-6229939 | Msa0935640:intron | 20.0% |
| !! | AAACAATCTTTACATGAATT+TGG | - | chr6_3:6230313-6230332 | None:intergenic | 20.0% |
| !! | AAACAATCTTTCCATAAATT+TGG | + | chr6_3:6230475-6230494 | Msa0935640:intron | 20.0% |
| !! | TATAGGAATTCTCATTTATT+AGG | - | chr6_3:6231001-6231020 | None:intergenic | 20.0% |
| !! | TTTAAACCAACAAGTATATT+TGG | + | chr6_3:6231040-6231059 | Msa0935640:intron | 20.0% |
| !! | ATTGAAAGTAATATTGTGAA+AGG | + | chr6_3:6231107-6231126 | Msa0935640:intron | 20.0% |
| !!! | GGATATGAAAATAAATTTTG+AGG | - | chr6_3:6231182-6231201 | None:intergenic | 20.0% |
| !! | TTATAATCCTGTATCAAATA+GGG | - | chr6_3:6231203-6231222 | None:intergenic | 20.0% |
| !! | TTTATAATCCTGTATCAAAT+AGG | - | chr6_3:6231204-6231223 | None:intergenic | 20.0% |
| !! | TACAGGATTATAAAATCTAA+TGG | + | chr6_3:6231210-6231229 | Msa0935640:intron | 20.0% |
| !!! | CATTTCTTGTTTTAGTATAT+TGG | + | chr6_3:6231337-6231356 | Msa0935640:three_prime_UTR | 20.0% |
| !! | ATGATTTATATTCCAAACTT+TGG | - | chr6_3:6231380-6231399 | None:intergenic | 20.0% |
| ! | ATTTCCAAAATGTTATGGAT+TGG | + | chr6_3:6228246-6228265 | Msa0935640:intron | 25.0% |
| !! | ATACTATAATTGGTGGATAA+TGG | + | chr6_3:6228548-6228567 | Msa0935640:intron | 25.0% |
| ! | AGAATATTTGTGATCATTCA+TGG | + | chr6_3:6228802-6228821 | Msa0935640:intron | 25.0% |
| !! | ATTCATGTTTTTCTGTTAGT+CGG | - | chr6_3:6229037-6229056 | None:intergenic | 25.0% |
| ! | AAATATCTATTAGGACATTC+AGG | - | chr6_3:6229137-6229156 | None:intergenic | 25.0% |
| ! | CTATATAGTTTATGCAGTAT+AGG | + | chr6_3:6229309-6229328 | Msa0935640:intron | 25.0% |
| ! | TGACTATTAAAACTTCATAG+AGG | - | chr6_3:6229352-6229371 | None:intergenic | 25.0% |
| !!! | GTTATTTTTATAAAGAGGGT+AGG | - | chr6_3:6229918-6229937 | None:intergenic | 25.0% |
| ! | TTAACAGTATCTAACCATTT+AGG | - | chr6_3:6229964-6229983 | None:intergenic | 25.0% |
| ! | AATTTACTGACACATGTTAT+TGG | + | chr6_3:6230034-6230053 | Msa0935640:intron | 25.0% |
| ! | GAGTTCAAAAACAATTACAT+TGG | + | chr6_3:6230190-6230209 | Msa0935640:intron | 25.0% |
| !! | TTTTAAATGCAACCATTTAC+TGG | + | chr6_3:6230242-6230261 | Msa0935640:intron | 25.0% |
| ! | ATACATGTCTACCAAATTTA+TGG | - | chr6_3:6230489-6230508 | None:intergenic | 25.0% |
| ! | TTTGTTAGGATTCTTATGAT+AGG | + | chr6_3:6230625-6230644 | Msa0935640:intron | 25.0% |
| !! | AACAATATATCTAAGATGCT+GGG | - | chr6_3:6230722-6230741 | None:intergenic | 25.0% |
| ! | AAAAGAAATGTTATTGGTAG+AGG | - | chr6_3:6230860-6230879 | None:intergenic | 25.0% |
| !!! | TGTTTGGTTTTCTATATCAA+TGG | + | chr6_3:6231066-6231085 | Msa0935640:intron | 25.0% |
| ! | GTAATATTGTGAAAGGTTAA+TGG | + | chr6_3:6231114-6231133 | Msa0935640:intron | 25.0% |
| !! | TTATGTGATACTTTTGTAGA+TGG | + | chr6_3:6231237-6231256 | Msa0935640:intron | 25.0% |
| !!! | TTCTTGTTTTAGTATATTGG+AGG | + | chr6_3:6231340-6231359 | Msa0935640:three_prime_UTR | 25.0% |
| ! | ATCTTAAAAACTCTTCTATG+TGG | + | chr6_3:6231496-6231515 | Msa0935640:three_prime_UTR | 25.0% |
| ACTCGATTTCCAAAATGTTA+TGG | + | chr6_3:6228241-6228260 | Msa0935640:intron | 30.0% | |
| ! | TCATCCAATCCATAACATTT+TGG | - | chr6_3:6228253-6228272 | None:intergenic | 30.0% |
| !! | TGCTTGGTTTTCTTCATTTT+TGG | + | chr6_3:6228641-6228660 | Msa0935640:intron | 30.0% |
| AAATTCAATTGAAAGGTAGC+AGG | - | chr6_3:6228860-6228879 | None:intergenic | 30.0% | |
| TGCTACCTTTCAATTGAATT+TGG | + | chr6_3:6228859-6228878 | Msa0935640:intron | 30.0% | |
| ATTGGCCAAATTCAATTGAA+AGG | - | chr6_3:6228867-6228886 | None:intergenic | 30.0% | |
| ! | TCACGTGATATCTTTGATTT+AGG | + | chr6_3:6228955-6228974 | Msa0935640:intron | 30.0% |
| ! | TTTTTCTGTTAGTCGGTAAA+AGG | - | chr6_3:6229030-6229049 | None:intergenic | 30.0% |
| TGCAAATCAGAAGAGATAAA+TGG | + | chr6_3:6229080-6229099 | Msa0935640:intron | 30.0% | |
| ! | TTTTATGATGCTACAATTGG+TGG | + | chr6_3:6229159-6229178 | Msa0935640:intron | 30.0% |
| TGAGGAATTGATCATTTCTA+GGG | - | chr6_3:6229216-6229235 | None:intergenic | 30.0% | |
| TTGAGGAATTGATCATTTCT+AGG | - | chr6_3:6229217-6229236 | None:intergenic | 30.0% | |
| AGAAATGATCAATTCCTCAA+AGG | + | chr6_3:6229217-6229236 | Msa0935640:intron | 30.0% | |
| GAAATGATCAATTCCTCAAA+GGG | + | chr6_3:6229218-6229237 | Msa0935640:intron | 30.0% | |
| CTTTCTTGTACCATTGTATT+TGG | + | chr6_3:6229448-6229467 | Msa0935640:CDS | 30.0% | |
| ATTCTATGCAACAGTTCATT+TGG | + | chr6_3:6229529-6229548 | Msa0935640:intron | 30.0% | |
| TTCTATGCAACAGTTCATTT+GGG | + | chr6_3:6229530-6229549 | Msa0935640:intron | 30.0% | |
| TATGTTTCTTTGCAGTACTA+TGG | + | chr6_3:6229594-6229613 | Msa0935640:intron | 30.0% | |
| !! | ATTGATTTTAGGTATGAGAC+AGG | + | chr6_3:6229668-6229687 | Msa0935640:CDS | 30.0% |
| ACATTAATAGTAGCAACCTA+AGG | + | chr6_3:6229890-6229909 | Msa0935640:intron | 30.0% | |
| TTCAATCCATTGTTCCTAAA+TGG | + | chr6_3:6229947-6229966 | Msa0935640:intron | 30.0% | |
| ATCTAACCATTTAGGAACAA+TGG | - | chr6_3:6229956-6229975 | None:intergenic | 30.0% | |
| CATGTGTCAGTAAATTGTTT+AGG | - | chr6_3:6230030-6230049 | None:intergenic | 30.0% | |
| !!! | TTATTGGTTTTCCAACAGTT+TGG | + | chr6_3:6230050-6230069 | Msa0935640:intron | 30.0% |
| !!! | TATTGGTTTTCCAACAGTTT+GGG | + | chr6_3:6230051-6230070 | Msa0935640:intron | 30.0% |
| CTTAACAAGATACCTATTGA+AGG | - | chr6_3:6230349-6230368 | None:intergenic | 30.0% | |
| CTTCAATAGGTATCTTGTTA+AGG | + | chr6_3:6230347-6230366 | Msa0935640:intron | 30.0% | |
| TAGGTATCTTGTTAAGGAAA+TGG | + | chr6_3:6230353-6230372 | Msa0935640:intron | 30.0% | |
| !! | GTAGAAAGTATTGCTAGATT+AGG | + | chr6_3:6230382-6230401 | Msa0935640:intron | 30.0% |
| AGTAAGTGTATAGCAAACTA+AGG | - | chr6_3:6230420-6230439 | None:intergenic | 30.0% | |
| CTCAAGATATTCAGAAACTT+AGG | - | chr6_3:6230693-6230712 | None:intergenic | 30.0% | |
| ! | GAACAATATATCTAAGATGC+TGG | - | chr6_3:6230723-6230742 | None:intergenic | 30.0% |
| AATTAGGATCCTAATGCAAT+TGG | - | chr6_3:6230759-6230778 | None:intergenic | 30.0% | |
| ! | ACATTTTCTCAGTTCTCTAT+AGG | + | chr6_3:6230958-6230977 | Msa0935640:intron | 30.0% |
| ACACAACCAAATATACTTGT+TGG | - | chr6_3:6231049-6231068 | None:intergenic | 30.0% | |
| CAAGTATATTTGGTTGTGTT+TGG | + | chr6_3:6231050-6231069 | Msa0935640:intron | 30.0% | |
| !! | TTGTGAAAGGTTAATGGATT+TGG | + | chr6_3:6231120-6231139 | Msa0935640:intron | 30.0% |
| !! | AAAGGTTAATGGATTTGGTA+GGG | + | chr6_3:6231125-6231144 | Msa0935640:intron | 30.0% |
| TTCATATCCCTATTTGATAC+AGG | + | chr6_3:6231193-6231212 | Msa0935640:intron | 30.0% | |
| !!! | TTGTTTTAGTATATTGGAGG+AGG | + | chr6_3:6231343-6231362 | Msa0935640:three_prime_UTR | 30.0% |
| ! | GTTACAATTTTGCCAAAGTT+TGG | + | chr6_3:6231365-6231384 | Msa0935640:three_prime_UTR | 30.0% |
| GGAAAACAACATGGGAATAA+CGG | + | chr6_3:6228028-6228047 | Msa0935640:CDS | 35.0% | |
| AGCTGAAATGAAGCAAGTAA+AGG | + | chr6_3:6228058-6228077 | Msa0935640:CDS | 35.0% | |
| GTTTAACATTTCTCACCTCT+CGG | - | chr6_3:6228223-6228242 | None:intergenic | 35.0% | |
| CCATGTACTCGTTTCATTAA+CGG | + | chr6_3:6228371-6228390 | Msa0935640:intron | 35.0% | |
| AAAGCTCTCTTATACACAGA+AGG | - | chr6_3:6228433-6228452 | None:intergenic | 35.0% | |
| TGTCTATTGGGATATTCAAG+AGG | - | chr6_3:6228516-6228535 | None:intergenic | 35.0% | |
| TGAGGAATTGAGCATTTCTA+GGG | - | chr6_3:6228598-6228617 | None:intergenic | 35.0% | |
| ! | GATCATTCATGGTAGCTTTT+CGG | + | chr6_3:6228813-6228832 | Msa0935640:intron | 35.0% |
| ! | AAGCATGGTGCTAGTTTAAT+AGG | - | chr6_3:6229244-6229263 | None:intergenic | 35.0% |
| AGTTTATGCAGTATAGGTTC+TGG | + | chr6_3:6229315-6229334 | Msa0935640:intron | 35.0% | |
| GTTTATGCAGTATAGGTTCT+GGG | + | chr6_3:6229316-6229335 | Msa0935640:intron | 35.0% | |
| TCTATGCAACAGTTCATTTG+GGG | + | chr6_3:6229531-6229550 | Msa0935640:intron | 35.0% | |
| CTGCAAAGAAACATAAGAGT+TGG | - | chr6_3:6229589-6229608 | None:intergenic | 35.0% | |
| ATTTGGGCATCAAACAAAAG+AGG | + | chr6_3:6229629-6229648 | Msa0935640:CDS | 35.0% | |
| TTTGGGCATCAAACAAAAGA+GGG | + | chr6_3:6229630-6229649 | Msa0935640:CDS | 35.0% | |
| TTTAAACACGTTACCGTCAA+AGG | + | chr6_3:6229705-6229724 | Msa0935640:CDS | 35.0% | |
| !!! | ATTGGTTTTCCAACAGTTTG+GGG | + | chr6_3:6230052-6230071 | Msa0935640:intron | 35.0% |
| CCATGAATAGAACCAGTAAA+TGG | - | chr6_3:6230257-6230276 | None:intergenic | 35.0% | |
| !! | CCATTTACTGGTTCTATTCA+TGG | + | chr6_3:6230254-6230273 | Msa0935640:intron | 35.0% |
| ! | CATTTTCTGTCACCTTCAAT+AGG | + | chr6_3:6230334-6230353 | Msa0935640:intron | 35.0% |
| CAGTATATAACTAGCTAGGA+TGG | - | chr6_3:6230534-6230553 | None:intergenic | 35.0% | |
| CGAACAGTATATAACTAGCT+AGG | - | chr6_3:6230538-6230557 | None:intergenic | 35.0% | |
| GATTGTACCAAGCAAATACT+GGG | - | chr6_3:6230586-6230605 | None:intergenic | 35.0% | |
| TGATTGTACCAAGCAAATAC+TGG | - | chr6_3:6230587-6230606 | None:intergenic | 35.0% | |
| GCATTAGCAGTAACTTTGTT+AGG | + | chr6_3:6230611-6230630 | Msa0935640:intron | 35.0% | |
| AATGTTATTGGTAGAGGTTG+AGG | - | chr6_3:6230854-6230873 | None:intergenic | 35.0% | |
| GGCATAACCTTGGAAATTTA+AGG | - | chr6_3:6230933-6230952 | None:intergenic | 35.0% | |
| AGAACTGAGAAAATGTCTTG+AGG | - | chr6_3:6230954-6230973 | None:intergenic | 35.0% | |
| ! | CAGCTTTGGTTGCAAAATAT+AGG | - | chr6_3:6231018-6231037 | None:intergenic | 35.0% |
| !! | TGTTGGTTTAAAAGCAGCTT+TGG | - | chr6_3:6231032-6231051 | None:intergenic | 35.0% |
| !! | GAAAGGTTAATGGATTTGGT+AGG | + | chr6_3:6231124-6231143 | Msa0935640:intron | 35.0% |
| !! | AAGGTTAATGGATTTGGTAG+GGG | + | chr6_3:6231126-6231145 | Msa0935640:intron | 35.0% |
| ! | TTTTGCAAGTGTCATGTTGT+CGG | - | chr6_3:6231298-6231317 | None:intergenic | 35.0% |
| CATGACACTTGCAAAAACTA+TGG | + | chr6_3:6231302-6231321 | Msa0935640:exon | 35.0% | |
| ! | TAAGCCCCTAAGCTAATTTT+GGG | - | chr6_3:6231444-6231463 | None:intergenic | 35.0% |
| ! | TTAAGCCCCTAAGCTAATTT+TGG | - | chr6_3:6231445-6231464 | None:intergenic | 35.0% |
| GATACAGTTGAAGAGTTGCA+AGG | + | chr6_3:6228080-6228099 | Msa0935640:CDS | 40.0% | |
| TGAAGAGTTGCAAGGAAACA+CGG | + | chr6_3:6228088-6228107 | Msa0935640:CDS | 40.0% | |
| GAAACGAGTACATGGAACTA+AGG | - | chr6_3:6228366-6228385 | None:intergenic | 40.0% | |
| CCGTTAATGAAACGAGTACA+TGG | - | chr6_3:6228374-6228393 | None:intergenic | 40.0% | |
| GTGAGGAATTGAGCATTTCT+AGG | - | chr6_3:6228599-6228618 | None:intergenic | 40.0% | |
| !! | CAAGCAGAAACTTTGAAGCA+TGG | - | chr6_3:6228627-6228646 | None:intergenic | 40.0% |
| CATGCTTCAAAGTTTCTGCT+TGG | + | chr6_3:6228625-6228644 | Msa0935640:intron | 40.0% | |
| GGTAAAAGGTTTAGTGCTAG+GGG | - | chr6_3:6229016-6229035 | None:intergenic | 40.0% | |
| CGGTAAAAGGTTTAGTGCTA+GGG | - | chr6_3:6229017-6229036 | None:intergenic | 40.0% | |
| TCGGTAAAAGGTTTAGTGCT+AGG | - | chr6_3:6229018-6229037 | None:intergenic | 40.0% | |
| ! | TCTGATTTGCATTTCAGCAG+TGG | - | chr6_3:6229071-6229090 | None:intergenic | 40.0% |
| CTAGTTTAATAGGCCCTTTG+AGG | - | chr6_3:6229234-6229253 | None:intergenic | 40.0% | |
| TGGTTCAGCACCAAATACAA+TGG | - | chr6_3:6229461-6229480 | None:intergenic | 40.0% | |
| ! | CTTTACTGCTTGCTGATGAT+GGG | + | chr6_3:6229494-6229513 | Msa0935640:CDS | 40.0% |
| CTTTGCAGTACTATGGATTC+TGG | + | chr6_3:6229601-6229620 | Msa0935640:intron | 40.0% | |
| TATGGATTCTGGCAAGGATT+TGG | + | chr6_3:6229612-6229631 | Msa0935640:CDS | 40.0% | |
| ATGGATTCTGGCAAGGATTT+GGG | + | chr6_3:6229613-6229632 | Msa0935640:CDS | 40.0% | |
| TTGGGCATCAAACAAAAGAG+GGG | + | chr6_3:6229631-6229650 | Msa0935640:CDS | 40.0% | |
| !!! | CAGTATCGGGCATTGATTTT+AGG | + | chr6_3:6229657-6229676 | Msa0935640:CDS | 40.0% |
| AAACTCAGAGTCTCCTTTGA+CGG | - | chr6_3:6229721-6229740 | None:intergenic | 40.0% | |
| !! | CTCTGAGTTTGTTGTCAATC+AGG | + | chr6_3:6229731-6229750 | Msa0935640:CDS | 40.0% |
| ATAAAGAGGGTAGGTTCCTT+AGG | - | chr6_3:6229909-6229928 | None:intergenic | 40.0% | |
| ACACTTAAGGAGCTTATGTC+TGG | + | chr6_3:6230097-6230116 | Msa0935640:CDS | 40.0% | |
| CACAATTCCCAGTATTTGCT+TGG | + | chr6_3:6230576-6230595 | Msa0935640:intron | 40.0% | |
| TCACTGACACCAATTGCATT+AGG | + | chr6_3:6230747-6230766 | Msa0935640:intron | 40.0% | |
| ! | AACCTTGGAAATTTAAGGCC+CGG | - | chr6_3:6230928-6230947 | None:intergenic | 40.0% |
| AATGTCTTGAGGCATAACCT+TGG | - | chr6_3:6230943-6230962 | None:intergenic | 40.0% | |
| ATGTCGTGGCAAGTTCAAAT+CGG | - | chr6_3:6231414-6231433 | None:intergenic | 40.0% | |
| TTTGAACTTGCCACGACATA+TGG | + | chr6_3:6231415-6231434 | Msa0935640:three_prime_UTR | 40.0% | |
| ! | TGGATGCCCAAAATTAGCTT+AGG | + | chr6_3:6231435-6231454 | Msa0935640:three_prime_UTR | 40.0% |
| ! | GGATGCCCAAAATTAGCTTA+GGG | + | chr6_3:6231436-6231455 | Msa0935640:three_prime_UTR | 40.0% |
| ! | GATGCCCAAAATTAGCTTAG+GGG | + | chr6_3:6231437-6231456 | Msa0935640:three_prime_UTR | 40.0% |
| CCAGTCATGATATAATGTGG+TGG | - | chr6_3:6231525-6231544 | None:intergenic | 40.0% | |
| CCACCACATTATATCATGAC+TGG | + | chr6_3:6231522-6231541 | Msa0935640:three_prime_UTR | 40.0% | |
| TCGCCAGTCATGATATAATG+TGG | - | chr6_3:6231528-6231547 | None:intergenic | 40.0% | |
| AGTTGCAAGGAAACACGGAA+CGG | + | chr6_3:6228093-6228112 | Msa0935640:CDS | 45.0% | |
| CCATTGCATCCGAATTCGAA+CGG | + | chr6_3:6228126-6228145 | Msa0935640:CDS | 45.0% | |
| GGCATTCATCCGTTCGAATT+CGG | - | chr6_3:6228138-6228157 | None:intergenic | 45.0% | |
| ! | CTGCGATTGAAGTGTCTTCA+AGG | - | chr6_3:6228183-6228202 | None:intergenic | 45.0% |
| CTTGAAGACACTTCAATCGC+AGG | + | chr6_3:6228181-6228200 | Msa0935640:CDS | 45.0% | |
| ACGAGTACATGGAACTAAGG+AGG | - | chr6_3:6228363-6228382 | None:intergenic | 45.0% | |
| ! | TTTGAAGCATGGTGCTAGTG+AGG | - | chr6_3:6228616-6228635 | None:intergenic | 45.0% |
| TTCGGCAAAGCGACTTTCTA+TGG | + | chr6_3:6228831-6228850 | Msa0935640:intron | 45.0% | |
| CCTGCAGAATGCAGAATCAT+TGG | - | chr6_3:6228885-6228904 | None:intergenic | 45.0% | |
| CCAATGATTCTGCATTCTGC+AGG | + | chr6_3:6228882-6228901 | Msa0935640:intron | 45.0% | |
| ATGATTCTGCATTCTGCAGG+TGG | + | chr6_3:6228885-6228904 | Msa0935640:intron | 45.0% | |
| ! | GCTTTACTGCTTGCTGATGA+TGG | + | chr6_3:6229493-6229512 | Msa0935640:CDS | 45.0% |
| CAGTACTATGGATTCTGGCA+AGG | + | chr6_3:6229606-6229625 | Msa0935640:intron | 45.0% | |
| TGGGCATCAAACAAAAGAGG+GGG | + | chr6_3:6229632-6229651 | Msa0935640:CDS | 45.0% | |
| ATGAGACAGGCGATCATGAA+AGG | + | chr6_3:6229681-6229700 | Msa0935640:CDS | 45.0% | |
| AGACCAACGACACACACTTA+AGG | + | chr6_3:6230084-6230103 | Msa0935640:CDS | 45.0% | |
| CTTAAGGAGCTTATGTCTGG+AGG | + | chr6_3:6230100-6230119 | Msa0935640:CDS | 45.0% | |
| CTCATCAAAGCAATTACCCG+AGG | - | chr6_3:6230173-6230192 | None:intergenic | 45.0% | |
| CAGCTCGTTATTATGCAAGC+CGG | + | chr6_3:6230906-6230925 | Msa0935640:intron | 45.0% | |
| AGCTCGTTATTATGCAAGCC+GGG | + | chr6_3:6230907-6230926 | Msa0935640:intron | 45.0% | |
| ! | TTTTGGGCATCCATATGTCG+TGG | - | chr6_3:6231428-6231447 | None:intergenic | 45.0% |
| AAACACGGAACGGTTGGAAG+TGG | + | chr6_3:6228103-6228122 | Msa0935640:CDS | 50.0% | |
| CCGTTCGAATTCGGATGCAA+TGG | - | chr6_3:6228129-6228148 | None:intergenic | 50.0% | |
| TCTAGCGCTCGTCTAAACTC+AGG | - | chr6_3:6228397-6228416 | None:intergenic | 50.0% | |
| ! | CGAGCGCTAGAGCTTGATTT+TGG | + | chr6_3:6228406-6228425 | Msa0935640:intron | 50.0% |
| !! | GTATTTGGTGCTGAACCAGC+TGG | + | chr6_3:6229463-6229482 | Msa0935640:CDS | 50.0% |
| GCTCCTTAAGTGTGTGTCGT+TGG | - | chr6_3:6230090-6230109 | None:intergenic | 50.0% | |
| GTCTGGAGGCTATGAAGTTG+AGG | + | chr6_3:6230114-6230133 | Msa0935640:CDS | 50.0% | |
| TCTCCATCCAGCACATTCCT+CGG | + | chr6_3:6230153-6230172 | Msa0935640:CDS | 50.0% | |
| CAATTACCCGAGGAATGTGC+TGG | - | chr6_3:6230163-6230182 | None:intergenic | 50.0% | |
| AGCCGGGCCTTAAATTTCCA+AGG | + | chr6_3:6230923-6230942 | Msa0935640:intron | 50.0% | |
| GCAAGGAAACACGGAACGGT+TGG | + | chr6_3:6228097-6228116 | Msa0935640:CDS | 55.0% | |
| TGAACCAGCTGCAAACCGAG+AGG | + | chr6_3:6228205-6228224 | Msa0935640:CDS | 55.0% | |
| AGTAAAGCTCCTGCACCAGC+TGG | - | chr6_3:6229481-6229500 | None:intergenic | 55.0% | |
| !! | GCTTGCTGATGATGGGAGTC+AGG | + | chr6_3:6229501-6229520 | Msa0935640:CDS | 55.0% |
| ! | CAAAAGAGGGGGCGCAGTAT+CGG | + | chr6_3:6229643-6229662 | Msa0935640:CDS | 55.0% |
| ! | AAAAGAGGGGGCGCAGTATC+GGG | + | chr6_3:6229644-6229663 | Msa0935640:CDS | 55.0% |
| TCCAACAGTTTGGGGAACCC+TGG | + | chr6_3:6230060-6230079 | Msa0935640:intron | 55.0% | |
| ! | TGTGTGTCGTTGGTCTGCCA+GGG | - | chr6_3:6230080-6230099 | None:intergenic | 55.0% |
| CTCCATCCAGCACATTCCTC+GGG | + | chr6_3:6230154-6230173 | Msa0935640:CDS | 55.0% | |
| TACCCGAGGAATGTGCTGGA+TGG | - | chr6_3:6230159-6230178 | None:intergenic | 55.0% | |
| ! | CTCACCTCTCGGTTTGCAGC+TGG | - | chr6_3:6228212-6228231 | None:intergenic | 60.0% |
| GCCAGGGTTCCCCAAACTGT+TGG | - | chr6_3:6230064-6230083 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCGTTGGTCTGCC+AGG | - | chr6_3:6230081-6230100 | None:intergenic | 60.0% |
| ! | GGTGCTGAACCAGCTGGTGC+AGG | + | chr6_3:6229469-6229488 | Msa0935640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6228026 | 6231560 | 6228026 | ID=Msa0935640;Name=Msa0935640 |
| chr6_3 | mRNA | 6228026 | 6231560 | 6228026 | ID=Msa0935640-mRNA-1;Parent=Msa0935640;Name=Msa0935640-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.6|0.8|1|1|5|254|192 |
| chr6_3 | exon | 6228026 | 6228226 | 6228026 | ID=Msa0935640-mRNA-1:exon:1946;Parent=Msa0935640-mRNA-1 |
| chr6_3 | exon | 6229448 | 6229522 | 6229448 | ID=Msa0935640-mRNA-1:exon:1947;Parent=Msa0935640-mRNA-1 |
| chr6_3 | exon | 6229609 | 6229752 | 6229609 | ID=Msa0935640-mRNA-1:exon:1948;Parent=Msa0935640-mRNA-1 |
| chr6_3 | exon | 6230068 | 6230175 | 6230068 | ID=Msa0935640-mRNA-1:exon:1949;Parent=Msa0935640-mRNA-1 |
| chr6_3 | exon | 6231256 | 6231560 | 6231256 | ID=Msa0935640-mRNA-1:exon:1950;Parent=Msa0935640-mRNA-1 |
| chr6_3 | CDS | 6228026 | 6228226 | 6228026 | ID=Msa0935640-mRNA-1:cds;Parent=Msa0935640-mRNA-1 |
| chr6_3 | CDS | 6229448 | 6229522 | 6229448 | ID=Msa0935640-mRNA-1:cds;Parent=Msa0935640-mRNA-1 |
| chr6_3 | CDS | 6229609 | 6229752 | 6229609 | ID=Msa0935640-mRNA-1:cds;Parent=Msa0935640-mRNA-1 |
| chr6_3 | CDS | 6230068 | 6230175 | 6230068 | ID=Msa0935640-mRNA-1:cds;Parent=Msa0935640-mRNA-1 |
| chr6_3 | CDS | 6231256 | 6231306 | 6231256 | ID=Msa0935640-mRNA-1:cds;Parent=Msa0935640-mRNA-1 |
| chr6_3 | three_prime_UTR | 6231307 | 6231560 | 6231307 | ID=Msa0935640-mRNA-1:three_prime_utr;Parent=Msa0935640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
